entity_token_1,entity_token_2,entity_token_a,entity_token_b,entity_doc,train_text,relation_text_1,relation_text_2
3,5,B-Application [SEP] 3DSim,B-AlternativeName [SEP] 3D Structural Implication of Mutations,0,"Here we present 3DSim ( 3D Structural Implication of Mutations ) , a database and web application facilitating the localization and visualization of single amino acid polymorphisms ( SAAPs ) mapped to protein structures even where the structure of the protein of interest is unknown .","Here we present 3DSim ( 3D Structural Implication of Mutations ) , a database and web application facilitating the localization and visualization of single amino acid polymorphisms ( SAAPs ) mapped to protein structures even where the structure of the protein of interest is unknown . [SEP] B-Application [SEP] 3DSim [SEP] B-AlternativeName [SEP] 3D Structural Implication of Mutations","Here we present 3DSim ( 3D Structural Implication of Mutations ) , a database and web application facilitating the localization and visualization of single amino acid polymorphisms ( SAAPs ) mapped to protein structures even where the structure of the protein of interest is unknown . [SEP] B-AlternativeName [SEP] 3D Structural Implication of Mutations [SEP] B-Application [SEP] 3DSim"
5,3,B-AlternativeName [SEP] 3D Structural Implication of Mutations,B-Application [SEP] 3DSim,0,"Here we present 3DSim ( 3D Structural Implication of Mutations ) , a database and web application facilitating the localization and visualization of single amino acid polymorphisms ( SAAPs ) mapped to protein structures even where the structure of the protein of interest is unknown .","Here we present 3DSim ( 3D Structural Implication of Mutations ) , a database and web application facilitating the localization and visualization of single amino acid polymorphisms ( SAAPs ) mapped to protein structures even where the structure of the protein of interest is unknown . [SEP] B-AlternativeName [SEP] 3D Structural Implication of Mutations [SEP] B-Application [SEP] 3DSim","Here we present 3DSim ( 3D Structural Implication of Mutations ) , a database and web application facilitating the localization and visualization of single amino acid polymorphisms ( SAAPs ) mapped to protein structures even where the structure of the protein of interest is unknown . [SEP] B-Application [SEP] 3DSim [SEP] B-AlternativeName [SEP] 3D Structural Implication of Mutations"
1,6,B-SoftwareCoreference [SEP] server,B-URL [SEP] http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf,1,The server is publicly available at http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf .,The server is publicly available at http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf . [SEP] B-SoftwareCoreference [SEP] server [SEP] B-URL [SEP] http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf,The server is publicly available at http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf . [SEP] B-URL [SEP] http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf [SEP] B-SoftwareCoreference [SEP] server
6,1,B-URL [SEP] http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf,B-SoftwareCoreference [SEP] server,1,The server is publicly available at http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf .,The server is publicly available at http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf . [SEP] B-URL [SEP] http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf [SEP] B-SoftwareCoreference [SEP] server,The server is publicly available at http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf . [SEP] B-SoftwareCoreference [SEP] server [SEP] B-URL [SEP] http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf
3,5,B-Application [SEP] 3DSim,B-AlternativeName [SEP] 3D Structural Implication of Mutations,2,"Here we present 3DSim ( 3D Structural Implication of Mutations ) , a system mapping single amino - acid polymorphisms onto structures of CATH domains .","Here we present 3DSim ( 3D Structural Implication of Mutations ) , a system mapping single amino - acid polymorphisms onto structures of CATH domains . [SEP] B-Application [SEP] 3DSim [SEP] B-AlternativeName [SEP] 3D Structural Implication of Mutations","Here we present 3DSim ( 3D Structural Implication of Mutations ) , a system mapping single amino - acid polymorphisms onto structures of CATH domains . [SEP] B-AlternativeName [SEP] 3D Structural Implication of Mutations [SEP] B-Application [SEP] 3DSim"
5,3,B-AlternativeName [SEP] 3D Structural Implication of Mutations,B-Application [SEP] 3DSim,2,"Here we present 3DSim ( 3D Structural Implication of Mutations ) , a system mapping single amino - acid polymorphisms onto structures of CATH domains .","Here we present 3DSim ( 3D Structural Implication of Mutations ) , a system mapping single amino - acid polymorphisms onto structures of CATH domains . [SEP] B-AlternativeName [SEP] 3D Structural Implication of Mutations [SEP] B-Application [SEP] 3DSim","Here we present 3DSim ( 3D Structural Implication of Mutations ) , a system mapping single amino - acid polymorphisms onto structures of CATH domains . [SEP] B-Application [SEP] 3DSim [SEP] B-AlternativeName [SEP] 3D Structural Implication of Mutations"
29,30,B-Application [SEP] rendered,B-URL [SEP] in,3,"This provides a comprehensive overview of the distribution of mutations in structural space , as well as a visualization tool for pinpointing the locations of mutations on individual structures rendered in Jmol http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf , as well as links to detailed information on each sequence , structure and mutation .","This provides a comprehensive overview of the distribution of mutations in structural space , as well as a visualization tool for pinpointing the locations of mutations on individual structures rendered in Jmol http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf , as well as links to detailed information on each sequence , structure and mutation . [SEP] B-Application [SEP] rendered [SEP] B-URL [SEP] in","This provides a comprehensive overview of the distribution of mutations in structural space , as well as a visualization tool for pinpointing the locations of mutations on individual structures rendered in Jmol http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf , as well as links to detailed information on each sequence , structure and mutation . [SEP] B-URL [SEP] in [SEP] B-Application [SEP] rendered"
30,29,B-URL [SEP] in,B-Application [SEP] rendered,3,"This provides a comprehensive overview of the distribution of mutations in structural space , as well as a visualization tool for pinpointing the locations of mutations on individual structures rendered in Jmol http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf , as well as links to detailed information on each sequence , structure and mutation .","This provides a comprehensive overview of the distribution of mutations in structural space , as well as a visualization tool for pinpointing the locations of mutations on individual structures rendered in Jmol http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf , as well as links to detailed information on each sequence , structure and mutation . [SEP] B-URL [SEP] in [SEP] B-Application [SEP] rendered","This provides a comprehensive overview of the distribution of mutations in structural space , as well as a visualization tool for pinpointing the locations of mutations on individual structures rendered in Jmol http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf , as well as links to detailed information on each sequence , structure and mutation . [SEP] B-Application [SEP] rendered [SEP] B-URL [SEP] in"
1,27,B-PlugIn [SEP] 3DSim,B-URL [SEP] http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf,4,"The 3DSim application , which was designed with the aim of being very intuitive , easy to use and user - friendly , is publicly available at http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf .","The 3DSim application , which was designed with the aim of being very intuitive , easy to use and user - friendly , is publicly available at http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf . [SEP] B-PlugIn [SEP] 3DSim [SEP] B-URL [SEP] http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf","The 3DSim application , which was designed with the aim of being very intuitive , easy to use and user - friendly , is publicly available at http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf . [SEP] B-URL [SEP] http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf [SEP] B-PlugIn [SEP] 3DSim"
27,1,B-URL [SEP] http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf,B-PlugIn [SEP] 3DSim,4,"The 3DSim application , which was designed with the aim of being very intuitive , easy to use and user - friendly , is publicly available at http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf .","The 3DSim application , which was designed with the aim of being very intuitive , easy to use and user - friendly , is publicly available at http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf . [SEP] B-URL [SEP] http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf [SEP] B-PlugIn [SEP] 3DSim","The 3DSim application , which was designed with the aim of being very intuitive , easy to use and user - friendly , is publicly available at http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf . [SEP] B-PlugIn [SEP] 3DSim [SEP] B-URL [SEP] http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf"
29,30,B-Application [SEP] BLAST,B-Citation [SEP] [ 26 ],5,"For each of the 11904 Gene3D domain sequences mapped to CATH structural superfamilies for which there is information about mutations in SAAPdb ( see previous section ) , a BLAST [ 26 ] search was run against the corresponding superfamily database .","For each of the 11904 Gene3D domain sequences mapped to CATH structural superfamilies for which there is information about mutations in SAAPdb ( see previous section ) , a BLAST [ 26 ] search was run against the corresponding superfamily database . [SEP] B-Application [SEP] BLAST [SEP] B-Citation [SEP] [ 26 ]","For each of the 11904 Gene3D domain sequences mapped to CATH structural superfamilies for which there is information about mutations in SAAPdb ( see previous section ) , a BLAST [ 26 ] search was run against the corresponding superfamily database . [SEP] B-Citation [SEP] [ 26 ] [SEP] B-Application [SEP] BLAST"
29,21,B-Application [SEP] BLAST,B-Application [SEP] SAAPdb,5,"For each of the 11904 Gene3D domain sequences mapped to CATH structural superfamilies for which there is information about mutations in SAAPdb ( see previous section ) , a BLAST [ 26 ] search was run against the corresponding superfamily database .","For each of the 11904 Gene3D domain sequences mapped to CATH structural superfamilies for which there is information about mutations in SAAPdb ( see previous section ) , a BLAST [ 26 ] search was run against the corresponding superfamily database . [SEP] B-Application [SEP] BLAST [SEP] B-Application [SEP] SAAPdb","For each of the 11904 Gene3D domain sequences mapped to CATH structural superfamilies for which there is information about mutations in SAAPdb ( see previous section ) , a BLAST [ 26 ] search was run against the corresponding superfamily database . [SEP] B-Application [SEP] SAAPdb [SEP] B-Application [SEP] BLAST"
30,29,B-Citation [SEP] [ 26 ],B-Application [SEP] BLAST,5,"For each of the 11904 Gene3D domain sequences mapped to CATH structural superfamilies for which there is information about mutations in SAAPdb ( see previous section ) , a BLAST [ 26 ] search was run against the corresponding superfamily database .","For each of the 11904 Gene3D domain sequences mapped to CATH structural superfamilies for which there is information about mutations in SAAPdb ( see previous section ) , a BLAST [ 26 ] search was run against the corresponding superfamily database . [SEP] B-Citation [SEP] [ 26 ] [SEP] B-Application [SEP] BLAST","For each of the 11904 Gene3D domain sequences mapped to CATH structural superfamilies for which there is information about mutations in SAAPdb ( see previous section ) , a BLAST [ 26 ] search was run against the corresponding superfamily database . [SEP] B-Application [SEP] BLAST [SEP] B-Citation [SEP] [ 26 ]"
30,21,B-Citation [SEP] [ 26 ],B-Application [SEP] SAAPdb,5,"For each of the 11904 Gene3D domain sequences mapped to CATH structural superfamilies for which there is information about mutations in SAAPdb ( see previous section ) , a BLAST [ 26 ] search was run against the corresponding superfamily database .","For each of the 11904 Gene3D domain sequences mapped to CATH structural superfamilies for which there is information about mutations in SAAPdb ( see previous section ) , a BLAST [ 26 ] search was run against the corresponding superfamily database . [SEP] B-Citation [SEP] [ 26 ] [SEP] B-Application [SEP] SAAPdb","For each of the 11904 Gene3D domain sequences mapped to CATH structural superfamilies for which there is information about mutations in SAAPdb ( see previous section ) , a BLAST [ 26 ] search was run against the corresponding superfamily database . [SEP] B-Application [SEP] SAAPdb [SEP] B-Citation [SEP] [ 26 ]"
21,29,B-Application [SEP] SAAPdb,B-Application [SEP] BLAST,5,"For each of the 11904 Gene3D domain sequences mapped to CATH structural superfamilies for which there is information about mutations in SAAPdb ( see previous section ) , a BLAST [ 26 ] search was run against the corresponding superfamily database .","For each of the 11904 Gene3D domain sequences mapped to CATH structural superfamilies for which there is information about mutations in SAAPdb ( see previous section ) , a BLAST [ 26 ] search was run against the corresponding superfamily database . [SEP] B-Application [SEP] SAAPdb [SEP] B-Application [SEP] BLAST","For each of the 11904 Gene3D domain sequences mapped to CATH structural superfamilies for which there is information about mutations in SAAPdb ( see previous section ) , a BLAST [ 26 ] search was run against the corresponding superfamily database . [SEP] B-Application [SEP] BLAST [SEP] B-Application [SEP] SAAPdb"
21,30,B-Application [SEP] SAAPdb,B-Citation [SEP] [ 26 ],5,"For each of the 11904 Gene3D domain sequences mapped to CATH structural superfamilies for which there is information about mutations in SAAPdb ( see previous section ) , a BLAST [ 26 ] search was run against the corresponding superfamily database .","For each of the 11904 Gene3D domain sequences mapped to CATH structural superfamilies for which there is information about mutations in SAAPdb ( see previous section ) , a BLAST [ 26 ] search was run against the corresponding superfamily database . [SEP] B-Application [SEP] SAAPdb [SEP] B-Citation [SEP] [ 26 ]","For each of the 11904 Gene3D domain sequences mapped to CATH structural superfamilies for which there is information about mutations in SAAPdb ( see previous section ) , a BLAST [ 26 ] search was run against the corresponding superfamily database . [SEP] B-Citation [SEP] [ 26 ] [SEP] B-Application [SEP] SAAPdb"
15,16,B-Application [SEP] MUSCLE,B-Citation [SEP] [ 27 ],6,The groups ( including the sequence of the representative structure ) were then aligned using MUSCLE [ 27 ] and the resulting alignments used to transfer the mutations from Gene3D sequences to CATH domain representative structures .,The groups ( including the sequence of the representative structure ) were then aligned using MUSCLE [ 27 ] and the resulting alignments used to transfer the mutations from Gene3D sequences to CATH domain representative structures . [SEP] B-Application [SEP] MUSCLE [SEP] B-Citation [SEP] [ 27 ],The groups ( including the sequence of the representative structure ) were then aligned using MUSCLE [ 27 ] and the resulting alignments used to transfer the mutations from Gene3D sequences to CATH domain representative structures . [SEP] B-Citation [SEP] [ 27 ] [SEP] B-Application [SEP] MUSCLE
16,15,B-Citation [SEP] [ 27 ],B-Application [SEP] MUSCLE,6,The groups ( including the sequence of the representative structure ) were then aligned using MUSCLE [ 27 ] and the resulting alignments used to transfer the mutations from Gene3D sequences to CATH domain representative structures .,The groups ( including the sequence of the representative structure ) were then aligned using MUSCLE [ 27 ] and the resulting alignments used to transfer the mutations from Gene3D sequences to CATH domain representative structures . [SEP] B-Citation [SEP] [ 27 ] [SEP] B-Application [SEP] MUSCLE,The groups ( including the sequence of the representative structure ) were then aligned using MUSCLE [ 27 ] and the resulting alignments used to transfer the mutations from Gene3D sequences to CATH domain representative structures . [SEP] B-Application [SEP] MUSCLE [SEP] B-Citation [SEP] [ 27 ]
9,14,B-Application [SEP] 3DSim,B-PlugIn [SEP] Jmol,7,"Once the user has selected a CATH domain , 3DSim displays both an interactive Jmol plug - in that allows the visualization of the mutations projected onto the three - dimensional structure of the representative CATH domain and a table displaying all the information available for that given domain in terms of available mutations , sequence and structure positions of the mutations , pathogenicity information , and similarity ( BLAST sequence identity ) between the sequences in Gene3D and the representative CATH domain sequence .","Once the user has selected a CATH domain , 3DSim displays both an interactive Jmol plug - in that allows the visualization of the mutations projected onto the three - dimensional structure of the representative CATH domain and a table displaying all the information available for that given domain in terms of available mutations , sequence and structure positions of the mutations , pathogenicity information , and similarity ( BLAST sequence identity ) between the sequences in Gene3D and the representative CATH domain sequence . [SEP] B-Application [SEP] 3DSim [SEP] B-PlugIn [SEP] Jmol","Once the user has selected a CATH domain , 3DSim displays both an interactive Jmol plug - in that allows the visualization of the mutations projected onto the three - dimensional structure of the representative CATH domain and a table displaying all the information available for that given domain in terms of available mutations , sequence and structure positions of the mutations , pathogenicity information , and similarity ( BLAST sequence identity ) between the sequences in Gene3D and the representative CATH domain sequence . [SEP] B-PlugIn [SEP] Jmol [SEP] B-Application [SEP] 3DSim"
9,75,B-Application [SEP] 3DSim,B-Application [SEP] sequences,7,"Once the user has selected a CATH domain , 3DSim displays both an interactive Jmol plug - in that allows the visualization of the mutations projected onto the three - dimensional structure of the representative CATH domain and a table displaying all the information available for that given domain in terms of available mutations , sequence and structure positions of the mutations , pathogenicity information , and similarity ( BLAST sequence identity ) between the sequences in Gene3D and the representative CATH domain sequence .","Once the user has selected a CATH domain , 3DSim displays both an interactive Jmol plug - in that allows the visualization of the mutations projected onto the three - dimensional structure of the representative CATH domain and a table displaying all the information available for that given domain in terms of available mutations , sequence and structure positions of the mutations , pathogenicity information , and similarity ( BLAST sequence identity ) between the sequences in Gene3D and the representative CATH domain sequence . [SEP] B-Application [SEP] 3DSim [SEP] B-Application [SEP] sequences","Once the user has selected a CATH domain , 3DSim displays both an interactive Jmol plug - in that allows the visualization of the mutations projected onto the three - dimensional structure of the representative CATH domain and a table displaying all the information available for that given domain in terms of available mutations , sequence and structure positions of the mutations , pathogenicity information , and similarity ( BLAST sequence identity ) between the sequences in Gene3D and the representative CATH domain sequence . [SEP] B-Application [SEP] sequences [SEP] B-Application [SEP] 3DSim"
14,9,B-PlugIn [SEP] Jmol,B-Application [SEP] 3DSim,7,"Once the user has selected a CATH domain , 3DSim displays both an interactive Jmol plug - in that allows the visualization of the mutations projected onto the three - dimensional structure of the representative CATH domain and a table displaying all the information available for that given domain in terms of available mutations , sequence and structure positions of the mutations , pathogenicity information , and similarity ( BLAST sequence identity ) between the sequences in Gene3D and the representative CATH domain sequence .","Once the user has selected a CATH domain , 3DSim displays both an interactive Jmol plug - in that allows the visualization of the mutations projected onto the three - dimensional structure of the representative CATH domain and a table displaying all the information available for that given domain in terms of available mutations , sequence and structure positions of the mutations , pathogenicity information , and similarity ( BLAST sequence identity ) between the sequences in Gene3D and the representative CATH domain sequence . [SEP] B-PlugIn [SEP] Jmol [SEP] B-Application [SEP] 3DSim","Once the user has selected a CATH domain , 3DSim displays both an interactive Jmol plug - in that allows the visualization of the mutations projected onto the three - dimensional structure of the representative CATH domain and a table displaying all the information available for that given domain in terms of available mutations , sequence and structure positions of the mutations , pathogenicity information , and similarity ( BLAST sequence identity ) between the sequences in Gene3D and the representative CATH domain sequence . [SEP] B-Application [SEP] 3DSim [SEP] B-PlugIn [SEP] Jmol"
14,75,B-PlugIn [SEP] Jmol,B-Application [SEP] sequences,7,"Once the user has selected a CATH domain , 3DSim displays both an interactive Jmol plug - in that allows the visualization of the mutations projected onto the three - dimensional structure of the representative CATH domain and a table displaying all the information available for that given domain in terms of available mutations , sequence and structure positions of the mutations , pathogenicity information , and similarity ( BLAST sequence identity ) between the sequences in Gene3D and the representative CATH domain sequence .","Once the user has selected a CATH domain , 3DSim displays both an interactive Jmol plug - in that allows the visualization of the mutations projected onto the three - dimensional structure of the representative CATH domain and a table displaying all the information available for that given domain in terms of available mutations , sequence and structure positions of the mutations , pathogenicity information , and similarity ( BLAST sequence identity ) between the sequences in Gene3D and the representative CATH domain sequence . [SEP] B-PlugIn [SEP] Jmol [SEP] B-Application [SEP] sequences","Once the user has selected a CATH domain , 3DSim displays both an interactive Jmol plug - in that allows the visualization of the mutations projected onto the three - dimensional structure of the representative CATH domain and a table displaying all the information available for that given domain in terms of available mutations , sequence and structure positions of the mutations , pathogenicity information , and similarity ( BLAST sequence identity ) between the sequences in Gene3D and the representative CATH domain sequence . [SEP] B-Application [SEP] sequences [SEP] B-PlugIn [SEP] Jmol"
75,9,B-Application [SEP] sequences,B-Application [SEP] 3DSim,7,"Once the user has selected a CATH domain , 3DSim displays both an interactive Jmol plug - in that allows the visualization of the mutations projected onto the three - dimensional structure of the representative CATH domain and a table displaying all the information available for that given domain in terms of available mutations , sequence and structure positions of the mutations , pathogenicity information , and similarity ( BLAST sequence identity ) between the sequences in Gene3D and the representative CATH domain sequence .","Once the user has selected a CATH domain , 3DSim displays both an interactive Jmol plug - in that allows the visualization of the mutations projected onto the three - dimensional structure of the representative CATH domain and a table displaying all the information available for that given domain in terms of available mutations , sequence and structure positions of the mutations , pathogenicity information , and similarity ( BLAST sequence identity ) between the sequences in Gene3D and the representative CATH domain sequence . [SEP] B-Application [SEP] sequences [SEP] B-Application [SEP] 3DSim","Once the user has selected a CATH domain , 3DSim displays both an interactive Jmol plug - in that allows the visualization of the mutations projected onto the three - dimensional structure of the representative CATH domain and a table displaying all the information available for that given domain in terms of available mutations , sequence and structure positions of the mutations , pathogenicity information , and similarity ( BLAST sequence identity ) between the sequences in Gene3D and the representative CATH domain sequence . [SEP] B-Application [SEP] 3DSim [SEP] B-Application [SEP] sequences"
75,14,B-Application [SEP] sequences,B-PlugIn [SEP] Jmol,7,"Once the user has selected a CATH domain , 3DSim displays both an interactive Jmol plug - in that allows the visualization of the mutations projected onto the three - dimensional structure of the representative CATH domain and a table displaying all the information available for that given domain in terms of available mutations , sequence and structure positions of the mutations , pathogenicity information , and similarity ( BLAST sequence identity ) between the sequences in Gene3D and the representative CATH domain sequence .","Once the user has selected a CATH domain , 3DSim displays both an interactive Jmol plug - in that allows the visualization of the mutations projected onto the three - dimensional structure of the representative CATH domain and a table displaying all the information available for that given domain in terms of available mutations , sequence and structure positions of the mutations , pathogenicity information , and similarity ( BLAST sequence identity ) between the sequences in Gene3D and the representative CATH domain sequence . [SEP] B-Application [SEP] sequences [SEP] B-PlugIn [SEP] Jmol","Once the user has selected a CATH domain , 3DSim displays both an interactive Jmol plug - in that allows the visualization of the mutations projected onto the three - dimensional structure of the representative CATH domain and a table displaying all the information available for that given domain in terms of available mutations , sequence and structure positions of the mutations , pathogenicity information , and similarity ( BLAST sequence identity ) between the sequences in Gene3D and the representative CATH domain sequence . [SEP] B-PlugIn [SEP] Jmol [SEP] B-Application [SEP] sequences"
22,29,B-Application [SEP] SOAP,B-ProgrammingEnvironment [SEP] Perl,8,"In order to allow remote programmatic access to the information contained in the database , we have developed a total of nine SOAP web services , powered by the Perl SOAP :: Lite toolkit http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf .","In order to allow remote programmatic access to the information contained in the database , we have developed a total of nine SOAP web services , powered by the Perl SOAP :: Lite toolkit http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf . [SEP] B-Application [SEP] SOAP [SEP] B-ProgrammingEnvironment [SEP] Perl","In order to allow remote programmatic access to the information contained in the database , we have developed a total of nine SOAP web services , powered by the Perl SOAP :: Lite toolkit http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf . [SEP] B-ProgrammingEnvironment [SEP] Perl [SEP] B-Application [SEP] SOAP"
22,30,B-Application [SEP] SOAP,B-PlugIn [SEP] SOAP :: Lite,8,"In order to allow remote programmatic access to the information contained in the database , we have developed a total of nine SOAP web services , powered by the Perl SOAP :: Lite toolkit http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf .","In order to allow remote programmatic access to the information contained in the database , we have developed a total of nine SOAP web services , powered by the Perl SOAP :: Lite toolkit http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf . [SEP] B-Application [SEP] SOAP [SEP] B-PlugIn [SEP] SOAP :: Lite","In order to allow remote programmatic access to the information contained in the database , we have developed a total of nine SOAP web services , powered by the Perl SOAP :: Lite toolkit http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf . [SEP] B-PlugIn [SEP] SOAP :: Lite [SEP] B-Application [SEP] SOAP"
22,34,B-Application [SEP] SOAP,B-URL [SEP] http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf,8,"In order to allow remote programmatic access to the information contained in the database , we have developed a total of nine SOAP web services , powered by the Perl SOAP :: Lite toolkit http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf .","In order to allow remote programmatic access to the information contained in the database , we have developed a total of nine SOAP web services , powered by the Perl SOAP :: Lite toolkit http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf . [SEP] B-Application [SEP] SOAP [SEP] B-URL [SEP] http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf","In order to allow remote programmatic access to the information contained in the database , we have developed a total of nine SOAP web services , powered by the Perl SOAP :: Lite toolkit http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf . [SEP] B-URL [SEP] http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf [SEP] B-Application [SEP] SOAP"
29,22,B-ProgrammingEnvironment [SEP] Perl,B-Application [SEP] SOAP,8,"In order to allow remote programmatic access to the information contained in the database , we have developed a total of nine SOAP web services , powered by the Perl SOAP :: Lite toolkit http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf .","In order to allow remote programmatic access to the information contained in the database , we have developed a total of nine SOAP web services , powered by the Perl SOAP :: Lite toolkit http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf . [SEP] B-ProgrammingEnvironment [SEP] Perl [SEP] B-Application [SEP] SOAP","In order to allow remote programmatic access to the information contained in the database , we have developed a total of nine SOAP web services , powered by the Perl SOAP :: Lite toolkit http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf . [SEP] B-Application [SEP] SOAP [SEP] B-ProgrammingEnvironment [SEP] Perl"
29,30,B-ProgrammingEnvironment [SEP] Perl,B-PlugIn [SEP] SOAP :: Lite,8,"In order to allow remote programmatic access to the information contained in the database , we have developed a total of nine SOAP web services , powered by the Perl SOAP :: Lite toolkit http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf .","In order to allow remote programmatic access to the information contained in the database , we have developed a total of nine SOAP web services , powered by the Perl SOAP :: Lite toolkit http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf . [SEP] B-ProgrammingEnvironment [SEP] Perl [SEP] B-PlugIn [SEP] SOAP :: Lite","In order to allow remote programmatic access to the information contained in the database , we have developed a total of nine SOAP web services , powered by the Perl SOAP :: Lite toolkit http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf . [SEP] B-PlugIn [SEP] SOAP :: Lite [SEP] B-ProgrammingEnvironment [SEP] Perl"
29,34,B-ProgrammingEnvironment [SEP] Perl,B-URL [SEP] http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf,8,"In order to allow remote programmatic access to the information contained in the database , we have developed a total of nine SOAP web services , powered by the Perl SOAP :: Lite toolkit http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf .","In order to allow remote programmatic access to the information contained in the database , we have developed a total of nine SOAP web services , powered by the Perl SOAP :: Lite toolkit http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf . [SEP] B-ProgrammingEnvironment [SEP] Perl [SEP] B-URL [SEP] http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf","In order to allow remote programmatic access to the information contained in the database , we have developed a total of nine SOAP web services , powered by the Perl SOAP :: Lite toolkit http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf . [SEP] B-URL [SEP] http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf [SEP] B-ProgrammingEnvironment [SEP] Perl"
30,22,B-PlugIn [SEP] SOAP :: Lite,B-Application [SEP] SOAP,8,"In order to allow remote programmatic access to the information contained in the database , we have developed a total of nine SOAP web services , powered by the Perl SOAP :: Lite toolkit http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf .","In order to allow remote programmatic access to the information contained in the database , we have developed a total of nine SOAP web services , powered by the Perl SOAP :: Lite toolkit http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf . [SEP] B-PlugIn [SEP] SOAP :: Lite [SEP] B-Application [SEP] SOAP","In order to allow remote programmatic access to the information contained in the database , we have developed a total of nine SOAP web services , powered by the Perl SOAP :: Lite toolkit http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf . [SEP] B-Application [SEP] SOAP [SEP] B-PlugIn [SEP] SOAP :: Lite"
30,29,B-PlugIn [SEP] SOAP :: Lite,B-ProgrammingEnvironment [SEP] Perl,8,"In order to allow remote programmatic access to the information contained in the database , we have developed a total of nine SOAP web services , powered by the Perl SOAP :: Lite toolkit http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf .","In order to allow remote programmatic access to the information contained in the database , we have developed a total of nine SOAP web services , powered by the Perl SOAP :: Lite toolkit http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf . [SEP] B-PlugIn [SEP] SOAP :: Lite [SEP] B-ProgrammingEnvironment [SEP] Perl","In order to allow remote programmatic access to the information contained in the database , we have developed a total of nine SOAP web services , powered by the Perl SOAP :: Lite toolkit http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf . [SEP] B-ProgrammingEnvironment [SEP] Perl [SEP] B-PlugIn [SEP] SOAP :: Lite"
30,34,B-PlugIn [SEP] SOAP :: Lite,B-URL [SEP] http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf,8,"In order to allow remote programmatic access to the information contained in the database , we have developed a total of nine SOAP web services , powered by the Perl SOAP :: Lite toolkit http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf .","In order to allow remote programmatic access to the information contained in the database , we have developed a total of nine SOAP web services , powered by the Perl SOAP :: Lite toolkit http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf . [SEP] B-PlugIn [SEP] SOAP :: Lite [SEP] B-URL [SEP] http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf","In order to allow remote programmatic access to the information contained in the database , we have developed a total of nine SOAP web services , powered by the Perl SOAP :: Lite toolkit http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf . [SEP] B-URL [SEP] http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf [SEP] B-PlugIn [SEP] SOAP :: Lite"
34,22,B-URL [SEP] http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf,B-Application [SEP] SOAP,8,"In order to allow remote programmatic access to the information contained in the database , we have developed a total of nine SOAP web services , powered by the Perl SOAP :: Lite toolkit http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf .","In order to allow remote programmatic access to the information contained in the database , we have developed a total of nine SOAP web services , powered by the Perl SOAP :: Lite toolkit http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf . [SEP] B-URL [SEP] http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf [SEP] B-Application [SEP] SOAP","In order to allow remote programmatic access to the information contained in the database , we have developed a total of nine SOAP web services , powered by the Perl SOAP :: Lite toolkit http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf . [SEP] B-Application [SEP] SOAP [SEP] B-URL [SEP] http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf"
34,29,B-URL [SEP] http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf,B-ProgrammingEnvironment [SEP] Perl,8,"In order to allow remote programmatic access to the information contained in the database , we have developed a total of nine SOAP web services , powered by the Perl SOAP :: Lite toolkit http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf .","In order to allow remote programmatic access to the information contained in the database , we have developed a total of nine SOAP web services , powered by the Perl SOAP :: Lite toolkit http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf . [SEP] B-URL [SEP] http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf [SEP] B-ProgrammingEnvironment [SEP] Perl","In order to allow remote programmatic access to the information contained in the database , we have developed a total of nine SOAP web services , powered by the Perl SOAP :: Lite toolkit http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf . [SEP] B-ProgrammingEnvironment [SEP] Perl [SEP] B-URL [SEP] http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf"
34,30,B-URL [SEP] http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf,B-PlugIn [SEP] SOAP :: Lite,8,"In order to allow remote programmatic access to the information contained in the database , we have developed a total of nine SOAP web services , powered by the Perl SOAP :: Lite toolkit http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf .","In order to allow remote programmatic access to the information contained in the database , we have developed a total of nine SOAP web services , powered by the Perl SOAP :: Lite toolkit http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf . [SEP] B-URL [SEP] http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf [SEP] B-PlugIn [SEP] SOAP :: Lite","In order to allow remote programmatic access to the information contained in the database , we have developed a total of nine SOAP web services , powered by the Perl SOAP :: Lite toolkit http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf . [SEP] B-PlugIn [SEP] SOAP :: Lite [SEP] B-URL [SEP] http://www.biomedcentral.com/content/pdf/1471-2105-10-S8-info.pdf"
5,3,B-AlternativeName [SEP] 3D Structural Implication of Mutations,B-Application [SEP] 3DSim,9,"We have presented 3DSim ( 3D Structural Implication of Mutations ) , a system that enables the localization and visualization of single amino acid polymorphisms projected onto protein structures based on homologous relationships captured in the CATH and Gene3D databases .","We have presented 3DSim ( 3D Structural Implication of Mutations ) , a system that enables the localization and visualization of single amino acid polymorphisms projected onto protein structures based on homologous relationships captured in the CATH and Gene3D databases . [SEP] B-AlternativeName [SEP] 3D Structural Implication of Mutations [SEP] B-Application [SEP] 3DSim","We have presented 3DSim ( 3D Structural Implication of Mutations ) , a system that enables the localization and visualization of single amino acid polymorphisms projected onto protein structures based on homologous relationships captured in the CATH and Gene3D databases . [SEP] B-Application [SEP] 3DSim [SEP] B-AlternativeName [SEP] 3D Structural Implication of Mutations"
5,36,B-AlternativeName [SEP] 3D Structural Implication of Mutations,B-Application [SEP] CATH,9,"We have presented 3DSim ( 3D Structural Implication of Mutations ) , a system that enables the localization and visualization of single amino acid polymorphisms projected onto protein structures based on homologous relationships captured in the CATH and Gene3D databases .","We have presented 3DSim ( 3D Structural Implication of Mutations ) , a system that enables the localization and visualization of single amino acid polymorphisms projected onto protein structures based on homologous relationships captured in the CATH and Gene3D databases . [SEP] B-AlternativeName [SEP] 3D Structural Implication of Mutations [SEP] B-Application [SEP] CATH","We have presented 3DSim ( 3D Structural Implication of Mutations ) , a system that enables the localization and visualization of single amino acid polymorphisms projected onto protein structures based on homologous relationships captured in the CATH and Gene3D databases . [SEP] B-Application [SEP] CATH [SEP] B-AlternativeName [SEP] 3D Structural Implication of Mutations"
3,5,B-Application [SEP] 3DSim,B-AlternativeName [SEP] 3D Structural Implication of Mutations,9,"We have presented 3DSim ( 3D Structural Implication of Mutations ) , a system that enables the localization and visualization of single amino acid polymorphisms projected onto protein structures based on homologous relationships captured in the CATH and Gene3D databases .","We have presented 3DSim ( 3D Structural Implication of Mutations ) , a system that enables the localization and visualization of single amino acid polymorphisms projected onto protein structures based on homologous relationships captured in the CATH and Gene3D databases . [SEP] B-Application [SEP] 3DSim [SEP] B-AlternativeName [SEP] 3D Structural Implication of Mutations","We have presented 3DSim ( 3D Structural Implication of Mutations ) , a system that enables the localization and visualization of single amino acid polymorphisms projected onto protein structures based on homologous relationships captured in the CATH and Gene3D databases . [SEP] B-AlternativeName [SEP] 3D Structural Implication of Mutations [SEP] B-Application [SEP] 3DSim"
3,36,B-Application [SEP] 3DSim,B-Application [SEP] CATH,9,"We have presented 3DSim ( 3D Structural Implication of Mutations ) , a system that enables the localization and visualization of single amino acid polymorphisms projected onto protein structures based on homologous relationships captured in the CATH and Gene3D databases .","We have presented 3DSim ( 3D Structural Implication of Mutations ) , a system that enables the localization and visualization of single amino acid polymorphisms projected onto protein structures based on homologous relationships captured in the CATH and Gene3D databases . [SEP] B-Application [SEP] 3DSim [SEP] B-Application [SEP] CATH","We have presented 3DSim ( 3D Structural Implication of Mutations ) , a system that enables the localization and visualization of single amino acid polymorphisms projected onto protein structures based on homologous relationships captured in the CATH and Gene3D databases . [SEP] B-Application [SEP] CATH [SEP] B-Application [SEP] 3DSim"
36,5,B-Application [SEP] CATH,B-AlternativeName [SEP] 3D Structural Implication of Mutations,9,"We have presented 3DSim ( 3D Structural Implication of Mutations ) , a system that enables the localization and visualization of single amino acid polymorphisms projected onto protein structures based on homologous relationships captured in the CATH and Gene3D databases .","We have presented 3DSim ( 3D Structural Implication of Mutations ) , a system that enables the localization and visualization of single amino acid polymorphisms projected onto protein structures based on homologous relationships captured in the CATH and Gene3D databases . [SEP] B-Application [SEP] CATH [SEP] B-AlternativeName [SEP] 3D Structural Implication of Mutations","We have presented 3DSim ( 3D Structural Implication of Mutations ) , a system that enables the localization and visualization of single amino acid polymorphisms projected onto protein structures based on homologous relationships captured in the CATH and Gene3D databases . [SEP] B-AlternativeName [SEP] 3D Structural Implication of Mutations [SEP] B-Application [SEP] CATH"
36,3,B-Application [SEP] CATH,B-Application [SEP] 3DSim,9,"We have presented 3DSim ( 3D Structural Implication of Mutations ) , a system that enables the localization and visualization of single amino acid polymorphisms projected onto protein structures based on homologous relationships captured in the CATH and Gene3D databases .","We have presented 3DSim ( 3D Structural Implication of Mutations ) , a system that enables the localization and visualization of single amino acid polymorphisms projected onto protein structures based on homologous relationships captured in the CATH and Gene3D databases . [SEP] B-Application [SEP] CATH [SEP] B-Application [SEP] 3DSim","We have presented 3DSim ( 3D Structural Implication of Mutations ) , a system that enables the localization and visualization of single amino acid polymorphisms projected onto protein structures based on homologous relationships captured in the CATH and Gene3D databases . [SEP] B-Application [SEP] 3DSim [SEP] B-Application [SEP] CATH"
28,1,B-URL [SEP] http://3DSim.bioinfo.cnio.es/,B-SoftwareCoreference [SEP] server,10,"The server has been running internally since we started working on the analysis of point mutations in protein families [ 31 , 32 ] and is accessible at http://3DSim.bioinfo.cnio.es/ .","The server has been running internally since we started working on the analysis of point mutations in protein families [ 31 , 32 ] and is accessible at http://3DSim.bioinfo.cnio.es/ . [SEP] B-URL [SEP] http://3DSim.bioinfo.cnio.es/ [SEP] B-SoftwareCoreference [SEP] server","The server has been running internally since we started working on the analysis of point mutations in protein families [ 31 , 32 ] and is accessible at http://3DSim.bioinfo.cnio.es/ . [SEP] B-SoftwareCoreference [SEP] server [SEP] B-URL [SEP] http://3DSim.bioinfo.cnio.es/"
1,28,B-SoftwareCoreference [SEP] server,B-URL [SEP] http://3DSim.bioinfo.cnio.es/,10,"The server has been running internally since we started working on the analysis of point mutations in protein families [ 31 , 32 ] and is accessible at http://3DSim.bioinfo.cnio.es/ .","The server has been running internally since we started working on the analysis of point mutations in protein families [ 31 , 32 ] and is accessible at http://3DSim.bioinfo.cnio.es/ . [SEP] B-SoftwareCoreference [SEP] server [SEP] B-URL [SEP] http://3DSim.bioinfo.cnio.es/","The server has been running internally since we started working on the analysis of point mutations in protein families [ 31 , 32 ] and is accessible at http://3DSim.bioinfo.cnio.es/ . [SEP] B-URL [SEP] http://3DSim.bioinfo.cnio.es/ [SEP] B-SoftwareCoreference [SEP] server"
7,8,B-Application [SEP] HSSP,B-Citation [SEP] [ 33 ],11,Some proteins that are not available in HSSP [ 33 ] and DSSP [ 34 ] programs are also omitted .,Some proteins that are not available in HSSP [ 33 ] and DSSP [ 34 ] programs are also omitted . [SEP] B-Application [SEP] HSSP [SEP] B-Citation [SEP] [ 33 ],Some proteins that are not available in HSSP [ 33 ] and DSSP [ 34 ] programs are also omitted . [SEP] B-Citation [SEP] [ 33 ] [SEP] B-Application [SEP] HSSP
7,12,B-Application [SEP] HSSP,B-Application [SEP] DSSP,11,Some proteins that are not available in HSSP [ 33 ] and DSSP [ 34 ] programs are also omitted .,Some proteins that are not available in HSSP [ 33 ] and DSSP [ 34 ] programs are also omitted . [SEP] B-Application [SEP] HSSP [SEP] B-Application [SEP] DSSP,Some proteins that are not available in HSSP [ 33 ] and DSSP [ 34 ] programs are also omitted . [SEP] B-Application [SEP] DSSP [SEP] B-Application [SEP] HSSP
7,13,B-Application [SEP] HSSP,B-Citation [SEP] [ 34 ],11,Some proteins that are not available in HSSP [ 33 ] and DSSP [ 34 ] programs are also omitted .,Some proteins that are not available in HSSP [ 33 ] and DSSP [ 34 ] programs are also omitted . [SEP] B-Application [SEP] HSSP [SEP] B-Citation [SEP] [ 34 ],Some proteins that are not available in HSSP [ 33 ] and DSSP [ 34 ] programs are also omitted . [SEP] B-Citation [SEP] [ 34 ] [SEP] B-Application [SEP] HSSP
8,7,B-Citation [SEP] [ 33 ],B-Application [SEP] HSSP,11,Some proteins that are not available in HSSP [ 33 ] and DSSP [ 34 ] programs are also omitted .,Some proteins that are not available in HSSP [ 33 ] and DSSP [ 34 ] programs are also omitted . [SEP] B-Citation [SEP] [ 33 ] [SEP] B-Application [SEP] HSSP,Some proteins that are not available in HSSP [ 33 ] and DSSP [ 34 ] programs are also omitted . [SEP] B-Application [SEP] HSSP [SEP] B-Citation [SEP] [ 33 ]
8,12,B-Citation [SEP] [ 33 ],B-Application [SEP] DSSP,11,Some proteins that are not available in HSSP [ 33 ] and DSSP [ 34 ] programs are also omitted .,Some proteins that are not available in HSSP [ 33 ] and DSSP [ 34 ] programs are also omitted . [SEP] B-Citation [SEP] [ 33 ] [SEP] B-Application [SEP] DSSP,Some proteins that are not available in HSSP [ 33 ] and DSSP [ 34 ] programs are also omitted . [SEP] B-Application [SEP] DSSP [SEP] B-Citation [SEP] [ 33 ]
8,13,B-Citation [SEP] [ 33 ],B-Citation [SEP] [ 34 ],11,Some proteins that are not available in HSSP [ 33 ] and DSSP [ 34 ] programs are also omitted .,Some proteins that are not available in HSSP [ 33 ] and DSSP [ 34 ] programs are also omitted . [SEP] B-Citation [SEP] [ 33 ] [SEP] B-Citation [SEP] [ 34 ],Some proteins that are not available in HSSP [ 33 ] and DSSP [ 34 ] programs are also omitted . [SEP] B-Citation [SEP] [ 34 ] [SEP] B-Citation [SEP] [ 33 ]
12,7,B-Application [SEP] DSSP,B-Application [SEP] HSSP,11,Some proteins that are not available in HSSP [ 33 ] and DSSP [ 34 ] programs are also omitted .,Some proteins that are not available in HSSP [ 33 ] and DSSP [ 34 ] programs are also omitted . [SEP] B-Application [SEP] DSSP [SEP] B-Application [SEP] HSSP,Some proteins that are not available in HSSP [ 33 ] and DSSP [ 34 ] programs are also omitted . [SEP] B-Application [SEP] HSSP [SEP] B-Application [SEP] DSSP
12,8,B-Application [SEP] DSSP,B-Citation [SEP] [ 33 ],11,Some proteins that are not available in HSSP [ 33 ] and DSSP [ 34 ] programs are also omitted .,Some proteins that are not available in HSSP [ 33 ] and DSSP [ 34 ] programs are also omitted . [SEP] B-Application [SEP] DSSP [SEP] B-Citation [SEP] [ 33 ],Some proteins that are not available in HSSP [ 33 ] and DSSP [ 34 ] programs are also omitted . [SEP] B-Citation [SEP] [ 33 ] [SEP] B-Application [SEP] DSSP
12,13,B-Application [SEP] DSSP,B-Citation [SEP] [ 34 ],11,Some proteins that are not available in HSSP [ 33 ] and DSSP [ 34 ] programs are also omitted .,Some proteins that are not available in HSSP [ 33 ] and DSSP [ 34 ] programs are also omitted . [SEP] B-Application [SEP] DSSP [SEP] B-Citation [SEP] [ 34 ],Some proteins that are not available in HSSP [ 33 ] and DSSP [ 34 ] programs are also omitted . [SEP] B-Citation [SEP] [ 34 ] [SEP] B-Application [SEP] DSSP
13,7,B-Citation [SEP] [ 34 ],B-Application [SEP] HSSP,11,Some proteins that are not available in HSSP [ 33 ] and DSSP [ 34 ] programs are also omitted .,Some proteins that are not available in HSSP [ 33 ] and DSSP [ 34 ] programs are also omitted . [SEP] B-Citation [SEP] [ 34 ] [SEP] B-Application [SEP] HSSP,Some proteins that are not available in HSSP [ 33 ] and DSSP [ 34 ] programs are also omitted . [SEP] B-Application [SEP] HSSP [SEP] B-Citation [SEP] [ 34 ]
13,8,B-Citation [SEP] [ 34 ],B-Citation [SEP] [ 33 ],11,Some proteins that are not available in HSSP [ 33 ] and DSSP [ 34 ] programs are also omitted .,Some proteins that are not available in HSSP [ 33 ] and DSSP [ 34 ] programs are also omitted . [SEP] B-Citation [SEP] [ 34 ] [SEP] B-Citation [SEP] [ 33 ],Some proteins that are not available in HSSP [ 33 ] and DSSP [ 34 ] programs are also omitted . [SEP] B-Citation [SEP] [ 33 ] [SEP] B-Citation [SEP] [ 34 ]
13,12,B-Citation [SEP] [ 34 ],B-Application [SEP] DSSP,11,Some proteins that are not available in HSSP [ 33 ] and DSSP [ 34 ] programs are also omitted .,Some proteins that are not available in HSSP [ 33 ] and DSSP [ 34 ] programs are also omitted . [SEP] B-Citation [SEP] [ 34 ] [SEP] B-Application [SEP] DSSP,Some proteins that are not available in HSSP [ 33 ] and DSSP [ 34 ] programs are also omitted . [SEP] B-Application [SEP] DSSP [SEP] B-Citation [SEP] [ 34 ]
22,24,B-Application [SEP] DSSP,B-Citation [SEP] [ 34 ],12,"The surface residues are defined based on their relative solvent accessible surface area ( RASA ) , which is calculated by the DSSP program [ 34 ] .","The surface residues are defined based on their relative solvent accessible surface area ( RASA ) , which is calculated by the DSSP program [ 34 ] . [SEP] B-Application [SEP] DSSP [SEP] B-Citation [SEP] [ 34 ]","The surface residues are defined based on their relative solvent accessible surface area ( RASA ) , which is calculated by the DSSP program [ 34 ] . [SEP] B-Citation [SEP] [ 34 ] [SEP] B-Application [SEP] DSSP"
24,22,B-Citation [SEP] [ 34 ],B-Application [SEP] DSSP,12,"The surface residues are defined based on their relative solvent accessible surface area ( RASA ) , which is calculated by the DSSP program [ 34 ] .","The surface residues are defined based on their relative solvent accessible surface area ( RASA ) , which is calculated by the DSSP program [ 34 ] . [SEP] B-Citation [SEP] [ 34 ] [SEP] B-Application [SEP] DSSP","The surface residues are defined based on their relative solvent accessible surface area ( RASA ) , which is calculated by the DSSP program [ 34 ] . [SEP] B-Application [SEP] DSSP [SEP] B-Citation [SEP] [ 34 ]"
39,40,B-Application [SEP] MUSCLE,B-Citation [SEP] [ 39 ],13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] MUSCLE [SEP] B-Citation [SEP] [ 39 ]","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 39 ] [SEP] B-Application [SEP] MUSCLE"
39,27,B-Application [SEP] MUSCLE,B-Application [SEP] PSI - BLAST,13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] MUSCLE [SEP] B-Application [SEP] PSI - BLAST","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] PSI - BLAST [SEP] B-Application [SEP] MUSCLE"
39,30,B-Application [SEP] MUSCLE,B-Citation [SEP] [ 38 ],13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] MUSCLE [SEP] B-Citation [SEP] [ 38 ]","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 38 ] [SEP] B-Application [SEP] MUSCLE"
39,19,B-Application [SEP] MUSCLE,B-Application [SEP] PDB,13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] MUSCLE [SEP] B-Application [SEP] PDB","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] PDB [SEP] B-Application [SEP] MUSCLE"
39,6,B-Application [SEP] MUSCLE,B-Citation [SEP] [ 36 ],13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] MUSCLE [SEP] B-Citation [SEP] [ 36 ]","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-Application [SEP] MUSCLE"
39,5,B-Application [SEP] MUSCLE,B-Application [SEP] ConSurf,13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] MUSCLE [SEP] B-Application [SEP] ConSurf","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] ConSurf [SEP] B-Application [SEP] MUSCLE"
39,20,B-Application [SEP] MUSCLE,B-Citation [SEP] [ 37 ],13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] MUSCLE [SEP] B-Citation [SEP] [ 37 ]","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 37 ] [SEP] B-Application [SEP] MUSCLE"
40,39,B-Citation [SEP] [ 39 ],B-Application [SEP] MUSCLE,13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 39 ] [SEP] B-Application [SEP] MUSCLE","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] MUSCLE [SEP] B-Citation [SEP] [ 39 ]"
40,27,B-Citation [SEP] [ 39 ],B-Application [SEP] PSI - BLAST,13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 39 ] [SEP] B-Application [SEP] PSI - BLAST","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] PSI - BLAST [SEP] B-Citation [SEP] [ 39 ]"
40,30,B-Citation [SEP] [ 39 ],B-Citation [SEP] [ 38 ],13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 39 ] [SEP] B-Citation [SEP] [ 38 ]","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 38 ] [SEP] B-Citation [SEP] [ 39 ]"
40,19,B-Citation [SEP] [ 39 ],B-Application [SEP] PDB,13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 39 ] [SEP] B-Application [SEP] PDB","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] PDB [SEP] B-Citation [SEP] [ 39 ]"
40,6,B-Citation [SEP] [ 39 ],B-Citation [SEP] [ 36 ],13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 39 ] [SEP] B-Citation [SEP] [ 36 ]","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-Citation [SEP] [ 39 ]"
40,5,B-Citation [SEP] [ 39 ],B-Application [SEP] ConSurf,13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 39 ] [SEP] B-Application [SEP] ConSurf","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] ConSurf [SEP] B-Citation [SEP] [ 39 ]"
40,20,B-Citation [SEP] [ 39 ],B-Citation [SEP] [ 37 ],13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 39 ] [SEP] B-Citation [SEP] [ 37 ]","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 37 ] [SEP] B-Citation [SEP] [ 39 ]"
27,39,B-Application [SEP] PSI - BLAST,B-Application [SEP] MUSCLE,13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] PSI - BLAST [SEP] B-Application [SEP] MUSCLE","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] MUSCLE [SEP] B-Application [SEP] PSI - BLAST"
27,40,B-Application [SEP] PSI - BLAST,B-Citation [SEP] [ 39 ],13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] PSI - BLAST [SEP] B-Citation [SEP] [ 39 ]","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 39 ] [SEP] B-Application [SEP] PSI - BLAST"
27,30,B-Application [SEP] PSI - BLAST,B-Citation [SEP] [ 38 ],13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] PSI - BLAST [SEP] B-Citation [SEP] [ 38 ]","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 38 ] [SEP] B-Application [SEP] PSI - BLAST"
27,19,B-Application [SEP] PSI - BLAST,B-Application [SEP] PDB,13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] PSI - BLAST [SEP] B-Application [SEP] PDB","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] PDB [SEP] B-Application [SEP] PSI - BLAST"
27,6,B-Application [SEP] PSI - BLAST,B-Citation [SEP] [ 36 ],13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] PSI - BLAST [SEP] B-Citation [SEP] [ 36 ]","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-Application [SEP] PSI - BLAST"
27,5,B-Application [SEP] PSI - BLAST,B-Application [SEP] ConSurf,13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] PSI - BLAST [SEP] B-Application [SEP] ConSurf","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] ConSurf [SEP] B-Application [SEP] PSI - BLAST"
27,20,B-Application [SEP] PSI - BLAST,B-Citation [SEP] [ 37 ],13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] PSI - BLAST [SEP] B-Citation [SEP] [ 37 ]","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 37 ] [SEP] B-Application [SEP] PSI - BLAST"
30,39,B-Citation [SEP] [ 38 ],B-Application [SEP] MUSCLE,13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 38 ] [SEP] B-Application [SEP] MUSCLE","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] MUSCLE [SEP] B-Citation [SEP] [ 38 ]"
30,40,B-Citation [SEP] [ 38 ],B-Citation [SEP] [ 39 ],13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 38 ] [SEP] B-Citation [SEP] [ 39 ]","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 39 ] [SEP] B-Citation [SEP] [ 38 ]"
30,27,B-Citation [SEP] [ 38 ],B-Application [SEP] PSI - BLAST,13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 38 ] [SEP] B-Application [SEP] PSI - BLAST","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] PSI - BLAST [SEP] B-Citation [SEP] [ 38 ]"
30,19,B-Citation [SEP] [ 38 ],B-Application [SEP] PDB,13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 38 ] [SEP] B-Application [SEP] PDB","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] PDB [SEP] B-Citation [SEP] [ 38 ]"
30,6,B-Citation [SEP] [ 38 ],B-Citation [SEP] [ 36 ],13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 38 ] [SEP] B-Citation [SEP] [ 36 ]","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-Citation [SEP] [ 38 ]"
30,5,B-Citation [SEP] [ 38 ],B-Application [SEP] ConSurf,13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 38 ] [SEP] B-Application [SEP] ConSurf","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] ConSurf [SEP] B-Citation [SEP] [ 38 ]"
30,20,B-Citation [SEP] [ 38 ],B-Citation [SEP] [ 37 ],13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 38 ] [SEP] B-Citation [SEP] [ 37 ]","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 37 ] [SEP] B-Citation [SEP] [ 38 ]"
19,39,B-Application [SEP] PDB,B-Application [SEP] MUSCLE,13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] PDB [SEP] B-Application [SEP] MUSCLE","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] MUSCLE [SEP] B-Application [SEP] PDB"
19,40,B-Application [SEP] PDB,B-Citation [SEP] [ 39 ],13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] PDB [SEP] B-Citation [SEP] [ 39 ]","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 39 ] [SEP] B-Application [SEP] PDB"
19,27,B-Application [SEP] PDB,B-Application [SEP] PSI - BLAST,13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] PDB [SEP] B-Application [SEP] PSI - BLAST","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] PSI - BLAST [SEP] B-Application [SEP] PDB"
19,30,B-Application [SEP] PDB,B-Citation [SEP] [ 38 ],13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] PDB [SEP] B-Citation [SEP] [ 38 ]","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 38 ] [SEP] B-Application [SEP] PDB"
19,6,B-Application [SEP] PDB,B-Citation [SEP] [ 36 ],13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] PDB [SEP] B-Citation [SEP] [ 36 ]","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-Application [SEP] PDB"
19,5,B-Application [SEP] PDB,B-Application [SEP] ConSurf,13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] PDB [SEP] B-Application [SEP] ConSurf","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] ConSurf [SEP] B-Application [SEP] PDB"
19,20,B-Application [SEP] PDB,B-Citation [SEP] [ 37 ],13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] PDB [SEP] B-Citation [SEP] [ 37 ]","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 37 ] [SEP] B-Application [SEP] PDB"
6,39,B-Citation [SEP] [ 36 ],B-Application [SEP] MUSCLE,13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-Application [SEP] MUSCLE","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] MUSCLE [SEP] B-Citation [SEP] [ 36 ]"
6,40,B-Citation [SEP] [ 36 ],B-Citation [SEP] [ 39 ],13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-Citation [SEP] [ 39 ]","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 39 ] [SEP] B-Citation [SEP] [ 36 ]"
6,27,B-Citation [SEP] [ 36 ],B-Application [SEP] PSI - BLAST,13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-Application [SEP] PSI - BLAST","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] PSI - BLAST [SEP] B-Citation [SEP] [ 36 ]"
6,30,B-Citation [SEP] [ 36 ],B-Citation [SEP] [ 38 ],13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-Citation [SEP] [ 38 ]","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 38 ] [SEP] B-Citation [SEP] [ 36 ]"
6,19,B-Citation [SEP] [ 36 ],B-Application [SEP] PDB,13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-Application [SEP] PDB","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] PDB [SEP] B-Citation [SEP] [ 36 ]"
6,5,B-Citation [SEP] [ 36 ],B-Application [SEP] ConSurf,13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-Application [SEP] ConSurf","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] ConSurf [SEP] B-Citation [SEP] [ 36 ]"
6,20,B-Citation [SEP] [ 36 ],B-Citation [SEP] [ 37 ],13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-Citation [SEP] [ 37 ]","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 37 ] [SEP] B-Citation [SEP] [ 36 ]"
5,39,B-Application [SEP] ConSurf,B-Application [SEP] MUSCLE,13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] ConSurf [SEP] B-Application [SEP] MUSCLE","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] MUSCLE [SEP] B-Application [SEP] ConSurf"
5,40,B-Application [SEP] ConSurf,B-Citation [SEP] [ 39 ],13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] ConSurf [SEP] B-Citation [SEP] [ 39 ]","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 39 ] [SEP] B-Application [SEP] ConSurf"
5,27,B-Application [SEP] ConSurf,B-Application [SEP] PSI - BLAST,13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] ConSurf [SEP] B-Application [SEP] PSI - BLAST","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] PSI - BLAST [SEP] B-Application [SEP] ConSurf"
5,30,B-Application [SEP] ConSurf,B-Citation [SEP] [ 38 ],13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] ConSurf [SEP] B-Citation [SEP] [ 38 ]","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 38 ] [SEP] B-Application [SEP] ConSurf"
5,19,B-Application [SEP] ConSurf,B-Application [SEP] PDB,13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] ConSurf [SEP] B-Application [SEP] PDB","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] PDB [SEP] B-Application [SEP] ConSurf"
5,6,B-Application [SEP] ConSurf,B-Citation [SEP] [ 36 ],13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] ConSurf [SEP] B-Citation [SEP] [ 36 ]","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-Application [SEP] ConSurf"
5,20,B-Application [SEP] ConSurf,B-Citation [SEP] [ 37 ],13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] ConSurf [SEP] B-Citation [SEP] [ 37 ]","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 37 ] [SEP] B-Application [SEP] ConSurf"
20,39,B-Citation [SEP] [ 37 ],B-Application [SEP] MUSCLE,13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 37 ] [SEP] B-Application [SEP] MUSCLE","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] MUSCLE [SEP] B-Citation [SEP] [ 37 ]"
20,40,B-Citation [SEP] [ 37 ],B-Citation [SEP] [ 39 ],13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 37 ] [SEP] B-Citation [SEP] [ 39 ]","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 39 ] [SEP] B-Citation [SEP] [ 37 ]"
20,27,B-Citation [SEP] [ 37 ],B-Application [SEP] PSI - BLAST,13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 37 ] [SEP] B-Application [SEP] PSI - BLAST","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] PSI - BLAST [SEP] B-Citation [SEP] [ 37 ]"
20,30,B-Citation [SEP] [ 37 ],B-Citation [SEP] [ 38 ],13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 37 ] [SEP] B-Citation [SEP] [ 38 ]","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 38 ] [SEP] B-Citation [SEP] [ 37 ]"
20,19,B-Citation [SEP] [ 37 ],B-Application [SEP] PDB,13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 37 ] [SEP] B-Application [SEP] PDB","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] PDB [SEP] B-Citation [SEP] [ 37 ]"
20,6,B-Citation [SEP] [ 37 ],B-Citation [SEP] [ 36 ],13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 37 ] [SEP] B-Citation [SEP] [ 36 ]","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-Citation [SEP] [ 37 ]"
20,5,B-Citation [SEP] [ 37 ],B-Application [SEP] ConSurf,13,"Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] .","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Citation [SEP] [ 37 ] [SEP] B-Application [SEP] ConSurf","Following the method used by ConSurf [ 36 ] , amino acid sequences similar to each other in the PDB [ 37 ] are collected by using PSI - BLAST [ 38 ] and then multiple aligned by using MUSCLE [ 39 ] . [SEP] B-Application [SEP] ConSurf [SEP] B-Citation [SEP] [ 37 ]"
9,11,B-Application [SEP] HSSP,B-Citation [SEP] [ 33 ],15,Sequence entropy values for residues are extracted from the HSSP database [ 33 ] .,Sequence entropy values for residues are extracted from the HSSP database [ 33 ] . [SEP] B-Application [SEP] HSSP [SEP] B-Citation [SEP] [ 33 ],Sequence entropy values for residues are extracted from the HSSP database [ 33 ] . [SEP] B-Citation [SEP] [ 33 ] [SEP] B-Application [SEP] HSSP
11,9,B-Citation [SEP] [ 33 ],B-Application [SEP] HSSP,15,Sequence entropy values for residues are extracted from the HSSP database [ 33 ] .,Sequence entropy values for residues are extracted from the HSSP database [ 33 ] . [SEP] B-Citation [SEP] [ 33 ] [SEP] B-Application [SEP] HSSP,Sequence entropy values for residues are extracted from the HSSP database [ 33 ] . [SEP] B-Application [SEP] HSSP [SEP] B-Citation [SEP] [ 33 ]
9,12,B-Application [SEP] PSI - BLAST,B-Citation [SEP] [ 38 ],16,"PSSMs are taken from multiple sequence alignment obtained by PSI - BLAST [ 38 ] searching against NCBI non - redundant database ftp://ftp.ncbi.nih.gov/blast/db/ , with parameters j = 3 and e = 0 . 001 .","PSSMs are taken from multiple sequence alignment obtained by PSI - BLAST [ 38 ] searching against NCBI non - redundant database ftp://ftp.ncbi.nih.gov/blast/db/ , with parameters j = 3 and e = 0 . 001 . [SEP] B-Application [SEP] PSI - BLAST [SEP] B-Citation [SEP] [ 38 ]","PSSMs are taken from multiple sequence alignment obtained by PSI - BLAST [ 38 ] searching against NCBI non - redundant database ftp://ftp.ncbi.nih.gov/blast/db/ , with parameters j = 3 and e = 0 . 001 . [SEP] B-Citation [SEP] [ 38 ] [SEP] B-Application [SEP] PSI - BLAST"
12,9,B-Citation [SEP] [ 38 ],B-Application [SEP] PSI - BLAST,16,"PSSMs are taken from multiple sequence alignment obtained by PSI - BLAST [ 38 ] searching against NCBI non - redundant database ftp://ftp.ncbi.nih.gov/blast/db/ , with parameters j = 3 and e = 0 . 001 .","PSSMs are taken from multiple sequence alignment obtained by PSI - BLAST [ 38 ] searching against NCBI non - redundant database ftp://ftp.ncbi.nih.gov/blast/db/ , with parameters j = 3 and e = 0 . 001 . [SEP] B-Citation [SEP] [ 38 ] [SEP] B-Application [SEP] PSI - BLAST","PSSMs are taken from multiple sequence alignment obtained by PSI - BLAST [ 38 ] searching against NCBI non - redundant database ftp://ftp.ncbi.nih.gov/blast/db/ , with parameters j = 3 and e = 0 . 001 . [SEP] B-Application [SEP] PSI - BLAST [SEP] B-Citation [SEP] [ 38 ]"
14,16,B-Application [SEP] DSSP,B-Citation [SEP] [ 34 ],17,"ASA features represent the relative accessible surface areas , which are calculated by using DSSP program [ 34 ] for each residue in the unbound state .","ASA features represent the relative accessible surface areas , which are calculated by using DSSP program [ 34 ] for each residue in the unbound state . [SEP] B-Application [SEP] DSSP [SEP] B-Citation [SEP] [ 34 ]","ASA features represent the relative accessible surface areas , which are calculated by using DSSP program [ 34 ] for each residue in the unbound state . [SEP] B-Citation [SEP] [ 34 ] [SEP] B-Application [SEP] DSSP"
16,14,B-Citation [SEP] [ 34 ],B-Application [SEP] DSSP,17,"ASA features represent the relative accessible surface areas , which are calculated by using DSSP program [ 34 ] for each residue in the unbound state .","ASA features represent the relative accessible surface areas , which are calculated by using DSSP program [ 34 ] for each residue in the unbound state . [SEP] B-Citation [SEP] [ 34 ] [SEP] B-Application [SEP] DSSP","ASA features represent the relative accessible surface areas , which are calculated by using DSSP program [ 34 ] for each residue in the unbound state . [SEP] B-Application [SEP] DSSP [SEP] B-Citation [SEP] [ 34 ]"
4,2,B-Version [SEP] 2 . 8,B-PlugIn [SEP] LIBSVM,18,Here the LIBSVM package 2 . 8 http://www.csie.ntu.edu.tw/~cjlin/libsvm/ is used with radial basis function as the kernel .,Here the LIBSVM package 2 . 8 http://www.csie.ntu.edu.tw/~cjlin/libsvm/ is used with radial basis function as the kernel . [SEP] B-Version [SEP] 2 . 8 [SEP] B-PlugIn [SEP] LIBSVM,Here the LIBSVM package 2 . 8 http://www.csie.ntu.edu.tw/~cjlin/libsvm/ is used with radial basis function as the kernel . [SEP] B-PlugIn [SEP] LIBSVM [SEP] B-Version [SEP] 2 . 8
4,7,B-Version [SEP] 2 . 8,B-URL [SEP] http://www.csie.ntu.edu.tw/~cjlin/libsvm/,18,Here the LIBSVM package 2 . 8 http://www.csie.ntu.edu.tw/~cjlin/libsvm/ is used with radial basis function as the kernel .,Here the LIBSVM package 2 . 8 http://www.csie.ntu.edu.tw/~cjlin/libsvm/ is used with radial basis function as the kernel . [SEP] B-Version [SEP] 2 . 8 [SEP] B-URL [SEP] http://www.csie.ntu.edu.tw/~cjlin/libsvm/,Here the LIBSVM package 2 . 8 http://www.csie.ntu.edu.tw/~cjlin/libsvm/ is used with radial basis function as the kernel . [SEP] B-URL [SEP] http://www.csie.ntu.edu.tw/~cjlin/libsvm/ [SEP] B-Version [SEP] 2 . 8
2,4,B-PlugIn [SEP] LIBSVM,B-Version [SEP] 2 . 8,18,Here the LIBSVM package 2 . 8 http://www.csie.ntu.edu.tw/~cjlin/libsvm/ is used with radial basis function as the kernel .,Here the LIBSVM package 2 . 8 http://www.csie.ntu.edu.tw/~cjlin/libsvm/ is used with radial basis function as the kernel . [SEP] B-PlugIn [SEP] LIBSVM [SEP] B-Version [SEP] 2 . 8,Here the LIBSVM package 2 . 8 http://www.csie.ntu.edu.tw/~cjlin/libsvm/ is used with radial basis function as the kernel . [SEP] B-Version [SEP] 2 . 8 [SEP] B-PlugIn [SEP] LIBSVM
2,7,B-PlugIn [SEP] LIBSVM,B-URL [SEP] http://www.csie.ntu.edu.tw/~cjlin/libsvm/,18,Here the LIBSVM package 2 . 8 http://www.csie.ntu.edu.tw/~cjlin/libsvm/ is used with radial basis function as the kernel .,Here the LIBSVM package 2 . 8 http://www.csie.ntu.edu.tw/~cjlin/libsvm/ is used with radial basis function as the kernel . [SEP] B-PlugIn [SEP] LIBSVM [SEP] B-URL [SEP] http://www.csie.ntu.edu.tw/~cjlin/libsvm/,Here the LIBSVM package 2 . 8 http://www.csie.ntu.edu.tw/~cjlin/libsvm/ is used with radial basis function as the kernel . [SEP] B-URL [SEP] http://www.csie.ntu.edu.tw/~cjlin/libsvm/ [SEP] B-PlugIn [SEP] LIBSVM
7,4,B-URL [SEP] http://www.csie.ntu.edu.tw/~cjlin/libsvm/,B-Version [SEP] 2 . 8,18,Here the LIBSVM package 2 . 8 http://www.csie.ntu.edu.tw/~cjlin/libsvm/ is used with radial basis function as the kernel .,Here the LIBSVM package 2 . 8 http://www.csie.ntu.edu.tw/~cjlin/libsvm/ is used with radial basis function as the kernel . [SEP] B-URL [SEP] http://www.csie.ntu.edu.tw/~cjlin/libsvm/ [SEP] B-Version [SEP] 2 . 8,Here the LIBSVM package 2 . 8 http://www.csie.ntu.edu.tw/~cjlin/libsvm/ is used with radial basis function as the kernel . [SEP] B-Version [SEP] 2 . 8 [SEP] B-URL [SEP] http://www.csie.ntu.edu.tw/~cjlin/libsvm/
7,2,B-URL [SEP] http://www.csie.ntu.edu.tw/~cjlin/libsvm/,B-PlugIn [SEP] LIBSVM,18,Here the LIBSVM package 2 . 8 http://www.csie.ntu.edu.tw/~cjlin/libsvm/ is used with radial basis function as the kernel .,Here the LIBSVM package 2 . 8 http://www.csie.ntu.edu.tw/~cjlin/libsvm/ is used with radial basis function as the kernel . [SEP] B-URL [SEP] http://www.csie.ntu.edu.tw/~cjlin/libsvm/ [SEP] B-PlugIn [SEP] LIBSVM,Here the LIBSVM package 2 . 8 http://www.csie.ntu.edu.tw/~cjlin/libsvm/ is used with radial basis function as the kernel . [SEP] B-PlugIn [SEP] LIBSVM [SEP] B-URL [SEP] http://www.csie.ntu.edu.tw/~cjlin/libsvm/
27,25,B-Citation [SEP] the RasMol software,B-Application [SEP] by,19,"Finally , a test on protein complex 1IAI ( PDB code ) is conducted as an example to further illustrate the effectiveness of our approach by using the RasMol software [ 49 ] .","Finally , a test on protein complex 1IAI ( PDB code ) is conducted as an example to further illustrate the effectiveness of our approach by using the RasMol software [ 49 ] . [SEP] B-Citation [SEP] the RasMol software [SEP] B-Application [SEP] by","Finally , a test on protein complex 1IAI ( PDB code ) is conducted as an example to further illustrate the effectiveness of our approach by using the RasMol software [ 49 ] . [SEP] B-Application [SEP] by [SEP] B-Citation [SEP] the RasMol software"
25,27,B-Application [SEP] by,B-Citation [SEP] the RasMol software,19,"Finally , a test on protein complex 1IAI ( PDB code ) is conducted as an example to further illustrate the effectiveness of our approach by using the RasMol software [ 49 ] .","Finally , a test on protein complex 1IAI ( PDB code ) is conducted as an example to further illustrate the effectiveness of our approach by using the RasMol software [ 49 ] . [SEP] B-Application [SEP] by [SEP] B-Citation [SEP] the RasMol software","Finally , a test on protein complex 1IAI ( PDB code ) is conducted as an example to further illustrate the effectiveness of our approach by using the RasMol software [ 49 ] . [SEP] B-Citation [SEP] the RasMol software [SEP] B-Application [SEP] by"
9,3,B-URL [SEP] www.expasy.org/swissvar,B-Application [SEP] Swiss Var,20,Availability : The Swiss Var portal is available at www.expasy.org/swissvar .,Availability : The Swiss Var portal is available at www.expasy.org/swissvar . [SEP] B-URL [SEP] www.expasy.org/swissvar [SEP] B-Application [SEP] Swiss Var,Availability : The Swiss Var portal is available at www.expasy.org/swissvar . [SEP] B-Application [SEP] Swiss Var [SEP] B-URL [SEP] www.expasy.org/swissvar
3,9,B-Application [SEP] Swiss Var,B-URL [SEP] www.expasy.org/swissvar,20,Availability : The Swiss Var portal is available at www.expasy.org/swissvar .,Availability : The Swiss Var portal is available at www.expasy.org/swissvar . [SEP] B-Application [SEP] Swiss Var [SEP] B-URL [SEP] www.expasy.org/swissvar,Availability : The Swiss Var portal is available at www.expasy.org/swissvar . [SEP] B-URL [SEP] www.expasy.org/swissvar [SEP] B-Application [SEP] Swiss Var
7,10,B-Application [SEP] SwissVar,B-URL [SEP] www.expasy.org/swissvar,21,"In this article , we present the SwissVar portal ( www.expasy.org/swissvar ) , which provides access to a comprehensive collection of single amino acid polymorphisms ( SAPs ) and diseases in the UniProtKB / Swiss - Prot knowledgebase via a unique search engine .","In this article , we present the SwissVar portal ( www.expasy.org/swissvar ) , which provides access to a comprehensive collection of single amino acid polymorphisms ( SAPs ) and diseases in the UniProtKB / Swiss - Prot knowledgebase via a unique search engine . [SEP] B-Application [SEP] SwissVar [SEP] B-URL [SEP] www.expasy.org/swissvar","In this article , we present the SwissVar portal ( www.expasy.org/swissvar ) , which provides access to a comprehensive collection of single amino acid polymorphisms ( SAPs ) and diseases in the UniProtKB / Swiss - Prot knowledgebase via a unique search engine . [SEP] B-URL [SEP] www.expasy.org/swissvar [SEP] B-Application [SEP] SwissVar"
7,32,B-Application [SEP] SwissVar,B-Application [SEP] UniProtKB,21,"In this article , we present the SwissVar portal ( www.expasy.org/swissvar ) , which provides access to a comprehensive collection of single amino acid polymorphisms ( SAPs ) and diseases in the UniProtKB / Swiss - Prot knowledgebase via a unique search engine .","In this article , we present the SwissVar portal ( www.expasy.org/swissvar ) , which provides access to a comprehensive collection of single amino acid polymorphisms ( SAPs ) and diseases in the UniProtKB / Swiss - Prot knowledgebase via a unique search engine . [SEP] B-Application [SEP] SwissVar [SEP] B-Application [SEP] UniProtKB","In this article , we present the SwissVar portal ( www.expasy.org/swissvar ) , which provides access to a comprehensive collection of single amino acid polymorphisms ( SAPs ) and diseases in the UniProtKB / Swiss - Prot knowledgebase via a unique search engine . [SEP] B-Application [SEP] UniProtKB [SEP] B-Application [SEP] SwissVar"
7,34,B-Application [SEP] SwissVar,B-Application [SEP] Swiss -,21,"In this article , we present the SwissVar portal ( www.expasy.org/swissvar ) , which provides access to a comprehensive collection of single amino acid polymorphisms ( SAPs ) and diseases in the UniProtKB / Swiss - Prot knowledgebase via a unique search engine .","In this article , we present the SwissVar portal ( www.expasy.org/swissvar ) , which provides access to a comprehensive collection of single amino acid polymorphisms ( SAPs ) and diseases in the UniProtKB / Swiss - Prot knowledgebase via a unique search engine . [SEP] B-Application [SEP] SwissVar [SEP] B-Application [SEP] Swiss -","In this article , we present the SwissVar portal ( www.expasy.org/swissvar ) , which provides access to a comprehensive collection of single amino acid polymorphisms ( SAPs ) and diseases in the UniProtKB / Swiss - Prot knowledgebase via a unique search engine . [SEP] B-Application [SEP] Swiss - [SEP] B-Application [SEP] SwissVar"
10,7,B-URL [SEP] www.expasy.org/swissvar,B-Application [SEP] SwissVar,21,"In this article , we present the SwissVar portal ( www.expasy.org/swissvar ) , which provides access to a comprehensive collection of single amino acid polymorphisms ( SAPs ) and diseases in the UniProtKB / Swiss - Prot knowledgebase via a unique search engine .","In this article , we present the SwissVar portal ( www.expasy.org/swissvar ) , which provides access to a comprehensive collection of single amino acid polymorphisms ( SAPs ) and diseases in the UniProtKB / Swiss - Prot knowledgebase via a unique search engine . [SEP] B-URL [SEP] www.expasy.org/swissvar [SEP] B-Application [SEP] SwissVar","In this article , we present the SwissVar portal ( www.expasy.org/swissvar ) , which provides access to a comprehensive collection of single amino acid polymorphisms ( SAPs ) and diseases in the UniProtKB / Swiss - Prot knowledgebase via a unique search engine . [SEP] B-Application [SEP] SwissVar [SEP] B-URL [SEP] www.expasy.org/swissvar"
10,32,B-URL [SEP] www.expasy.org/swissvar,B-Application [SEP] UniProtKB,21,"In this article , we present the SwissVar portal ( www.expasy.org/swissvar ) , which provides access to a comprehensive collection of single amino acid polymorphisms ( SAPs ) and diseases in the UniProtKB / Swiss - Prot knowledgebase via a unique search engine .","In this article , we present the SwissVar portal ( www.expasy.org/swissvar ) , which provides access to a comprehensive collection of single amino acid polymorphisms ( SAPs ) and diseases in the UniProtKB / Swiss - Prot knowledgebase via a unique search engine . [SEP] B-URL [SEP] www.expasy.org/swissvar [SEP] B-Application [SEP] UniProtKB","In this article , we present the SwissVar portal ( www.expasy.org/swissvar ) , which provides access to a comprehensive collection of single amino acid polymorphisms ( SAPs ) and diseases in the UniProtKB / Swiss - Prot knowledgebase via a unique search engine . [SEP] B-Application [SEP] UniProtKB [SEP] B-URL [SEP] www.expasy.org/swissvar"
10,34,B-URL [SEP] www.expasy.org/swissvar,B-Application [SEP] Swiss -,21,"In this article , we present the SwissVar portal ( www.expasy.org/swissvar ) , which provides access to a comprehensive collection of single amino acid polymorphisms ( SAPs ) and diseases in the UniProtKB / Swiss - Prot knowledgebase via a unique search engine .","In this article , we present the SwissVar portal ( www.expasy.org/swissvar ) , which provides access to a comprehensive collection of single amino acid polymorphisms ( SAPs ) and diseases in the UniProtKB / Swiss - Prot knowledgebase via a unique search engine . [SEP] B-URL [SEP] www.expasy.org/swissvar [SEP] B-Application [SEP] Swiss -","In this article , we present the SwissVar portal ( www.expasy.org/swissvar ) , which provides access to a comprehensive collection of single amino acid polymorphisms ( SAPs ) and diseases in the UniProtKB / Swiss - Prot knowledgebase via a unique search engine . [SEP] B-Application [SEP] Swiss - [SEP] B-URL [SEP] www.expasy.org/swissvar"
32,7,B-Application [SEP] UniProtKB,B-Application [SEP] SwissVar,21,"In this article , we present the SwissVar portal ( www.expasy.org/swissvar ) , which provides access to a comprehensive collection of single amino acid polymorphisms ( SAPs ) and diseases in the UniProtKB / Swiss - Prot knowledgebase via a unique search engine .","In this article , we present the SwissVar portal ( www.expasy.org/swissvar ) , which provides access to a comprehensive collection of single amino acid polymorphisms ( SAPs ) and diseases in the UniProtKB / Swiss - Prot knowledgebase via a unique search engine . [SEP] B-Application [SEP] UniProtKB [SEP] B-Application [SEP] SwissVar","In this article , we present the SwissVar portal ( www.expasy.org/swissvar ) , which provides access to a comprehensive collection of single amino acid polymorphisms ( SAPs ) and diseases in the UniProtKB / Swiss - Prot knowledgebase via a unique search engine . [SEP] B-Application [SEP] SwissVar [SEP] B-Application [SEP] UniProtKB"
32,10,B-Application [SEP] UniProtKB,B-URL [SEP] www.expasy.org/swissvar,21,"In this article , we present the SwissVar portal ( www.expasy.org/swissvar ) , which provides access to a comprehensive collection of single amino acid polymorphisms ( SAPs ) and diseases in the UniProtKB / Swiss - Prot knowledgebase via a unique search engine .","In this article , we present the SwissVar portal ( www.expasy.org/swissvar ) , which provides access to a comprehensive collection of single amino acid polymorphisms ( SAPs ) and diseases in the UniProtKB / Swiss - Prot knowledgebase via a unique search engine . [SEP] B-Application [SEP] UniProtKB [SEP] B-URL [SEP] www.expasy.org/swissvar","In this article , we present the SwissVar portal ( www.expasy.org/swissvar ) , which provides access to a comprehensive collection of single amino acid polymorphisms ( SAPs ) and diseases in the UniProtKB / Swiss - Prot knowledgebase via a unique search engine . [SEP] B-URL [SEP] www.expasy.org/swissvar [SEP] B-Application [SEP] UniProtKB"
32,34,B-Application [SEP] UniProtKB,B-Application [SEP] Swiss -,21,"In this article , we present the SwissVar portal ( www.expasy.org/swissvar ) , which provides access to a comprehensive collection of single amino acid polymorphisms ( SAPs ) and diseases in the UniProtKB / Swiss - Prot knowledgebase via a unique search engine .","In this article , we present the SwissVar portal ( www.expasy.org/swissvar ) , which provides access to a comprehensive collection of single amino acid polymorphisms ( SAPs ) and diseases in the UniProtKB / Swiss - Prot knowledgebase via a unique search engine . [SEP] B-Application [SEP] UniProtKB [SEP] B-Application [SEP] Swiss -","In this article , we present the SwissVar portal ( www.expasy.org/swissvar ) , which provides access to a comprehensive collection of single amino acid polymorphisms ( SAPs ) and diseases in the UniProtKB / Swiss - Prot knowledgebase via a unique search engine . [SEP] B-Application [SEP] Swiss - [SEP] B-Application [SEP] UniProtKB"
34,7,B-Application [SEP] Swiss -,B-Application [SEP] SwissVar,21,"In this article , we present the SwissVar portal ( www.expasy.org/swissvar ) , which provides access to a comprehensive collection of single amino acid polymorphisms ( SAPs ) and diseases in the UniProtKB / Swiss - Prot knowledgebase via a unique search engine .","In this article , we present the SwissVar portal ( www.expasy.org/swissvar ) , which provides access to a comprehensive collection of single amino acid polymorphisms ( SAPs ) and diseases in the UniProtKB / Swiss - Prot knowledgebase via a unique search engine . [SEP] B-Application [SEP] Swiss - [SEP] B-Application [SEP] SwissVar","In this article , we present the SwissVar portal ( www.expasy.org/swissvar ) , which provides access to a comprehensive collection of single amino acid polymorphisms ( SAPs ) and diseases in the UniProtKB / Swiss - Prot knowledgebase via a unique search engine . [SEP] B-Application [SEP] SwissVar [SEP] B-Application [SEP] Swiss -"
34,10,B-Application [SEP] Swiss -,B-URL [SEP] www.expasy.org/swissvar,21,"In this article , we present the SwissVar portal ( www.expasy.org/swissvar ) , which provides access to a comprehensive collection of single amino acid polymorphisms ( SAPs ) and diseases in the UniProtKB / Swiss - Prot knowledgebase via a unique search engine .","In this article , we present the SwissVar portal ( www.expasy.org/swissvar ) , which provides access to a comprehensive collection of single amino acid polymorphisms ( SAPs ) and diseases in the UniProtKB / Swiss - Prot knowledgebase via a unique search engine . [SEP] B-Application [SEP] Swiss - [SEP] B-URL [SEP] www.expasy.org/swissvar","In this article , we present the SwissVar portal ( www.expasy.org/swissvar ) , which provides access to a comprehensive collection of single amino acid polymorphisms ( SAPs ) and diseases in the UniProtKB / Swiss - Prot knowledgebase via a unique search engine . [SEP] B-URL [SEP] www.expasy.org/swissvar [SEP] B-Application [SEP] Swiss -"
34,32,B-Application [SEP] Swiss -,B-Application [SEP] UniProtKB,21,"In this article , we present the SwissVar portal ( www.expasy.org/swissvar ) , which provides access to a comprehensive collection of single amino acid polymorphisms ( SAPs ) and diseases in the UniProtKB / Swiss - Prot knowledgebase via a unique search engine .","In this article , we present the SwissVar portal ( www.expasy.org/swissvar ) , which provides access to a comprehensive collection of single amino acid polymorphisms ( SAPs ) and diseases in the UniProtKB / Swiss - Prot knowledgebase via a unique search engine . [SEP] B-Application [SEP] Swiss - [SEP] B-Application [SEP] UniProtKB","In this article , we present the SwissVar portal ( www.expasy.org/swissvar ) , which provides access to a comprehensive collection of single amino acid polymorphisms ( SAPs ) and diseases in the UniProtKB / Swiss - Prot knowledgebase via a unique search engine . [SEP] B-Application [SEP] UniProtKB [SEP] B-Application [SEP] Swiss -"
5,6,B-Application [SEP] PostgreSQL,B-Version [SEP] 8 . 1 . 9,22,The databases are implemented in PostgreSQL 8 . 1 . 9 and are updated at each UniProt release .,The databases are implemented in PostgreSQL 8 . 1 . 9 and are updated at each UniProt release . [SEP] B-Application [SEP] PostgreSQL [SEP] B-Version [SEP] 8 . 1 . 9,The databases are implemented in PostgreSQL 8 . 1 . 9 and are updated at each UniProt release . [SEP] B-Version [SEP] 8 . 1 . 9 [SEP] B-Application [SEP] PostgreSQL
6,5,B-Version [SEP] 8 . 1 . 9,B-Application [SEP] PostgreSQL,22,The databases are implemented in PostgreSQL 8 . 1 . 9 and are updated at each UniProt release .,The databases are implemented in PostgreSQL 8 . 1 . 9 and are updated at each UniProt release . [SEP] B-Version [SEP] 8 . 1 . 9 [SEP] B-Application [SEP] PostgreSQL,The databases are implemented in PostgreSQL 8 . 1 . 9 and are updated at each UniProt release . [SEP] B-Application [SEP] PostgreSQL [SEP] B-Version [SEP] 8 . 1 . 9
1,7,B-Application [SEP] SwissVar,B-URL [SEP] www.expasy.org/swissvar,23,The SwissVar portal can be accessed via www.expasy.org/swissvar .,The SwissVar portal can be accessed via www.expasy.org/swissvar . [SEP] B-Application [SEP] SwissVar [SEP] B-URL [SEP] www.expasy.org/swissvar,The SwissVar portal can be accessed via www.expasy.org/swissvar . [SEP] B-URL [SEP] www.expasy.org/swissvar [SEP] B-Application [SEP] SwissVar
7,1,B-URL [SEP] www.expasy.org/swissvar,B-Application [SEP] SwissVar,23,The SwissVar portal can be accessed via www.expasy.org/swissvar .,The SwissVar portal can be accessed via www.expasy.org/swissvar . [SEP] B-URL [SEP] www.expasy.org/swissvar [SEP] B-Application [SEP] SwissVar,The SwissVar portal can be accessed via www.expasy.org/swissvar . [SEP] B-Application [SEP] SwissVar [SEP] B-URL [SEP] www.expasy.org/swissvar
5,8,B-Application [SEP] semantic,B-Application [SEP] SemRep,24,"We have been developing a semantic interpreter , SemRep [ 19 ] , which extracts content from biomedical text in the form of semantic predications .","We have been developing a semantic interpreter , SemRep [ 19 ] , which extracts content from biomedical text in the form of semantic predications . [SEP] B-Application [SEP] semantic [SEP] B-Application [SEP] SemRep","We have been developing a semantic interpreter , SemRep [ 19 ] , which extracts content from biomedical text in the form of semantic predications . [SEP] B-Application [SEP] SemRep [SEP] B-Application [SEP] semantic"
5,9,B-Application [SEP] semantic,B-Citation [SEP] [ 19 ],24,"We have been developing a semantic interpreter , SemRep [ 19 ] , which extracts content from biomedical text in the form of semantic predications .","We have been developing a semantic interpreter , SemRep [ 19 ] , which extracts content from biomedical text in the form of semantic predications . [SEP] B-Application [SEP] semantic [SEP] B-Citation [SEP] [ 19 ]","We have been developing a semantic interpreter , SemRep [ 19 ] , which extracts content from biomedical text in the form of semantic predications . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Application [SEP] semantic"
8,5,B-Application [SEP] SemRep,B-Application [SEP] semantic,24,"We have been developing a semantic interpreter , SemRep [ 19 ] , which extracts content from biomedical text in the form of semantic predications .","We have been developing a semantic interpreter , SemRep [ 19 ] , which extracts content from biomedical text in the form of semantic predications . [SEP] B-Application [SEP] SemRep [SEP] B-Application [SEP] semantic","We have been developing a semantic interpreter , SemRep [ 19 ] , which extracts content from biomedical text in the form of semantic predications . [SEP] B-Application [SEP] semantic [SEP] B-Application [SEP] SemRep"
8,9,B-Application [SEP] SemRep,B-Citation [SEP] [ 19 ],24,"We have been developing a semantic interpreter , SemRep [ 19 ] , which extracts content from biomedical text in the form of semantic predications .","We have been developing a semantic interpreter , SemRep [ 19 ] , which extracts content from biomedical text in the form of semantic predications . [SEP] B-Application [SEP] SemRep [SEP] B-Citation [SEP] [ 19 ]","We have been developing a semantic interpreter , SemRep [ 19 ] , which extracts content from biomedical text in the form of semantic predications . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Application [SEP] SemRep"
9,5,B-Citation [SEP] [ 19 ],B-Application [SEP] semantic,24,"We have been developing a semantic interpreter , SemRep [ 19 ] , which extracts content from biomedical text in the form of semantic predications .","We have been developing a semantic interpreter , SemRep [ 19 ] , which extracts content from biomedical text in the form of semantic predications . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Application [SEP] semantic","We have been developing a semantic interpreter , SemRep [ 19 ] , which extracts content from biomedical text in the form of semantic predications . [SEP] B-Application [SEP] semantic [SEP] B-Citation [SEP] [ 19 ]"
9,8,B-Citation [SEP] [ 19 ],B-Application [SEP] SemRep,24,"We have been developing a semantic interpreter , SemRep [ 19 ] , which extracts content from biomedical text in the form of semantic predications .","We have been developing a semantic interpreter , SemRep [ 19 ] , which extracts content from biomedical text in the form of semantic predications . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Application [SEP] SemRep","We have been developing a semantic interpreter , SemRep [ 19 ] , which extracts content from biomedical text in the form of semantic predications . [SEP] B-Application [SEP] SemRep [SEP] B-Citation [SEP] [ 19 ]"
21,2,B-Citation [SEP] SemRep uses [,B-Application [SEP] UMLS Semantic Network,25,"While the UMLS Semantic Network has not been designed as an ontology in a strict sense , the extended version that SemRep uses [ 21 ] serves as an ontological resource:itdefinesadomainmodelconsistingofconcepttypes ( semantic types ) , relation types ( ontological predicates ) and the relationships that can hold between concept types ( ontological predications ) .","While the UMLS Semantic Network has not been designed as an ontology in a strict sense , the extended version that SemRep uses [ 21 ] serves as an ontological resource:itdefinesadomainmodelconsistingofconcepttypes ( semantic types ) , relation types ( ontological predicates ) and the relationships that can hold between concept types ( ontological predications ) . [SEP] B-Citation [SEP] SemRep uses [ [SEP] B-Application [SEP] UMLS Semantic Network","While the UMLS Semantic Network has not been designed as an ontology in a strict sense , the extended version that SemRep uses [ 21 ] serves as an ontological resource:itdefinesadomainmodelconsistingofconcepttypes ( semantic types ) , relation types ( ontological predicates ) and the relationships that can hold between concept types ( ontological predications ) . [SEP] B-Application [SEP] UMLS Semantic Network [SEP] B-Citation [SEP] SemRep uses ["
21,19,B-Citation [SEP] SemRep uses [,B-Application [SEP] version,25,"While the UMLS Semantic Network has not been designed as an ontology in a strict sense , the extended version that SemRep uses [ 21 ] serves as an ontological resource:itdefinesadomainmodelconsistingofconcepttypes ( semantic types ) , relation types ( ontological predicates ) and the relationships that can hold between concept types ( ontological predications ) .","While the UMLS Semantic Network has not been designed as an ontology in a strict sense , the extended version that SemRep uses [ 21 ] serves as an ontological resource:itdefinesadomainmodelconsistingofconcepttypes ( semantic types ) , relation types ( ontological predicates ) and the relationships that can hold between concept types ( ontological predications ) . [SEP] B-Citation [SEP] SemRep uses [ [SEP] B-Application [SEP] version","While the UMLS Semantic Network has not been designed as an ontology in a strict sense , the extended version that SemRep uses [ 21 ] serves as an ontological resource:itdefinesadomainmodelconsistingofconcepttypes ( semantic types ) , relation types ( ontological predicates ) and the relationships that can hold between concept types ( ontological predications ) . [SEP] B-Application [SEP] version [SEP] B-Citation [SEP] SemRep uses ["
2,21,B-Application [SEP] UMLS Semantic Network,B-Citation [SEP] SemRep uses [,25,"While the UMLS Semantic Network has not been designed as an ontology in a strict sense , the extended version that SemRep uses [ 21 ] serves as an ontological resource:itdefinesadomainmodelconsistingofconcepttypes ( semantic types ) , relation types ( ontological predicates ) and the relationships that can hold between concept types ( ontological predications ) .","While the UMLS Semantic Network has not been designed as an ontology in a strict sense , the extended version that SemRep uses [ 21 ] serves as an ontological resource:itdefinesadomainmodelconsistingofconcepttypes ( semantic types ) , relation types ( ontological predicates ) and the relationships that can hold between concept types ( ontological predications ) . [SEP] B-Application [SEP] UMLS Semantic Network [SEP] B-Citation [SEP] SemRep uses [","While the UMLS Semantic Network has not been designed as an ontology in a strict sense , the extended version that SemRep uses [ 21 ] serves as an ontological resource:itdefinesadomainmodelconsistingofconcepttypes ( semantic types ) , relation types ( ontological predicates ) and the relationships that can hold between concept types ( ontological predications ) . [SEP] B-Citation [SEP] SemRep uses [ [SEP] B-Application [SEP] UMLS Semantic Network"
2,19,B-Application [SEP] UMLS Semantic Network,B-Application [SEP] version,25,"While the UMLS Semantic Network has not been designed as an ontology in a strict sense , the extended version that SemRep uses [ 21 ] serves as an ontological resource:itdefinesadomainmodelconsistingofconcepttypes ( semantic types ) , relation types ( ontological predicates ) and the relationships that can hold between concept types ( ontological predications ) .","While the UMLS Semantic Network has not been designed as an ontology in a strict sense , the extended version that SemRep uses [ 21 ] serves as an ontological resource:itdefinesadomainmodelconsistingofconcepttypes ( semantic types ) , relation types ( ontological predicates ) and the relationships that can hold between concept types ( ontological predications ) . [SEP] B-Application [SEP] UMLS Semantic Network [SEP] B-Application [SEP] version","While the UMLS Semantic Network has not been designed as an ontology in a strict sense , the extended version that SemRep uses [ 21 ] serves as an ontological resource:itdefinesadomainmodelconsistingofconcepttypes ( semantic types ) , relation types ( ontological predicates ) and the relationships that can hold between concept types ( ontological predications ) . [SEP] B-Application [SEP] version [SEP] B-Application [SEP] UMLS Semantic Network"
19,21,B-Application [SEP] version,B-Citation [SEP] SemRep uses [,25,"While the UMLS Semantic Network has not been designed as an ontology in a strict sense , the extended version that SemRep uses [ 21 ] serves as an ontological resource:itdefinesadomainmodelconsistingofconcepttypes ( semantic types ) , relation types ( ontological predicates ) and the relationships that can hold between concept types ( ontological predications ) .","While the UMLS Semantic Network has not been designed as an ontology in a strict sense , the extended version that SemRep uses [ 21 ] serves as an ontological resource:itdefinesadomainmodelconsistingofconcepttypes ( semantic types ) , relation types ( ontological predicates ) and the relationships that can hold between concept types ( ontological predications ) . [SEP] B-Application [SEP] version [SEP] B-Citation [SEP] SemRep uses [","While the UMLS Semantic Network has not been designed as an ontology in a strict sense , the extended version that SemRep uses [ 21 ] serves as an ontological resource:itdefinesadomainmodelconsistingofconcepttypes ( semantic types ) , relation types ( ontological predicates ) and the relationships that can hold between concept types ( ontological predications ) . [SEP] B-Citation [SEP] SemRep uses [ [SEP] B-Application [SEP] version"
19,2,B-Application [SEP] version,B-Application [SEP] UMLS Semantic Network,25,"While the UMLS Semantic Network has not been designed as an ontology in a strict sense , the extended version that SemRep uses [ 21 ] serves as an ontological resource:itdefinesadomainmodelconsistingofconcepttypes ( semantic types ) , relation types ( ontological predicates ) and the relationships that can hold between concept types ( ontological predications ) .","While the UMLS Semantic Network has not been designed as an ontology in a strict sense , the extended version that SemRep uses [ 21 ] serves as an ontological resource:itdefinesadomainmodelconsistingofconcepttypes ( semantic types ) , relation types ( ontological predicates ) and the relationships that can hold between concept types ( ontological predications ) . [SEP] B-Application [SEP] version [SEP] B-Application [SEP] UMLS Semantic Network","While the UMLS Semantic Network has not been designed as an ontology in a strict sense , the extended version that SemRep uses [ 21 ] serves as an ontological resource:itdefinesadomainmodelconsistingofconcepttypes ( semantic types ) , relation types ( ontological predicates ) and the relationships that can hold between concept types ( ontological predications ) . [SEP] B-Application [SEP] UMLS Semantic Network [SEP] B-Application [SEP] version"
12,15,B-Application [SEP] UMLS SPECIALIST Lexicon,B-Citation [SEP] [ 22 ],26,SemRep processing is supported by an underspecified syntactic analysis based on the UMLS SPECIALIST Lexicon [ 22 ] and the MedPost part - of - speech tagger [ 23 ] .,SemRep processing is supported by an underspecified syntactic analysis based on the UMLS SPECIALIST Lexicon [ 22 ] and the MedPost part - of - speech tagger [ 23 ] . [SEP] B-Application [SEP] UMLS SPECIALIST Lexicon [SEP] B-Citation [SEP] [ 22 ],SemRep processing is supported by an underspecified syntactic analysis based on the UMLS SPECIALIST Lexicon [ 22 ] and the MedPost part - of - speech tagger [ 23 ] . [SEP] B-Citation [SEP] [ 22 ] [SEP] B-Application [SEP] UMLS SPECIALIST Lexicon
12,20,B-Application [SEP] UMLS SPECIALIST Lexicon,B-PlugIn [SEP] MedPost part - of - speech tagger,26,SemRep processing is supported by an underspecified syntactic analysis based on the UMLS SPECIALIST Lexicon [ 22 ] and the MedPost part - of - speech tagger [ 23 ] .,SemRep processing is supported by an underspecified syntactic analysis based on the UMLS SPECIALIST Lexicon [ 22 ] and the MedPost part - of - speech tagger [ 23 ] . [SEP] B-Application [SEP] UMLS SPECIALIST Lexicon [SEP] B-PlugIn [SEP] MedPost part - of - speech tagger,SemRep processing is supported by an underspecified syntactic analysis based on the UMLS SPECIALIST Lexicon [ 22 ] and the MedPost part - of - speech tagger [ 23 ] . [SEP] B-PlugIn [SEP] MedPost part - of - speech tagger [SEP] B-Application [SEP] UMLS SPECIALIST Lexicon
12,27,B-Application [SEP] UMLS SPECIALIST Lexicon,B-Citation [SEP] [ 23 ],26,SemRep processing is supported by an underspecified syntactic analysis based on the UMLS SPECIALIST Lexicon [ 22 ] and the MedPost part - of - speech tagger [ 23 ] .,SemRep processing is supported by an underspecified syntactic analysis based on the UMLS SPECIALIST Lexicon [ 22 ] and the MedPost part - of - speech tagger [ 23 ] . [SEP] B-Application [SEP] UMLS SPECIALIST Lexicon [SEP] B-Citation [SEP] [ 23 ],SemRep processing is supported by an underspecified syntactic analysis based on the UMLS SPECIALIST Lexicon [ 22 ] and the MedPost part - of - speech tagger [ 23 ] . [SEP] B-Citation [SEP] [ 23 ] [SEP] B-Application [SEP] UMLS SPECIALIST Lexicon
15,12,B-Citation [SEP] [ 22 ],B-Application [SEP] UMLS SPECIALIST Lexicon,26,SemRep processing is supported by an underspecified syntactic analysis based on the UMLS SPECIALIST Lexicon [ 22 ] and the MedPost part - of - speech tagger [ 23 ] .,SemRep processing is supported by an underspecified syntactic analysis based on the UMLS SPECIALIST Lexicon [ 22 ] and the MedPost part - of - speech tagger [ 23 ] . [SEP] B-Citation [SEP] [ 22 ] [SEP] B-Application [SEP] UMLS SPECIALIST Lexicon,SemRep processing is supported by an underspecified syntactic analysis based on the UMLS SPECIALIST Lexicon [ 22 ] and the MedPost part - of - speech tagger [ 23 ] . [SEP] B-Application [SEP] UMLS SPECIALIST Lexicon [SEP] B-Citation [SEP] [ 22 ]
15,20,B-Citation [SEP] [ 22 ],B-PlugIn [SEP] MedPost part - of - speech tagger,26,SemRep processing is supported by an underspecified syntactic analysis based on the UMLS SPECIALIST Lexicon [ 22 ] and the MedPost part - of - speech tagger [ 23 ] .,SemRep processing is supported by an underspecified syntactic analysis based on the UMLS SPECIALIST Lexicon [ 22 ] and the MedPost part - of - speech tagger [ 23 ] . [SEP] B-Citation [SEP] [ 22 ] [SEP] B-PlugIn [SEP] MedPost part - of - speech tagger,SemRep processing is supported by an underspecified syntactic analysis based on the UMLS SPECIALIST Lexicon [ 22 ] and the MedPost part - of - speech tagger [ 23 ] . [SEP] B-PlugIn [SEP] MedPost part - of - speech tagger [SEP] B-Citation [SEP] [ 22 ]
15,27,B-Citation [SEP] [ 22 ],B-Citation [SEP] [ 23 ],26,SemRep processing is supported by an underspecified syntactic analysis based on the UMLS SPECIALIST Lexicon [ 22 ] and the MedPost part - of - speech tagger [ 23 ] .,SemRep processing is supported by an underspecified syntactic analysis based on the UMLS SPECIALIST Lexicon [ 22 ] and the MedPost part - of - speech tagger [ 23 ] . [SEP] B-Citation [SEP] [ 22 ] [SEP] B-Citation [SEP] [ 23 ],SemRep processing is supported by an underspecified syntactic analysis based on the UMLS SPECIALIST Lexicon [ 22 ] and the MedPost part - of - speech tagger [ 23 ] . [SEP] B-Citation [SEP] [ 23 ] [SEP] B-Citation [SEP] [ 22 ]
20,12,B-PlugIn [SEP] MedPost part - of - speech tagger,B-Application [SEP] UMLS SPECIALIST Lexicon,26,SemRep processing is supported by an underspecified syntactic analysis based on the UMLS SPECIALIST Lexicon [ 22 ] and the MedPost part - of - speech tagger [ 23 ] .,SemRep processing is supported by an underspecified syntactic analysis based on the UMLS SPECIALIST Lexicon [ 22 ] and the MedPost part - of - speech tagger [ 23 ] . [SEP] B-PlugIn [SEP] MedPost part - of - speech tagger [SEP] B-Application [SEP] UMLS SPECIALIST Lexicon,SemRep processing is supported by an underspecified syntactic analysis based on the UMLS SPECIALIST Lexicon [ 22 ] and the MedPost part - of - speech tagger [ 23 ] . [SEP] B-Application [SEP] UMLS SPECIALIST Lexicon [SEP] B-PlugIn [SEP] MedPost part - of - speech tagger
20,15,B-PlugIn [SEP] MedPost part - of - speech tagger,B-Citation [SEP] [ 22 ],26,SemRep processing is supported by an underspecified syntactic analysis based on the UMLS SPECIALIST Lexicon [ 22 ] and the MedPost part - of - speech tagger [ 23 ] .,SemRep processing is supported by an underspecified syntactic analysis based on the UMLS SPECIALIST Lexicon [ 22 ] and the MedPost part - of - speech tagger [ 23 ] . [SEP] B-PlugIn [SEP] MedPost part - of - speech tagger [SEP] B-Citation [SEP] [ 22 ],SemRep processing is supported by an underspecified syntactic analysis based on the UMLS SPECIALIST Lexicon [ 22 ] and the MedPost part - of - speech tagger [ 23 ] . [SEP] B-Citation [SEP] [ 22 ] [SEP] B-PlugIn [SEP] MedPost part - of - speech tagger
20,27,B-PlugIn [SEP] MedPost part - of - speech tagger,B-Citation [SEP] [ 23 ],26,SemRep processing is supported by an underspecified syntactic analysis based on the UMLS SPECIALIST Lexicon [ 22 ] and the MedPost part - of - speech tagger [ 23 ] .,SemRep processing is supported by an underspecified syntactic analysis based on the UMLS SPECIALIST Lexicon [ 22 ] and the MedPost part - of - speech tagger [ 23 ] . [SEP] B-PlugIn [SEP] MedPost part - of - speech tagger [SEP] B-Citation [SEP] [ 23 ],SemRep processing is supported by an underspecified syntactic analysis based on the UMLS SPECIALIST Lexicon [ 22 ] and the MedPost part - of - speech tagger [ 23 ] . [SEP] B-Citation [SEP] [ 23 ] [SEP] B-PlugIn [SEP] MedPost part - of - speech tagger
27,12,B-Citation [SEP] [ 23 ],B-Application [SEP] UMLS SPECIALIST Lexicon,26,SemRep processing is supported by an underspecified syntactic analysis based on the UMLS SPECIALIST Lexicon [ 22 ] and the MedPost part - of - speech tagger [ 23 ] .,SemRep processing is supported by an underspecified syntactic analysis based on the UMLS SPECIALIST Lexicon [ 22 ] and the MedPost part - of - speech tagger [ 23 ] . [SEP] B-Citation [SEP] [ 23 ] [SEP] B-Application [SEP] UMLS SPECIALIST Lexicon,SemRep processing is supported by an underspecified syntactic analysis based on the UMLS SPECIALIST Lexicon [ 22 ] and the MedPost part - of - speech tagger [ 23 ] . [SEP] B-Application [SEP] UMLS SPECIALIST Lexicon [SEP] B-Citation [SEP] [ 23 ]
27,15,B-Citation [SEP] [ 23 ],B-Citation [SEP] [ 22 ],26,SemRep processing is supported by an underspecified syntactic analysis based on the UMLS SPECIALIST Lexicon [ 22 ] and the MedPost part - of - speech tagger [ 23 ] .,SemRep processing is supported by an underspecified syntactic analysis based on the UMLS SPECIALIST Lexicon [ 22 ] and the MedPost part - of - speech tagger [ 23 ] . [SEP] B-Citation [SEP] [ 23 ] [SEP] B-Citation [SEP] [ 22 ],SemRep processing is supported by an underspecified syntactic analysis based on the UMLS SPECIALIST Lexicon [ 22 ] and the MedPost part - of - speech tagger [ 23 ] . [SEP] B-Citation [SEP] [ 22 ] [SEP] B-Citation [SEP] [ 23 ]
27,20,B-Citation [SEP] [ 23 ],B-PlugIn [SEP] MedPost part - of - speech tagger,26,SemRep processing is supported by an underspecified syntactic analysis based on the UMLS SPECIALIST Lexicon [ 22 ] and the MedPost part - of - speech tagger [ 23 ] .,SemRep processing is supported by an underspecified syntactic analysis based on the UMLS SPECIALIST Lexicon [ 22 ] and the MedPost part - of - speech tagger [ 23 ] . [SEP] B-Citation [SEP] [ 23 ] [SEP] B-PlugIn [SEP] MedPost part - of - speech tagger,SemRep processing is supported by an underspecified syntactic analysis based on the UMLS SPECIALIST Lexicon [ 22 ] and the MedPost part - of - speech tagger [ 23 ] . [SEP] B-PlugIn [SEP] MedPost part - of - speech tagger [SEP] B-Citation [SEP] [ 23 ]
0,1,B-Application [SEP] MetaMap,B-Citation [SEP] [ 24 ],27,MetaMap [ 24 ] is used to map simple noun phrases to UMLS Metathesaurus concepts .,MetaMap [ 24 ] is used to map simple noun phrases to UMLS Metathesaurus concepts . [SEP] B-Application [SEP] MetaMap [SEP] B-Citation [SEP] [ 24 ],MetaMap [ 24 ] is used to map simple noun phrases to UMLS Metathesaurus concepts . [SEP] B-Citation [SEP] [ 24 ] [SEP] B-Application [SEP] MetaMap
0,12,B-Application [SEP] MetaMap,B-Application [SEP] UMLS,27,MetaMap [ 24 ] is used to map simple noun phrases to UMLS Metathesaurus concepts .,MetaMap [ 24 ] is used to map simple noun phrases to UMLS Metathesaurus concepts . [SEP] B-Application [SEP] MetaMap [SEP] B-Application [SEP] UMLS,MetaMap [ 24 ] is used to map simple noun phrases to UMLS Metathesaurus concepts . [SEP] B-Application [SEP] UMLS [SEP] B-Application [SEP] MetaMap
1,0,B-Citation [SEP] [ 24 ],B-Application [SEP] MetaMap,27,MetaMap [ 24 ] is used to map simple noun phrases to UMLS Metathesaurus concepts .,MetaMap [ 24 ] is used to map simple noun phrases to UMLS Metathesaurus concepts . [SEP] B-Citation [SEP] [ 24 ] [SEP] B-Application [SEP] MetaMap,MetaMap [ 24 ] is used to map simple noun phrases to UMLS Metathesaurus concepts . [SEP] B-Application [SEP] MetaMap [SEP] B-Citation [SEP] [ 24 ]
1,12,B-Citation [SEP] [ 24 ],B-Application [SEP] UMLS,27,MetaMap [ 24 ] is used to map simple noun phrases to UMLS Metathesaurus concepts .,MetaMap [ 24 ] is used to map simple noun phrases to UMLS Metathesaurus concepts . [SEP] B-Citation [SEP] [ 24 ] [SEP] B-Application [SEP] UMLS,MetaMap [ 24 ] is used to map simple noun phrases to UMLS Metathesaurus concepts . [SEP] B-Application [SEP] UMLS [SEP] B-Citation [SEP] [ 24 ]
12,0,B-Application [SEP] UMLS,B-Application [SEP] MetaMap,27,MetaMap [ 24 ] is used to map simple noun phrases to UMLS Metathesaurus concepts .,MetaMap [ 24 ] is used to map simple noun phrases to UMLS Metathesaurus concepts . [SEP] B-Application [SEP] UMLS [SEP] B-Application [SEP] MetaMap,MetaMap [ 24 ] is used to map simple noun phrases to UMLS Metathesaurus concepts . [SEP] B-Application [SEP] MetaMap [SEP] B-Application [SEP] UMLS
12,1,B-Application [SEP] UMLS,B-Citation [SEP] [ 24 ],27,MetaMap [ 24 ] is used to map simple noun phrases to UMLS Metathesaurus concepts .,MetaMap [ 24 ] is used to map simple noun phrases to UMLS Metathesaurus concepts . [SEP] B-Application [SEP] UMLS [SEP] B-Citation [SEP] [ 24 ],MetaMap [ 24 ] is used to map simple noun phrases to UMLS Metathesaurus concepts . [SEP] B-Citation [SEP] [ 24 ] [SEP] B-Application [SEP] UMLS
32,24,B-Application [SEP] addition,B-Application [SEP] identified,28,"Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap .","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Application [SEP] addition [SEP] B-Application [SEP] identified","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Application [SEP] identified [SEP] B-Application [SEP] addition"
32,25,B-Application [SEP] addition,B-Citation [SEP] using ABGene [,28,"Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap .","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Application [SEP] addition [SEP] B-Citation [SEP] using ABGene [","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Citation [SEP] using ABGene [ [SEP] B-Application [SEP] addition"
32,2,B-Application [SEP] addition,B-Citation [SEP] [ 25 ],28,"Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap .","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Application [SEP] addition [SEP] B-Citation [SEP] [ 25 ]","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Application [SEP] addition"
32,0,B-Application [SEP] addition,B-Application [SEP] Entrez Gene,28,"Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap .","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Application [SEP] addition [SEP] B-Application [SEP] Entrez Gene","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Application [SEP] Entrez Gene [SEP] B-Application [SEP] addition"
32,11,B-Application [SEP] addition,B-Application [SEP] the UMLS,28,"Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap .","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Application [SEP] addition [SEP] B-Application [SEP] the UMLS","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Application [SEP] the UMLS [SEP] B-Application [SEP] addition"
24,32,B-Application [SEP] identified,B-Application [SEP] addition,28,"Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap .","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Application [SEP] identified [SEP] B-Application [SEP] addition","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Application [SEP] addition [SEP] B-Application [SEP] identified"
24,25,B-Application [SEP] identified,B-Citation [SEP] using ABGene [,28,"Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap .","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Application [SEP] identified [SEP] B-Citation [SEP] using ABGene [","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Citation [SEP] using ABGene [ [SEP] B-Application [SEP] identified"
24,2,B-Application [SEP] identified,B-Citation [SEP] [ 25 ],28,"Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap .","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Application [SEP] identified [SEP] B-Citation [SEP] [ 25 ]","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Application [SEP] identified"
24,0,B-Application [SEP] identified,B-Application [SEP] Entrez Gene,28,"Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap .","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Application [SEP] identified [SEP] B-Application [SEP] Entrez Gene","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Application [SEP] Entrez Gene [SEP] B-Application [SEP] identified"
24,11,B-Application [SEP] identified,B-Application [SEP] the UMLS,28,"Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap .","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Application [SEP] identified [SEP] B-Application [SEP] the UMLS","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Application [SEP] the UMLS [SEP] B-Application [SEP] identified"
25,32,B-Citation [SEP] using ABGene [,B-Application [SEP] addition,28,"Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap .","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Citation [SEP] using ABGene [ [SEP] B-Application [SEP] addition","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Application [SEP] addition [SEP] B-Citation [SEP] using ABGene ["
25,24,B-Citation [SEP] using ABGene [,B-Application [SEP] identified,28,"Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap .","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Citation [SEP] using ABGene [ [SEP] B-Application [SEP] identified","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Application [SEP] identified [SEP] B-Citation [SEP] using ABGene ["
25,2,B-Citation [SEP] using ABGene [,B-Citation [SEP] [ 25 ],28,"Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap .","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Citation [SEP] using ABGene [ [SEP] B-Citation [SEP] [ 25 ]","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Citation [SEP] using ABGene ["
25,0,B-Citation [SEP] using ABGene [,B-Application [SEP] Entrez Gene,28,"Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap .","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Citation [SEP] using ABGene [ [SEP] B-Application [SEP] Entrez Gene","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Application [SEP] Entrez Gene [SEP] B-Citation [SEP] using ABGene ["
25,11,B-Citation [SEP] using ABGene [,B-Application [SEP] the UMLS,28,"Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap .","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Citation [SEP] using ABGene [ [SEP] B-Application [SEP] the UMLS","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Application [SEP] the UMLS [SEP] B-Citation [SEP] using ABGene ["
2,32,B-Citation [SEP] [ 25 ],B-Application [SEP] addition,28,"Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap .","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Application [SEP] addition","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Application [SEP] addition [SEP] B-Citation [SEP] [ 25 ]"
2,24,B-Citation [SEP] [ 25 ],B-Application [SEP] identified,28,"Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap .","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Application [SEP] identified","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Application [SEP] identified [SEP] B-Citation [SEP] [ 25 ]"
2,25,B-Citation [SEP] [ 25 ],B-Citation [SEP] using ABGene [,28,"Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap .","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Citation [SEP] using ABGene [","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Citation [SEP] using ABGene [ [SEP] B-Citation [SEP] [ 25 ]"
2,0,B-Citation [SEP] [ 25 ],B-Application [SEP] Entrez Gene,28,"Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap .","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Application [SEP] Entrez Gene","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Application [SEP] Entrez Gene [SEP] B-Citation [SEP] [ 25 ]"
2,11,B-Citation [SEP] [ 25 ],B-Application [SEP] the UMLS,28,"Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap .","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Application [SEP] the UMLS","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Application [SEP] the UMLS [SEP] B-Citation [SEP] [ 25 ]"
0,32,B-Application [SEP] Entrez Gene,B-Application [SEP] addition,28,"Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap .","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Application [SEP] Entrez Gene [SEP] B-Application [SEP] addition","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Application [SEP] addition [SEP] B-Application [SEP] Entrez Gene"
0,24,B-Application [SEP] Entrez Gene,B-Application [SEP] identified,28,"Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap .","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Application [SEP] Entrez Gene [SEP] B-Application [SEP] identified","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Application [SEP] identified [SEP] B-Application [SEP] Entrez Gene"
0,25,B-Application [SEP] Entrez Gene,B-Citation [SEP] using ABGene [,28,"Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap .","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Application [SEP] Entrez Gene [SEP] B-Citation [SEP] using ABGene [","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Citation [SEP] using ABGene [ [SEP] B-Application [SEP] Entrez Gene"
0,2,B-Application [SEP] Entrez Gene,B-Citation [SEP] [ 25 ],28,"Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap .","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Application [SEP] Entrez Gene [SEP] B-Citation [SEP] [ 25 ]","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Application [SEP] Entrez Gene"
0,11,B-Application [SEP] Entrez Gene,B-Application [SEP] the UMLS,28,"Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap .","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Application [SEP] Entrez Gene [SEP] B-Application [SEP] the UMLS","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Application [SEP] the UMLS [SEP] B-Application [SEP] Entrez Gene"
11,32,B-Application [SEP] the UMLS,B-Application [SEP] addition,28,"Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap .","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Application [SEP] the UMLS [SEP] B-Application [SEP] addition","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Application [SEP] addition [SEP] B-Application [SEP] the UMLS"
11,24,B-Application [SEP] the UMLS,B-Application [SEP] identified,28,"Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap .","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Application [SEP] the UMLS [SEP] B-Application [SEP] identified","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Application [SEP] identified [SEP] B-Application [SEP] the UMLS"
11,25,B-Application [SEP] the UMLS,B-Citation [SEP] using ABGene [,28,"Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap .","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Application [SEP] the UMLS [SEP] B-Citation [SEP] using ABGene [","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Citation [SEP] using ABGene [ [SEP] B-Application [SEP] the UMLS"
11,2,B-Application [SEP] the UMLS,B-Citation [SEP] [ 25 ],28,"Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap .","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Application [SEP] the UMLS [SEP] B-Citation [SEP] [ 25 ]","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Application [SEP] the UMLS"
11,0,B-Application [SEP] the UMLS,B-Application [SEP] Entrez Gene,28,"Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap .","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Application [SEP] the UMLS [SEP] B-Application [SEP] Entrez Gene","Entrez Gene [ 25 ] serves as a supplementary source to the UMLS Metathesaurus with respect to gene / protein terms , which are identified using ABGene [ 26 ] , in addition to MetaMap . [SEP] B-Application [SEP] Entrez Gene [SEP] B-Application [SEP] the UMLS"
26,27,B-Application [SEP] MetaMap,B-Citation [SEP] [ 24 ],29,"To lighten the burden of finding an appropriate UMLS Metathesaurus concept corresponding to a textual mention , UMLS Metathesaurus concepts were extracted from these sentences using MetaMap [ 24 ] and were provided to the annotators ( an average of 9 . 86 concepts per sentence ) .","To lighten the burden of finding an appropriate UMLS Metathesaurus concept corresponding to a textual mention , UMLS Metathesaurus concepts were extracted from these sentences using MetaMap [ 24 ] and were provided to the annotators ( an average of 9 . 86 concepts per sentence ) . [SEP] B-Application [SEP] MetaMap [SEP] B-Citation [SEP] [ 24 ]","To lighten the burden of finding an appropriate UMLS Metathesaurus concept corresponding to a textual mention , UMLS Metathesaurus concepts were extracted from these sentences using MetaMap [ 24 ] and were provided to the annotators ( an average of 9 . 86 concepts per sentence ) . [SEP] B-Citation [SEP] [ 24 ] [SEP] B-Application [SEP] MetaMap"
27,26,B-Citation [SEP] [ 24 ],B-Application [SEP] MetaMap,29,"To lighten the burden of finding an appropriate UMLS Metathesaurus concept corresponding to a textual mention , UMLS Metathesaurus concepts were extracted from these sentences using MetaMap [ 24 ] and were provided to the annotators ( an average of 9 . 86 concepts per sentence ) .","To lighten the burden of finding an appropriate UMLS Metathesaurus concept corresponding to a textual mention , UMLS Metathesaurus concepts were extracted from these sentences using MetaMap [ 24 ] and were provided to the annotators ( an average of 9 . 86 concepts per sentence ) . [SEP] B-Citation [SEP] [ 24 ] [SEP] B-Application [SEP] MetaMap","To lighten the burden of finding an appropriate UMLS Metathesaurus concept corresponding to a textual mention , UMLS Metathesaurus concepts were extracted from these sentences using MetaMap [ 24 ] and were provided to the annotators ( an average of 9 . 86 concepts per sentence ) . [SEP] B-Application [SEP] MetaMap [SEP] B-Citation [SEP] [ 24 ]"
28,32,B-Application [SEP] using the UMLS,B-Abbreviation [SEP] Services,30,"When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources .","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Application [SEP] using the UMLS [SEP] B-Abbreviation [SEP] Services","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Abbreviation [SEP] Services [SEP] B-Application [SEP] using the UMLS"
28,33,B-Application [SEP] using the UMLS,B-Citation [SEP] ( UTS [,30,"When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources .","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Application [SEP] using the UMLS [SEP] B-Citation [SEP] ( UTS [","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Citation [SEP] ( UTS [ [SEP] B-Application [SEP] using the UMLS"
28,38,B-Application [SEP] using the UMLS,B-Application [SEP] ) or,30,"When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources .","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Application [SEP] using the UMLS [SEP] B-Application [SEP] ) or","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Application [SEP] ) or [SEP] B-Application [SEP] using the UMLS"
28,40,B-Application [SEP] using the UMLS,B-Citation [SEP] Entrez Gene [,30,"When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources .","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Application [SEP] using the UMLS [SEP] B-Citation [SEP] Entrez Gene [","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Citation [SEP] Entrez Gene [ [SEP] B-Application [SEP] using the UMLS"
28,48,B-Application [SEP] using the UMLS,B-Application [SEP] mind,30,"When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources .","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Application [SEP] using the UMLS [SEP] B-Application [SEP] mind","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Application [SEP] mind [SEP] B-Application [SEP] using the UMLS"
32,28,B-Abbreviation [SEP] Services,B-Application [SEP] using the UMLS,30,"When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources .","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Abbreviation [SEP] Services [SEP] B-Application [SEP] using the UMLS","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Application [SEP] using the UMLS [SEP] B-Abbreviation [SEP] Services"
32,33,B-Abbreviation [SEP] Services,B-Citation [SEP] ( UTS [,30,"When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources .","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Abbreviation [SEP] Services [SEP] B-Citation [SEP] ( UTS [","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Citation [SEP] ( UTS [ [SEP] B-Abbreviation [SEP] Services"
32,38,B-Abbreviation [SEP] Services,B-Application [SEP] ) or,30,"When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources .","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Abbreviation [SEP] Services [SEP] B-Application [SEP] ) or","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Application [SEP] ) or [SEP] B-Abbreviation [SEP] Services"
32,40,B-Abbreviation [SEP] Services,B-Citation [SEP] Entrez Gene [,30,"When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources .","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Abbreviation [SEP] Services [SEP] B-Citation [SEP] Entrez Gene [","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Citation [SEP] Entrez Gene [ [SEP] B-Abbreviation [SEP] Services"
32,48,B-Abbreviation [SEP] Services,B-Application [SEP] mind,30,"When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources .","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Abbreviation [SEP] Services [SEP] B-Application [SEP] mind","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Application [SEP] mind [SEP] B-Abbreviation [SEP] Services"
33,28,B-Citation [SEP] ( UTS [,B-Application [SEP] using the UMLS,30,"When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources .","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Citation [SEP] ( UTS [ [SEP] B-Application [SEP] using the UMLS","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Application [SEP] using the UMLS [SEP] B-Citation [SEP] ( UTS ["
33,32,B-Citation [SEP] ( UTS [,B-Abbreviation [SEP] Services,30,"When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources .","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Citation [SEP] ( UTS [ [SEP] B-Abbreviation [SEP] Services","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Abbreviation [SEP] Services [SEP] B-Citation [SEP] ( UTS ["
33,38,B-Citation [SEP] ( UTS [,B-Application [SEP] ) or,30,"When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources .","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Citation [SEP] ( UTS [ [SEP] B-Application [SEP] ) or","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Application [SEP] ) or [SEP] B-Citation [SEP] ( UTS ["
33,40,B-Citation [SEP] ( UTS [,B-Citation [SEP] Entrez Gene [,30,"When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources .","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Citation [SEP] ( UTS [ [SEP] B-Citation [SEP] Entrez Gene [","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Citation [SEP] Entrez Gene [ [SEP] B-Citation [SEP] ( UTS ["
33,48,B-Citation [SEP] ( UTS [,B-Application [SEP] mind,30,"When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources .","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Citation [SEP] ( UTS [ [SEP] B-Application [SEP] mind","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Application [SEP] mind [SEP] B-Citation [SEP] ( UTS ["
38,28,B-Application [SEP] ) or,B-Application [SEP] using the UMLS,30,"When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources .","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Application [SEP] ) or [SEP] B-Application [SEP] using the UMLS","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Application [SEP] using the UMLS [SEP] B-Application [SEP] ) or"
38,32,B-Application [SEP] ) or,B-Abbreviation [SEP] Services,30,"When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources .","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Application [SEP] ) or [SEP] B-Abbreviation [SEP] Services","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Abbreviation [SEP] Services [SEP] B-Application [SEP] ) or"
38,33,B-Application [SEP] ) or,B-Citation [SEP] ( UTS [,30,"When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources .","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Application [SEP] ) or [SEP] B-Citation [SEP] ( UTS [","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Citation [SEP] ( UTS [ [SEP] B-Application [SEP] ) or"
38,40,B-Application [SEP] ) or,B-Citation [SEP] Entrez Gene [,30,"When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources .","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Application [SEP] ) or [SEP] B-Citation [SEP] Entrez Gene [","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Citation [SEP] Entrez Gene [ [SEP] B-Application [SEP] ) or"
38,48,B-Application [SEP] ) or,B-Application [SEP] mind,30,"When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources .","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Application [SEP] ) or [SEP] B-Application [SEP] mind","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Application [SEP] mind [SEP] B-Application [SEP] ) or"
40,28,B-Citation [SEP] Entrez Gene [,B-Application [SEP] using the UMLS,30,"When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources .","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Citation [SEP] Entrez Gene [ [SEP] B-Application [SEP] using the UMLS","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Application [SEP] using the UMLS [SEP] B-Citation [SEP] Entrez Gene ["
40,32,B-Citation [SEP] Entrez Gene [,B-Abbreviation [SEP] Services,30,"When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources .","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Citation [SEP] Entrez Gene [ [SEP] B-Abbreviation [SEP] Services","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Abbreviation [SEP] Services [SEP] B-Citation [SEP] Entrez Gene ["
40,33,B-Citation [SEP] Entrez Gene [,B-Citation [SEP] ( UTS [,30,"When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources .","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Citation [SEP] Entrez Gene [ [SEP] B-Citation [SEP] ( UTS [","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Citation [SEP] ( UTS [ [SEP] B-Citation [SEP] Entrez Gene ["
40,38,B-Citation [SEP] Entrez Gene [,B-Application [SEP] ) or,30,"When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources .","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Citation [SEP] Entrez Gene [ [SEP] B-Application [SEP] ) or","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Application [SEP] ) or [SEP] B-Citation [SEP] Entrez Gene ["
40,48,B-Citation [SEP] Entrez Gene [,B-Application [SEP] mind,30,"When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources .","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Citation [SEP] Entrez Gene [ [SEP] B-Application [SEP] mind","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Application [SEP] mind [SEP] B-Citation [SEP] Entrez Gene ["
48,28,B-Application [SEP] mind,B-Application [SEP] using the UMLS,30,"When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources .","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Application [SEP] mind [SEP] B-Application [SEP] using the UMLS","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Application [SEP] using the UMLS [SEP] B-Application [SEP] mind"
48,32,B-Application [SEP] mind,B-Abbreviation [SEP] Services,30,"When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources .","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Application [SEP] mind [SEP] B-Abbreviation [SEP] Services","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Abbreviation [SEP] Services [SEP] B-Application [SEP] mind"
48,33,B-Application [SEP] mind,B-Citation [SEP] ( UTS [,30,"When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources .","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Application [SEP] mind [SEP] B-Citation [SEP] ( UTS [","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Citation [SEP] ( UTS [ [SEP] B-Application [SEP] mind"
48,38,B-Application [SEP] mind,B-Application [SEP] ) or,30,"When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources .","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Application [SEP] mind [SEP] B-Application [SEP] ) or","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Application [SEP] ) or [SEP] B-Application [SEP] mind"
48,40,B-Application [SEP] mind,B-Citation [SEP] Entrez Gene [,30,"When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources .","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Application [SEP] mind [SEP] B-Citation [SEP] Entrez Gene [","When in doubt , the annotator should try to find a concept that better matches the text ( a UMLS Metathesaurus concept or an Entrez Gene term ) using the UMLS Terminology Services ( UTS [ 35 ] ) or Entrez Gene [ 36 ] , keeping in mind that SemRep currently uses the 2006AA version of the UMLS knowledge sources . [SEP] B-Citation [SEP] Entrez Gene [ [SEP] B-Application [SEP] mind"
18,13,"B-Citation [SEP] [ 21 , 38 ]",B-PlugIn [SEP] SemRep,31,"In fact , we have extended the UMLS Semantic Network to create the SemRep ontology in prior work [ 21 , 38 ] specifically to redress this gap .","In fact , we have extended the UMLS Semantic Network to create the SemRep ontology in prior work [ 21 , 38 ] specifically to redress this gap . [SEP] B-Citation [SEP] [ 21 , 38 ] [SEP] B-PlugIn [SEP] SemRep","In fact , we have extended the UMLS Semantic Network to create the SemRep ontology in prior work [ 21 , 38 ] specifically to redress this gap . [SEP] B-PlugIn [SEP] SemRep [SEP] B-Citation [SEP] [ 21 , 38 ]"
18,7,"B-Citation [SEP] [ 21 , 38 ]",B-Application [SEP] UMLS,31,"In fact , we have extended the UMLS Semantic Network to create the SemRep ontology in prior work [ 21 , 38 ] specifically to redress this gap .","In fact , we have extended the UMLS Semantic Network to create the SemRep ontology in prior work [ 21 , 38 ] specifically to redress this gap . [SEP] B-Citation [SEP] [ 21 , 38 ] [SEP] B-Application [SEP] UMLS","In fact , we have extended the UMLS Semantic Network to create the SemRep ontology in prior work [ 21 , 38 ] specifically to redress this gap . [SEP] B-Application [SEP] UMLS [SEP] B-Citation [SEP] [ 21 , 38 ]"
18,8,"B-Citation [SEP] [ 21 , 38 ]",B-PlugIn [SEP] Semantic Network,31,"In fact , we have extended the UMLS Semantic Network to create the SemRep ontology in prior work [ 21 , 38 ] specifically to redress this gap .","In fact , we have extended the UMLS Semantic Network to create the SemRep ontology in prior work [ 21 , 38 ] specifically to redress this gap . [SEP] B-Citation [SEP] [ 21 , 38 ] [SEP] B-PlugIn [SEP] Semantic Network","In fact , we have extended the UMLS Semantic Network to create the SemRep ontology in prior work [ 21 , 38 ] specifically to redress this gap . [SEP] B-PlugIn [SEP] Semantic Network [SEP] B-Citation [SEP] [ 21 , 38 ]"
13,18,B-PlugIn [SEP] SemRep,"B-Citation [SEP] [ 21 , 38 ]",31,"In fact , we have extended the UMLS Semantic Network to create the SemRep ontology in prior work [ 21 , 38 ] specifically to redress this gap .","In fact , we have extended the UMLS Semantic Network to create the SemRep ontology in prior work [ 21 , 38 ] specifically to redress this gap . [SEP] B-PlugIn [SEP] SemRep [SEP] B-Citation [SEP] [ 21 , 38 ]","In fact , we have extended the UMLS Semantic Network to create the SemRep ontology in prior work [ 21 , 38 ] specifically to redress this gap . [SEP] B-Citation [SEP] [ 21 , 38 ] [SEP] B-PlugIn [SEP] SemRep"
13,7,B-PlugIn [SEP] SemRep,B-Application [SEP] UMLS,31,"In fact , we have extended the UMLS Semantic Network to create the SemRep ontology in prior work [ 21 , 38 ] specifically to redress this gap .","In fact , we have extended the UMLS Semantic Network to create the SemRep ontology in prior work [ 21 , 38 ] specifically to redress this gap . [SEP] B-PlugIn [SEP] SemRep [SEP] B-Application [SEP] UMLS","In fact , we have extended the UMLS Semantic Network to create the SemRep ontology in prior work [ 21 , 38 ] specifically to redress this gap . [SEP] B-Application [SEP] UMLS [SEP] B-PlugIn [SEP] SemRep"
13,8,B-PlugIn [SEP] SemRep,B-PlugIn [SEP] Semantic Network,31,"In fact , we have extended the UMLS Semantic Network to create the SemRep ontology in prior work [ 21 , 38 ] specifically to redress this gap .","In fact , we have extended the UMLS Semantic Network to create the SemRep ontology in prior work [ 21 , 38 ] specifically to redress this gap . [SEP] B-PlugIn [SEP] SemRep [SEP] B-PlugIn [SEP] Semantic Network","In fact , we have extended the UMLS Semantic Network to create the SemRep ontology in prior work [ 21 , 38 ] specifically to redress this gap . [SEP] B-PlugIn [SEP] Semantic Network [SEP] B-PlugIn [SEP] SemRep"
7,18,B-Application [SEP] UMLS,"B-Citation [SEP] [ 21 , 38 ]",31,"In fact , we have extended the UMLS Semantic Network to create the SemRep ontology in prior work [ 21 , 38 ] specifically to redress this gap .","In fact , we have extended the UMLS Semantic Network to create the SemRep ontology in prior work [ 21 , 38 ] specifically to redress this gap . [SEP] B-Application [SEP] UMLS [SEP] B-Citation [SEP] [ 21 , 38 ]","In fact , we have extended the UMLS Semantic Network to create the SemRep ontology in prior work [ 21 , 38 ] specifically to redress this gap . [SEP] B-Citation [SEP] [ 21 , 38 ] [SEP] B-Application [SEP] UMLS"
7,13,B-Application [SEP] UMLS,B-PlugIn [SEP] SemRep,31,"In fact , we have extended the UMLS Semantic Network to create the SemRep ontology in prior work [ 21 , 38 ] specifically to redress this gap .","In fact , we have extended the UMLS Semantic Network to create the SemRep ontology in prior work [ 21 , 38 ] specifically to redress this gap . [SEP] B-Application [SEP] UMLS [SEP] B-PlugIn [SEP] SemRep","In fact , we have extended the UMLS Semantic Network to create the SemRep ontology in prior work [ 21 , 38 ] specifically to redress this gap . [SEP] B-PlugIn [SEP] SemRep [SEP] B-Application [SEP] UMLS"
7,8,B-Application [SEP] UMLS,B-PlugIn [SEP] Semantic Network,31,"In fact , we have extended the UMLS Semantic Network to create the SemRep ontology in prior work [ 21 , 38 ] specifically to redress this gap .","In fact , we have extended the UMLS Semantic Network to create the SemRep ontology in prior work [ 21 , 38 ] specifically to redress this gap . [SEP] B-Application [SEP] UMLS [SEP] B-PlugIn [SEP] Semantic Network","In fact , we have extended the UMLS Semantic Network to create the SemRep ontology in prior work [ 21 , 38 ] specifically to redress this gap . [SEP] B-PlugIn [SEP] Semantic Network [SEP] B-Application [SEP] UMLS"
8,18,B-PlugIn [SEP] Semantic Network,"B-Citation [SEP] [ 21 , 38 ]",31,"In fact , we have extended the UMLS Semantic Network to create the SemRep ontology in prior work [ 21 , 38 ] specifically to redress this gap .","In fact , we have extended the UMLS Semantic Network to create the SemRep ontology in prior work [ 21 , 38 ] specifically to redress this gap . [SEP] B-PlugIn [SEP] Semantic Network [SEP] B-Citation [SEP] [ 21 , 38 ]","In fact , we have extended the UMLS Semantic Network to create the SemRep ontology in prior work [ 21 , 38 ] specifically to redress this gap . [SEP] B-Citation [SEP] [ 21 , 38 ] [SEP] B-PlugIn [SEP] Semantic Network"
8,13,B-PlugIn [SEP] Semantic Network,B-PlugIn [SEP] SemRep,31,"In fact , we have extended the UMLS Semantic Network to create the SemRep ontology in prior work [ 21 , 38 ] specifically to redress this gap .","In fact , we have extended the UMLS Semantic Network to create the SemRep ontology in prior work [ 21 , 38 ] specifically to redress this gap . [SEP] B-PlugIn [SEP] Semantic Network [SEP] B-PlugIn [SEP] SemRep","In fact , we have extended the UMLS Semantic Network to create the SemRep ontology in prior work [ 21 , 38 ] specifically to redress this gap . [SEP] B-PlugIn [SEP] SemRep [SEP] B-PlugIn [SEP] Semantic Network"
8,7,B-PlugIn [SEP] Semantic Network,B-Application [SEP] UMLS,31,"In fact , we have extended the UMLS Semantic Network to create the SemRep ontology in prior work [ 21 , 38 ] specifically to redress this gap .","In fact , we have extended the UMLS Semantic Network to create the SemRep ontology in prior work [ 21 , 38 ] specifically to redress this gap . [SEP] B-PlugIn [SEP] Semantic Network [SEP] B-Application [SEP] UMLS","In fact , we have extended the UMLS Semantic Network to create the SemRep ontology in prior work [ 21 , 38 ] specifically to redress this gap . [SEP] B-Application [SEP] UMLS [SEP] B-PlugIn [SEP] Semantic Network"
28,30,B-Application [SEP] QIIME,B-AlternativeName [SEP] Quantitative Insights Into Microbial Ecology,32,"There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] .","There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] . [SEP] B-Application [SEP] QIIME [SEP] B-AlternativeName [SEP] Quantitative Insights Into Microbial Ecology","There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] . [SEP] B-AlternativeName [SEP] Quantitative Insights Into Microbial Ecology [SEP] B-Application [SEP] QIIME"
28,36,B-Application [SEP] QIIME,B-Citation [SEP] [ 4 ],32,"There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] .","There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] . [SEP] B-Application [SEP] QIIME [SEP] B-Citation [SEP] [ 4 ]","There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] . [SEP] B-Citation [SEP] [ 4 ] [SEP] B-Application [SEP] QIIME"
28,40,B-Application [SEP] QIIME,B-Application [SEP] mothur,32,"There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] .","There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] . [SEP] B-Application [SEP] QIIME [SEP] B-Application [SEP] mothur","There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] . [SEP] B-Application [SEP] mothur [SEP] B-Application [SEP] QIIME"
28,41,B-Application [SEP] QIIME,B-Citation [SEP] [ 5 ],32,"There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] .","There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] . [SEP] B-Application [SEP] QIIME [SEP] B-Citation [SEP] [ 5 ]","There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] . [SEP] B-Citation [SEP] [ 5 ] [SEP] B-Application [SEP] QIIME"
30,28,B-AlternativeName [SEP] Quantitative Insights Into Microbial Ecology,B-Application [SEP] QIIME,32,"There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] .","There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] . [SEP] B-AlternativeName [SEP] Quantitative Insights Into Microbial Ecology [SEP] B-Application [SEP] QIIME","There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] . [SEP] B-Application [SEP] QIIME [SEP] B-AlternativeName [SEP] Quantitative Insights Into Microbial Ecology"
30,36,B-AlternativeName [SEP] Quantitative Insights Into Microbial Ecology,B-Citation [SEP] [ 4 ],32,"There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] .","There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] . [SEP] B-AlternativeName [SEP] Quantitative Insights Into Microbial Ecology [SEP] B-Citation [SEP] [ 4 ]","There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] . [SEP] B-Citation [SEP] [ 4 ] [SEP] B-AlternativeName [SEP] Quantitative Insights Into Microbial Ecology"
30,40,B-AlternativeName [SEP] Quantitative Insights Into Microbial Ecology,B-Application [SEP] mothur,32,"There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] .","There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] . [SEP] B-AlternativeName [SEP] Quantitative Insights Into Microbial Ecology [SEP] B-Application [SEP] mothur","There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] . [SEP] B-Application [SEP] mothur [SEP] B-AlternativeName [SEP] Quantitative Insights Into Microbial Ecology"
30,41,B-AlternativeName [SEP] Quantitative Insights Into Microbial Ecology,B-Citation [SEP] [ 5 ],32,"There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] .","There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] . [SEP] B-AlternativeName [SEP] Quantitative Insights Into Microbial Ecology [SEP] B-Citation [SEP] [ 5 ]","There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] . [SEP] B-Citation [SEP] [ 5 ] [SEP] B-AlternativeName [SEP] Quantitative Insights Into Microbial Ecology"
36,28,B-Citation [SEP] [ 4 ],B-Application [SEP] QIIME,32,"There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] .","There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] . [SEP] B-Citation [SEP] [ 4 ] [SEP] B-Application [SEP] QIIME","There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] . [SEP] B-Application [SEP] QIIME [SEP] B-Citation [SEP] [ 4 ]"
36,30,B-Citation [SEP] [ 4 ],B-AlternativeName [SEP] Quantitative Insights Into Microbial Ecology,32,"There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] .","There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] . [SEP] B-Citation [SEP] [ 4 ] [SEP] B-AlternativeName [SEP] Quantitative Insights Into Microbial Ecology","There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] . [SEP] B-AlternativeName [SEP] Quantitative Insights Into Microbial Ecology [SEP] B-Citation [SEP] [ 4 ]"
36,40,B-Citation [SEP] [ 4 ],B-Application [SEP] mothur,32,"There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] .","There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] . [SEP] B-Citation [SEP] [ 4 ] [SEP] B-Application [SEP] mothur","There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] . [SEP] B-Application [SEP] mothur [SEP] B-Citation [SEP] [ 4 ]"
36,41,B-Citation [SEP] [ 4 ],B-Citation [SEP] [ 5 ],32,"There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] .","There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] . [SEP] B-Citation [SEP] [ 4 ] [SEP] B-Citation [SEP] [ 5 ]","There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] . [SEP] B-Citation [SEP] [ 5 ] [SEP] B-Citation [SEP] [ 4 ]"
40,28,B-Application [SEP] mothur,B-Application [SEP] QIIME,32,"There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] .","There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] . [SEP] B-Application [SEP] mothur [SEP] B-Application [SEP] QIIME","There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] . [SEP] B-Application [SEP] QIIME [SEP] B-Application [SEP] mothur"
40,30,B-Application [SEP] mothur,B-AlternativeName [SEP] Quantitative Insights Into Microbial Ecology,32,"There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] .","There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] . [SEP] B-Application [SEP] mothur [SEP] B-AlternativeName [SEP] Quantitative Insights Into Microbial Ecology","There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] . [SEP] B-AlternativeName [SEP] Quantitative Insights Into Microbial Ecology [SEP] B-Application [SEP] mothur"
40,36,B-Application [SEP] mothur,B-Citation [SEP] [ 4 ],32,"There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] .","There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] . [SEP] B-Application [SEP] mothur [SEP] B-Citation [SEP] [ 4 ]","There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] . [SEP] B-Citation [SEP] [ 4 ] [SEP] B-Application [SEP] mothur"
40,41,B-Application [SEP] mothur,B-Citation [SEP] [ 5 ],32,"There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] .","There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] . [SEP] B-Application [SEP] mothur [SEP] B-Citation [SEP] [ 5 ]","There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] . [SEP] B-Citation [SEP] [ 5 ] [SEP] B-Application [SEP] mothur"
41,28,B-Citation [SEP] [ 5 ],B-Application [SEP] QIIME,32,"There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] .","There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] . [SEP] B-Citation [SEP] [ 5 ] [SEP] B-Application [SEP] QIIME","There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] . [SEP] B-Application [SEP] QIIME [SEP] B-Citation [SEP] [ 5 ]"
41,30,B-Citation [SEP] [ 5 ],B-AlternativeName [SEP] Quantitative Insights Into Microbial Ecology,32,"There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] .","There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] . [SEP] B-Citation [SEP] [ 5 ] [SEP] B-AlternativeName [SEP] Quantitative Insights Into Microbial Ecology","There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] . [SEP] B-AlternativeName [SEP] Quantitative Insights Into Microbial Ecology [SEP] B-Citation [SEP] [ 5 ]"
41,36,B-Citation [SEP] [ 5 ],B-Citation [SEP] [ 4 ],32,"There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] .","There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] . [SEP] B-Citation [SEP] [ 5 ] [SEP] B-Citation [SEP] [ 4 ]","There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] . [SEP] B-Citation [SEP] [ 4 ] [SEP] B-Citation [SEP] [ 5 ]"
41,40,B-Citation [SEP] [ 5 ],B-Application [SEP] mothur,32,"There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] .","There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] . [SEP] B-Citation [SEP] [ 5 ] [SEP] B-Application [SEP] mothur","There are multiple mature , open source tools for 16S rRNA gene analyses , that are well maintained and widely used within the scientific community , such as QIIME ( Quantitative Insights Into Microbial Ecology ) [ 4 ] and mothur [ 5 ] . [SEP] B-Application [SEP] mothur [SEP] B-Citation [SEP] [ 5 ]"
7,15,B-Developer [SEP] Genboree Microbiome Toolset,B-Application [SEP] Genboree Workbench,33,We have integrated those tools within the Genboree Microbiome Toolset and deployed them through the Genboree Workbench [ 6 ] using the Software - as - a - Service model .,We have integrated those tools within the Genboree Microbiome Toolset and deployed them through the Genboree Workbench [ 6 ] using the Software - as - a - Service model . [SEP] B-Developer [SEP] Genboree Microbiome Toolset [SEP] B-Application [SEP] Genboree Workbench,We have integrated those tools within the Genboree Microbiome Toolset and deployed them through the Genboree Workbench [ 6 ] using the Software - as - a - Service model . [SEP] B-Application [SEP] Genboree Workbench [SEP] B-Developer [SEP] Genboree Microbiome Toolset
7,17,B-Developer [SEP] Genboree Microbiome Toolset,B-Citation [SEP] [ 6 ],33,We have integrated those tools within the Genboree Microbiome Toolset and deployed them through the Genboree Workbench [ 6 ] using the Software - as - a - Service model .,We have integrated those tools within the Genboree Microbiome Toolset and deployed them through the Genboree Workbench [ 6 ] using the Software - as - a - Service model . [SEP] B-Developer [SEP] Genboree Microbiome Toolset [SEP] B-Citation [SEP] [ 6 ],We have integrated those tools within the Genboree Microbiome Toolset and deployed them through the Genboree Workbench [ 6 ] using the Software - as - a - Service model . [SEP] B-Citation [SEP] [ 6 ] [SEP] B-Developer [SEP] Genboree Microbiome Toolset
15,7,B-Application [SEP] Genboree Workbench,B-Developer [SEP] Genboree Microbiome Toolset,33,We have integrated those tools within the Genboree Microbiome Toolset and deployed them through the Genboree Workbench [ 6 ] using the Software - as - a - Service model .,We have integrated those tools within the Genboree Microbiome Toolset and deployed them through the Genboree Workbench [ 6 ] using the Software - as - a - Service model . [SEP] B-Application [SEP] Genboree Workbench [SEP] B-Developer [SEP] Genboree Microbiome Toolset,We have integrated those tools within the Genboree Microbiome Toolset and deployed them through the Genboree Workbench [ 6 ] using the Software - as - a - Service model . [SEP] B-Developer [SEP] Genboree Microbiome Toolset [SEP] B-Application [SEP] Genboree Workbench
15,17,B-Application [SEP] Genboree Workbench,B-Citation [SEP] [ 6 ],33,We have integrated those tools within the Genboree Microbiome Toolset and deployed them through the Genboree Workbench [ 6 ] using the Software - as - a - Service model .,We have integrated those tools within the Genboree Microbiome Toolset and deployed them through the Genboree Workbench [ 6 ] using the Software - as - a - Service model . [SEP] B-Application [SEP] Genboree Workbench [SEP] B-Citation [SEP] [ 6 ],We have integrated those tools within the Genboree Microbiome Toolset and deployed them through the Genboree Workbench [ 6 ] using the Software - as - a - Service model . [SEP] B-Citation [SEP] [ 6 ] [SEP] B-Application [SEP] Genboree Workbench
17,7,B-Citation [SEP] [ 6 ],B-Developer [SEP] Genboree Microbiome Toolset,33,We have integrated those tools within the Genboree Microbiome Toolset and deployed them through the Genboree Workbench [ 6 ] using the Software - as - a - Service model .,We have integrated those tools within the Genboree Microbiome Toolset and deployed them through the Genboree Workbench [ 6 ] using the Software - as - a - Service model . [SEP] B-Citation [SEP] [ 6 ] [SEP] B-Developer [SEP] Genboree Microbiome Toolset,We have integrated those tools within the Genboree Microbiome Toolset and deployed them through the Genboree Workbench [ 6 ] using the Software - as - a - Service model . [SEP] B-Developer [SEP] Genboree Microbiome Toolset [SEP] B-Citation [SEP] [ 6 ]
17,15,B-Citation [SEP] [ 6 ],B-Application [SEP] Genboree Workbench,33,We have integrated those tools within the Genboree Microbiome Toolset and deployed them through the Genboree Workbench [ 6 ] using the Software - as - a - Service model .,We have integrated those tools within the Genboree Microbiome Toolset and deployed them through the Genboree Workbench [ 6 ] using the Software - as - a - Service model . [SEP] B-Citation [SEP] [ 6 ] [SEP] B-Application [SEP] Genboree Workbench,We have integrated those tools within the Genboree Microbiome Toolset and deployed them through the Genboree Workbench [ 6 ] using the Software - as - a - Service model . [SEP] B-Application [SEP] Genboree Workbench [SEP] B-Citation [SEP] [ 6 ]
3,5,B-Application [SEP] RDP Classifier,B-Version [SEP] 2 . 1,34,The output of RDP Classifier 2 . 1 ( and newer ) assigns each sequence to the most specific taxon level ( from the Domain to the Genus levels ) .,The output of RDP Classifier 2 . 1 ( and newer ) assigns each sequence to the most specific taxon level ( from the Domain to the Genus levels ) . [SEP] B-Application [SEP] RDP Classifier [SEP] B-Version [SEP] 2 . 1,The output of RDP Classifier 2 . 1 ( and newer ) assigns each sequence to the most specific taxon level ( from the Domain to the Genus levels ) . [SEP] B-Version [SEP] 2 . 1 [SEP] B-Application [SEP] RDP Classifier
5,3,B-Version [SEP] 2 . 1,B-Application [SEP] RDP Classifier,34,The output of RDP Classifier 2 . 1 ( and newer ) assigns each sequence to the most specific taxon level ( from the Domain to the Genus levels ) .,The output of RDP Classifier 2 . 1 ( and newer ) assigns each sequence to the most specific taxon level ( from the Domain to the Genus levels ) . [SEP] B-Version [SEP] 2 . 1 [SEP] B-Application [SEP] RDP Classifier,The output of RDP Classifier 2 . 1 ( and newer ) assigns each sequence to the most specific taxon level ( from the Domain to the Genus levels ) . [SEP] B-Application [SEP] RDP Classifier [SEP] B-Version [SEP] 2 . 1
33,34,B-Application [SEP] uclust,B-Citation [SEP] [ 12 ],35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] uclust [SEP] B-Citation [SEP] [ 12 ]","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Application [SEP] uclust"
33,28,B-Application [SEP] uclust,B-Citation [SEP] [ 5 ],35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] uclust [SEP] B-Citation [SEP] [ 5 ]","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 5 ] [SEP] B-Application [SEP] uclust"
33,27,B-Application [SEP] uclust,B-Application [SEP] mothur,35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] uclust [SEP] B-Application [SEP] mothur","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] mothur [SEP] B-Application [SEP] uclust"
33,23,B-Application [SEP] uclust,B-Citation [SEP] [ 11 ],35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] uclust [SEP] B-Citation [SEP] [ 11 ]","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Application [SEP] uclust"
33,20,B-Application [SEP] uclust,B-Application [SEP] cd - hit,35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] uclust [SEP] B-Application [SEP] cd - hit","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] cd - hit [SEP] B-Application [SEP] uclust"
33,3,B-Application [SEP] uclust,B-Citation [SEP] [ 4 ],35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] uclust [SEP] B-Citation [SEP] [ 4 ]","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 4 ] [SEP] B-Application [SEP] uclust"
33,1,B-Application [SEP] uclust,B-Application [SEP] QIIME,35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] uclust [SEP] B-Application [SEP] QIIME","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] QIIME [SEP] B-Application [SEP] uclust"
34,33,B-Citation [SEP] [ 12 ],B-Application [SEP] uclust,35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Application [SEP] uclust","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] uclust [SEP] B-Citation [SEP] [ 12 ]"
34,28,B-Citation [SEP] [ 12 ],B-Citation [SEP] [ 5 ],35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Citation [SEP] [ 5 ]","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 5 ] [SEP] B-Citation [SEP] [ 12 ]"
34,27,B-Citation [SEP] [ 12 ],B-Application [SEP] mothur,35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Application [SEP] mothur","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] mothur [SEP] B-Citation [SEP] [ 12 ]"
34,23,B-Citation [SEP] [ 12 ],B-Citation [SEP] [ 11 ],35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Citation [SEP] [ 11 ]","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Citation [SEP] [ 12 ]"
34,20,B-Citation [SEP] [ 12 ],B-Application [SEP] cd - hit,35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Application [SEP] cd - hit","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] cd - hit [SEP] B-Citation [SEP] [ 12 ]"
34,3,B-Citation [SEP] [ 12 ],B-Citation [SEP] [ 4 ],35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Citation [SEP] [ 4 ]","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 4 ] [SEP] B-Citation [SEP] [ 12 ]"
34,1,B-Citation [SEP] [ 12 ],B-Application [SEP] QIIME,35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Application [SEP] QIIME","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] QIIME [SEP] B-Citation [SEP] [ 12 ]"
28,33,B-Citation [SEP] [ 5 ],B-Application [SEP] uclust,35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 5 ] [SEP] B-Application [SEP] uclust","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] uclust [SEP] B-Citation [SEP] [ 5 ]"
28,34,B-Citation [SEP] [ 5 ],B-Citation [SEP] [ 12 ],35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 5 ] [SEP] B-Citation [SEP] [ 12 ]","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Citation [SEP] [ 5 ]"
28,27,B-Citation [SEP] [ 5 ],B-Application [SEP] mothur,35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 5 ] [SEP] B-Application [SEP] mothur","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] mothur [SEP] B-Citation [SEP] [ 5 ]"
28,23,B-Citation [SEP] [ 5 ],B-Citation [SEP] [ 11 ],35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 5 ] [SEP] B-Citation [SEP] [ 11 ]","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Citation [SEP] [ 5 ]"
28,20,B-Citation [SEP] [ 5 ],B-Application [SEP] cd - hit,35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 5 ] [SEP] B-Application [SEP] cd - hit","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] cd - hit [SEP] B-Citation [SEP] [ 5 ]"
28,3,B-Citation [SEP] [ 5 ],B-Citation [SEP] [ 4 ],35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 5 ] [SEP] B-Citation [SEP] [ 4 ]","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 4 ] [SEP] B-Citation [SEP] [ 5 ]"
28,1,B-Citation [SEP] [ 5 ],B-Application [SEP] QIIME,35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 5 ] [SEP] B-Application [SEP] QIIME","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] QIIME [SEP] B-Citation [SEP] [ 5 ]"
27,33,B-Application [SEP] mothur,B-Application [SEP] uclust,35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] mothur [SEP] B-Application [SEP] uclust","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] uclust [SEP] B-Application [SEP] mothur"
27,34,B-Application [SEP] mothur,B-Citation [SEP] [ 12 ],35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] mothur [SEP] B-Citation [SEP] [ 12 ]","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Application [SEP] mothur"
27,28,B-Application [SEP] mothur,B-Citation [SEP] [ 5 ],35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] mothur [SEP] B-Citation [SEP] [ 5 ]","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 5 ] [SEP] B-Application [SEP] mothur"
27,23,B-Application [SEP] mothur,B-Citation [SEP] [ 11 ],35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] mothur [SEP] B-Citation [SEP] [ 11 ]","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Application [SEP] mothur"
27,20,B-Application [SEP] mothur,B-Application [SEP] cd - hit,35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] mothur [SEP] B-Application [SEP] cd - hit","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] cd - hit [SEP] B-Application [SEP] mothur"
27,3,B-Application [SEP] mothur,B-Citation [SEP] [ 4 ],35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] mothur [SEP] B-Citation [SEP] [ 4 ]","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 4 ] [SEP] B-Application [SEP] mothur"
27,1,B-Application [SEP] mothur,B-Application [SEP] QIIME,35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] mothur [SEP] B-Application [SEP] QIIME","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] QIIME [SEP] B-Application [SEP] mothur"
23,33,B-Citation [SEP] [ 11 ],B-Application [SEP] uclust,35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Application [SEP] uclust","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] uclust [SEP] B-Citation [SEP] [ 11 ]"
23,34,B-Citation [SEP] [ 11 ],B-Citation [SEP] [ 12 ],35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Citation [SEP] [ 12 ]","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Citation [SEP] [ 11 ]"
23,28,B-Citation [SEP] [ 11 ],B-Citation [SEP] [ 5 ],35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Citation [SEP] [ 5 ]","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 5 ] [SEP] B-Citation [SEP] [ 11 ]"
23,27,B-Citation [SEP] [ 11 ],B-Application [SEP] mothur,35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Application [SEP] mothur","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] mothur [SEP] B-Citation [SEP] [ 11 ]"
23,20,B-Citation [SEP] [ 11 ],B-Application [SEP] cd - hit,35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Application [SEP] cd - hit","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] cd - hit [SEP] B-Citation [SEP] [ 11 ]"
23,3,B-Citation [SEP] [ 11 ],B-Citation [SEP] [ 4 ],35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Citation [SEP] [ 4 ]","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 4 ] [SEP] B-Citation [SEP] [ 11 ]"
23,1,B-Citation [SEP] [ 11 ],B-Application [SEP] QIIME,35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Application [SEP] QIIME","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] QIIME [SEP] B-Citation [SEP] [ 11 ]"
20,33,B-Application [SEP] cd - hit,B-Application [SEP] uclust,35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] cd - hit [SEP] B-Application [SEP] uclust","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] uclust [SEP] B-Application [SEP] cd - hit"
20,34,B-Application [SEP] cd - hit,B-Citation [SEP] [ 12 ],35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] cd - hit [SEP] B-Citation [SEP] [ 12 ]","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Application [SEP] cd - hit"
20,28,B-Application [SEP] cd - hit,B-Citation [SEP] [ 5 ],35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] cd - hit [SEP] B-Citation [SEP] [ 5 ]","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 5 ] [SEP] B-Application [SEP] cd - hit"
20,27,B-Application [SEP] cd - hit,B-Application [SEP] mothur,35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] cd - hit [SEP] B-Application [SEP] mothur","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] mothur [SEP] B-Application [SEP] cd - hit"
20,23,B-Application [SEP] cd - hit,B-Citation [SEP] [ 11 ],35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] cd - hit [SEP] B-Citation [SEP] [ 11 ]","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Application [SEP] cd - hit"
20,3,B-Application [SEP] cd - hit,B-Citation [SEP] [ 4 ],35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] cd - hit [SEP] B-Citation [SEP] [ 4 ]","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 4 ] [SEP] B-Application [SEP] cd - hit"
20,1,B-Application [SEP] cd - hit,B-Application [SEP] QIIME,35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] cd - hit [SEP] B-Application [SEP] QIIME","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] QIIME [SEP] B-Application [SEP] cd - hit"
3,33,B-Citation [SEP] [ 4 ],B-Application [SEP] uclust,35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 4 ] [SEP] B-Application [SEP] uclust","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] uclust [SEP] B-Citation [SEP] [ 4 ]"
3,34,B-Citation [SEP] [ 4 ],B-Citation [SEP] [ 12 ],35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 4 ] [SEP] B-Citation [SEP] [ 12 ]","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Citation [SEP] [ 4 ]"
3,28,B-Citation [SEP] [ 4 ],B-Citation [SEP] [ 5 ],35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 4 ] [SEP] B-Citation [SEP] [ 5 ]","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 5 ] [SEP] B-Citation [SEP] [ 4 ]"
3,27,B-Citation [SEP] [ 4 ],B-Application [SEP] mothur,35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 4 ] [SEP] B-Application [SEP] mothur","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] mothur [SEP] B-Citation [SEP] [ 4 ]"
3,23,B-Citation [SEP] [ 4 ],B-Citation [SEP] [ 11 ],35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 4 ] [SEP] B-Citation [SEP] [ 11 ]","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Citation [SEP] [ 4 ]"
3,20,B-Citation [SEP] [ 4 ],B-Application [SEP] cd - hit,35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 4 ] [SEP] B-Application [SEP] cd - hit","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] cd - hit [SEP] B-Citation [SEP] [ 4 ]"
3,1,B-Citation [SEP] [ 4 ],B-Application [SEP] QIIME,35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 4 ] [SEP] B-Application [SEP] QIIME","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] QIIME [SEP] B-Citation [SEP] [ 4 ]"
1,33,B-Application [SEP] QIIME,B-Application [SEP] uclust,35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] QIIME [SEP] B-Application [SEP] uclust","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] uclust [SEP] B-Application [SEP] QIIME"
1,34,B-Application [SEP] QIIME,B-Citation [SEP] [ 12 ],35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] QIIME [SEP] B-Citation [SEP] [ 12 ]","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Application [SEP] QIIME"
1,28,B-Application [SEP] QIIME,B-Citation [SEP] [ 5 ],35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] QIIME [SEP] B-Citation [SEP] [ 5 ]","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 5 ] [SEP] B-Application [SEP] QIIME"
1,27,B-Application [SEP] QIIME,B-Application [SEP] mothur,35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] QIIME [SEP] B-Application [SEP] mothur","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] mothur [SEP] B-Application [SEP] QIIME"
1,23,B-Application [SEP] QIIME,B-Citation [SEP] [ 11 ],35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] QIIME [SEP] B-Citation [SEP] [ 11 ]","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Application [SEP] QIIME"
1,20,B-Application [SEP] QIIME,B-Application [SEP] cd - hit,35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] QIIME [SEP] B-Application [SEP] cd - hit","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] cd - hit [SEP] B-Application [SEP] QIIME"
1,3,B-Application [SEP] QIIME,B-Citation [SEP] [ 4 ],35,"The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] .","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Application [SEP] QIIME [SEP] B-Citation [SEP] [ 4 ]","The QIIME package [ 4 ] performs multi - step chained OTU picking using multiple third party tools , including cd - hit [ 11 ] , mothur [ 5 ] , and uclust [ 12 ] . [SEP] B-Citation [SEP] [ 4 ] [SEP] B-Application [SEP] QIIME"
24,26,B-Application [SEP] Chimera Slayer,B-Citation [SEP] [ 13 ],36,"Chimeric sequences , which can be falsely detected as novel organisms , resulting in the artificial inflation of diversity are detected and removed using Chimera Slayer [ 13 ] .","Chimeric sequences , which can be falsely detected as novel organisms , resulting in the artificial inflation of diversity are detected and removed using Chimera Slayer [ 13 ] . [SEP] B-Application [SEP] Chimera Slayer [SEP] B-Citation [SEP] [ 13 ]","Chimeric sequences , which can be falsely detected as novel organisms , resulting in the artificial inflation of diversity are detected and removed using Chimera Slayer [ 13 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Application [SEP] Chimera Slayer"
26,24,B-Citation [SEP] [ 13 ],B-Application [SEP] Chimera Slayer,36,"Chimeric sequences , which can be falsely detected as novel organisms , resulting in the artificial inflation of diversity are detected and removed using Chimera Slayer [ 13 ] .","Chimeric sequences , which can be falsely detected as novel organisms , resulting in the artificial inflation of diversity are detected and removed using Chimera Slayer [ 13 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Application [SEP] Chimera Slayer","Chimeric sequences , which can be falsely detected as novel organisms , resulting in the artificial inflation of diversity are detected and removed using Chimera Slayer [ 13 ] . [SEP] B-Application [SEP] Chimera Slayer [SEP] B-Citation [SEP] [ 13 ]"
9,14,B-Application [SEP] the interactive Tree Of,B-Abbreviation [SEP] (,37,"Phylogenetic differences may be visualized using tools such as the interactive Tree Of Life ( iTOL ) , which supports upload , display , and manipulation of phylogenetic trees [ 15 ] .","Phylogenetic differences may be visualized using tools such as the interactive Tree Of Life ( iTOL ) , which supports upload , display , and manipulation of phylogenetic trees [ 15 ] . [SEP] B-Application [SEP] the interactive Tree Of [SEP] B-Abbreviation [SEP] (","Phylogenetic differences may be visualized using tools such as the interactive Tree Of Life ( iTOL ) , which supports upload , display , and manipulation of phylogenetic trees [ 15 ] . [SEP] B-Abbreviation [SEP] ( [SEP] B-Application [SEP] the interactive Tree Of"
9,28,B-Application [SEP] the interactive Tree Of,B-Citation [SEP] trees [ 15,37,"Phylogenetic differences may be visualized using tools such as the interactive Tree Of Life ( iTOL ) , which supports upload , display , and manipulation of phylogenetic trees [ 15 ] .","Phylogenetic differences may be visualized using tools such as the interactive Tree Of Life ( iTOL ) , which supports upload , display , and manipulation of phylogenetic trees [ 15 ] . [SEP] B-Application [SEP] the interactive Tree Of [SEP] B-Citation [SEP] trees [ 15","Phylogenetic differences may be visualized using tools such as the interactive Tree Of Life ( iTOL ) , which supports upload , display , and manipulation of phylogenetic trees [ 15 ] . [SEP] B-Citation [SEP] trees [ 15 [SEP] B-Application [SEP] the interactive Tree Of"
14,9,B-Abbreviation [SEP] (,B-Application [SEP] the interactive Tree Of,37,"Phylogenetic differences may be visualized using tools such as the interactive Tree Of Life ( iTOL ) , which supports upload , display , and manipulation of phylogenetic trees [ 15 ] .","Phylogenetic differences may be visualized using tools such as the interactive Tree Of Life ( iTOL ) , which supports upload , display , and manipulation of phylogenetic trees [ 15 ] . [SEP] B-Abbreviation [SEP] ( [SEP] B-Application [SEP] the interactive Tree Of","Phylogenetic differences may be visualized using tools such as the interactive Tree Of Life ( iTOL ) , which supports upload , display , and manipulation of phylogenetic trees [ 15 ] . [SEP] B-Application [SEP] the interactive Tree Of [SEP] B-Abbreviation [SEP] ("
14,28,B-Abbreviation [SEP] (,B-Citation [SEP] trees [ 15,37,"Phylogenetic differences may be visualized using tools such as the interactive Tree Of Life ( iTOL ) , which supports upload , display , and manipulation of phylogenetic trees [ 15 ] .","Phylogenetic differences may be visualized using tools such as the interactive Tree Of Life ( iTOL ) , which supports upload , display , and manipulation of phylogenetic trees [ 15 ] . [SEP] B-Abbreviation [SEP] ( [SEP] B-Citation [SEP] trees [ 15","Phylogenetic differences may be visualized using tools such as the interactive Tree Of Life ( iTOL ) , which supports upload , display , and manipulation of phylogenetic trees [ 15 ] . [SEP] B-Citation [SEP] trees [ 15 [SEP] B-Abbreviation [SEP] ("
28,9,B-Citation [SEP] trees [ 15,B-Application [SEP] the interactive Tree Of,37,"Phylogenetic differences may be visualized using tools such as the interactive Tree Of Life ( iTOL ) , which supports upload , display , and manipulation of phylogenetic trees [ 15 ] .","Phylogenetic differences may be visualized using tools such as the interactive Tree Of Life ( iTOL ) , which supports upload , display , and manipulation of phylogenetic trees [ 15 ] . [SEP] B-Citation [SEP] trees [ 15 [SEP] B-Application [SEP] the interactive Tree Of","Phylogenetic differences may be visualized using tools such as the interactive Tree Of Life ( iTOL ) , which supports upload , display , and manipulation of phylogenetic trees [ 15 ] . [SEP] B-Application [SEP] the interactive Tree Of [SEP] B-Citation [SEP] trees [ 15"
28,14,B-Citation [SEP] trees [ 15,B-Abbreviation [SEP] (,37,"Phylogenetic differences may be visualized using tools such as the interactive Tree Of Life ( iTOL ) , which supports upload , display , and manipulation of phylogenetic trees [ 15 ] .","Phylogenetic differences may be visualized using tools such as the interactive Tree Of Life ( iTOL ) , which supports upload , display , and manipulation of phylogenetic trees [ 15 ] . [SEP] B-Citation [SEP] trees [ 15 [SEP] B-Abbreviation [SEP] (","Phylogenetic differences may be visualized using tools such as the interactive Tree Of Life ( iTOL ) , which supports upload , display , and manipulation of phylogenetic trees [ 15 ] . [SEP] B-Abbreviation [SEP] ( [SEP] B-Citation [SEP] trees [ 15"
4,5,B-Application [SEP] UniFrac,B-Citation [SEP] [ 14 ],38,"The phylogenetic - based UniFrac [ 14 ] algorithm enables the analysis of different microbiomes by providing both a quantitative measurement , using weighted UniFrac , and a qualitative measurement , using unweighted UniFrac .","The phylogenetic - based UniFrac [ 14 ] algorithm enables the analysis of different microbiomes by providing both a quantitative measurement , using weighted UniFrac , and a qualitative measurement , using unweighted UniFrac . [SEP] B-Application [SEP] UniFrac [SEP] B-Citation [SEP] [ 14 ]","The phylogenetic - based UniFrac [ 14 ] algorithm enables the analysis of different microbiomes by providing both a quantitative measurement , using weighted UniFrac , and a qualitative measurement , using unweighted UniFrac . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Application [SEP] UniFrac"
4,32,B-Application [SEP] UniFrac,B-Application [SEP] unweighted,38,"The phylogenetic - based UniFrac [ 14 ] algorithm enables the analysis of different microbiomes by providing both a quantitative measurement , using weighted UniFrac , and a qualitative measurement , using unweighted UniFrac .","The phylogenetic - based UniFrac [ 14 ] algorithm enables the analysis of different microbiomes by providing both a quantitative measurement , using weighted UniFrac , and a qualitative measurement , using unweighted UniFrac . [SEP] B-Application [SEP] UniFrac [SEP] B-Application [SEP] unweighted","The phylogenetic - based UniFrac [ 14 ] algorithm enables the analysis of different microbiomes by providing both a quantitative measurement , using weighted UniFrac , and a qualitative measurement , using unweighted UniFrac . [SEP] B-Application [SEP] unweighted [SEP] B-Application [SEP] UniFrac"
5,4,B-Citation [SEP] [ 14 ],B-Application [SEP] UniFrac,38,"The phylogenetic - based UniFrac [ 14 ] algorithm enables the analysis of different microbiomes by providing both a quantitative measurement , using weighted UniFrac , and a qualitative measurement , using unweighted UniFrac .","The phylogenetic - based UniFrac [ 14 ] algorithm enables the analysis of different microbiomes by providing both a quantitative measurement , using weighted UniFrac , and a qualitative measurement , using unweighted UniFrac . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Application [SEP] UniFrac","The phylogenetic - based UniFrac [ 14 ] algorithm enables the analysis of different microbiomes by providing both a quantitative measurement , using weighted UniFrac , and a qualitative measurement , using unweighted UniFrac . [SEP] B-Application [SEP] UniFrac [SEP] B-Citation [SEP] [ 14 ]"
5,24,B-Citation [SEP] [ 14 ],B-Application [SEP] UniFrac,38,"The phylogenetic - based UniFrac [ 14 ] algorithm enables the analysis of different microbiomes by providing both a quantitative measurement , using weighted UniFrac , and a qualitative measurement , using unweighted UniFrac .","The phylogenetic - based UniFrac [ 14 ] algorithm enables the analysis of different microbiomes by providing both a quantitative measurement , using weighted UniFrac , and a qualitative measurement , using unweighted UniFrac . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Application [SEP] UniFrac","The phylogenetic - based UniFrac [ 14 ] algorithm enables the analysis of different microbiomes by providing both a quantitative measurement , using weighted UniFrac , and a qualitative measurement , using unweighted UniFrac . [SEP] B-Application [SEP] UniFrac [SEP] B-Citation [SEP] [ 14 ]"
5,32,B-Citation [SEP] [ 14 ],B-Application [SEP] unweighted,38,"The phylogenetic - based UniFrac [ 14 ] algorithm enables the analysis of different microbiomes by providing both a quantitative measurement , using weighted UniFrac , and a qualitative measurement , using unweighted UniFrac .","The phylogenetic - based UniFrac [ 14 ] algorithm enables the analysis of different microbiomes by providing both a quantitative measurement , using weighted UniFrac , and a qualitative measurement , using unweighted UniFrac . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Application [SEP] unweighted","The phylogenetic - based UniFrac [ 14 ] algorithm enables the analysis of different microbiomes by providing both a quantitative measurement , using weighted UniFrac , and a qualitative measurement , using unweighted UniFrac . [SEP] B-Application [SEP] unweighted [SEP] B-Citation [SEP] [ 14 ]"
24,5,B-Application [SEP] UniFrac,B-Citation [SEP] [ 14 ],38,"The phylogenetic - based UniFrac [ 14 ] algorithm enables the analysis of different microbiomes by providing both a quantitative measurement , using weighted UniFrac , and a qualitative measurement , using unweighted UniFrac .","The phylogenetic - based UniFrac [ 14 ] algorithm enables the analysis of different microbiomes by providing both a quantitative measurement , using weighted UniFrac , and a qualitative measurement , using unweighted UniFrac . [SEP] B-Application [SEP] UniFrac [SEP] B-Citation [SEP] [ 14 ]","The phylogenetic - based UniFrac [ 14 ] algorithm enables the analysis of different microbiomes by providing both a quantitative measurement , using weighted UniFrac , and a qualitative measurement , using unweighted UniFrac . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Application [SEP] UniFrac"
24,32,B-Application [SEP] UniFrac,B-Application [SEP] unweighted,38,"The phylogenetic - based UniFrac [ 14 ] algorithm enables the analysis of different microbiomes by providing both a quantitative measurement , using weighted UniFrac , and a qualitative measurement , using unweighted UniFrac .","The phylogenetic - based UniFrac [ 14 ] algorithm enables the analysis of different microbiomes by providing both a quantitative measurement , using weighted UniFrac , and a qualitative measurement , using unweighted UniFrac . [SEP] B-Application [SEP] UniFrac [SEP] B-Application [SEP] unweighted","The phylogenetic - based UniFrac [ 14 ] algorithm enables the analysis of different microbiomes by providing both a quantitative measurement , using weighted UniFrac , and a qualitative measurement , using unweighted UniFrac . [SEP] B-Application [SEP] unweighted [SEP] B-Application [SEP] UniFrac"
32,4,B-Application [SEP] unweighted,B-Application [SEP] UniFrac,38,"The phylogenetic - based UniFrac [ 14 ] algorithm enables the analysis of different microbiomes by providing both a quantitative measurement , using weighted UniFrac , and a qualitative measurement , using unweighted UniFrac .","The phylogenetic - based UniFrac [ 14 ] algorithm enables the analysis of different microbiomes by providing both a quantitative measurement , using weighted UniFrac , and a qualitative measurement , using unweighted UniFrac . [SEP] B-Application [SEP] unweighted [SEP] B-Application [SEP] UniFrac","The phylogenetic - based UniFrac [ 14 ] algorithm enables the analysis of different microbiomes by providing both a quantitative measurement , using weighted UniFrac , and a qualitative measurement , using unweighted UniFrac . [SEP] B-Application [SEP] UniFrac [SEP] B-Application [SEP] unweighted"
32,5,B-Application [SEP] unweighted,B-Citation [SEP] [ 14 ],38,"The phylogenetic - based UniFrac [ 14 ] algorithm enables the analysis of different microbiomes by providing both a quantitative measurement , using weighted UniFrac , and a qualitative measurement , using unweighted UniFrac .","The phylogenetic - based UniFrac [ 14 ] algorithm enables the analysis of different microbiomes by providing both a quantitative measurement , using weighted UniFrac , and a qualitative measurement , using unweighted UniFrac . [SEP] B-Application [SEP] unweighted [SEP] B-Citation [SEP] [ 14 ]","The phylogenetic - based UniFrac [ 14 ] algorithm enables the analysis of different microbiomes by providing both a quantitative measurement , using weighted UniFrac , and a qualitative measurement , using unweighted UniFrac . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Application [SEP] unweighted"
32,24,B-Application [SEP] unweighted,B-Application [SEP] UniFrac,38,"The phylogenetic - based UniFrac [ 14 ] algorithm enables the analysis of different microbiomes by providing both a quantitative measurement , using weighted UniFrac , and a qualitative measurement , using unweighted UniFrac .","The phylogenetic - based UniFrac [ 14 ] algorithm enables the analysis of different microbiomes by providing both a quantitative measurement , using weighted UniFrac , and a qualitative measurement , using unweighted UniFrac . [SEP] B-Application [SEP] unweighted [SEP] B-Application [SEP] UniFrac","The phylogenetic - based UniFrac [ 14 ] algorithm enables the analysis of different microbiomes by providing both a quantitative measurement , using weighted UniFrac , and a qualitative measurement , using unweighted UniFrac . [SEP] B-Application [SEP] UniFrac [SEP] B-Application [SEP] unweighted"
15,14,B-Citation [SEP] [ 21 ],B-Application [SEP] Boruta,39,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection .,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection . [SEP] B-Citation [SEP] [ 21 ] [SEP] B-Application [SEP] Boruta,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection . [SEP] B-Application [SEP] Boruta [SEP] B-Citation [SEP] [ 21 ]
15,4,B-Citation [SEP] [ 21 ],B-ProgrammingEnvironment [SEP] R,39,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection .,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection . [SEP] B-Citation [SEP] [ 21 ] [SEP] B-ProgrammingEnvironment [SEP] R,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Citation [SEP] [ 21 ]
15,6,B-Citation [SEP] [ 21 ],B-PlugIn [SEP] randomForest,39,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection .,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection . [SEP] B-Citation [SEP] [ 21 ] [SEP] B-PlugIn [SEP] randomForest,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection . [SEP] B-PlugIn [SEP] randomForest [SEP] B-Citation [SEP] [ 21 ]
15,7,B-Citation [SEP] [ 21 ],B-Citation [SEP] [ 20 ],39,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection .,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection . [SEP] B-Citation [SEP] [ 21 ] [SEP] B-Citation [SEP] [ 20 ],The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection . [SEP] B-Citation [SEP] [ 20 ] [SEP] B-Citation [SEP] [ 21 ]
14,15,B-Application [SEP] Boruta,B-Citation [SEP] [ 21 ],39,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection .,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection . [SEP] B-Application [SEP] Boruta [SEP] B-Citation [SEP] [ 21 ],The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection . [SEP] B-Citation [SEP] [ 21 ] [SEP] B-Application [SEP] Boruta
14,4,B-Application [SEP] Boruta,B-ProgrammingEnvironment [SEP] R,39,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection .,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection . [SEP] B-Application [SEP] Boruta [SEP] B-ProgrammingEnvironment [SEP] R,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Application [SEP] Boruta
14,6,B-Application [SEP] Boruta,B-PlugIn [SEP] randomForest,39,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection .,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection . [SEP] B-Application [SEP] Boruta [SEP] B-PlugIn [SEP] randomForest,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection . [SEP] B-PlugIn [SEP] randomForest [SEP] B-Application [SEP] Boruta
14,7,B-Application [SEP] Boruta,B-Citation [SEP] [ 20 ],39,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection .,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection . [SEP] B-Application [SEP] Boruta [SEP] B-Citation [SEP] [ 20 ],The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection . [SEP] B-Citation [SEP] [ 20 ] [SEP] B-Application [SEP] Boruta
4,15,B-ProgrammingEnvironment [SEP] R,B-Citation [SEP] [ 21 ],39,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection .,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Citation [SEP] [ 21 ],The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection . [SEP] B-Citation [SEP] [ 21 ] [SEP] B-ProgrammingEnvironment [SEP] R
4,14,B-ProgrammingEnvironment [SEP] R,B-Application [SEP] Boruta,39,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection .,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Application [SEP] Boruta,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection . [SEP] B-Application [SEP] Boruta [SEP] B-ProgrammingEnvironment [SEP] R
4,6,B-ProgrammingEnvironment [SEP] R,B-PlugIn [SEP] randomForest,39,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection .,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-PlugIn [SEP] randomForest,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection . [SEP] B-PlugIn [SEP] randomForest [SEP] B-ProgrammingEnvironment [SEP] R
4,7,B-ProgrammingEnvironment [SEP] R,B-Citation [SEP] [ 20 ],39,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection .,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Citation [SEP] [ 20 ],The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection . [SEP] B-Citation [SEP] [ 20 ] [SEP] B-ProgrammingEnvironment [SEP] R
6,15,B-PlugIn [SEP] randomForest,B-Citation [SEP] [ 21 ],39,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection .,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection . [SEP] B-PlugIn [SEP] randomForest [SEP] B-Citation [SEP] [ 21 ],The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection . [SEP] B-Citation [SEP] [ 21 ] [SEP] B-PlugIn [SEP] randomForest
6,14,B-PlugIn [SEP] randomForest,B-Application [SEP] Boruta,39,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection .,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection . [SEP] B-PlugIn [SEP] randomForest [SEP] B-Application [SEP] Boruta,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection . [SEP] B-Application [SEP] Boruta [SEP] B-PlugIn [SEP] randomForest
6,4,B-PlugIn [SEP] randomForest,B-ProgrammingEnvironment [SEP] R,39,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection .,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection . [SEP] B-PlugIn [SEP] randomForest [SEP] B-ProgrammingEnvironment [SEP] R,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-PlugIn [SEP] randomForest
6,7,B-PlugIn [SEP] randomForest,B-Citation [SEP] [ 20 ],39,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection .,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection . [SEP] B-PlugIn [SEP] randomForest [SEP] B-Citation [SEP] [ 20 ],The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection . [SEP] B-Citation [SEP] [ 20 ] [SEP] B-PlugIn [SEP] randomForest
7,15,B-Citation [SEP] [ 20 ],B-Citation [SEP] [ 21 ],39,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection .,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection . [SEP] B-Citation [SEP] [ 20 ] [SEP] B-Citation [SEP] [ 21 ],The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection . [SEP] B-Citation [SEP] [ 21 ] [SEP] B-Citation [SEP] [ 20 ]
7,14,B-Citation [SEP] [ 20 ],B-Application [SEP] Boruta,39,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection .,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection . [SEP] B-Citation [SEP] [ 20 ] [SEP] B-Application [SEP] Boruta,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection . [SEP] B-Application [SEP] Boruta [SEP] B-Citation [SEP] [ 20 ]
7,4,B-Citation [SEP] [ 20 ],B-ProgrammingEnvironment [SEP] R,39,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection .,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection . [SEP] B-Citation [SEP] [ 20 ] [SEP] B-ProgrammingEnvironment [SEP] R,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Citation [SEP] [ 20 ]
7,6,B-Citation [SEP] [ 20 ],B-PlugIn [SEP] randomForest,39,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection .,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection . [SEP] B-Citation [SEP] [ 20 ] [SEP] B-PlugIn [SEP] randomForest,The pipeline utilizes the R package randomForest [ 20 ] for supervised learning and Boruta [ 21 ] for feature selection . [SEP] B-PlugIn [SEP] randomForest [SEP] B-Citation [SEP] [ 20 ]
1,10,B-Application [SEP] randomForest,B-Citation [SEP] 22 ],40,"Because randomForest does not inherently provide for feature selection [ 22 ] , we employed the R package Boruta , a feature selection algorithm built around the randomForest algorithm .","Because randomForest does not inherently provide for feature selection [ 22 ] , we employed the R package Boruta , a feature selection algorithm built around the randomForest algorithm . [SEP] B-Application [SEP] randomForest [SEP] B-Citation [SEP] 22 ]","Because randomForest does not inherently provide for feature selection [ 22 ] , we employed the R package Boruta , a feature selection algorithm built around the randomForest algorithm . [SEP] B-Citation [SEP] 22 ] [SEP] B-Application [SEP] randomForest"
1,16,B-Application [SEP] randomForest,B-ProgrammingEnvironment [SEP] R,40,"Because randomForest does not inherently provide for feature selection [ 22 ] , we employed the R package Boruta , a feature selection algorithm built around the randomForest algorithm .","Because randomForest does not inherently provide for feature selection [ 22 ] , we employed the R package Boruta , a feature selection algorithm built around the randomForest algorithm . [SEP] B-Application [SEP] randomForest [SEP] B-ProgrammingEnvironment [SEP] R","Because randomForest does not inherently provide for feature selection [ 22 ] , we employed the R package Boruta , a feature selection algorithm built around the randomForest algorithm . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Application [SEP] randomForest"
1,18,B-Application [SEP] randomForest,B-PlugIn [SEP] Boruta,40,"Because randomForest does not inherently provide for feature selection [ 22 ] , we employed the R package Boruta , a feature selection algorithm built around the randomForest algorithm .","Because randomForest does not inherently provide for feature selection [ 22 ] , we employed the R package Boruta , a feature selection algorithm built around the randomForest algorithm . [SEP] B-Application [SEP] randomForest [SEP] B-PlugIn [SEP] Boruta","Because randomForest does not inherently provide for feature selection [ 22 ] , we employed the R package Boruta , a feature selection algorithm built around the randomForest algorithm . [SEP] B-PlugIn [SEP] Boruta [SEP] B-Application [SEP] randomForest"
10,1,B-Citation [SEP] 22 ],B-Application [SEP] randomForest,40,"Because randomForest does not inherently provide for feature selection [ 22 ] , we employed the R package Boruta , a feature selection algorithm built around the randomForest algorithm .","Because randomForest does not inherently provide for feature selection [ 22 ] , we employed the R package Boruta , a feature selection algorithm built around the randomForest algorithm . [SEP] B-Citation [SEP] 22 ] [SEP] B-Application [SEP] randomForest","Because randomForest does not inherently provide for feature selection [ 22 ] , we employed the R package Boruta , a feature selection algorithm built around the randomForest algorithm . [SEP] B-Application [SEP] randomForest [SEP] B-Citation [SEP] 22 ]"
10,16,B-Citation [SEP] 22 ],B-ProgrammingEnvironment [SEP] R,40,"Because randomForest does not inherently provide for feature selection [ 22 ] , we employed the R package Boruta , a feature selection algorithm built around the randomForest algorithm .","Because randomForest does not inherently provide for feature selection [ 22 ] , we employed the R package Boruta , a feature selection algorithm built around the randomForest algorithm . [SEP] B-Citation [SEP] 22 ] [SEP] B-ProgrammingEnvironment [SEP] R","Because randomForest does not inherently provide for feature selection [ 22 ] , we employed the R package Boruta , a feature selection algorithm built around the randomForest algorithm . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Citation [SEP] 22 ]"
10,18,B-Citation [SEP] 22 ],B-PlugIn [SEP] Boruta,40,"Because randomForest does not inherently provide for feature selection [ 22 ] , we employed the R package Boruta , a feature selection algorithm built around the randomForest algorithm .","Because randomForest does not inherently provide for feature selection [ 22 ] , we employed the R package Boruta , a feature selection algorithm built around the randomForest algorithm . [SEP] B-Citation [SEP] 22 ] [SEP] B-PlugIn [SEP] Boruta","Because randomForest does not inherently provide for feature selection [ 22 ] , we employed the R package Boruta , a feature selection algorithm built around the randomForest algorithm . [SEP] B-PlugIn [SEP] Boruta [SEP] B-Citation [SEP] 22 ]"
16,1,B-ProgrammingEnvironment [SEP] R,B-Application [SEP] randomForest,40,"Because randomForest does not inherently provide for feature selection [ 22 ] , we employed the R package Boruta , a feature selection algorithm built around the randomForest algorithm .","Because randomForest does not inherently provide for feature selection [ 22 ] , we employed the R package Boruta , a feature selection algorithm built around the randomForest algorithm . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Application [SEP] randomForest","Because randomForest does not inherently provide for feature selection [ 22 ] , we employed the R package Boruta , a feature selection algorithm built around the randomForest algorithm . [SEP] B-Application [SEP] randomForest [SEP] B-ProgrammingEnvironment [SEP] R"
16,10,B-ProgrammingEnvironment [SEP] R,B-Citation [SEP] 22 ],40,"Because randomForest does not inherently provide for feature selection [ 22 ] , we employed the R package Boruta , a feature selection algorithm built around the randomForest algorithm .","Because randomForest does not inherently provide for feature selection [ 22 ] , we employed the R package Boruta , a feature selection algorithm built around the randomForest algorithm . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Citation [SEP] 22 ]","Because randomForest does not inherently provide for feature selection [ 22 ] , we employed the R package Boruta , a feature selection algorithm built around the randomForest algorithm . [SEP] B-Citation [SEP] 22 ] [SEP] B-ProgrammingEnvironment [SEP] R"
16,18,B-ProgrammingEnvironment [SEP] R,B-PlugIn [SEP] Boruta,40,"Because randomForest does not inherently provide for feature selection [ 22 ] , we employed the R package Boruta , a feature selection algorithm built around the randomForest algorithm .","Because randomForest does not inherently provide for feature selection [ 22 ] , we employed the R package Boruta , a feature selection algorithm built around the randomForest algorithm . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-PlugIn [SEP] Boruta","Because randomForest does not inherently provide for feature selection [ 22 ] , we employed the R package Boruta , a feature selection algorithm built around the randomForest algorithm . [SEP] B-PlugIn [SEP] Boruta [SEP] B-ProgrammingEnvironment [SEP] R"
18,1,B-PlugIn [SEP] Boruta,B-Application [SEP] randomForest,40,"Because randomForest does not inherently provide for feature selection [ 22 ] , we employed the R package Boruta , a feature selection algorithm built around the randomForest algorithm .","Because randomForest does not inherently provide for feature selection [ 22 ] , we employed the R package Boruta , a feature selection algorithm built around the randomForest algorithm . [SEP] B-PlugIn [SEP] Boruta [SEP] B-Application [SEP] randomForest","Because randomForest does not inherently provide for feature selection [ 22 ] , we employed the R package Boruta , a feature selection algorithm built around the randomForest algorithm . [SEP] B-Application [SEP] randomForest [SEP] B-PlugIn [SEP] Boruta"
18,10,B-PlugIn [SEP] Boruta,B-Citation [SEP] 22 ],40,"Because randomForest does not inherently provide for feature selection [ 22 ] , we employed the R package Boruta , a feature selection algorithm built around the randomForest algorithm .","Because randomForest does not inherently provide for feature selection [ 22 ] , we employed the R package Boruta , a feature selection algorithm built around the randomForest algorithm . [SEP] B-PlugIn [SEP] Boruta [SEP] B-Citation [SEP] 22 ]","Because randomForest does not inherently provide for feature selection [ 22 ] , we employed the R package Boruta , a feature selection algorithm built around the randomForest algorithm . [SEP] B-Citation [SEP] 22 ] [SEP] B-PlugIn [SEP] Boruta"
18,16,B-PlugIn [SEP] Boruta,B-ProgrammingEnvironment [SEP] R,40,"Because randomForest does not inherently provide for feature selection [ 22 ] , we employed the R package Boruta , a feature selection algorithm built around the randomForest algorithm .","Because randomForest does not inherently provide for feature selection [ 22 ] , we employed the R package Boruta , a feature selection algorithm built around the randomForest algorithm . [SEP] B-PlugIn [SEP] Boruta [SEP] B-ProgrammingEnvironment [SEP] R","Because randomForest does not inherently provide for feature selection [ 22 ] , we employed the R package Boruta , a feature selection algorithm built around the randomForest algorithm . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-PlugIn [SEP] Boruta"
24,29,B-Application [SEP] Interactive Tree of Life,B-Abbreviation [SEP] iTOL,41,"A visualization of the phylogenetic tree , along with the sample metadata input ( Fig [ 6 ] . ) was produced using the Interactive Tree of Life ( iTOL ) [ 15 ] API from input generated by the Microbiome Toolset .","A visualization of the phylogenetic tree , along with the sample metadata input ( Fig [ 6 ] . ) was produced using the Interactive Tree of Life ( iTOL ) [ 15 ] API from input generated by the Microbiome Toolset . [SEP] B-Application [SEP] Interactive Tree of Life [SEP] B-Abbreviation [SEP] iTOL","A visualization of the phylogenetic tree , along with the sample metadata input ( Fig [ 6 ] . ) was produced using the Interactive Tree of Life ( iTOL ) [ 15 ] API from input generated by the Microbiome Toolset . [SEP] B-Abbreviation [SEP] iTOL [SEP] B-Application [SEP] Interactive Tree of Life"
24,31,B-Application [SEP] Interactive Tree of Life,B-Citation [SEP] [ 15 ],41,"A visualization of the phylogenetic tree , along with the sample metadata input ( Fig [ 6 ] . ) was produced using the Interactive Tree of Life ( iTOL ) [ 15 ] API from input generated by the Microbiome Toolset .","A visualization of the phylogenetic tree , along with the sample metadata input ( Fig [ 6 ] . ) was produced using the Interactive Tree of Life ( iTOL ) [ 15 ] API from input generated by the Microbiome Toolset . [SEP] B-Application [SEP] Interactive Tree of Life [SEP] B-Citation [SEP] [ 15 ]","A visualization of the phylogenetic tree , along with the sample metadata input ( Fig [ 6 ] . ) was produced using the Interactive Tree of Life ( iTOL ) [ 15 ] API from input generated by the Microbiome Toolset . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Application [SEP] Interactive Tree of Life"
24,40,B-Application [SEP] Interactive Tree of Life,B-Application [SEP] Microbiome Toolset,41,"A visualization of the phylogenetic tree , along with the sample metadata input ( Fig [ 6 ] . ) was produced using the Interactive Tree of Life ( iTOL ) [ 15 ] API from input generated by the Microbiome Toolset .","A visualization of the phylogenetic tree , along with the sample metadata input ( Fig [ 6 ] . ) was produced using the Interactive Tree of Life ( iTOL ) [ 15 ] API from input generated by the Microbiome Toolset . [SEP] B-Application [SEP] Interactive Tree of Life [SEP] B-Application [SEP] Microbiome Toolset","A visualization of the phylogenetic tree , along with the sample metadata input ( Fig [ 6 ] . ) was produced using the Interactive Tree of Life ( iTOL ) [ 15 ] API from input generated by the Microbiome Toolset . [SEP] B-Application [SEP] Microbiome Toolset [SEP] B-Application [SEP] Interactive Tree of Life"
29,24,B-Abbreviation [SEP] iTOL,B-Application [SEP] Interactive Tree of Life,41,"A visualization of the phylogenetic tree , along with the sample metadata input ( Fig [ 6 ] . ) was produced using the Interactive Tree of Life ( iTOL ) [ 15 ] API from input generated by the Microbiome Toolset .","A visualization of the phylogenetic tree , along with the sample metadata input ( Fig [ 6 ] . ) was produced using the Interactive Tree of Life ( iTOL ) [ 15 ] API from input generated by the Microbiome Toolset . [SEP] B-Abbreviation [SEP] iTOL [SEP] B-Application [SEP] Interactive Tree of Life","A visualization of the phylogenetic tree , along with the sample metadata input ( Fig [ 6 ] . ) was produced using the Interactive Tree of Life ( iTOL ) [ 15 ] API from input generated by the Microbiome Toolset . [SEP] B-Application [SEP] Interactive Tree of Life [SEP] B-Abbreviation [SEP] iTOL"
29,31,B-Abbreviation [SEP] iTOL,B-Citation [SEP] [ 15 ],41,"A visualization of the phylogenetic tree , along with the sample metadata input ( Fig [ 6 ] . ) was produced using the Interactive Tree of Life ( iTOL ) [ 15 ] API from input generated by the Microbiome Toolset .","A visualization of the phylogenetic tree , along with the sample metadata input ( Fig [ 6 ] . ) was produced using the Interactive Tree of Life ( iTOL ) [ 15 ] API from input generated by the Microbiome Toolset . [SEP] B-Abbreviation [SEP] iTOL [SEP] B-Citation [SEP] [ 15 ]","A visualization of the phylogenetic tree , along with the sample metadata input ( Fig [ 6 ] . ) was produced using the Interactive Tree of Life ( iTOL ) [ 15 ] API from input generated by the Microbiome Toolset . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Abbreviation [SEP] iTOL"
29,40,B-Abbreviation [SEP] iTOL,B-Application [SEP] Microbiome Toolset,41,"A visualization of the phylogenetic tree , along with the sample metadata input ( Fig [ 6 ] . ) was produced using the Interactive Tree of Life ( iTOL ) [ 15 ] API from input generated by the Microbiome Toolset .","A visualization of the phylogenetic tree , along with the sample metadata input ( Fig [ 6 ] . ) was produced using the Interactive Tree of Life ( iTOL ) [ 15 ] API from input generated by the Microbiome Toolset . [SEP] B-Abbreviation [SEP] iTOL [SEP] B-Application [SEP] Microbiome Toolset","A visualization of the phylogenetic tree , along with the sample metadata input ( Fig [ 6 ] . ) was produced using the Interactive Tree of Life ( iTOL ) [ 15 ] API from input generated by the Microbiome Toolset . [SEP] B-Application [SEP] Microbiome Toolset [SEP] B-Abbreviation [SEP] iTOL"
31,24,B-Citation [SEP] [ 15 ],B-Application [SEP] Interactive Tree of Life,41,"A visualization of the phylogenetic tree , along with the sample metadata input ( Fig [ 6 ] . ) was produced using the Interactive Tree of Life ( iTOL ) [ 15 ] API from input generated by the Microbiome Toolset .","A visualization of the phylogenetic tree , along with the sample metadata input ( Fig [ 6 ] . ) was produced using the Interactive Tree of Life ( iTOL ) [ 15 ] API from input generated by the Microbiome Toolset . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Application [SEP] Interactive Tree of Life","A visualization of the phylogenetic tree , along with the sample metadata input ( Fig [ 6 ] . ) was produced using the Interactive Tree of Life ( iTOL ) [ 15 ] API from input generated by the Microbiome Toolset . [SEP] B-Application [SEP] Interactive Tree of Life [SEP] B-Citation [SEP] [ 15 ]"
31,29,B-Citation [SEP] [ 15 ],B-Abbreviation [SEP] iTOL,41,"A visualization of the phylogenetic tree , along with the sample metadata input ( Fig [ 6 ] . ) was produced using the Interactive Tree of Life ( iTOL ) [ 15 ] API from input generated by the Microbiome Toolset .","A visualization of the phylogenetic tree , along with the sample metadata input ( Fig [ 6 ] . ) was produced using the Interactive Tree of Life ( iTOL ) [ 15 ] API from input generated by the Microbiome Toolset . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Abbreviation [SEP] iTOL","A visualization of the phylogenetic tree , along with the sample metadata input ( Fig [ 6 ] . ) was produced using the Interactive Tree of Life ( iTOL ) [ 15 ] API from input generated by the Microbiome Toolset . [SEP] B-Abbreviation [SEP] iTOL [SEP] B-Citation [SEP] [ 15 ]"
31,40,B-Citation [SEP] [ 15 ],B-Application [SEP] Microbiome Toolset,41,"A visualization of the phylogenetic tree , along with the sample metadata input ( Fig [ 6 ] . ) was produced using the Interactive Tree of Life ( iTOL ) [ 15 ] API from input generated by the Microbiome Toolset .","A visualization of the phylogenetic tree , along with the sample metadata input ( Fig [ 6 ] . ) was produced using the Interactive Tree of Life ( iTOL ) [ 15 ] API from input generated by the Microbiome Toolset . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Application [SEP] Microbiome Toolset","A visualization of the phylogenetic tree , along with the sample metadata input ( Fig [ 6 ] . ) was produced using the Interactive Tree of Life ( iTOL ) [ 15 ] API from input generated by the Microbiome Toolset . [SEP] B-Application [SEP] Microbiome Toolset [SEP] B-Citation [SEP] [ 15 ]"
40,24,B-Application [SEP] Microbiome Toolset,B-Application [SEP] Interactive Tree of Life,41,"A visualization of the phylogenetic tree , along with the sample metadata input ( Fig [ 6 ] . ) was produced using the Interactive Tree of Life ( iTOL ) [ 15 ] API from input generated by the Microbiome Toolset .","A visualization of the phylogenetic tree , along with the sample metadata input ( Fig [ 6 ] . ) was produced using the Interactive Tree of Life ( iTOL ) [ 15 ] API from input generated by the Microbiome Toolset . [SEP] B-Application [SEP] Microbiome Toolset [SEP] B-Application [SEP] Interactive Tree of Life","A visualization of the phylogenetic tree , along with the sample metadata input ( Fig [ 6 ] . ) was produced using the Interactive Tree of Life ( iTOL ) [ 15 ] API from input generated by the Microbiome Toolset . [SEP] B-Application [SEP] Interactive Tree of Life [SEP] B-Application [SEP] Microbiome Toolset"
40,29,B-Application [SEP] Microbiome Toolset,B-Abbreviation [SEP] iTOL,41,"A visualization of the phylogenetic tree , along with the sample metadata input ( Fig [ 6 ] . ) was produced using the Interactive Tree of Life ( iTOL ) [ 15 ] API from input generated by the Microbiome Toolset .","A visualization of the phylogenetic tree , along with the sample metadata input ( Fig [ 6 ] . ) was produced using the Interactive Tree of Life ( iTOL ) [ 15 ] API from input generated by the Microbiome Toolset . [SEP] B-Application [SEP] Microbiome Toolset [SEP] B-Abbreviation [SEP] iTOL","A visualization of the phylogenetic tree , along with the sample metadata input ( Fig [ 6 ] . ) was produced using the Interactive Tree of Life ( iTOL ) [ 15 ] API from input generated by the Microbiome Toolset . [SEP] B-Abbreviation [SEP] iTOL [SEP] B-Application [SEP] Microbiome Toolset"
40,31,B-Application [SEP] Microbiome Toolset,B-Citation [SEP] [ 15 ],41,"A visualization of the phylogenetic tree , along with the sample metadata input ( Fig [ 6 ] . ) was produced using the Interactive Tree of Life ( iTOL ) [ 15 ] API from input generated by the Microbiome Toolset .","A visualization of the phylogenetic tree , along with the sample metadata input ( Fig [ 6 ] . ) was produced using the Interactive Tree of Life ( iTOL ) [ 15 ] API from input generated by the Microbiome Toolset . [SEP] B-Application [SEP] Microbiome Toolset [SEP] B-Citation [SEP] [ 15 ]","A visualization of the phylogenetic tree , along with the sample metadata input ( Fig [ 6 ] . ) was produced using the Interactive Tree of Life ( iTOL ) [ 15 ] API from input generated by the Microbiome Toolset . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Application [SEP] Microbiome Toolset"
17,8,B-URL [SEP] http://genboree.org/java-bin/workbench.jsp,B-Application [SEP] Genboree Workbench,42,The Genboree Microbiome Toolset is part of the Genboree Workbench and can be accessed at the address http://genboree.org/java-bin/workbench.jsp .,The Genboree Microbiome Toolset is part of the Genboree Workbench and can be accessed at the address http://genboree.org/java-bin/workbench.jsp . [SEP] B-URL [SEP] http://genboree.org/java-bin/workbench.jsp [SEP] B-Application [SEP] Genboree Workbench,The Genboree Microbiome Toolset is part of the Genboree Workbench and can be accessed at the address http://genboree.org/java-bin/workbench.jsp . [SEP] B-Application [SEP] Genboree Workbench [SEP] B-URL [SEP] http://genboree.org/java-bin/workbench.jsp
17,1,B-URL [SEP] http://genboree.org/java-bin/workbench.jsp,B-PlugIn [SEP] Genboree Microbiome Toolset,42,The Genboree Microbiome Toolset is part of the Genboree Workbench and can be accessed at the address http://genboree.org/java-bin/workbench.jsp .,The Genboree Microbiome Toolset is part of the Genboree Workbench and can be accessed at the address http://genboree.org/java-bin/workbench.jsp . [SEP] B-URL [SEP] http://genboree.org/java-bin/workbench.jsp [SEP] B-PlugIn [SEP] Genboree Microbiome Toolset,The Genboree Microbiome Toolset is part of the Genboree Workbench and can be accessed at the address http://genboree.org/java-bin/workbench.jsp . [SEP] B-PlugIn [SEP] Genboree Microbiome Toolset [SEP] B-URL [SEP] http://genboree.org/java-bin/workbench.jsp
8,17,B-Application [SEP] Genboree Workbench,B-URL [SEP] http://genboree.org/java-bin/workbench.jsp,42,The Genboree Microbiome Toolset is part of the Genboree Workbench and can be accessed at the address http://genboree.org/java-bin/workbench.jsp .,The Genboree Microbiome Toolset is part of the Genboree Workbench and can be accessed at the address http://genboree.org/java-bin/workbench.jsp . [SEP] B-Application [SEP] Genboree Workbench [SEP] B-URL [SEP] http://genboree.org/java-bin/workbench.jsp,The Genboree Microbiome Toolset is part of the Genboree Workbench and can be accessed at the address http://genboree.org/java-bin/workbench.jsp . [SEP] B-URL [SEP] http://genboree.org/java-bin/workbench.jsp [SEP] B-Application [SEP] Genboree Workbench
8,1,B-Application [SEP] Genboree Workbench,B-PlugIn [SEP] Genboree Microbiome Toolset,42,The Genboree Microbiome Toolset is part of the Genboree Workbench and can be accessed at the address http://genboree.org/java-bin/workbench.jsp .,The Genboree Microbiome Toolset is part of the Genboree Workbench and can be accessed at the address http://genboree.org/java-bin/workbench.jsp . [SEP] B-Application [SEP] Genboree Workbench [SEP] B-PlugIn [SEP] Genboree Microbiome Toolset,The Genboree Microbiome Toolset is part of the Genboree Workbench and can be accessed at the address http://genboree.org/java-bin/workbench.jsp . [SEP] B-PlugIn [SEP] Genboree Microbiome Toolset [SEP] B-Application [SEP] Genboree Workbench
1,17,B-PlugIn [SEP] Genboree Microbiome Toolset,B-URL [SEP] http://genboree.org/java-bin/workbench.jsp,42,The Genboree Microbiome Toolset is part of the Genboree Workbench and can be accessed at the address http://genboree.org/java-bin/workbench.jsp .,The Genboree Microbiome Toolset is part of the Genboree Workbench and can be accessed at the address http://genboree.org/java-bin/workbench.jsp . [SEP] B-PlugIn [SEP] Genboree Microbiome Toolset [SEP] B-URL [SEP] http://genboree.org/java-bin/workbench.jsp,The Genboree Microbiome Toolset is part of the Genboree Workbench and can be accessed at the address http://genboree.org/java-bin/workbench.jsp . [SEP] B-URL [SEP] http://genboree.org/java-bin/workbench.jsp [SEP] B-PlugIn [SEP] Genboree Microbiome Toolset
1,8,B-PlugIn [SEP] Genboree Microbiome Toolset,B-Application [SEP] Genboree Workbench,42,The Genboree Microbiome Toolset is part of the Genboree Workbench and can be accessed at the address http://genboree.org/java-bin/workbench.jsp .,The Genboree Microbiome Toolset is part of the Genboree Workbench and can be accessed at the address http://genboree.org/java-bin/workbench.jsp . [SEP] B-PlugIn [SEP] Genboree Microbiome Toolset [SEP] B-Application [SEP] Genboree Workbench,The Genboree Microbiome Toolset is part of the Genboree Workbench and can be accessed at the address http://genboree.org/java-bin/workbench.jsp . [SEP] B-Application [SEP] Genboree Workbench [SEP] B-PlugIn [SEP] Genboree Microbiome Toolset
3,6,B-Application [SEP] Internet Explorer,B-Version [SEP] 8,43,"Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above .","Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above . [SEP] B-Application [SEP] Internet Explorer [SEP] B-Version [SEP] 8","Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above . [SEP] B-Version [SEP] 8 [SEP] B-Application [SEP] Internet Explorer"
3,10,B-Application [SEP] Internet Explorer,B-Developer [SEP] Mozilla,43,"Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above .","Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above . [SEP] B-Application [SEP] Internet Explorer [SEP] B-Developer [SEP] Mozilla","Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above . [SEP] B-Developer [SEP] Mozilla [SEP] B-Application [SEP] Internet Explorer"
3,11,B-Application [SEP] Internet Explorer,B-Application [SEP] Firefox,43,"Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above .","Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above . [SEP] B-Application [SEP] Internet Explorer [SEP] B-Application [SEP] Firefox","Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above . [SEP] B-Application [SEP] Firefox [SEP] B-Application [SEP] Internet Explorer"
3,13,B-Application [SEP] Internet Explorer,B-Version [SEP] 7,43,"Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above .","Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above . [SEP] B-Application [SEP] Internet Explorer [SEP] B-Version [SEP] 7","Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above . [SEP] B-Version [SEP] 7 [SEP] B-Application [SEP] Internet Explorer"
6,3,B-Version [SEP] 8,B-Application [SEP] Internet Explorer,43,"Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above .","Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above . [SEP] B-Version [SEP] 8 [SEP] B-Application [SEP] Internet Explorer","Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above . [SEP] B-Application [SEP] Internet Explorer [SEP] B-Version [SEP] 8"
6,10,B-Version [SEP] 8,B-Developer [SEP] Mozilla,43,"Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above .","Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above . [SEP] B-Version [SEP] 8 [SEP] B-Developer [SEP] Mozilla","Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above . [SEP] B-Developer [SEP] Mozilla [SEP] B-Version [SEP] 8"
6,11,B-Version [SEP] 8,B-Application [SEP] Firefox,43,"Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above .","Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above . [SEP] B-Version [SEP] 8 [SEP] B-Application [SEP] Firefox","Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above . [SEP] B-Application [SEP] Firefox [SEP] B-Version [SEP] 8"
6,13,B-Version [SEP] 8,B-Version [SEP] 7,43,"Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above .","Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above . [SEP] B-Version [SEP] 8 [SEP] B-Version [SEP] 7","Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above . [SEP] B-Version [SEP] 7 [SEP] B-Version [SEP] 8"
10,3,B-Developer [SEP] Mozilla,B-Application [SEP] Internet Explorer,43,"Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above .","Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above . [SEP] B-Developer [SEP] Mozilla [SEP] B-Application [SEP] Internet Explorer","Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above . [SEP] B-Application [SEP] Internet Explorer [SEP] B-Developer [SEP] Mozilla"
10,6,B-Developer [SEP] Mozilla,B-Version [SEP] 8,43,"Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above .","Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above . [SEP] B-Developer [SEP] Mozilla [SEP] B-Version [SEP] 8","Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above . [SEP] B-Version [SEP] 8 [SEP] B-Developer [SEP] Mozilla"
10,11,B-Developer [SEP] Mozilla,B-Application [SEP] Firefox,43,"Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above .","Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above . [SEP] B-Developer [SEP] Mozilla [SEP] B-Application [SEP] Firefox","Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above . [SEP] B-Application [SEP] Firefox [SEP] B-Developer [SEP] Mozilla"
10,13,B-Developer [SEP] Mozilla,B-Version [SEP] 7,43,"Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above .","Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above . [SEP] B-Developer [SEP] Mozilla [SEP] B-Version [SEP] 7","Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above . [SEP] B-Version [SEP] 7 [SEP] B-Developer [SEP] Mozilla"
11,3,B-Application [SEP] Firefox,B-Application [SEP] Internet Explorer,43,"Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above .","Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above . [SEP] B-Application [SEP] Firefox [SEP] B-Application [SEP] Internet Explorer","Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above . [SEP] B-Application [SEP] Internet Explorer [SEP] B-Application [SEP] Firefox"
11,6,B-Application [SEP] Firefox,B-Version [SEP] 8,43,"Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above .","Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above . [SEP] B-Application [SEP] Firefox [SEP] B-Version [SEP] 8","Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above . [SEP] B-Version [SEP] 8 [SEP] B-Application [SEP] Firefox"
11,10,B-Application [SEP] Firefox,B-Developer [SEP] Mozilla,43,"Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above .","Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above . [SEP] B-Application [SEP] Firefox [SEP] B-Developer [SEP] Mozilla","Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above . [SEP] B-Developer [SEP] Mozilla [SEP] B-Application [SEP] Firefox"
11,13,B-Application [SEP] Firefox,B-Version [SEP] 7,43,"Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above .","Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above . [SEP] B-Application [SEP] Firefox [SEP] B-Version [SEP] 7","Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above . [SEP] B-Version [SEP] 7 [SEP] B-Application [SEP] Firefox"
13,3,B-Version [SEP] 7,B-Application [SEP] Internet Explorer,43,"Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above .","Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above . [SEP] B-Version [SEP] 7 [SEP] B-Application [SEP] Internet Explorer","Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above . [SEP] B-Application [SEP] Internet Explorer [SEP] B-Version [SEP] 7"
13,6,B-Version [SEP] 7,B-Version [SEP] 8,43,"Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above .","Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above . [SEP] B-Version [SEP] 7 [SEP] B-Version [SEP] 8","Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above . [SEP] B-Version [SEP] 8 [SEP] B-Version [SEP] 7"
13,10,B-Version [SEP] 7,B-Developer [SEP] Mozilla,43,"Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above .","Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above . [SEP] B-Version [SEP] 7 [SEP] B-Developer [SEP] Mozilla","Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above . [SEP] B-Developer [SEP] Mozilla [SEP] B-Version [SEP] 7"
13,11,B-Version [SEP] 7,B-Application [SEP] Firefox,43,"Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above .","Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above . [SEP] B-Version [SEP] 7 [SEP] B-Application [SEP] Firefox","Supported browsers are Internet Explorer versions 8 and above , Mozilla Firefox versions 7 and above . [SEP] B-Application [SEP] Firefox [SEP] B-Version [SEP] 7"
0,4,B-SoftwareCoreference [SEP] It,B-URL [SEP] http://it.inf.uni-tuebingen.de/software/reveal/,44,It is available at http://it.inf.uni-tuebingen.de/software/reveal/ .,It is available at http://it.inf.uni-tuebingen.de/software/reveal/ . [SEP] B-SoftwareCoreference [SEP] It [SEP] B-URL [SEP] http://it.inf.uni-tuebingen.de/software/reveal/,It is available at http://it.inf.uni-tuebingen.de/software/reveal/ . [SEP] B-URL [SEP] http://it.inf.uni-tuebingen.de/software/reveal/ [SEP] B-SoftwareCoreference [SEP] It
4,0,B-URL [SEP] http://it.inf.uni-tuebingen.de/software/reveal/,B-SoftwareCoreference [SEP] It,44,It is available at http://it.inf.uni-tuebingen.de/software/reveal/ .,It is available at http://it.inf.uni-tuebingen.de/software/reveal/ . [SEP] B-URL [SEP] http://it.inf.uni-tuebingen.de/software/reveal/ [SEP] B-SoftwareCoreference [SEP] It,It is available at http://it.inf.uni-tuebingen.de/software/reveal/ . [SEP] B-SoftwareCoreference [SEP] It [SEP] B-URL [SEP] http://it.inf.uni-tuebingen.de/software/reveal/
4,10,B-PlugIn [SEP] Reveal,B-Application [SEP] Mayday,45,"Furthermore , we integrated Reveal into our visual analytics software Mayday ( Battke et al . , 2010 ) , allowing for combined and highly interactive analyses of genotypic and expression data as well as meta - data ( e . g . disease phenotype ) .","Furthermore , we integrated Reveal into our visual analytics software Mayday ( Battke et al . , 2010 ) , allowing for combined and highly interactive analyses of genotypic and expression data as well as meta - data ( e . g . disease phenotype ) . [SEP] B-PlugIn [SEP] Reveal [SEP] B-Application [SEP] Mayday","Furthermore , we integrated Reveal into our visual analytics software Mayday ( Battke et al . , 2010 ) , allowing for combined and highly interactive analyses of genotypic and expression data as well as meta - data ( e . g . disease phenotype ) . [SEP] B-Application [SEP] Mayday [SEP] B-PlugIn [SEP] Reveal"
4,12,B-PlugIn [SEP] Reveal,"B-Citation [SEP] Battke et al . ,",45,"Furthermore , we integrated Reveal into our visual analytics software Mayday ( Battke et al . , 2010 ) , allowing for combined and highly interactive analyses of genotypic and expression data as well as meta - data ( e . g . disease phenotype ) .","Furthermore , we integrated Reveal into our visual analytics software Mayday ( Battke et al . , 2010 ) , allowing for combined and highly interactive analyses of genotypic and expression data as well as meta - data ( e . g . disease phenotype ) . [SEP] B-PlugIn [SEP] Reveal [SEP] B-Citation [SEP] Battke et al . ,","Furthermore , we integrated Reveal into our visual analytics software Mayday ( Battke et al . , 2010 ) , allowing for combined and highly interactive analyses of genotypic and expression data as well as meta - data ( e . g . disease phenotype ) . [SEP] B-Citation [SEP] Battke et al . , [SEP] B-PlugIn [SEP] Reveal"
10,4,B-Application [SEP] Mayday,B-PlugIn [SEP] Reveal,45,"Furthermore , we integrated Reveal into our visual analytics software Mayday ( Battke et al . , 2010 ) , allowing for combined and highly interactive analyses of genotypic and expression data as well as meta - data ( e . g . disease phenotype ) .","Furthermore , we integrated Reveal into our visual analytics software Mayday ( Battke et al . , 2010 ) , allowing for combined and highly interactive analyses of genotypic and expression data as well as meta - data ( e . g . disease phenotype ) . [SEP] B-Application [SEP] Mayday [SEP] B-PlugIn [SEP] Reveal","Furthermore , we integrated Reveal into our visual analytics software Mayday ( Battke et al . , 2010 ) , allowing for combined and highly interactive analyses of genotypic and expression data as well as meta - data ( e . g . disease phenotype ) . [SEP] B-PlugIn [SEP] Reveal [SEP] B-Application [SEP] Mayday"
10,12,B-Application [SEP] Mayday,"B-Citation [SEP] Battke et al . ,",45,"Furthermore , we integrated Reveal into our visual analytics software Mayday ( Battke et al . , 2010 ) , allowing for combined and highly interactive analyses of genotypic and expression data as well as meta - data ( e . g . disease phenotype ) .","Furthermore , we integrated Reveal into our visual analytics software Mayday ( Battke et al . , 2010 ) , allowing for combined and highly interactive analyses of genotypic and expression data as well as meta - data ( e . g . disease phenotype ) . [SEP] B-Application [SEP] Mayday [SEP] B-Citation [SEP] Battke et al . ,","Furthermore , we integrated Reveal into our visual analytics software Mayday ( Battke et al . , 2010 ) , allowing for combined and highly interactive analyses of genotypic and expression data as well as meta - data ( e . g . disease phenotype ) . [SEP] B-Citation [SEP] Battke et al . , [SEP] B-Application [SEP] Mayday"
12,4,"B-Citation [SEP] Battke et al . ,",B-PlugIn [SEP] Reveal,45,"Furthermore , we integrated Reveal into our visual analytics software Mayday ( Battke et al . , 2010 ) , allowing for combined and highly interactive analyses of genotypic and expression data as well as meta - data ( e . g . disease phenotype ) .","Furthermore , we integrated Reveal into our visual analytics software Mayday ( Battke et al . , 2010 ) , allowing for combined and highly interactive analyses of genotypic and expression data as well as meta - data ( e . g . disease phenotype ) . [SEP] B-Citation [SEP] Battke et al . , [SEP] B-PlugIn [SEP] Reveal","Furthermore , we integrated Reveal into our visual analytics software Mayday ( Battke et al . , 2010 ) , allowing for combined and highly interactive analyses of genotypic and expression data as well as meta - data ( e . g . disease phenotype ) . [SEP] B-PlugIn [SEP] Reveal [SEP] B-Citation [SEP] Battke et al . ,"
12,10,"B-Citation [SEP] Battke et al . ,",B-Application [SEP] Mayday,45,"Furthermore , we integrated Reveal into our visual analytics software Mayday ( Battke et al . , 2010 ) , allowing for combined and highly interactive analyses of genotypic and expression data as well as meta - data ( e . g . disease phenotype ) .","Furthermore , we integrated Reveal into our visual analytics software Mayday ( Battke et al . , 2010 ) , allowing for combined and highly interactive analyses of genotypic and expression data as well as meta - data ( e . g . disease phenotype ) . [SEP] B-Citation [SEP] Battke et al . , [SEP] B-Application [SEP] Mayday","Furthermore , we integrated Reveal into our visual analytics software Mayday ( Battke et al . , 2010 ) , allowing for combined and highly interactive analyses of genotypic and expression data as well as meta - data ( e . g . disease phenotype ) . [SEP] B-Application [SEP] Mayday [SEP] B-Citation [SEP] Battke et al . ,"
9,7,"B-Citation [SEP] Ge et al . ,",B-Application [SEP] WGAViewer,46,"A popular stand - alone tool is WGAViewer ( Ge et al . , 2008 ) which offers an interactive Manhattan plot embedded into an annotation environment in order to help identify those associations with large biological relevance .","A popular stand - alone tool is WGAViewer ( Ge et al . , 2008 ) which offers an interactive Manhattan plot embedded into an annotation environment in order to help identify those associations with large biological relevance . [SEP] B-Citation [SEP] Ge et al . , [SEP] B-Application [SEP] WGAViewer","A popular stand - alone tool is WGAViewer ( Ge et al . , 2008 ) which offers an interactive Manhattan plot embedded into an annotation environment in order to help identify those associations with large biological relevance . [SEP] B-Application [SEP] WGAViewer [SEP] B-Citation [SEP] Ge et al . ,"
7,9,B-Application [SEP] WGAViewer,"B-Citation [SEP] Ge et al . ,",46,"A popular stand - alone tool is WGAViewer ( Ge et al . , 2008 ) which offers an interactive Manhattan plot embedded into an annotation environment in order to help identify those associations with large biological relevance .","A popular stand - alone tool is WGAViewer ( Ge et al . , 2008 ) which offers an interactive Manhattan plot embedded into an annotation environment in order to help identify those associations with large biological relevance . [SEP] B-Application [SEP] WGAViewer [SEP] B-Citation [SEP] Ge et al . ,","A popular stand - alone tool is WGAViewer ( Ge et al . , 2008 ) which offers an interactive Manhattan plot embedded into an annotation environment in order to help identify those associations with large biological relevance . [SEP] B-Citation [SEP] Ge et al . , [SEP] B-Application [SEP] WGAViewer"
0,2,B-Application [SEP] Genevar,"B-Citation [SEP] Yang et al . ,",47,"Genevar ( Yang et al . , 2010 ) combines a database and a visualization of SNPs associated with gene expression using Manhattan plots .","Genevar ( Yang et al . , 2010 ) combines a database and a visualization of SNPs associated with gene expression using Manhattan plots . [SEP] B-Application [SEP] Genevar [SEP] B-Citation [SEP] Yang et al . ,","Genevar ( Yang et al . , 2010 ) combines a database and a visualization of SNPs associated with gene expression using Manhattan plots . [SEP] B-Citation [SEP] Yang et al . , [SEP] B-Application [SEP] Genevar"
2,0,"B-Citation [SEP] Yang et al . ,",B-Application [SEP] Genevar,47,"Genevar ( Yang et al . , 2010 ) combines a database and a visualization of SNPs associated with gene expression using Manhattan plots .","Genevar ( Yang et al . , 2010 ) combines a database and a visualization of SNPs associated with gene expression using Manhattan plots . [SEP] B-Citation [SEP] Yang et al . , [SEP] B-Application [SEP] Genevar","Genevar ( Yang et al . , 2010 ) combines a database and a visualization of SNPs associated with gene expression using Manhattan plots . [SEP] B-Application [SEP] Genevar [SEP] B-Citation [SEP] Yang et al . ,"
6,9,B-Application [SEP] eQTL Explorer,"B-Citation [SEP] Mueller et al . ,",48,"Two examples for this approach are eQTL Explorer ( Mueller et al . , 2006 ) and the AssociationViewer ( Martin et al . , 2009 ) .","Two examples for this approach are eQTL Explorer ( Mueller et al . , 2006 ) and the AssociationViewer ( Martin et al . , 2009 ) . [SEP] B-Application [SEP] eQTL Explorer [SEP] B-Citation [SEP] Mueller et al . ,","Two examples for this approach are eQTL Explorer ( Mueller et al . , 2006 ) and the AssociationViewer ( Martin et al . , 2009 ) . [SEP] B-Citation [SEP] Mueller et al . , [SEP] B-Application [SEP] eQTL Explorer"
6,17,B-Application [SEP] eQTL Explorer,B-Application [SEP] the,48,"Two examples for this approach are eQTL Explorer ( Mueller et al . , 2006 ) and the AssociationViewer ( Martin et al . , 2009 ) .","Two examples for this approach are eQTL Explorer ( Mueller et al . , 2006 ) and the AssociationViewer ( Martin et al . , 2009 ) . [SEP] B-Application [SEP] eQTL Explorer [SEP] B-Application [SEP] the","Two examples for this approach are eQTL Explorer ( Mueller et al . , 2006 ) and the AssociationViewer ( Martin et al . , 2009 ) . [SEP] B-Application [SEP] the [SEP] B-Application [SEP] eQTL Explorer"
6,19,B-Application [SEP] eQTL Explorer,B-Citation [SEP] ( Martin et al .,48,"Two examples for this approach are eQTL Explorer ( Mueller et al . , 2006 ) and the AssociationViewer ( Martin et al . , 2009 ) .","Two examples for this approach are eQTL Explorer ( Mueller et al . , 2006 ) and the AssociationViewer ( Martin et al . , 2009 ) . [SEP] B-Application [SEP] eQTL Explorer [SEP] B-Citation [SEP] ( Martin et al .","Two examples for this approach are eQTL Explorer ( Mueller et al . , 2006 ) and the AssociationViewer ( Martin et al . , 2009 ) . [SEP] B-Citation [SEP] ( Martin et al . [SEP] B-Application [SEP] eQTL Explorer"
9,6,"B-Citation [SEP] Mueller et al . ,",B-Application [SEP] eQTL Explorer,48,"Two examples for this approach are eQTL Explorer ( Mueller et al . , 2006 ) and the AssociationViewer ( Martin et al . , 2009 ) .","Two examples for this approach are eQTL Explorer ( Mueller et al . , 2006 ) and the AssociationViewer ( Martin et al . , 2009 ) . [SEP] B-Citation [SEP] Mueller et al . , [SEP] B-Application [SEP] eQTL Explorer","Two examples for this approach are eQTL Explorer ( Mueller et al . , 2006 ) and the AssociationViewer ( Martin et al . , 2009 ) . [SEP] B-Application [SEP] eQTL Explorer [SEP] B-Citation [SEP] Mueller et al . ,"
9,17,"B-Citation [SEP] Mueller et al . ,",B-Application [SEP] the,48,"Two examples for this approach are eQTL Explorer ( Mueller et al . , 2006 ) and the AssociationViewer ( Martin et al . , 2009 ) .","Two examples for this approach are eQTL Explorer ( Mueller et al . , 2006 ) and the AssociationViewer ( Martin et al . , 2009 ) . [SEP] B-Citation [SEP] Mueller et al . , [SEP] B-Application [SEP] the","Two examples for this approach are eQTL Explorer ( Mueller et al . , 2006 ) and the AssociationViewer ( Martin et al . , 2009 ) . [SEP] B-Application [SEP] the [SEP] B-Citation [SEP] Mueller et al . ,"
9,19,"B-Citation [SEP] Mueller et al . ,",B-Citation [SEP] ( Martin et al .,48,"Two examples for this approach are eQTL Explorer ( Mueller et al . , 2006 ) and the AssociationViewer ( Martin et al . , 2009 ) .","Two examples for this approach are eQTL Explorer ( Mueller et al . , 2006 ) and the AssociationViewer ( Martin et al . , 2009 ) . [SEP] B-Citation [SEP] Mueller et al . , [SEP] B-Citation [SEP] ( Martin et al .","Two examples for this approach are eQTL Explorer ( Mueller et al . , 2006 ) and the AssociationViewer ( Martin et al . , 2009 ) . [SEP] B-Citation [SEP] ( Martin et al . [SEP] B-Citation [SEP] Mueller et al . ,"
17,6,B-Application [SEP] the,B-Application [SEP] eQTL Explorer,48,"Two examples for this approach are eQTL Explorer ( Mueller et al . , 2006 ) and the AssociationViewer ( Martin et al . , 2009 ) .","Two examples for this approach are eQTL Explorer ( Mueller et al . , 2006 ) and the AssociationViewer ( Martin et al . , 2009 ) . [SEP] B-Application [SEP] the [SEP] B-Application [SEP] eQTL Explorer","Two examples for this approach are eQTL Explorer ( Mueller et al . , 2006 ) and the AssociationViewer ( Martin et al . , 2009 ) . [SEP] B-Application [SEP] eQTL Explorer [SEP] B-Application [SEP] the"
17,9,B-Application [SEP] the,"B-Citation [SEP] Mueller et al . ,",48,"Two examples for this approach are eQTL Explorer ( Mueller et al . , 2006 ) and the AssociationViewer ( Martin et al . , 2009 ) .","Two examples for this approach are eQTL Explorer ( Mueller et al . , 2006 ) and the AssociationViewer ( Martin et al . , 2009 ) . [SEP] B-Application [SEP] the [SEP] B-Citation [SEP] Mueller et al . ,","Two examples for this approach are eQTL Explorer ( Mueller et al . , 2006 ) and the AssociationViewer ( Martin et al . , 2009 ) . [SEP] B-Citation [SEP] Mueller et al . , [SEP] B-Application [SEP] the"
17,19,B-Application [SEP] the,B-Citation [SEP] ( Martin et al .,48,"Two examples for this approach are eQTL Explorer ( Mueller et al . , 2006 ) and the AssociationViewer ( Martin et al . , 2009 ) .","Two examples for this approach are eQTL Explorer ( Mueller et al . , 2006 ) and the AssociationViewer ( Martin et al . , 2009 ) . [SEP] B-Application [SEP] the [SEP] B-Citation [SEP] ( Martin et al .","Two examples for this approach are eQTL Explorer ( Mueller et al . , 2006 ) and the AssociationViewer ( Martin et al . , 2009 ) . [SEP] B-Citation [SEP] ( Martin et al . [SEP] B-Application [SEP] the"
19,6,B-Citation [SEP] ( Martin et al .,B-Application [SEP] eQTL Explorer,48,"Two examples for this approach are eQTL Explorer ( Mueller et al . , 2006 ) and the AssociationViewer ( Martin et al . , 2009 ) .","Two examples for this approach are eQTL Explorer ( Mueller et al . , 2006 ) and the AssociationViewer ( Martin et al . , 2009 ) . [SEP] B-Citation [SEP] ( Martin et al . [SEP] B-Application [SEP] eQTL Explorer","Two examples for this approach are eQTL Explorer ( Mueller et al . , 2006 ) and the AssociationViewer ( Martin et al . , 2009 ) . [SEP] B-Application [SEP] eQTL Explorer [SEP] B-Citation [SEP] ( Martin et al ."
19,9,B-Citation [SEP] ( Martin et al .,"B-Citation [SEP] Mueller et al . ,",48,"Two examples for this approach are eQTL Explorer ( Mueller et al . , 2006 ) and the AssociationViewer ( Martin et al . , 2009 ) .","Two examples for this approach are eQTL Explorer ( Mueller et al . , 2006 ) and the AssociationViewer ( Martin et al . , 2009 ) . [SEP] B-Citation [SEP] ( Martin et al . [SEP] B-Citation [SEP] Mueller et al . ,","Two examples for this approach are eQTL Explorer ( Mueller et al . , 2006 ) and the AssociationViewer ( Martin et al . , 2009 ) . [SEP] B-Citation [SEP] Mueller et al . , [SEP] B-Citation [SEP] ( Martin et al ."
19,17,B-Citation [SEP] ( Martin et al .,B-Application [SEP] the,48,"Two examples for this approach are eQTL Explorer ( Mueller et al . , 2006 ) and the AssociationViewer ( Martin et al . , 2009 ) .","Two examples for this approach are eQTL Explorer ( Mueller et al . , 2006 ) and the AssociationViewer ( Martin et al . , 2009 ) . [SEP] B-Citation [SEP] ( Martin et al . [SEP] B-Application [SEP] the","Two examples for this approach are eQTL Explorer ( Mueller et al . , 2006 ) and the AssociationViewer ( Martin et al . , 2009 ) . [SEP] B-Application [SEP] the [SEP] B-Citation [SEP] ( Martin et al ."
0,3,B-Application [SEP] eQTL Viewer,"B-Citation [SEP] Zou et al . ,",49,"eQTL Viewer ( Zou et al . , 2007 ) is a web - based tool that visualizes the relationships between the expression traits and candidate genes in the eQTL regions .","eQTL Viewer ( Zou et al . , 2007 ) is a web - based tool that visualizes the relationships between the expression traits and candidate genes in the eQTL regions . [SEP] B-Application [SEP] eQTL Viewer [SEP] B-Citation [SEP] Zou et al . ,","eQTL Viewer ( Zou et al . , 2007 ) is a web - based tool that visualizes the relationships between the expression traits and candidate genes in the eQTL regions . [SEP] B-Citation [SEP] Zou et al . , [SEP] B-Application [SEP] eQTL Viewer"
3,0,"B-Citation [SEP] Zou et al . ,",B-Application [SEP] eQTL Viewer,49,"eQTL Viewer ( Zou et al . , 2007 ) is a web - based tool that visualizes the relationships between the expression traits and candidate genes in the eQTL regions .","eQTL Viewer ( Zou et al . , 2007 ) is a web - based tool that visualizes the relationships between the expression traits and candidate genes in the eQTL regions . [SEP] B-Citation [SEP] Zou et al . , [SEP] B-Application [SEP] eQTL Viewer","eQTL Viewer ( Zou et al . , 2007 ) is a web - based tool that visualizes the relationships between the expression traits and candidate genes in the eQTL regions . [SEP] B-Application [SEP] eQTL Viewer [SEP] B-Citation [SEP] Zou et al . ,"
14,16,B-Application [SEP] SNPexp,B-Citation [SEP] Holm et al .,50,"A specialized application to visualize all HapMap genotypes together with gene expression levels is SNPexp ( Holm et al . , 2010 ) .","A specialized application to visualize all HapMap genotypes together with gene expression levels is SNPexp ( Holm et al . , 2010 ) . [SEP] B-Application [SEP] SNPexp [SEP] B-Citation [SEP] Holm et al .","A specialized application to visualize all HapMap genotypes together with gene expression levels is SNPexp ( Holm et al . , 2010 ) . [SEP] B-Citation [SEP] Holm et al . [SEP] B-Application [SEP] SNPexp"
16,14,B-Citation [SEP] Holm et al .,B-Application [SEP] SNPexp,50,"A specialized application to visualize all HapMap genotypes together with gene expression levels is SNPexp ( Holm et al . , 2010 ) .","A specialized application to visualize all HapMap genotypes together with gene expression levels is SNPexp ( Holm et al . , 2010 ) . [SEP] B-Citation [SEP] Holm et al . [SEP] B-Application [SEP] SNPexp","A specialized application to visualize all HapMap genotypes together with gene expression levels is SNPexp ( Holm et al . , 2010 ) . [SEP] B-Application [SEP] SNPexp [SEP] B-Citation [SEP] Holm et al ."
7,9,B-PlugIn [SEP] GenAMap,"B-Citation [SEP] Curtis et al . ,",51,"A visual analytics approach is followed with GenAMap ( Curtis et al . , 2011 ) .","A visual analytics approach is followed with GenAMap ( Curtis et al . , 2011 ) . [SEP] B-PlugIn [SEP] GenAMap [SEP] B-Citation [SEP] Curtis et al . ,","A visual analytics approach is followed with GenAMap ( Curtis et al . , 2011 ) . [SEP] B-Citation [SEP] Curtis et al . , [SEP] B-PlugIn [SEP] GenAMap"
9,7,"B-Citation [SEP] Curtis et al . ,",B-PlugIn [SEP] GenAMap,51,"A visual analytics approach is followed with GenAMap ( Curtis et al . , 2011 ) .","A visual analytics approach is followed with GenAMap ( Curtis et al . , 2011 ) . [SEP] B-Citation [SEP] Curtis et al . , [SEP] B-PlugIn [SEP] GenAMap","A visual analytics approach is followed with GenAMap ( Curtis et al . , 2011 ) . [SEP] B-PlugIn [SEP] GenAMap [SEP] B-Citation [SEP] Curtis et al . ,"
16,24,B-Application [SEP] SVS,B-Release [SEP] 2012,52,"Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser .","Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser . [SEP] B-Application [SEP] SVS [SEP] B-Release [SEP] 2012","Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser . [SEP] B-Release [SEP] 2012 [SEP] B-Application [SEP] SVS"
16,21,B-Application [SEP] SVS,B-Developer [SEP] Golden Helix,52,"Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser .","Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser . [SEP] B-Application [SEP] SVS [SEP] B-Developer [SEP] Golden Helix","Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser . [SEP] B-Developer [SEP] Golden Helix [SEP] B-Application [SEP] SVS"
16,11,B-Application [SEP] SVS,B-Application [SEP] SNP and Variation Suite,52,"Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser .","Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser . [SEP] B-Application [SEP] SVS [SEP] B-Application [SEP] SNP and Variation Suite","Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser . [SEP] B-Application [SEP] SNP and Variation Suite [SEP] B-Application [SEP] SVS"
16,17,B-Application [SEP] SVS,B-Version [SEP] 7,52,"Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser .","Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser . [SEP] B-Application [SEP] SVS [SEP] B-Version [SEP] 7","Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser . [SEP] B-Version [SEP] 7 [SEP] B-Application [SEP] SVS"
24,16,B-Release [SEP] 2012,B-Application [SEP] SVS,52,"Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser .","Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser . [SEP] B-Release [SEP] 2012 [SEP] B-Application [SEP] SVS","Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser . [SEP] B-Application [SEP] SVS [SEP] B-Release [SEP] 2012"
24,21,B-Release [SEP] 2012,B-Developer [SEP] Golden Helix,52,"Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser .","Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser . [SEP] B-Release [SEP] 2012 [SEP] B-Developer [SEP] Golden Helix","Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser . [SEP] B-Developer [SEP] Golden Helix [SEP] B-Release [SEP] 2012"
24,11,B-Release [SEP] 2012,B-Application [SEP] SNP and Variation Suite,52,"Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser .","Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser . [SEP] B-Release [SEP] 2012 [SEP] B-Application [SEP] SNP and Variation Suite","Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser . [SEP] B-Application [SEP] SNP and Variation Suite [SEP] B-Release [SEP] 2012"
24,17,B-Release [SEP] 2012,B-Version [SEP] 7,52,"Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser .","Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser . [SEP] B-Release [SEP] 2012 [SEP] B-Version [SEP] 7","Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser . [SEP] B-Version [SEP] 7 [SEP] B-Release [SEP] 2012"
21,16,B-Developer [SEP] Golden Helix,B-Application [SEP] SVS,52,"Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser .","Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser . [SEP] B-Developer [SEP] Golden Helix [SEP] B-Application [SEP] SVS","Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser . [SEP] B-Application [SEP] SVS [SEP] B-Developer [SEP] Golden Helix"
21,24,B-Developer [SEP] Golden Helix,B-Release [SEP] 2012,52,"Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser .","Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser . [SEP] B-Developer [SEP] Golden Helix [SEP] B-Release [SEP] 2012","Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser . [SEP] B-Release [SEP] 2012 [SEP] B-Developer [SEP] Golden Helix"
21,11,B-Developer [SEP] Golden Helix,B-Application [SEP] SNP and Variation Suite,52,"Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser .","Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser . [SEP] B-Developer [SEP] Golden Helix [SEP] B-Application [SEP] SNP and Variation Suite","Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser . [SEP] B-Application [SEP] SNP and Variation Suite [SEP] B-Developer [SEP] Golden Helix"
21,17,B-Developer [SEP] Golden Helix,B-Version [SEP] 7,52,"Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser .","Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser . [SEP] B-Developer [SEP] Golden Helix [SEP] B-Version [SEP] 7","Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser . [SEP] B-Version [SEP] 7 [SEP] B-Developer [SEP] Golden Helix"
11,16,B-Application [SEP] SNP and Variation Suite,B-Application [SEP] SVS,52,"Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser .","Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser . [SEP] B-Application [SEP] SNP and Variation Suite [SEP] B-Application [SEP] SVS","Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser . [SEP] B-Application [SEP] SVS [SEP] B-Application [SEP] SNP and Variation Suite"
11,24,B-Application [SEP] SNP and Variation Suite,B-Release [SEP] 2012,52,"Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser .","Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser . [SEP] B-Application [SEP] SNP and Variation Suite [SEP] B-Release [SEP] 2012","Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser . [SEP] B-Release [SEP] 2012 [SEP] B-Application [SEP] SNP and Variation Suite"
11,21,B-Application [SEP] SNP and Variation Suite,B-Developer [SEP] Golden Helix,52,"Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser .","Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser . [SEP] B-Application [SEP] SNP and Variation Suite [SEP] B-Developer [SEP] Golden Helix","Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser . [SEP] B-Developer [SEP] Golden Helix [SEP] B-Application [SEP] SNP and Variation Suite"
11,17,B-Application [SEP] SNP and Variation Suite,B-Version [SEP] 7,52,"Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser .","Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser . [SEP] B-Application [SEP] SNP and Variation Suite [SEP] B-Version [SEP] 7","Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser . [SEP] B-Version [SEP] 7 [SEP] B-Application [SEP] SNP and Variation Suite"
17,16,B-Version [SEP] 7,B-Application [SEP] SVS,52,"Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser .","Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser . [SEP] B-Version [SEP] 7 [SEP] B-Application [SEP] SVS","Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser . [SEP] B-Application [SEP] SVS [SEP] B-Version [SEP] 7"
17,24,B-Version [SEP] 7,B-Release [SEP] 2012,52,"Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser .","Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser . [SEP] B-Version [SEP] 7 [SEP] B-Release [SEP] 2012","Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser . [SEP] B-Release [SEP] 2012 [SEP] B-Version [SEP] 7"
17,21,B-Version [SEP] 7,B-Developer [SEP] Golden Helix,52,"Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser .","Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser . [SEP] B-Version [SEP] 7 [SEP] B-Developer [SEP] Golden Helix","Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser . [SEP] B-Developer [SEP] Golden Helix [SEP] B-Version [SEP] 7"
17,11,B-Version [SEP] 7,B-Application [SEP] SNP and Variation Suite,52,"Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser .","Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser . [SEP] B-Version [SEP] 7 [SEP] B-Application [SEP] SNP and Variation Suite","Among the commercial tools for this type of data , the SNP and Variation Suite ( SVS 7 ) by ( Golden Helix , 2012 ) offer various statistical tests and visualization within an integrated genome browser . [SEP] B-Application [SEP] SNP and Variation Suite [SEP] B-Version [SEP] 7"
0,3,B-Developer [SEP] Agilent,B-Application [SEP] GeneSpring,53,"Agilent ' s GeneSpring ( Agilent , 2012 ) has a number of statistical and visualization methods for GWASs , however , no specific eQTL analysis methods are offered .","Agilent ' s GeneSpring ( Agilent , 2012 ) has a number of statistical and visualization methods for GWASs , however , no specific eQTL analysis methods are offered . [SEP] B-Developer [SEP] Agilent [SEP] B-Application [SEP] GeneSpring","Agilent ' s GeneSpring ( Agilent , 2012 ) has a number of statistical and visualization methods for GWASs , however , no specific eQTL analysis methods are offered . [SEP] B-Application [SEP] GeneSpring [SEP] B-Developer [SEP] Agilent"
0,7,B-Developer [SEP] Agilent,B-Release [SEP] 2012,53,"Agilent ' s GeneSpring ( Agilent , 2012 ) has a number of statistical and visualization methods for GWASs , however , no specific eQTL analysis methods are offered .","Agilent ' s GeneSpring ( Agilent , 2012 ) has a number of statistical and visualization methods for GWASs , however , no specific eQTL analysis methods are offered . [SEP] B-Developer [SEP] Agilent [SEP] B-Release [SEP] 2012","Agilent ' s GeneSpring ( Agilent , 2012 ) has a number of statistical and visualization methods for GWASs , however , no specific eQTL analysis methods are offered . [SEP] B-Release [SEP] 2012 [SEP] B-Developer [SEP] Agilent"
3,0,B-Application [SEP] GeneSpring,B-Developer [SEP] Agilent,53,"Agilent ' s GeneSpring ( Agilent , 2012 ) has a number of statistical and visualization methods for GWASs , however , no specific eQTL analysis methods are offered .","Agilent ' s GeneSpring ( Agilent , 2012 ) has a number of statistical and visualization methods for GWASs , however , no specific eQTL analysis methods are offered . [SEP] B-Application [SEP] GeneSpring [SEP] B-Developer [SEP] Agilent","Agilent ' s GeneSpring ( Agilent , 2012 ) has a number of statistical and visualization methods for GWASs , however , no specific eQTL analysis methods are offered . [SEP] B-Developer [SEP] Agilent [SEP] B-Application [SEP] GeneSpring"
3,5,B-Application [SEP] GeneSpring,B-Developer [SEP] Agilent,53,"Agilent ' s GeneSpring ( Agilent , 2012 ) has a number of statistical and visualization methods for GWASs , however , no specific eQTL analysis methods are offered .","Agilent ' s GeneSpring ( Agilent , 2012 ) has a number of statistical and visualization methods for GWASs , however , no specific eQTL analysis methods are offered . [SEP] B-Application [SEP] GeneSpring [SEP] B-Developer [SEP] Agilent","Agilent ' s GeneSpring ( Agilent , 2012 ) has a number of statistical and visualization methods for GWASs , however , no specific eQTL analysis methods are offered . [SEP] B-Developer [SEP] Agilent [SEP] B-Application [SEP] GeneSpring"
3,7,B-Application [SEP] GeneSpring,B-Release [SEP] 2012,53,"Agilent ' s GeneSpring ( Agilent , 2012 ) has a number of statistical and visualization methods for GWASs , however , no specific eQTL analysis methods are offered .","Agilent ' s GeneSpring ( Agilent , 2012 ) has a number of statistical and visualization methods for GWASs , however , no specific eQTL analysis methods are offered . [SEP] B-Application [SEP] GeneSpring [SEP] B-Release [SEP] 2012","Agilent ' s GeneSpring ( Agilent , 2012 ) has a number of statistical and visualization methods for GWASs , however , no specific eQTL analysis methods are offered . [SEP] B-Release [SEP] 2012 [SEP] B-Application [SEP] GeneSpring"
5,3,B-Developer [SEP] Agilent,B-Application [SEP] GeneSpring,53,"Agilent ' s GeneSpring ( Agilent , 2012 ) has a number of statistical and visualization methods for GWASs , however , no specific eQTL analysis methods are offered .","Agilent ' s GeneSpring ( Agilent , 2012 ) has a number of statistical and visualization methods for GWASs , however , no specific eQTL analysis methods are offered . [SEP] B-Developer [SEP] Agilent [SEP] B-Application [SEP] GeneSpring","Agilent ' s GeneSpring ( Agilent , 2012 ) has a number of statistical and visualization methods for GWASs , however , no specific eQTL analysis methods are offered . [SEP] B-Application [SEP] GeneSpring [SEP] B-Developer [SEP] Agilent"
5,7,B-Developer [SEP] Agilent,B-Release [SEP] 2012,53,"Agilent ' s GeneSpring ( Agilent , 2012 ) has a number of statistical and visualization methods for GWASs , however , no specific eQTL analysis methods are offered .","Agilent ' s GeneSpring ( Agilent , 2012 ) has a number of statistical and visualization methods for GWASs , however , no specific eQTL analysis methods are offered . [SEP] B-Developer [SEP] Agilent [SEP] B-Release [SEP] 2012","Agilent ' s GeneSpring ( Agilent , 2012 ) has a number of statistical and visualization methods for GWASs , however , no specific eQTL analysis methods are offered . [SEP] B-Release [SEP] 2012 [SEP] B-Developer [SEP] Agilent"
7,0,B-Release [SEP] 2012,B-Developer [SEP] Agilent,53,"Agilent ' s GeneSpring ( Agilent , 2012 ) has a number of statistical and visualization methods for GWASs , however , no specific eQTL analysis methods are offered .","Agilent ' s GeneSpring ( Agilent , 2012 ) has a number of statistical and visualization methods for GWASs , however , no specific eQTL analysis methods are offered . [SEP] B-Release [SEP] 2012 [SEP] B-Developer [SEP] Agilent","Agilent ' s GeneSpring ( Agilent , 2012 ) has a number of statistical and visualization methods for GWASs , however , no specific eQTL analysis methods are offered . [SEP] B-Developer [SEP] Agilent [SEP] B-Release [SEP] 2012"
7,3,B-Release [SEP] 2012,B-Application [SEP] GeneSpring,53,"Agilent ' s GeneSpring ( Agilent , 2012 ) has a number of statistical and visualization methods for GWASs , however , no specific eQTL analysis methods are offered .","Agilent ' s GeneSpring ( Agilent , 2012 ) has a number of statistical and visualization methods for GWASs , however , no specific eQTL analysis methods are offered . [SEP] B-Release [SEP] 2012 [SEP] B-Application [SEP] GeneSpring","Agilent ' s GeneSpring ( Agilent , 2012 ) has a number of statistical and visualization methods for GWASs , however , no specific eQTL analysis methods are offered . [SEP] B-Application [SEP] GeneSpring [SEP] B-Release [SEP] 2012"
7,5,B-Release [SEP] 2012,B-Developer [SEP] Agilent,53,"Agilent ' s GeneSpring ( Agilent , 2012 ) has a number of statistical and visualization methods for GWASs , however , no specific eQTL analysis methods are offered .","Agilent ' s GeneSpring ( Agilent , 2012 ) has a number of statistical and visualization methods for GWASs , however , no specific eQTL analysis methods are offered . [SEP] B-Release [SEP] 2012 [SEP] B-Developer [SEP] Agilent","Agilent ' s GeneSpring ( Agilent , 2012 ) has a number of statistical and visualization methods for GWASs , however , no specific eQTL analysis methods are offered . [SEP] B-Developer [SEP] Agilent [SEP] B-Release [SEP] 2012"
0,1,B-Developer [SEP] Illumina,B-Application [SEP] GenomeStudio [UNK],54,"Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer .","Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer . [SEP] B-Developer [SEP] Illumina [SEP] B-Application [SEP] GenomeStudio [UNK]","Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer . [SEP] B-Application [SEP] GenomeStudio [UNK] [SEP] B-Developer [SEP] Illumina"
0,6,B-Developer [SEP] Illumina,B-Release [SEP] 2012,54,"Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer .","Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer . [SEP] B-Developer [SEP] Illumina [SEP] B-Release [SEP] 2012","Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer . [SEP] B-Release [SEP] 2012 [SEP] B-Developer [SEP] Illumina"
0,14,B-Developer [SEP] Illumina,B-Application [SEP] PLINK,54,"Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer .","Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer . [SEP] B-Developer [SEP] Illumina [SEP] B-Application [SEP] PLINK","Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer . [SEP] B-Application [SEP] PLINK [SEP] B-Developer [SEP] Illumina"
1,0,B-Application [SEP] GenomeStudio [UNK],B-Developer [SEP] Illumina,54,"Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer .","Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer . [SEP] B-Application [SEP] GenomeStudio [UNK] [SEP] B-Developer [SEP] Illumina","Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer . [SEP] B-Developer [SEP] Illumina [SEP] B-Application [SEP] GenomeStudio [UNK]"
1,4,B-Application [SEP] GenomeStudio [UNK],B-Developer [SEP] Illumina,54,"Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer .","Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer . [SEP] B-Application [SEP] GenomeStudio [UNK] [SEP] B-Developer [SEP] Illumina","Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer . [SEP] B-Developer [SEP] Illumina [SEP] B-Application [SEP] GenomeStudio [UNK]"
1,6,B-Application [SEP] GenomeStudio [UNK],B-Release [SEP] 2012,54,"Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer .","Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer . [SEP] B-Application [SEP] GenomeStudio [UNK] [SEP] B-Release [SEP] 2012","Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer . [SEP] B-Release [SEP] 2012 [SEP] B-Application [SEP] GenomeStudio [UNK]"
1,14,B-Application [SEP] GenomeStudio [UNK],B-Application [SEP] PLINK,54,"Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer .","Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer . [SEP] B-Application [SEP] GenomeStudio [UNK] [SEP] B-Application [SEP] PLINK","Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer . [SEP] B-Application [SEP] PLINK [SEP] B-Application [SEP] GenomeStudio [UNK]"
4,1,B-Developer [SEP] Illumina,B-Application [SEP] GenomeStudio [UNK],54,"Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer .","Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer . [SEP] B-Developer [SEP] Illumina [SEP] B-Application [SEP] GenomeStudio [UNK]","Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer . [SEP] B-Application [SEP] GenomeStudio [UNK] [SEP] B-Developer [SEP] Illumina"
4,6,B-Developer [SEP] Illumina,B-Release [SEP] 2012,54,"Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer .","Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer . [SEP] B-Developer [SEP] Illumina [SEP] B-Release [SEP] 2012","Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer . [SEP] B-Release [SEP] 2012 [SEP] B-Developer [SEP] Illumina"
4,14,B-Developer [SEP] Illumina,B-Application [SEP] PLINK,54,"Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer .","Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer . [SEP] B-Developer [SEP] Illumina [SEP] B-Application [SEP] PLINK","Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer . [SEP] B-Application [SEP] PLINK [SEP] B-Developer [SEP] Illumina"
6,0,B-Release [SEP] 2012,B-Developer [SEP] Illumina,54,"Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer .","Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer . [SEP] B-Release [SEP] 2012 [SEP] B-Developer [SEP] Illumina","Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer . [SEP] B-Developer [SEP] Illumina [SEP] B-Release [SEP] 2012"
6,1,B-Release [SEP] 2012,B-Application [SEP] GenomeStudio [UNK],54,"Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer .","Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer . [SEP] B-Release [SEP] 2012 [SEP] B-Application [SEP] GenomeStudio [UNK]","Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer . [SEP] B-Application [SEP] GenomeStudio [UNK] [SEP] B-Release [SEP] 2012"
6,4,B-Release [SEP] 2012,B-Developer [SEP] Illumina,54,"Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer .","Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer . [SEP] B-Release [SEP] 2012 [SEP] B-Developer [SEP] Illumina","Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer . [SEP] B-Developer [SEP] Illumina [SEP] B-Release [SEP] 2012"
6,14,B-Release [SEP] 2012,B-Application [SEP] PLINK,54,"Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer .","Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer . [SEP] B-Release [SEP] 2012 [SEP] B-Application [SEP] PLINK","Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer . [SEP] B-Application [SEP] PLINK [SEP] B-Release [SEP] 2012"
14,0,B-Application [SEP] PLINK,B-Developer [SEP] Illumina,54,"Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer .","Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer . [SEP] B-Application [SEP] PLINK [SEP] B-Developer [SEP] Illumina","Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer . [SEP] B-Developer [SEP] Illumina [SEP] B-Application [SEP] PLINK"
14,1,B-Application [SEP] PLINK,B-Application [SEP] GenomeStudio [UNK],54,"Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer .","Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer . [SEP] B-Application [SEP] PLINK [SEP] B-Application [SEP] GenomeStudio [UNK]","Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer . [SEP] B-Application [SEP] GenomeStudio [UNK] [SEP] B-Application [SEP] PLINK"
14,4,B-Application [SEP] PLINK,B-Developer [SEP] Illumina,54,"Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer .","Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer . [SEP] B-Application [SEP] PLINK [SEP] B-Developer [SEP] Illumina","Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer . [SEP] B-Developer [SEP] Illumina [SEP] B-Application [SEP] PLINK"
14,6,B-Application [SEP] PLINK,B-Release [SEP] 2012,54,"Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer .","Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer . [SEP] B-Application [SEP] PLINK [SEP] B-Release [SEP] 2012","Illumina GenomeStudio [UNK] ( Illumina , 2012 ) also offers an integrated use of PLINK as well as a QTL viewer . [SEP] B-Release [SEP] 2012 [SEP] B-Application [SEP] PLINK"
9,12,B-Application [SEP] PLINK,"B-Citation [SEP] Purcell et al . ,",55,"On these data , statistical methods such as the PLINK tool ( Purcell et al . , 2007 ) can be used to compute the significance of the association between any SNP ( or pair of SNPs ) and differences in gene expression .","On these data , statistical methods such as the PLINK tool ( Purcell et al . , 2007 ) can be used to compute the significance of the association between any SNP ( or pair of SNPs ) and differences in gene expression . [SEP] B-Application [SEP] PLINK [SEP] B-Citation [SEP] Purcell et al . ,","On these data , statistical methods such as the PLINK tool ( Purcell et al . , 2007 ) can be used to compute the significance of the association between any SNP ( or pair of SNPs ) and differences in gene expression . [SEP] B-Citation [SEP] Purcell et al . , [SEP] B-Application [SEP] PLINK"
12,9,"B-Citation [SEP] Purcell et al . ,",B-Application [SEP] PLINK,55,"On these data , statistical methods such as the PLINK tool ( Purcell et al . , 2007 ) can be used to compute the significance of the association between any SNP ( or pair of SNPs ) and differences in gene expression .","On these data , statistical methods such as the PLINK tool ( Purcell et al . , 2007 ) can be used to compute the significance of the association between any SNP ( or pair of SNPs ) and differences in gene expression . [SEP] B-Citation [SEP] Purcell et al . , [SEP] B-Application [SEP] PLINK","On these data , statistical methods such as the PLINK tool ( Purcell et al . , 2007 ) can be used to compute the significance of the association between any SNP ( or pair of SNPs ) and differences in gene expression . [SEP] B-Application [SEP] PLINK [SEP] B-Citation [SEP] Purcell et al . ,"
27,24,B-Citation [SEP] ( O ' Madadhain et al .,B-PlugIn [SEP] the,56,"User interaction further includes panning , rotating and zooming , as well as rearranging nodes either manually or using layout algorithms ( provided by the Jung library ( O ' Madadhain et al . , 2005 ) ) .","User interaction further includes panning , rotating and zooming , as well as rearranging nodes either manually or using layout algorithms ( provided by the Jung library ( O ' Madadhain et al . , 2005 ) ) . [SEP] B-Citation [SEP] ( O ' Madadhain et al . [SEP] B-PlugIn [SEP] the","User interaction further includes panning , rotating and zooming , as well as rearranging nodes either manually or using layout algorithms ( provided by the Jung library ( O ' Madadhain et al . , 2005 ) ) . [SEP] B-PlugIn [SEP] the [SEP] B-Citation [SEP] ( O ' Madadhain et al ."
24,27,B-PlugIn [SEP] the,B-Citation [SEP] ( O ' Madadhain et al .,56,"User interaction further includes panning , rotating and zooming , as well as rearranging nodes either manually or using layout algorithms ( provided by the Jung library ( O ' Madadhain et al . , 2005 ) ) .","User interaction further includes panning , rotating and zooming , as well as rearranging nodes either manually or using layout algorithms ( provided by the Jung library ( O ' Madadhain et al . , 2005 ) ) . [SEP] B-PlugIn [SEP] the [SEP] B-Citation [SEP] ( O ' Madadhain et al .","User interaction further includes panning , rotating and zooming , as well as rearranging nodes either manually or using layout algorithms ( provided by the Jung library ( O ' Madadhain et al . , 2005 ) ) . [SEP] B-Citation [SEP] ( O ' Madadhain et al . [SEP] B-PlugIn [SEP] the"
9,11,B-Application [SEP] iHat,"B-Citation [SEP] Heinrich et al . ,",57,"Here , we use the same aggregation strategy as iHat ( Heinrich et al . , 2012 ) , our previously published prototype tool for visual analytics of GWASs .","Here , we use the same aggregation strategy as iHat ( Heinrich et al . , 2012 ) , our previously published prototype tool for visual analytics of GWASs . [SEP] B-Application [SEP] iHat [SEP] B-Citation [SEP] Heinrich et al . ,","Here , we use the same aggregation strategy as iHat ( Heinrich et al . , 2012 ) , our previously published prototype tool for visual analytics of GWASs . [SEP] B-Citation [SEP] Heinrich et al . , [SEP] B-Application [SEP] iHat"
11,9,"B-Citation [SEP] Heinrich et al . ,",B-Application [SEP] iHat,57,"Here , we use the same aggregation strategy as iHat ( Heinrich et al . , 2012 ) , our previously published prototype tool for visual analytics of GWASs .","Here , we use the same aggregation strategy as iHat ( Heinrich et al . , 2012 ) , our previously published prototype tool for visual analytics of GWASs . [SEP] B-Citation [SEP] Heinrich et al . , [SEP] B-Application [SEP] iHat","Here , we use the same aggregation strategy as iHat ( Heinrich et al . , 2012 ) , our previously published prototype tool for visual analytics of GWASs . [SEP] B-Application [SEP] iHat [SEP] B-Citation [SEP] Heinrich et al . ,"
25,31,B-Application [SEP] Mayday,B-Version [SEP] 3 . 3,58,"Further interactions include scrolling , zooming and interactive selection of SNPs of interest , which can then be used for example to be displayed in Mayday ' s genome browser . 3 . 3 eQTL expression .","Further interactions include scrolling , zooming and interactive selection of SNPs of interest , which can then be used for example to be displayed in Mayday ' s genome browser . 3 . 3 eQTL expression . [SEP] B-Application [SEP] Mayday [SEP] B-Version [SEP] 3 . 3","Further interactions include scrolling , zooming and interactive selection of SNPs of interest , which can then be used for example to be displayed in Mayday ' s genome browser . 3 . 3 eQTL expression . [SEP] B-Version [SEP] 3 . 3 [SEP] B-Application [SEP] Mayday"
25,34,B-Application [SEP] Mayday,B-Application [SEP] eQTL,58,"Further interactions include scrolling , zooming and interactive selection of SNPs of interest , which can then be used for example to be displayed in Mayday ' s genome browser . 3 . 3 eQTL expression .","Further interactions include scrolling , zooming and interactive selection of SNPs of interest , which can then be used for example to be displayed in Mayday ' s genome browser . 3 . 3 eQTL expression . [SEP] B-Application [SEP] Mayday [SEP] B-Application [SEP] eQTL","Further interactions include scrolling , zooming and interactive selection of SNPs of interest , which can then be used for example to be displayed in Mayday ' s genome browser . 3 . 3 eQTL expression . [SEP] B-Application [SEP] eQTL [SEP] B-Application [SEP] Mayday"
31,25,B-Version [SEP] 3 . 3,B-Application [SEP] Mayday,58,"Further interactions include scrolling , zooming and interactive selection of SNPs of interest , which can then be used for example to be displayed in Mayday ' s genome browser . 3 . 3 eQTL expression .","Further interactions include scrolling , zooming and interactive selection of SNPs of interest , which can then be used for example to be displayed in Mayday ' s genome browser . 3 . 3 eQTL expression . [SEP] B-Version [SEP] 3 . 3 [SEP] B-Application [SEP] Mayday","Further interactions include scrolling , zooming and interactive selection of SNPs of interest , which can then be used for example to be displayed in Mayday ' s genome browser . 3 . 3 eQTL expression . [SEP] B-Application [SEP] Mayday [SEP] B-Version [SEP] 3 . 3"
31,34,B-Version [SEP] 3 . 3,B-Application [SEP] eQTL,58,"Further interactions include scrolling , zooming and interactive selection of SNPs of interest , which can then be used for example to be displayed in Mayday ' s genome browser . 3 . 3 eQTL expression .","Further interactions include scrolling , zooming and interactive selection of SNPs of interest , which can then be used for example to be displayed in Mayday ' s genome browser . 3 . 3 eQTL expression . [SEP] B-Version [SEP] 3 . 3 [SEP] B-Application [SEP] eQTL","Further interactions include scrolling , zooming and interactive selection of SNPs of interest , which can then be used for example to be displayed in Mayday ' s genome browser . 3 . 3 eQTL expression . [SEP] B-Application [SEP] eQTL [SEP] B-Version [SEP] 3 . 3"
34,25,B-Application [SEP] eQTL,B-Application [SEP] Mayday,58,"Further interactions include scrolling , zooming and interactive selection of SNPs of interest , which can then be used for example to be displayed in Mayday ' s genome browser . 3 . 3 eQTL expression .","Further interactions include scrolling , zooming and interactive selection of SNPs of interest , which can then be used for example to be displayed in Mayday ' s genome browser . 3 . 3 eQTL expression . [SEP] B-Application [SEP] eQTL [SEP] B-Application [SEP] Mayday","Further interactions include scrolling , zooming and interactive selection of SNPs of interest , which can then be used for example to be displayed in Mayday ' s genome browser . 3 . 3 eQTL expression . [SEP] B-Application [SEP] Mayday [SEP] B-Application [SEP] eQTL"
34,31,B-Application [SEP] eQTL,B-Version [SEP] 3 . 3,58,"Further interactions include scrolling , zooming and interactive selection of SNPs of interest , which can then be used for example to be displayed in Mayday ' s genome browser . 3 . 3 eQTL expression .","Further interactions include scrolling , zooming and interactive selection of SNPs of interest , which can then be used for example to be displayed in Mayday ' s genome browser . 3 . 3 eQTL expression . [SEP] B-Application [SEP] eQTL [SEP] B-Version [SEP] 3 . 3","Further interactions include scrolling , zooming and interactive selection of SNPs of interest , which can then be used for example to be displayed in Mayday ' s genome browser . 3 . 3 eQTL expression . [SEP] B-Version [SEP] 3 . 3 [SEP] B-Application [SEP] eQTL"
3,25,B-Application [SEP] Reveal,B-URL [SEP] http://it.inf.uni-tuebingen.de/software/reveal,59,"To illustrate how Reveal can be used to analyze eQTL data , we applied it to the data provided for the BioVis 2011 Contest ( http://it.inf.uni-tuebingen.de/software/reveal ) .","To illustrate how Reveal can be used to analyze eQTL data , we applied it to the data provided for the BioVis 2011 Contest ( http://it.inf.uni-tuebingen.de/software/reveal ) . [SEP] B-Application [SEP] Reveal [SEP] B-URL [SEP] http://it.inf.uni-tuebingen.de/software/reveal","To illustrate how Reveal can be used to analyze eQTL data , we applied it to the data provided for the BioVis 2011 Contest ( http://it.inf.uni-tuebingen.de/software/reveal ) . [SEP] B-URL [SEP] http://it.inf.uni-tuebingen.de/software/reveal [SEP] B-Application [SEP] Reveal"
25,3,B-URL [SEP] http://it.inf.uni-tuebingen.de/software/reveal,B-Application [SEP] Reveal,59,"To illustrate how Reveal can be used to analyze eQTL data , we applied it to the data provided for the BioVis 2011 Contest ( http://it.inf.uni-tuebingen.de/software/reveal ) .","To illustrate how Reveal can be used to analyze eQTL data , we applied it to the data provided for the BioVis 2011 Contest ( http://it.inf.uni-tuebingen.de/software/reveal ) . [SEP] B-URL [SEP] http://it.inf.uni-tuebingen.de/software/reveal [SEP] B-Application [SEP] Reveal","To illustrate how Reveal can be used to analyze eQTL data , we applied it to the data provided for the BioVis 2011 Contest ( http://it.inf.uni-tuebingen.de/software/reveal ) . [SEP] B-Application [SEP] Reveal [SEP] B-URL [SEP] http://it.inf.uni-tuebingen.de/software/reveal"
6,9,B-Developer [SEP] Illumina,B-URL [SEP] http://www.illumina.com,60,"All samples were sequenced with the Illumina technology ( http://www.illumina.com ) , which is now the most commonly used NGS platform for RNA - seq [ 32 ] .","All samples were sequenced with the Illumina technology ( http://www.illumina.com ) , which is now the most commonly used NGS platform for RNA - seq [ 32 ] . [SEP] B-Developer [SEP] Illumina [SEP] B-URL [SEP] http://www.illumina.com","All samples were sequenced with the Illumina technology ( http://www.illumina.com ) , which is now the most commonly used NGS platform for RNA - seq [ 32 ] . [SEP] B-URL [SEP] http://www.illumina.com [SEP] B-Developer [SEP] Illumina"
6,19,B-Developer [SEP] Illumina,B-Application [SEP] NGS,60,"All samples were sequenced with the Illumina technology ( http://www.illumina.com ) , which is now the most commonly used NGS platform for RNA - seq [ 32 ] .","All samples were sequenced with the Illumina technology ( http://www.illumina.com ) , which is now the most commonly used NGS platform for RNA - seq [ 32 ] . [SEP] B-Developer [SEP] Illumina [SEP] B-Application [SEP] NGS","All samples were sequenced with the Illumina technology ( http://www.illumina.com ) , which is now the most commonly used NGS platform for RNA - seq [ 32 ] . [SEP] B-Application [SEP] NGS [SEP] B-Developer [SEP] Illumina"
6,25,B-Developer [SEP] Illumina,B-Citation [SEP] [ 32 ],60,"All samples were sequenced with the Illumina technology ( http://www.illumina.com ) , which is now the most commonly used NGS platform for RNA - seq [ 32 ] .","All samples were sequenced with the Illumina technology ( http://www.illumina.com ) , which is now the most commonly used NGS platform for RNA - seq [ 32 ] . [SEP] B-Developer [SEP] Illumina [SEP] B-Citation [SEP] [ 32 ]","All samples were sequenced with the Illumina technology ( http://www.illumina.com ) , which is now the most commonly used NGS platform for RNA - seq [ 32 ] . [SEP] B-Citation [SEP] [ 32 ] [SEP] B-Developer [SEP] Illumina"
9,6,B-URL [SEP] http://www.illumina.com,B-Developer [SEP] Illumina,60,"All samples were sequenced with the Illumina technology ( http://www.illumina.com ) , which is now the most commonly used NGS platform for RNA - seq [ 32 ] .","All samples were sequenced with the Illumina technology ( http://www.illumina.com ) , which is now the most commonly used NGS platform for RNA - seq [ 32 ] . [SEP] B-URL [SEP] http://www.illumina.com [SEP] B-Developer [SEP] Illumina","All samples were sequenced with the Illumina technology ( http://www.illumina.com ) , which is now the most commonly used NGS platform for RNA - seq [ 32 ] . [SEP] B-Developer [SEP] Illumina [SEP] B-URL [SEP] http://www.illumina.com"
9,19,B-URL [SEP] http://www.illumina.com,B-Application [SEP] NGS,60,"All samples were sequenced with the Illumina technology ( http://www.illumina.com ) , which is now the most commonly used NGS platform for RNA - seq [ 32 ] .","All samples were sequenced with the Illumina technology ( http://www.illumina.com ) , which is now the most commonly used NGS platform for RNA - seq [ 32 ] . [SEP] B-URL [SEP] http://www.illumina.com [SEP] B-Application [SEP] NGS","All samples were sequenced with the Illumina technology ( http://www.illumina.com ) , which is now the most commonly used NGS platform for RNA - seq [ 32 ] . [SEP] B-Application [SEP] NGS [SEP] B-URL [SEP] http://www.illumina.com"
9,25,B-URL [SEP] http://www.illumina.com,B-Citation [SEP] [ 32 ],60,"All samples were sequenced with the Illumina technology ( http://www.illumina.com ) , which is now the most commonly used NGS platform for RNA - seq [ 32 ] .","All samples were sequenced with the Illumina technology ( http://www.illumina.com ) , which is now the most commonly used NGS platform for RNA - seq [ 32 ] . [SEP] B-URL [SEP] http://www.illumina.com [SEP] B-Citation [SEP] [ 32 ]","All samples were sequenced with the Illumina technology ( http://www.illumina.com ) , which is now the most commonly used NGS platform for RNA - seq [ 32 ] . [SEP] B-Citation [SEP] [ 32 ] [SEP] B-URL [SEP] http://www.illumina.com"
19,6,B-Application [SEP] NGS,B-Developer [SEP] Illumina,60,"All samples were sequenced with the Illumina technology ( http://www.illumina.com ) , which is now the most commonly used NGS platform for RNA - seq [ 32 ] .","All samples were sequenced with the Illumina technology ( http://www.illumina.com ) , which is now the most commonly used NGS platform for RNA - seq [ 32 ] . [SEP] B-Application [SEP] NGS [SEP] B-Developer [SEP] Illumina","All samples were sequenced with the Illumina technology ( http://www.illumina.com ) , which is now the most commonly used NGS platform for RNA - seq [ 32 ] . [SEP] B-Developer [SEP] Illumina [SEP] B-Application [SEP] NGS"
19,9,B-Application [SEP] NGS,B-URL [SEP] http://www.illumina.com,60,"All samples were sequenced with the Illumina technology ( http://www.illumina.com ) , which is now the most commonly used NGS platform for RNA - seq [ 32 ] .","All samples were sequenced with the Illumina technology ( http://www.illumina.com ) , which is now the most commonly used NGS platform for RNA - seq [ 32 ] . [SEP] B-Application [SEP] NGS [SEP] B-URL [SEP] http://www.illumina.com","All samples were sequenced with the Illumina technology ( http://www.illumina.com ) , which is now the most commonly used NGS platform for RNA - seq [ 32 ] . [SEP] B-URL [SEP] http://www.illumina.com [SEP] B-Application [SEP] NGS"
19,25,B-Application [SEP] NGS,B-Citation [SEP] [ 32 ],60,"All samples were sequenced with the Illumina technology ( http://www.illumina.com ) , which is now the most commonly used NGS platform for RNA - seq [ 32 ] .","All samples were sequenced with the Illumina technology ( http://www.illumina.com ) , which is now the most commonly used NGS platform for RNA - seq [ 32 ] . [SEP] B-Application [SEP] NGS [SEP] B-Citation [SEP] [ 32 ]","All samples were sequenced with the Illumina technology ( http://www.illumina.com ) , which is now the most commonly used NGS platform for RNA - seq [ 32 ] . [SEP] B-Citation [SEP] [ 32 ] [SEP] B-Application [SEP] NGS"
25,6,B-Citation [SEP] [ 32 ],B-Developer [SEP] Illumina,60,"All samples were sequenced with the Illumina technology ( http://www.illumina.com ) , which is now the most commonly used NGS platform for RNA - seq [ 32 ] .","All samples were sequenced with the Illumina technology ( http://www.illumina.com ) , which is now the most commonly used NGS platform for RNA - seq [ 32 ] . [SEP] B-Citation [SEP] [ 32 ] [SEP] B-Developer [SEP] Illumina","All samples were sequenced with the Illumina technology ( http://www.illumina.com ) , which is now the most commonly used NGS platform for RNA - seq [ 32 ] . [SEP] B-Developer [SEP] Illumina [SEP] B-Citation [SEP] [ 32 ]"
25,9,B-Citation [SEP] [ 32 ],B-URL [SEP] http://www.illumina.com,60,"All samples were sequenced with the Illumina technology ( http://www.illumina.com ) , which is now the most commonly used NGS platform for RNA - seq [ 32 ] .","All samples were sequenced with the Illumina technology ( http://www.illumina.com ) , which is now the most commonly used NGS platform for RNA - seq [ 32 ] . [SEP] B-Citation [SEP] [ 32 ] [SEP] B-URL [SEP] http://www.illumina.com","All samples were sequenced with the Illumina technology ( http://www.illumina.com ) , which is now the most commonly used NGS platform for RNA - seq [ 32 ] . [SEP] B-URL [SEP] http://www.illumina.com [SEP] B-Citation [SEP] [ 32 ]"
25,19,B-Citation [SEP] [ 32 ],B-Application [SEP] NGS,60,"All samples were sequenced with the Illumina technology ( http://www.illumina.com ) , which is now the most commonly used NGS platform for RNA - seq [ 32 ] .","All samples were sequenced with the Illumina technology ( http://www.illumina.com ) , which is now the most commonly used NGS platform for RNA - seq [ 32 ] . [SEP] B-Citation [SEP] [ 32 ] [SEP] B-Application [SEP] NGS","All samples were sequenced with the Illumina technology ( http://www.illumina.com ) , which is now the most commonly used NGS platform for RNA - seq [ 32 ] . [SEP] B-Application [SEP] NGS [SEP] B-Citation [SEP] [ 32 ]"
14,13,B-Citation [SEP] [ 33 ],B-Application [SEP] TopHat,61,"In the second phase , paired - ends and singletons were mapped with TopHat [ 33 ] in a two - steps procedure .","In the second phase , paired - ends and singletons were mapped with TopHat [ 33 ] in a two - steps procedure . [SEP] B-Citation [SEP] [ 33 ] [SEP] B-Application [SEP] TopHat","In the second phase , paired - ends and singletons were mapped with TopHat [ 33 ] in a two - steps procedure . [SEP] B-Application [SEP] TopHat [SEP] B-Citation [SEP] [ 33 ]"
13,14,B-Application [SEP] TopHat,B-Citation [SEP] [ 33 ],61,"In the second phase , paired - ends and singletons were mapped with TopHat [ 33 ] in a two - steps procedure .","In the second phase , paired - ends and singletons were mapped with TopHat [ 33 ] in a two - steps procedure . [SEP] B-Application [SEP] TopHat [SEP] B-Citation [SEP] [ 33 ]","In the second phase , paired - ends and singletons were mapped with TopHat [ 33 ] in a two - steps procedure . [SEP] B-Citation [SEP] [ 33 ] [SEP] B-Application [SEP] TopHat"
19,20,B-Application [SEP] merge,B-Citation [SEP] utility of samtools,62,Alignment files from paired - end and singleton reads were finally merged in a single BAM file using the merge utility of samtools [ 34 ] .,Alignment files from paired - end and singleton reads were finally merged in a single BAM file using the merge utility of samtools [ 34 ] . [SEP] B-Application [SEP] merge [SEP] B-Citation [SEP] utility of samtools,Alignment files from paired - end and singleton reads were finally merged in a single BAM file using the merge utility of samtools [ 34 ] . [SEP] B-Citation [SEP] utility of samtools [SEP] B-Application [SEP] merge
20,19,B-Citation [SEP] utility of samtools,B-Application [SEP] merge,62,Alignment files from paired - end and singleton reads were finally merged in a single BAM file using the merge utility of samtools [ 34 ] .,Alignment files from paired - end and singleton reads were finally merged in a single BAM file using the merge utility of samtools [ 34 ] . [SEP] B-Citation [SEP] utility of samtools [SEP] B-Application [SEP] merge,Alignment files from paired - end and singleton reads were finally merged in a single BAM file using the merge utility of samtools [ 34 ] . [SEP] B-Application [SEP] merge [SEP] B-Citation [SEP] utility of samtools
4,5,B-Application [SEP] bedtools,B-Citation [SEP] [ 35 ],63,Totcounts were computed using bedtools [ 35 ] .,Totcounts were computed using bedtools [ 35 ] . [SEP] B-Application [SEP] bedtools [SEP] B-Citation [SEP] [ 35 ],Totcounts were computed using bedtools [ 35 ] . [SEP] B-Citation [SEP] [ 35 ] [SEP] B-Application [SEP] bedtools
5,4,B-Citation [SEP] [ 35 ],B-Application [SEP] bedtools,63,Totcounts were computed using bedtools [ 35 ] .,Totcounts were computed using bedtools [ 35 ] . [SEP] B-Citation [SEP] [ 35 ] [SEP] B-Application [SEP] bedtools,Totcounts were computed using bedtools [ 35 ] . [SEP] B-Application [SEP] bedtools [SEP] B-Citation [SEP] [ 35 ]
11,17,B-Application [SEP] for,B-URL [SEP] from,64,"We implemented the method for computing maxcounts in a new patch for bedtools that can be downloaded from http://www.dei.unipd.it/~finotell/maxcounts/ ( see additional details in "" Additional file [ 1 ] "" ) .","We implemented the method for computing maxcounts in a new patch for bedtools that can be downloaded from http://www.dei.unipd.it/~finotell/maxcounts/ ( see additional details in "" Additional file [ 1 ] "" ) . [SEP] B-Application [SEP] for [SEP] B-URL [SEP] from","We implemented the method for computing maxcounts in a new patch for bedtools that can be downloaded from http://www.dei.unipd.it/~finotell/maxcounts/ ( see additional details in "" Additional file [ 1 ] "" ) . [SEP] B-URL [SEP] from [SEP] B-Application [SEP] for"
17,11,B-URL [SEP] from,B-Application [SEP] for,64,"We implemented the method for computing maxcounts in a new patch for bedtools that can be downloaded from http://www.dei.unipd.it/~finotell/maxcounts/ ( see additional details in "" Additional file [ 1 ] "" ) .","We implemented the method for computing maxcounts in a new patch for bedtools that can be downloaded from http://www.dei.unipd.it/~finotell/maxcounts/ ( see additional details in "" Additional file [ 1 ] "" ) . [SEP] B-URL [SEP] from [SEP] B-Application [SEP] for","We implemented the method for computing maxcounts in a new patch for bedtools that can be downloaded from http://www.dei.unipd.it/~finotell/maxcounts/ ( see additional details in "" Additional file [ 1 ] "" ) . [SEP] B-Application [SEP] for [SEP] B-URL [SEP] from"
15,16,B-Application [SEP] EDASeq,B-Citation [SEP] [ 24 ],65,Within - lane full - quantile normalization of counts on exon length was performed using EDASeq [ 24 ] .,Within - lane full - quantile normalization of counts on exon length was performed using EDASeq [ 24 ] . [SEP] B-Application [SEP] EDASeq [SEP] B-Citation [SEP] [ 24 ],Within - lane full - quantile normalization of counts on exon length was performed using EDASeq [ 24 ] . [SEP] B-Citation [SEP] [ 24 ] [SEP] B-Application [SEP] EDASeq
16,15,B-Citation [SEP] [ 24 ],B-Application [SEP] EDASeq,65,Within - lane full - quantile normalization of counts on exon length was performed using EDASeq [ 24 ] .,Within - lane full - quantile normalization of counts on exon length was performed using EDASeq [ 24 ] . [SEP] B-Citation [SEP] [ 24 ] [SEP] B-Application [SEP] EDASeq,Within - lane full - quantile normalization of counts on exon length was performed using EDASeq [ 24 ] . [SEP] B-Application [SEP] EDASeq [SEP] B-Citation [SEP] [ 24 ]
15,17,B-Application [SEP] OpenBEL,B-Citation [SEP] [ 29 ],66,Further biological processes can be described using cause - and - effect relationships from the OpenBEL framework [ 29 ] .,Further biological processes can be described using cause - and - effect relationships from the OpenBEL framework [ 29 ] . [SEP] B-Application [SEP] OpenBEL [SEP] B-Citation [SEP] [ 29 ],Further biological processes can be described using cause - and - effect relationships from the OpenBEL framework [ 29 ] . [SEP] B-Citation [SEP] [ 29 ] [SEP] B-Application [SEP] OpenBEL
17,15,B-Citation [SEP] [ 29 ],B-Application [SEP] OpenBEL,66,Further biological processes can be described using cause - and - effect relationships from the OpenBEL framework [ 29 ] .,Further biological processes can be described using cause - and - effect relationships from the OpenBEL framework [ 29 ] . [SEP] B-Citation [SEP] [ 29 ] [SEP] B-Application [SEP] OpenBEL,Further biological processes can be described using cause - and - effect relationships from the OpenBEL framework [ 29 ] . [SEP] B-Application [SEP] OpenBEL [SEP] B-Citation [SEP] [ 29 ]
27,22,B-Version [SEP] version 2 . 14 .,B-ProgrammingEnvironment [SEP] the,67,Raw RNA expression data were analyzed using the affy and gcrma packages of the Bioconductor suite of microarray analysis tools available in the R statistical environment ( version 2 . 14 . 0 ) .,Raw RNA expression data were analyzed using the affy and gcrma packages of the Bioconductor suite of microarray analysis tools available in the R statistical environment ( version 2 . 14 . 0 ) . [SEP] B-Version [SEP] version 2 . 14 . [SEP] B-ProgrammingEnvironment [SEP] the,Raw RNA expression data were analyzed using the affy and gcrma packages of the Bioconductor suite of microarray analysis tools available in the R statistical environment ( version 2 . 14 . 0 ) . [SEP] B-ProgrammingEnvironment [SEP] the [SEP] B-Version [SEP] version 2 . 14 .
27,8,B-Version [SEP] version 2 . 14 .,B-PlugIn [SEP] affy,67,Raw RNA expression data were analyzed using the affy and gcrma packages of the Bioconductor suite of microarray analysis tools available in the R statistical environment ( version 2 . 14 . 0 ) .,Raw RNA expression data were analyzed using the affy and gcrma packages of the Bioconductor suite of microarray analysis tools available in the R statistical environment ( version 2 . 14 . 0 ) . [SEP] B-Version [SEP] version 2 . 14 . [SEP] B-PlugIn [SEP] affy,Raw RNA expression data were analyzed using the affy and gcrma packages of the Bioconductor suite of microarray analysis tools available in the R statistical environment ( version 2 . 14 . 0 ) . [SEP] B-PlugIn [SEP] affy [SEP] B-Version [SEP] version 2 . 14 .
27,10,B-Version [SEP] version 2 . 14 .,B-PlugIn [SEP] gcrma,67,Raw RNA expression data were analyzed using the affy and gcrma packages of the Bioconductor suite of microarray analysis tools available in the R statistical environment ( version 2 . 14 . 0 ) .,Raw RNA expression data were analyzed using the affy and gcrma packages of the Bioconductor suite of microarray analysis tools available in the R statistical environment ( version 2 . 14 . 0 ) . [SEP] B-Version [SEP] version 2 . 14 . [SEP] B-PlugIn [SEP] gcrma,Raw RNA expression data were analyzed using the affy and gcrma packages of the Bioconductor suite of microarray analysis tools available in the R statistical environment ( version 2 . 14 . 0 ) . [SEP] B-PlugIn [SEP] gcrma [SEP] B-Version [SEP] version 2 . 14 .
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22,27,B-ProgrammingEnvironment [SEP] the,B-Version [SEP] version 2 . 14 .,67,Raw RNA expression data were analyzed using the affy and gcrma packages of the Bioconductor suite of microarray analysis tools available in the R statistical environment ( version 2 . 14 . 0 ) .,Raw RNA expression data were analyzed using the affy and gcrma packages of the Bioconductor suite of microarray analysis tools available in the R statistical environment ( version 2 . 14 . 0 ) . [SEP] B-ProgrammingEnvironment [SEP] the [SEP] B-Version [SEP] version 2 . 14 .,Raw RNA expression data were analyzed using the affy and gcrma packages of the Bioconductor suite of microarray analysis tools available in the R statistical environment ( version 2 . 14 . 0 ) . [SEP] B-Version [SEP] version 2 . 14 . [SEP] B-ProgrammingEnvironment [SEP] the
22,8,B-ProgrammingEnvironment [SEP] the,B-PlugIn [SEP] affy,67,Raw RNA expression data were analyzed using the affy and gcrma packages of the Bioconductor suite of microarray analysis tools available in the R statistical environment ( version 2 . 14 . 0 ) .,Raw RNA expression data were analyzed using the affy and gcrma packages of the Bioconductor suite of microarray analysis tools available in the R statistical environment ( version 2 . 14 . 0 ) . [SEP] B-ProgrammingEnvironment [SEP] the [SEP] B-PlugIn [SEP] affy,Raw RNA expression data were analyzed using the affy and gcrma packages of the Bioconductor suite of microarray analysis tools available in the R statistical environment ( version 2 . 14 . 0 ) . [SEP] B-PlugIn [SEP] affy [SEP] B-ProgrammingEnvironment [SEP] the
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8,10,B-PlugIn [SEP] affy,B-PlugIn [SEP] gcrma,67,Raw RNA expression data were analyzed using the affy and gcrma packages of the Bioconductor suite of microarray analysis tools available in the R statistical environment ( version 2 . 14 . 0 ) .,Raw RNA expression data were analyzed using the affy and gcrma packages of the Bioconductor suite of microarray analysis tools available in the R statistical environment ( version 2 . 14 . 0 ) . [SEP] B-PlugIn [SEP] affy [SEP] B-PlugIn [SEP] gcrma,Raw RNA expression data were analyzed using the affy and gcrma packages of the Bioconductor suite of microarray analysis tools available in the R statistical environment ( version 2 . 14 . 0 ) . [SEP] B-PlugIn [SEP] gcrma [SEP] B-PlugIn [SEP] affy
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10,13,B-PlugIn [SEP] gcrma,B-PlugIn [SEP] the,67,Raw RNA expression data were analyzed using the affy and gcrma packages of the Bioconductor suite of microarray analysis tools available in the R statistical environment ( version 2 . 14 . 0 ) .,Raw RNA expression data were analyzed using the affy and gcrma packages of the Bioconductor suite of microarray analysis tools available in the R statistical environment ( version 2 . 14 . 0 ) . [SEP] B-PlugIn [SEP] gcrma [SEP] B-PlugIn [SEP] the,Raw RNA expression data were analyzed using the affy and gcrma packages of the Bioconductor suite of microarray analysis tools available in the R statistical environment ( version 2 . 14 . 0 ) . [SEP] B-PlugIn [SEP] the [SEP] B-PlugIn [SEP] gcrma
13,27,B-PlugIn [SEP] the,B-Version [SEP] version 2 . 14 .,67,Raw RNA expression data were analyzed using the affy and gcrma packages of the Bioconductor suite of microarray analysis tools available in the R statistical environment ( version 2 . 14 . 0 ) .,Raw RNA expression data were analyzed using the affy and gcrma packages of the Bioconductor suite of microarray analysis tools available in the R statistical environment ( version 2 . 14 . 0 ) . [SEP] B-PlugIn [SEP] the [SEP] B-Version [SEP] version 2 . 14 .,Raw RNA expression data were analyzed using the affy and gcrma packages of the Bioconductor suite of microarray analysis tools available in the R statistical environment ( version 2 . 14 . 0 ) . [SEP] B-Version [SEP] version 2 . 14 . [SEP] B-PlugIn [SEP] the
13,22,B-PlugIn [SEP] the,B-ProgrammingEnvironment [SEP] the,67,Raw RNA expression data were analyzed using the affy and gcrma packages of the Bioconductor suite of microarray analysis tools available in the R statistical environment ( version 2 . 14 . 0 ) .,Raw RNA expression data were analyzed using the affy and gcrma packages of the Bioconductor suite of microarray analysis tools available in the R statistical environment ( version 2 . 14 . 0 ) . [SEP] B-PlugIn [SEP] the [SEP] B-ProgrammingEnvironment [SEP] the,Raw RNA expression data were analyzed using the affy and gcrma packages of the Bioconductor suite of microarray analysis tools available in the R statistical environment ( version 2 . 14 . 0 ) . [SEP] B-ProgrammingEnvironment [SEP] the [SEP] B-PlugIn [SEP] the
13,8,B-PlugIn [SEP] the,B-PlugIn [SEP] affy,67,Raw RNA expression data were analyzed using the affy and gcrma packages of the Bioconductor suite of microarray analysis tools available in the R statistical environment ( version 2 . 14 . 0 ) .,Raw RNA expression data were analyzed using the affy and gcrma packages of the Bioconductor suite of microarray analysis tools available in the R statistical environment ( version 2 . 14 . 0 ) . [SEP] B-PlugIn [SEP] the [SEP] B-PlugIn [SEP] affy,Raw RNA expression data were analyzed using the affy and gcrma packages of the Bioconductor suite of microarray analysis tools available in the R statistical environment ( version 2 . 14 . 0 ) . [SEP] B-PlugIn [SEP] affy [SEP] B-PlugIn [SEP] the
13,10,B-PlugIn [SEP] the,B-PlugIn [SEP] gcrma,67,Raw RNA expression data were analyzed using the affy and gcrma packages of the Bioconductor suite of microarray analysis tools available in the R statistical environment ( version 2 . 14 . 0 ) .,Raw RNA expression data were analyzed using the affy and gcrma packages of the Bioconductor suite of microarray analysis tools available in the R statistical environment ( version 2 . 14 . 0 ) . [SEP] B-PlugIn [SEP] the [SEP] B-PlugIn [SEP] gcrma,Raw RNA expression data were analyzed using the affy and gcrma packages of the Bioconductor suite of microarray analysis tools available in the R statistical environment ( version 2 . 14 . 0 ) . [SEP] B-PlugIn [SEP] gcrma [SEP] B-PlugIn [SEP] the
13,14,B-Application [SEP] limma,B-Citation [SEP] [ 42 ],68,The fold - changes and their moderated t - statistics were computed using limma [ 42 ] .,The fold - changes and their moderated t - statistics were computed using limma [ 42 ] . [SEP] B-Application [SEP] limma [SEP] B-Citation [SEP] [ 42 ],The fold - changes and their moderated t - statistics were computed using limma [ 42 ] . [SEP] B-Citation [SEP] [ 42 ] [SEP] B-Application [SEP] limma
14,13,B-Citation [SEP] [ 42 ],B-Application [SEP] limma,68,The fold - changes and their moderated t - statistics were computed using limma [ 42 ] .,The fold - changes and their moderated t - statistics were computed using limma [ 42 ] . [SEP] B-Citation [SEP] [ 42 ] [SEP] B-Application [SEP] limma,The fold - changes and their moderated t - statistics were computed using limma [ 42 ] . [SEP] B-Application [SEP] limma [SEP] B-Citation [SEP] [ 42 ]
29,33,B-Application [SEP] in Ingenuity Pathway,B-Citation [SEP] software [ 43,69,"This paradigm is becoming increasingly popular [ 21 , 23 , 43 , 44 ] and among others , “ backward - causal ” features have been introduced recently in Ingenuity Pathway Analysis software [ 43 ] .","This paradigm is becoming increasingly popular [ 21 , 23 , 43 , 44 ] and among others , “ backward - causal ” features have been introduced recently in Ingenuity Pathway Analysis software [ 43 ] . [SEP] B-Application [SEP] in Ingenuity Pathway [SEP] B-Citation [SEP] software [ 43","This paradigm is becoming increasingly popular [ 21 , 23 , 43 , 44 ] and among others , “ backward - causal ” features have been introduced recently in Ingenuity Pathway Analysis software [ 43 ] . [SEP] B-Citation [SEP] software [ 43 [SEP] B-Application [SEP] in Ingenuity Pathway"
33,29,B-Citation [SEP] software [ 43,B-Application [SEP] in Ingenuity Pathway,69,"This paradigm is becoming increasingly popular [ 21 , 23 , 43 , 44 ] and among others , “ backward - causal ” features have been introduced recently in Ingenuity Pathway Analysis software [ 43 ] .","This paradigm is becoming increasingly popular [ 21 , 23 , 43 , 44 ] and among others , “ backward - causal ” features have been introduced recently in Ingenuity Pathway Analysis software [ 43 ] . [SEP] B-Citation [SEP] software [ 43 [SEP] B-Application [SEP] in Ingenuity Pathway","This paradigm is becoming increasingly popular [ 21 , 23 , 43 , 44 ] and among others , “ backward - causal ” features have been introduced recently in Ingenuity Pathway Analysis software [ 43 ] . [SEP] B-Application [SEP] in Ingenuity Pathway [SEP] B-Citation [SEP] software [ 43"
19,13,B-Abbreviation [SEP] CDMS,B-Application [SEP] OpenClinica Clinical Data Management System,70,"To facilitate this task , the study data is manually entered into the OpenClinica Clinical Data Management System ( CDMS ) by study staff [ 13 ] .","To facilitate this task , the study data is manually entered into the OpenClinica Clinical Data Management System ( CDMS ) by study staff [ 13 ] . [SEP] B-Abbreviation [SEP] CDMS [SEP] B-Application [SEP] OpenClinica Clinical Data Management System","To facilitate this task , the study data is manually entered into the OpenClinica Clinical Data Management System ( CDMS ) by study staff [ 13 ] . [SEP] B-Application [SEP] OpenClinica Clinical Data Management System [SEP] B-Abbreviation [SEP] CDMS"
19,24,B-Abbreviation [SEP] CDMS,B-Citation [SEP] [ 13 ],70,"To facilitate this task , the study data is manually entered into the OpenClinica Clinical Data Management System ( CDMS ) by study staff [ 13 ] .","To facilitate this task , the study data is manually entered into the OpenClinica Clinical Data Management System ( CDMS ) by study staff [ 13 ] . [SEP] B-Abbreviation [SEP] CDMS [SEP] B-Citation [SEP] [ 13 ]","To facilitate this task , the study data is manually entered into the OpenClinica Clinical Data Management System ( CDMS ) by study staff [ 13 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Abbreviation [SEP] CDMS"
13,19,B-Application [SEP] OpenClinica Clinical Data Management System,B-Abbreviation [SEP] CDMS,70,"To facilitate this task , the study data is manually entered into the OpenClinica Clinical Data Management System ( CDMS ) by study staff [ 13 ] .","To facilitate this task , the study data is manually entered into the OpenClinica Clinical Data Management System ( CDMS ) by study staff [ 13 ] . [SEP] B-Application [SEP] OpenClinica Clinical Data Management System [SEP] B-Abbreviation [SEP] CDMS","To facilitate this task , the study data is manually entered into the OpenClinica Clinical Data Management System ( CDMS ) by study staff [ 13 ] . [SEP] B-Abbreviation [SEP] CDMS [SEP] B-Application [SEP] OpenClinica Clinical Data Management System"
13,24,B-Application [SEP] OpenClinica Clinical Data Management System,B-Citation [SEP] [ 13 ],70,"To facilitate this task , the study data is manually entered into the OpenClinica Clinical Data Management System ( CDMS ) by study staff [ 13 ] .","To facilitate this task , the study data is manually entered into the OpenClinica Clinical Data Management System ( CDMS ) by study staff [ 13 ] . [SEP] B-Application [SEP] OpenClinica Clinical Data Management System [SEP] B-Citation [SEP] [ 13 ]","To facilitate this task , the study data is manually entered into the OpenClinica Clinical Data Management System ( CDMS ) by study staff [ 13 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Application [SEP] OpenClinica Clinical Data Management System"
24,19,B-Citation [SEP] [ 13 ],B-Abbreviation [SEP] CDMS,70,"To facilitate this task , the study data is manually entered into the OpenClinica Clinical Data Management System ( CDMS ) by study staff [ 13 ] .","To facilitate this task , the study data is manually entered into the OpenClinica Clinical Data Management System ( CDMS ) by study staff [ 13 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Abbreviation [SEP] CDMS","To facilitate this task , the study data is manually entered into the OpenClinica Clinical Data Management System ( CDMS ) by study staff [ 13 ] . [SEP] B-Abbreviation [SEP] CDMS [SEP] B-Citation [SEP] [ 13 ]"
24,13,B-Citation [SEP] [ 13 ],B-Application [SEP] OpenClinica Clinical Data Management System,70,"To facilitate this task , the study data is manually entered into the OpenClinica Clinical Data Management System ( CDMS ) by study staff [ 13 ] .","To facilitate this task , the study data is manually entered into the OpenClinica Clinical Data Management System ( CDMS ) by study staff [ 13 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Application [SEP] OpenClinica Clinical Data Management System","To facilitate this task , the study data is manually entered into the OpenClinica Clinical Data Management System ( CDMS ) by study staff [ 13 ] . [SEP] B-Application [SEP] OpenClinica Clinical Data Management System [SEP] B-Citation [SEP] [ 13 ]"
0,1,B-Application [SEP] OpenClinica,B-Citation [SEP] [ 14 ],71,OpenClinica [ 14 ] is an open - source CDMS for collecting and managing clinical data .,OpenClinica [ 14 ] is an open - source CDMS for collecting and managing clinical data . [SEP] B-Application [SEP] OpenClinica [SEP] B-Citation [SEP] [ 14 ],OpenClinica [ 14 ] is an open - source CDMS for collecting and managing clinical data . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Application [SEP] OpenClinica
1,0,B-Citation [SEP] [ 14 ],B-Application [SEP] OpenClinica,71,OpenClinica [ 14 ] is an open - source CDMS for collecting and managing clinical data .,OpenClinica [ 14 ] is an open - source CDMS for collecting and managing clinical data . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Application [SEP] OpenClinica,OpenClinica [ 14 ] is an open - source CDMS for collecting and managing clinical data . [SEP] B-Application [SEP] OpenClinica [SEP] B-Citation [SEP] [ 14 ]
36,30,B-Extension [SEP] LTS (,B-OperatingSystem [SEP] and,72,"These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) .","These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) . [SEP] B-Extension [SEP] LTS ( [SEP] B-OperatingSystem [SEP] and","These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) . [SEP] B-OperatingSystem [SEP] and [SEP] B-Extension [SEP] LTS ("
36,31,B-Extension [SEP] LTS (,B-Version [SEP] running Ubuntu 13 .,72,"These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) .","These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) . [SEP] B-Extension [SEP] LTS ( [SEP] B-Version [SEP] running Ubuntu 13 .","These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) . [SEP] B-Version [SEP] running Ubuntu 13 . [SEP] B-Extension [SEP] LTS ("
36,7,B-Extension [SEP] LTS (,B-Version [SEP] Virtuoso 6 .,72,"These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) .","These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) . [SEP] B-Extension [SEP] LTS ( [SEP] B-Version [SEP] Virtuoso 6 .","These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) . [SEP] B-Version [SEP] Virtuoso 6 . [SEP] B-Extension [SEP] LTS ("
36,6,B-Extension [SEP] LTS (,B-Application [SEP] a,72,"These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) .","These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) . [SEP] B-Extension [SEP] LTS ( [SEP] B-Application [SEP] a","These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) . [SEP] B-Application [SEP] a [SEP] B-Extension [SEP] LTS ("
30,36,B-OperatingSystem [SEP] and,B-Extension [SEP] LTS (,72,"These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) .","These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) . [SEP] B-OperatingSystem [SEP] and [SEP] B-Extension [SEP] LTS (","These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) . [SEP] B-Extension [SEP] LTS ( [SEP] B-OperatingSystem [SEP] and"
30,31,B-OperatingSystem [SEP] and,B-Version [SEP] running Ubuntu 13 .,72,"These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) .","These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) . [SEP] B-OperatingSystem [SEP] and [SEP] B-Version [SEP] running Ubuntu 13 .","These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) . [SEP] B-Version [SEP] running Ubuntu 13 . [SEP] B-OperatingSystem [SEP] and"
30,7,B-OperatingSystem [SEP] and,B-Version [SEP] Virtuoso 6 .,72,"These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) .","These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) . [SEP] B-OperatingSystem [SEP] and [SEP] B-Version [SEP] Virtuoso 6 .","These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) . [SEP] B-Version [SEP] Virtuoso 6 . [SEP] B-OperatingSystem [SEP] and"
30,6,B-OperatingSystem [SEP] and,B-Application [SEP] a,72,"These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) .","These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) . [SEP] B-OperatingSystem [SEP] and [SEP] B-Application [SEP] a","These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) . [SEP] B-Application [SEP] a [SEP] B-OperatingSystem [SEP] and"
31,36,B-Version [SEP] running Ubuntu 13 .,B-Extension [SEP] LTS (,72,"These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) .","These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) . [SEP] B-Version [SEP] running Ubuntu 13 . [SEP] B-Extension [SEP] LTS (","These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) . [SEP] B-Extension [SEP] LTS ( [SEP] B-Version [SEP] running Ubuntu 13 ."
31,30,B-Version [SEP] running Ubuntu 13 .,B-OperatingSystem [SEP] and,72,"These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) .","These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) . [SEP] B-Version [SEP] running Ubuntu 13 . [SEP] B-OperatingSystem [SEP] and","These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) . [SEP] B-OperatingSystem [SEP] and [SEP] B-Version [SEP] running Ubuntu 13 ."
31,7,B-Version [SEP] running Ubuntu 13 .,B-Version [SEP] Virtuoso 6 .,72,"These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) .","These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) . [SEP] B-Version [SEP] running Ubuntu 13 . [SEP] B-Version [SEP] Virtuoso 6 .","These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) . [SEP] B-Version [SEP] Virtuoso 6 . [SEP] B-Version [SEP] running Ubuntu 13 ."
31,6,B-Version [SEP] running Ubuntu 13 .,B-Application [SEP] a,72,"These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) .","These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) . [SEP] B-Version [SEP] running Ubuntu 13 . [SEP] B-Application [SEP] a","These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) . [SEP] B-Application [SEP] a [SEP] B-Version [SEP] running Ubuntu 13 ."
7,36,B-Version [SEP] Virtuoso 6 .,B-Extension [SEP] LTS (,72,"These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) .","These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) . [SEP] B-Version [SEP] Virtuoso 6 . [SEP] B-Extension [SEP] LTS (","These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) . [SEP] B-Extension [SEP] LTS ( [SEP] B-Version [SEP] Virtuoso 6 ."
7,30,B-Version [SEP] Virtuoso 6 .,B-OperatingSystem [SEP] and,72,"These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) .","These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) . [SEP] B-Version [SEP] Virtuoso 6 . [SEP] B-OperatingSystem [SEP] and","These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) . [SEP] B-OperatingSystem [SEP] and [SEP] B-Version [SEP] Virtuoso 6 ."
7,31,B-Version [SEP] Virtuoso 6 .,B-Version [SEP] running Ubuntu 13 .,72,"These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) .","These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) . [SEP] B-Version [SEP] Virtuoso 6 . [SEP] B-Version [SEP] running Ubuntu 13 .","These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) . [SEP] B-Version [SEP] running Ubuntu 13 . [SEP] B-Version [SEP] Virtuoso 6 ."
7,6,B-Version [SEP] Virtuoso 6 .,B-Application [SEP] a,72,"These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) .","These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) . [SEP] B-Version [SEP] Virtuoso 6 . [SEP] B-Application [SEP] a","These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) . [SEP] B-Application [SEP] a [SEP] B-Version [SEP] Virtuoso 6 ."
6,36,B-Application [SEP] a,B-Extension [SEP] LTS (,72,"These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) .","These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) . [SEP] B-Application [SEP] a [SEP] B-Extension [SEP] LTS (","These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) . [SEP] B-Extension [SEP] LTS ( [SEP] B-Application [SEP] a"
6,30,B-Application [SEP] a,B-OperatingSystem [SEP] and,72,"These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) .","These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) . [SEP] B-Application [SEP] a [SEP] B-OperatingSystem [SEP] and","These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) . [SEP] B-OperatingSystem [SEP] and [SEP] B-Application [SEP] a"
6,31,B-Application [SEP] a,B-Version [SEP] running Ubuntu 13 .,72,"These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) .","These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) . [SEP] B-Application [SEP] a [SEP] B-Version [SEP] running Ubuntu 13 .","These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) . [SEP] B-Version [SEP] running Ubuntu 13 . [SEP] B-Application [SEP] a"
6,7,B-Application [SEP] a,B-Version [SEP] Virtuoso 6 .,72,"These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) .","These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) . [SEP] B-Application [SEP] a [SEP] B-Version [SEP] Virtuoso 6 .","These queries have been executed on a Virtuoso 6 . 1 instance running on a virtual machine with an AMD Opteron Processor 62xx CPU , 8GB of DDR 3 RAM and running Ubuntu 13 . 04 LTS ( Raring Ringtail ) . [SEP] B-Version [SEP] Virtuoso 6 . [SEP] B-Application [SEP] a"
0,20,B-Application [SEP] ECC2comp,B-Application [SEP] of EColiCore,73,"ECC2comp , presented in [ 16 ] and illustrated in Fig [ 1 ] . , is a further reduction of EColiCore 2 derived by exploiting NetworkReducer [ 17 ] , i . e . , an algorithm able to automatically compress metabolic models by lumping linear chains of reactions in a single cumulative equation and by removing elements ( metabolites and reactions ) that are non essential to represent key metabolic functions referred to as “ protected functions ” .","ECC2comp , presented in [ 16 ] and illustrated in Fig [ 1 ] . , is a further reduction of EColiCore 2 derived by exploiting NetworkReducer [ 17 ] , i . e . , an algorithm able to automatically compress metabolic models by lumping linear chains of reactions in a single cumulative equation and by removing elements ( metabolites and reactions ) that are non essential to represent key metabolic functions referred to as “ protected functions ” . [SEP] B-Application [SEP] ECC2comp [SEP] B-Application [SEP] of EColiCore","ECC2comp , presented in [ 16 ] and illustrated in Fig [ 1 ] . , is a further reduction of EColiCore 2 derived by exploiting NetworkReducer [ 17 ] , i . e . , an algorithm able to automatically compress metabolic models by lumping linear chains of reactions in a single cumulative equation and by removing elements ( metabolites and reactions ) that are non essential to represent key metabolic functions referred to as “ protected functions ” . [SEP] B-Application [SEP] of EColiCore [SEP] B-Application [SEP] ECC2comp"
0,25,B-Application [SEP] ECC2comp,B-PlugIn [SEP] exploiting,73,"ECC2comp , presented in [ 16 ] and illustrated in Fig [ 1 ] . , is a further reduction of EColiCore 2 derived by exploiting NetworkReducer [ 17 ] , i . e . , an algorithm able to automatically compress metabolic models by lumping linear chains of reactions in a single cumulative equation and by removing elements ( metabolites and reactions ) that are non essential to represent key metabolic functions referred to as “ protected functions ” .","ECC2comp , presented in [ 16 ] and illustrated in Fig [ 1 ] . , is a further reduction of EColiCore 2 derived by exploiting NetworkReducer [ 17 ] , i . e . , an algorithm able to automatically compress metabolic models by lumping linear chains of reactions in a single cumulative equation and by removing elements ( metabolites and reactions ) that are non essential to represent key metabolic functions referred to as “ protected functions ” . [SEP] B-Application [SEP] ECC2comp [SEP] B-PlugIn [SEP] exploiting","ECC2comp , presented in [ 16 ] and illustrated in Fig [ 1 ] . , is a further reduction of EColiCore 2 derived by exploiting NetworkReducer [ 17 ] , i . e . , an algorithm able to automatically compress metabolic models by lumping linear chains of reactions in a single cumulative equation and by removing elements ( metabolites and reactions ) that are non essential to represent key metabolic functions referred to as “ protected functions ” . [SEP] B-PlugIn [SEP] exploiting [SEP] B-Application [SEP] ECC2comp"
0,26,B-Application [SEP] ECC2comp,B-Citation [SEP] NetworkReducer [ 17,73,"ECC2comp , presented in [ 16 ] and illustrated in Fig [ 1 ] . , is a further reduction of EColiCore 2 derived by exploiting NetworkReducer [ 17 ] , i . e . , an algorithm able to automatically compress metabolic models by lumping linear chains of reactions in a single cumulative equation and by removing elements ( metabolites and reactions ) that are non essential to represent key metabolic functions referred to as “ protected functions ” .","ECC2comp , presented in [ 16 ] and illustrated in Fig [ 1 ] . , is a further reduction of EColiCore 2 derived by exploiting NetworkReducer [ 17 ] , i . e . , an algorithm able to automatically compress metabolic models by lumping linear chains of reactions in a single cumulative equation and by removing elements ( metabolites and reactions ) that are non essential to represent key metabolic functions referred to as “ protected functions ” . [SEP] B-Application [SEP] ECC2comp [SEP] B-Citation [SEP] NetworkReducer [ 17","ECC2comp , presented in [ 16 ] and illustrated in Fig [ 1 ] . , is a further reduction of EColiCore 2 derived by exploiting NetworkReducer [ 17 ] , i . e . , an algorithm able to automatically compress metabolic models by lumping linear chains of reactions in a single cumulative equation and by removing elements ( metabolites and reactions ) that are non essential to represent key metabolic functions referred to as “ protected functions ” . [SEP] B-Citation [SEP] NetworkReducer [ 17 [SEP] B-Application [SEP] ECC2comp"
20,0,B-Application [SEP] of EColiCore,B-Application [SEP] ECC2comp,73,"ECC2comp , presented in [ 16 ] and illustrated in Fig [ 1 ] . , is a further reduction of EColiCore 2 derived by exploiting NetworkReducer [ 17 ] , i . e . , an algorithm able to automatically compress metabolic models by lumping linear chains of reactions in a single cumulative equation and by removing elements ( metabolites and reactions ) that are non essential to represent key metabolic functions referred to as “ protected functions ” .","ECC2comp , presented in [ 16 ] and illustrated in Fig [ 1 ] . , is a further reduction of EColiCore 2 derived by exploiting NetworkReducer [ 17 ] , i . e . , an algorithm able to automatically compress metabolic models by lumping linear chains of reactions in a single cumulative equation and by removing elements ( metabolites and reactions ) that are non essential to represent key metabolic functions referred to as “ protected functions ” . [SEP] B-Application [SEP] of EColiCore [SEP] B-Application [SEP] ECC2comp","ECC2comp , presented in [ 16 ] and illustrated in Fig [ 1 ] . , is a further reduction of EColiCore 2 derived by exploiting NetworkReducer [ 17 ] , i . e . , an algorithm able to automatically compress metabolic models by lumping linear chains of reactions in a single cumulative equation and by removing elements ( metabolites and reactions ) that are non essential to represent key metabolic functions referred to as “ protected functions ” . [SEP] B-Application [SEP] ECC2comp [SEP] B-Application [SEP] of EColiCore"
20,25,B-Application [SEP] of EColiCore,B-PlugIn [SEP] exploiting,73,"ECC2comp , presented in [ 16 ] and illustrated in Fig [ 1 ] . , is a further reduction of EColiCore 2 derived by exploiting NetworkReducer [ 17 ] , i . e . , an algorithm able to automatically compress metabolic models by lumping linear chains of reactions in a single cumulative equation and by removing elements ( metabolites and reactions ) that are non essential to represent key metabolic functions referred to as “ protected functions ” .","ECC2comp , presented in [ 16 ] and illustrated in Fig [ 1 ] . , is a further reduction of EColiCore 2 derived by exploiting NetworkReducer [ 17 ] , i . e . , an algorithm able to automatically compress metabolic models by lumping linear chains of reactions in a single cumulative equation and by removing elements ( metabolites and reactions ) that are non essential to represent key metabolic functions referred to as “ protected functions ” . [SEP] B-Application [SEP] of EColiCore [SEP] B-PlugIn [SEP] exploiting","ECC2comp , presented in [ 16 ] and illustrated in Fig [ 1 ] . , is a further reduction of EColiCore 2 derived by exploiting NetworkReducer [ 17 ] , i . e . , an algorithm able to automatically compress metabolic models by lumping linear chains of reactions in a single cumulative equation and by removing elements ( metabolites and reactions ) that are non essential to represent key metabolic functions referred to as “ protected functions ” . [SEP] B-PlugIn [SEP] exploiting [SEP] B-Application [SEP] of EColiCore"
20,26,B-Application [SEP] of EColiCore,B-Citation [SEP] NetworkReducer [ 17,73,"ECC2comp , presented in [ 16 ] and illustrated in Fig [ 1 ] . , is a further reduction of EColiCore 2 derived by exploiting NetworkReducer [ 17 ] , i . e . , an algorithm able to automatically compress metabolic models by lumping linear chains of reactions in a single cumulative equation and by removing elements ( metabolites and reactions ) that are non essential to represent key metabolic functions referred to as “ protected functions ” .","ECC2comp , presented in [ 16 ] and illustrated in Fig [ 1 ] . , is a further reduction of EColiCore 2 derived by exploiting NetworkReducer [ 17 ] , i . e . , an algorithm able to automatically compress metabolic models by lumping linear chains of reactions in a single cumulative equation and by removing elements ( metabolites and reactions ) that are non essential to represent key metabolic functions referred to as “ protected functions ” . [SEP] B-Application [SEP] of EColiCore [SEP] B-Citation [SEP] NetworkReducer [ 17","ECC2comp , presented in [ 16 ] and illustrated in Fig [ 1 ] . , is a further reduction of EColiCore 2 derived by exploiting NetworkReducer [ 17 ] , i . e . , an algorithm able to automatically compress metabolic models by lumping linear chains of reactions in a single cumulative equation and by removing elements ( metabolites and reactions ) that are non essential to represent key metabolic functions referred to as “ protected functions ” . [SEP] B-Citation [SEP] NetworkReducer [ 17 [SEP] B-Application [SEP] of EColiCore"
25,0,B-PlugIn [SEP] exploiting,B-Application [SEP] ECC2comp,73,"ECC2comp , presented in [ 16 ] and illustrated in Fig [ 1 ] . , is a further reduction of EColiCore 2 derived by exploiting NetworkReducer [ 17 ] , i . e . , an algorithm able to automatically compress metabolic models by lumping linear chains of reactions in a single cumulative equation and by removing elements ( metabolites and reactions ) that are non essential to represent key metabolic functions referred to as “ protected functions ” .","ECC2comp , presented in [ 16 ] and illustrated in Fig [ 1 ] . , is a further reduction of EColiCore 2 derived by exploiting NetworkReducer [ 17 ] , i . e . , an algorithm able to automatically compress metabolic models by lumping linear chains of reactions in a single cumulative equation and by removing elements ( metabolites and reactions ) that are non essential to represent key metabolic functions referred to as “ protected functions ” . [SEP] B-PlugIn [SEP] exploiting [SEP] B-Application [SEP] ECC2comp","ECC2comp , presented in [ 16 ] and illustrated in Fig [ 1 ] . , is a further reduction of EColiCore 2 derived by exploiting NetworkReducer [ 17 ] , i . e . , an algorithm able to automatically compress metabolic models by lumping linear chains of reactions in a single cumulative equation and by removing elements ( metabolites and reactions ) that are non essential to represent key metabolic functions referred to as “ protected functions ” . [SEP] B-Application [SEP] ECC2comp [SEP] B-PlugIn [SEP] exploiting"
25,20,B-PlugIn [SEP] exploiting,B-Application [SEP] of EColiCore,73,"ECC2comp , presented in [ 16 ] and illustrated in Fig [ 1 ] . , is a further reduction of EColiCore 2 derived by exploiting NetworkReducer [ 17 ] , i . e . , an algorithm able to automatically compress metabolic models by lumping linear chains of reactions in a single cumulative equation and by removing elements ( metabolites and reactions ) that are non essential to represent key metabolic functions referred to as “ protected functions ” .","ECC2comp , presented in [ 16 ] and illustrated in Fig [ 1 ] . , is a further reduction of EColiCore 2 derived by exploiting NetworkReducer [ 17 ] , i . e . , an algorithm able to automatically compress metabolic models by lumping linear chains of reactions in a single cumulative equation and by removing elements ( metabolites and reactions ) that are non essential to represent key metabolic functions referred to as “ protected functions ” . [SEP] B-PlugIn [SEP] exploiting [SEP] B-Application [SEP] of EColiCore","ECC2comp , presented in [ 16 ] and illustrated in Fig [ 1 ] . , is a further reduction of EColiCore 2 derived by exploiting NetworkReducer [ 17 ] , i . e . , an algorithm able to automatically compress metabolic models by lumping linear chains of reactions in a single cumulative equation and by removing elements ( metabolites and reactions ) that are non essential to represent key metabolic functions referred to as “ protected functions ” . [SEP] B-Application [SEP] of EColiCore [SEP] B-PlugIn [SEP] exploiting"
25,26,B-PlugIn [SEP] exploiting,B-Citation [SEP] NetworkReducer [ 17,73,"ECC2comp , presented in [ 16 ] and illustrated in Fig [ 1 ] . , is a further reduction of EColiCore 2 derived by exploiting NetworkReducer [ 17 ] , i . e . , an algorithm able to automatically compress metabolic models by lumping linear chains of reactions in a single cumulative equation and by removing elements ( metabolites and reactions ) that are non essential to represent key metabolic functions referred to as “ protected functions ” .","ECC2comp , presented in [ 16 ] and illustrated in Fig [ 1 ] . , is a further reduction of EColiCore 2 derived by exploiting NetworkReducer [ 17 ] , i . e . , an algorithm able to automatically compress metabolic models by lumping linear chains of reactions in a single cumulative equation and by removing elements ( metabolites and reactions ) that are non essential to represent key metabolic functions referred to as “ protected functions ” . [SEP] B-PlugIn [SEP] exploiting [SEP] B-Citation [SEP] NetworkReducer [ 17","ECC2comp , presented in [ 16 ] and illustrated in Fig [ 1 ] . , is a further reduction of EColiCore 2 derived by exploiting NetworkReducer [ 17 ] , i . e . , an algorithm able to automatically compress metabolic models by lumping linear chains of reactions in a single cumulative equation and by removing elements ( metabolites and reactions ) that are non essential to represent key metabolic functions referred to as “ protected functions ” . [SEP] B-Citation [SEP] NetworkReducer [ 17 [SEP] B-PlugIn [SEP] exploiting"
26,0,B-Citation [SEP] NetworkReducer [ 17,B-Application [SEP] ECC2comp,73,"ECC2comp , presented in [ 16 ] and illustrated in Fig [ 1 ] . , is a further reduction of EColiCore 2 derived by exploiting NetworkReducer [ 17 ] , i . e . , an algorithm able to automatically compress metabolic models by lumping linear chains of reactions in a single cumulative equation and by removing elements ( metabolites and reactions ) that are non essential to represent key metabolic functions referred to as “ protected functions ” .","ECC2comp , presented in [ 16 ] and illustrated in Fig [ 1 ] . , is a further reduction of EColiCore 2 derived by exploiting NetworkReducer [ 17 ] , i . e . , an algorithm able to automatically compress metabolic models by lumping linear chains of reactions in a single cumulative equation and by removing elements ( metabolites and reactions ) that are non essential to represent key metabolic functions referred to as “ protected functions ” . [SEP] B-Citation [SEP] NetworkReducer [ 17 [SEP] B-Application [SEP] ECC2comp","ECC2comp , presented in [ 16 ] and illustrated in Fig [ 1 ] . , is a further reduction of EColiCore 2 derived by exploiting NetworkReducer [ 17 ] , i . e . , an algorithm able to automatically compress metabolic models by lumping linear chains of reactions in a single cumulative equation and by removing elements ( metabolites and reactions ) that are non essential to represent key metabolic functions referred to as “ protected functions ” . [SEP] B-Application [SEP] ECC2comp [SEP] B-Citation [SEP] NetworkReducer [ 17"
26,20,B-Citation [SEP] NetworkReducer [ 17,B-Application [SEP] of EColiCore,73,"ECC2comp , presented in [ 16 ] and illustrated in Fig [ 1 ] . , is a further reduction of EColiCore 2 derived by exploiting NetworkReducer [ 17 ] , i . e . , an algorithm able to automatically compress metabolic models by lumping linear chains of reactions in a single cumulative equation and by removing elements ( metabolites and reactions ) that are non essential to represent key metabolic functions referred to as “ protected functions ” .","ECC2comp , presented in [ 16 ] and illustrated in Fig [ 1 ] . , is a further reduction of EColiCore 2 derived by exploiting NetworkReducer [ 17 ] , i . e . , an algorithm able to automatically compress metabolic models by lumping linear chains of reactions in a single cumulative equation and by removing elements ( metabolites and reactions ) that are non essential to represent key metabolic functions referred to as “ protected functions ” . [SEP] B-Citation [SEP] NetworkReducer [ 17 [SEP] B-Application [SEP] of EColiCore","ECC2comp , presented in [ 16 ] and illustrated in Fig [ 1 ] . , is a further reduction of EColiCore 2 derived by exploiting NetworkReducer [ 17 ] , i . e . , an algorithm able to automatically compress metabolic models by lumping linear chains of reactions in a single cumulative equation and by removing elements ( metabolites and reactions ) that are non essential to represent key metabolic functions referred to as “ protected functions ” . [SEP] B-Application [SEP] of EColiCore [SEP] B-Citation [SEP] NetworkReducer [ 17"
26,25,B-Citation [SEP] NetworkReducer [ 17,B-PlugIn [SEP] exploiting,73,"ECC2comp , presented in [ 16 ] and illustrated in Fig [ 1 ] . , is a further reduction of EColiCore 2 derived by exploiting NetworkReducer [ 17 ] , i . e . , an algorithm able to automatically compress metabolic models by lumping linear chains of reactions in a single cumulative equation and by removing elements ( metabolites and reactions ) that are non essential to represent key metabolic functions referred to as “ protected functions ” .","ECC2comp , presented in [ 16 ] and illustrated in Fig [ 1 ] . , is a further reduction of EColiCore 2 derived by exploiting NetworkReducer [ 17 ] , i . e . , an algorithm able to automatically compress metabolic models by lumping linear chains of reactions in a single cumulative equation and by removing elements ( metabolites and reactions ) that are non essential to represent key metabolic functions referred to as “ protected functions ” . [SEP] B-Citation [SEP] NetworkReducer [ 17 [SEP] B-PlugIn [SEP] exploiting","ECC2comp , presented in [ 16 ] and illustrated in Fig [ 1 ] . , is a further reduction of EColiCore 2 derived by exploiting NetworkReducer [ 17 ] , i . e . , an algorithm able to automatically compress metabolic models by lumping linear chains of reactions in a single cumulative equation and by removing elements ( metabolites and reactions ) that are non essential to represent key metabolic functions referred to as “ protected functions ” . [SEP] B-PlugIn [SEP] exploiting [SEP] B-Citation [SEP] NetworkReducer [ 17"
14,16,B-PlugIn [SEP] LSODA,B-AlternativeName [SEP] Livermore solver for ODEs with automatic method,74,The numerical integration of the ODEs system has been realized exploiting the software library LSODA ( Livermore solver for ODEs with automatic method ) [ 19 .,The numerical integration of the ODEs system has been realized exploiting the software library LSODA ( Livermore solver for ODEs with automatic method ) [ 19 . [SEP] B-PlugIn [SEP] LSODA [SEP] B-AlternativeName [SEP] Livermore solver for ODEs with automatic method,The numerical integration of the ODEs system has been realized exploiting the software library LSODA ( Livermore solver for ODEs with automatic method ) [ 19 . [SEP] B-AlternativeName [SEP] Livermore solver for ODEs with automatic method [SEP] B-PlugIn [SEP] LSODA
14,24,B-PlugIn [SEP] LSODA,B-Citation [SEP] [ 19 .,74,The numerical integration of the ODEs system has been realized exploiting the software library LSODA ( Livermore solver for ODEs with automatic method ) [ 19 .,The numerical integration of the ODEs system has been realized exploiting the software library LSODA ( Livermore solver for ODEs with automatic method ) [ 19 . [SEP] B-PlugIn [SEP] LSODA [SEP] B-Citation [SEP] [ 19 .,The numerical integration of the ODEs system has been realized exploiting the software library LSODA ( Livermore solver for ODEs with automatic method ) [ 19 . [SEP] B-Citation [SEP] [ 19 . [SEP] B-PlugIn [SEP] LSODA
16,14,B-AlternativeName [SEP] Livermore solver for ODEs with automatic method,B-PlugIn [SEP] LSODA,74,The numerical integration of the ODEs system has been realized exploiting the software library LSODA ( Livermore solver for ODEs with automatic method ) [ 19 .,The numerical integration of the ODEs system has been realized exploiting the software library LSODA ( Livermore solver for ODEs with automatic method ) [ 19 . [SEP] B-AlternativeName [SEP] Livermore solver for ODEs with automatic method [SEP] B-PlugIn [SEP] LSODA,The numerical integration of the ODEs system has been realized exploiting the software library LSODA ( Livermore solver for ODEs with automatic method ) [ 19 . [SEP] B-PlugIn [SEP] LSODA [SEP] B-AlternativeName [SEP] Livermore solver for ODEs with automatic method
16,24,B-AlternativeName [SEP] Livermore solver for ODEs with automatic method,B-Citation [SEP] [ 19 .,74,The numerical integration of the ODEs system has been realized exploiting the software library LSODA ( Livermore solver for ODEs with automatic method ) [ 19 .,The numerical integration of the ODEs system has been realized exploiting the software library LSODA ( Livermore solver for ODEs with automatic method ) [ 19 . [SEP] B-AlternativeName [SEP] Livermore solver for ODEs with automatic method [SEP] B-Citation [SEP] [ 19 .,The numerical integration of the ODEs system has been realized exploiting the software library LSODA ( Livermore solver for ODEs with automatic method ) [ 19 . [SEP] B-Citation [SEP] [ 19 . [SEP] B-AlternativeName [SEP] Livermore solver for ODEs with automatic method
24,14,B-Citation [SEP] [ 19 .,B-PlugIn [SEP] LSODA,74,The numerical integration of the ODEs system has been realized exploiting the software library LSODA ( Livermore solver for ODEs with automatic method ) [ 19 .,The numerical integration of the ODEs system has been realized exploiting the software library LSODA ( Livermore solver for ODEs with automatic method ) [ 19 . [SEP] B-Citation [SEP] [ 19 . [SEP] B-PlugIn [SEP] LSODA,The numerical integration of the ODEs system has been realized exploiting the software library LSODA ( Livermore solver for ODEs with automatic method ) [ 19 . [SEP] B-PlugIn [SEP] LSODA [SEP] B-Citation [SEP] [ 19 .
24,16,B-Citation [SEP] [ 19 .,B-AlternativeName [SEP] Livermore solver for ODEs with automatic method,74,The numerical integration of the ODEs system has been realized exploiting the software library LSODA ( Livermore solver for ODEs with automatic method ) [ 19 .,The numerical integration of the ODEs system has been realized exploiting the software library LSODA ( Livermore solver for ODEs with automatic method ) [ 19 . [SEP] B-Citation [SEP] [ 19 . [SEP] B-AlternativeName [SEP] Livermore solver for ODEs with automatic method,The numerical integration of the ODEs system has been realized exploiting the software library LSODA ( Livermore solver for ODEs with automatic method ) [ 19 . [SEP] B-AlternativeName [SEP] Livermore solver for ODEs with automatic method [SEP] B-Citation [SEP] [ 19 .
3,4,B-PlugIn [SEP] SciPy,B-Citation [SEP] [ 20 ],75,efficiently implemented in SciPy [ 20 ] .,efficiently implemented in SciPy [ 20 ] . [SEP] B-PlugIn [SEP] SciPy [SEP] B-Citation [SEP] [ 20 ],efficiently implemented in SciPy [ 20 ] . [SEP] B-Citation [SEP] [ 20 ] [SEP] B-PlugIn [SEP] SciPy
4,3,B-Citation [SEP] [ 20 ],B-PlugIn [SEP] SciPy,75,efficiently implemented in SciPy [ 20 ] .,efficiently implemented in SciPy [ 20 ] . [SEP] B-Citation [SEP] [ 20 ] [SEP] B-PlugIn [SEP] SciPy,efficiently implemented in SciPy [ 20 ] . [SEP] B-PlugIn [SEP] SciPy [SEP] B-Citation [SEP] [ 20 ]
6,5,B-Citation [SEP] [ 21 ],B-PlugIn [SEP] PyTables,76,"In particular here we exploited PyTables [ 21 ] , a package for managing hierarchical datasets designed to efficiently and easily cope with extremely large amounts of data .","In particular here we exploited PyTables [ 21 ] , a package for managing hierarchical datasets designed to efficiently and easily cope with extremely large amounts of data . [SEP] B-Citation [SEP] [ 21 ] [SEP] B-PlugIn [SEP] PyTables","In particular here we exploited PyTables [ 21 ] , a package for managing hierarchical datasets designed to efficiently and easily cope with extremely large amounts of data . [SEP] B-PlugIn [SEP] PyTables [SEP] B-Citation [SEP] [ 21 ]"
5,6,B-PlugIn [SEP] PyTables,B-Citation [SEP] [ 21 ],76,"In particular here we exploited PyTables [ 21 ] , a package for managing hierarchical datasets designed to efficiently and easily cope with extremely large amounts of data .","In particular here we exploited PyTables [ 21 ] , a package for managing hierarchical datasets designed to efficiently and easily cope with extremely large amounts of data . [SEP] B-PlugIn [SEP] PyTables [SEP] B-Citation [SEP] [ 21 ]","In particular here we exploited PyTables [ 21 ] , a package for managing hierarchical datasets designed to efficiently and easily cope with extremely large amounts of data . [SEP] B-Citation [SEP] [ 21 ] [SEP] B-PlugIn [SEP] PyTables"
25,28,B-Application [SEP] Jellyfish,B-Version [SEP] 2 . 2 . 3,77,"In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] .","In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] . [SEP] B-Application [SEP] Jellyfish [SEP] B-Version [SEP] 2 . 2 . 3","In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] . [SEP] B-Version [SEP] 2 . 2 . 3 [SEP] B-Application [SEP] Jellyfish"
25,34,B-Application [SEP] Jellyfish,B-Developer [SEP] Jellyfish,77,"In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] .","In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] . [SEP] B-Application [SEP] Jellyfish [SEP] B-Developer [SEP] Jellyfish","In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] . [SEP] B-Developer [SEP] Jellyfish [SEP] B-Application [SEP] Jellyfish"
25,36,B-Application [SEP] Jellyfish,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005491,77,"In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] .","In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] . [SEP] B-Application [SEP] Jellyfish [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005491","In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005491 [SEP] B-Application [SEP] Jellyfish"
25,38,B-Application [SEP] Jellyfish,B-Citation [SEP] [ 28 ],77,"In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] .","In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] . [SEP] B-Application [SEP] Jellyfish [SEP] B-Citation [SEP] [ 28 ]","In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] . [SEP] B-Citation [SEP] [ 28 ] [SEP] B-Application [SEP] Jellyfish"
28,25,B-Version [SEP] 2 . 2 . 3,B-Application [SEP] Jellyfish,77,"In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] .","In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] . [SEP] B-Version [SEP] 2 . 2 . 3 [SEP] B-Application [SEP] Jellyfish","In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] . [SEP] B-Application [SEP] Jellyfish [SEP] B-Version [SEP] 2 . 2 . 3"
28,34,B-Version [SEP] 2 . 2 . 3,B-Developer [SEP] Jellyfish,77,"In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] .","In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] . [SEP] B-Version [SEP] 2 . 2 . 3 [SEP] B-Developer [SEP] Jellyfish","In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] . [SEP] B-Developer [SEP] Jellyfish [SEP] B-Version [SEP] 2 . 2 . 3"
28,36,B-Version [SEP] 2 . 2 . 3,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005491,77,"In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] .","In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] . [SEP] B-Version [SEP] 2 . 2 . 3 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005491","In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005491 [SEP] B-Version [SEP] 2 . 2 . 3"
28,38,B-Version [SEP] 2 . 2 . 3,B-Citation [SEP] [ 28 ],77,"In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] .","In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] . [SEP] B-Version [SEP] 2 . 2 . 3 [SEP] B-Citation [SEP] [ 28 ]","In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] . [SEP] B-Citation [SEP] [ 28 ] [SEP] B-Version [SEP] 2 . 2 . 3"
34,25,B-Developer [SEP] Jellyfish,B-Application [SEP] Jellyfish,77,"In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] .","In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] . [SEP] B-Developer [SEP] Jellyfish [SEP] B-Application [SEP] Jellyfish","In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] . [SEP] B-Application [SEP] Jellyfish [SEP] B-Developer [SEP] Jellyfish"
34,28,B-Developer [SEP] Jellyfish,B-Version [SEP] 2 . 2 . 3,77,"In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] .","In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] . [SEP] B-Developer [SEP] Jellyfish [SEP] B-Version [SEP] 2 . 2 . 3","In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] . [SEP] B-Version [SEP] 2 . 2 . 3 [SEP] B-Developer [SEP] Jellyfish"
34,36,B-Developer [SEP] Jellyfish,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005491,77,"In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] .","In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] . [SEP] B-Developer [SEP] Jellyfish [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005491","In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005491 [SEP] B-Developer [SEP] Jellyfish"
34,38,B-Developer [SEP] Jellyfish,B-Citation [SEP] [ 28 ],77,"In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] .","In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] . [SEP] B-Developer [SEP] Jellyfish [SEP] B-Citation [SEP] [ 28 ]","In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] . [SEP] B-Citation [SEP] [ 28 ] [SEP] B-Developer [SEP] Jellyfish"
36,25,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005491,B-Application [SEP] Jellyfish,77,"In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] .","In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005491 [SEP] B-Application [SEP] Jellyfish","In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] . [SEP] B-Application [SEP] Jellyfish [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005491"
36,28,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005491,B-Version [SEP] 2 . 2 . 3,77,"In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] .","In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005491 [SEP] B-Version [SEP] 2 . 2 . 3","In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] . [SEP] B-Version [SEP] 2 . 2 . 3 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005491"
36,34,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005491,B-Developer [SEP] Jellyfish,77,"In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] .","In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005491 [SEP] B-Developer [SEP] Jellyfish","In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] . [SEP] B-Developer [SEP] Jellyfish [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005491"
36,38,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005491,B-Citation [SEP] [ 28 ],77,"In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] .","In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005491 [SEP] B-Citation [SEP] [ 28 ]","In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] . [SEP] B-Citation [SEP] [ 28 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005491"
38,25,B-Citation [SEP] [ 28 ],B-Application [SEP] Jellyfish,77,"In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] .","In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] . [SEP] B-Citation [SEP] [ 28 ] [SEP] B-Application [SEP] Jellyfish","In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] . [SEP] B-Application [SEP] Jellyfish [SEP] B-Citation [SEP] [ 28 ]"
38,28,B-Citation [SEP] [ 28 ],B-Version [SEP] 2 . 2 . 3,77,"In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] .","In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] . [SEP] B-Citation [SEP] [ 28 ] [SEP] B-Version [SEP] 2 . 2 . 3","In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] . [SEP] B-Version [SEP] 2 . 2 . 3 [SEP] B-Citation [SEP] [ 28 ]"
38,34,B-Citation [SEP] [ 28 ],B-Developer [SEP] Jellyfish,77,"In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] .","In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] . [SEP] B-Citation [SEP] [ 28 ] [SEP] B-Developer [SEP] Jellyfish","In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] . [SEP] B-Developer [SEP] Jellyfish [SEP] B-Citation [SEP] [ 28 ]"
38,36,B-Citation [SEP] [ 28 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005491,77,"In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] .","In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] . [SEP] B-Citation [SEP] [ 28 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005491","In addition , we also estimated the D . silvatica genome size from the distribution of k - mers ( from short reads ) with Jellyfish v . 2 . 2 . 3 ( Jellyfish , https://scicrunch.org/resolver/RRID:SCR_005491 ) [ 28 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005491 [SEP] B-Citation [SEP] [ 28 ]"
15,19,B-Application [SEP] GenomeScope,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017014,78,"The distribution of k - mers of size 17 , 21 , and 41 ( GenomeScope ( GenomeScope , https://scicrunch.org/resolver/RRID:SCR_017014 ) [ 29 ] ) resulted in a haploid genome size of ∼ 1 . 23 Gb ( Supplementary Fig . S1 ) .","The distribution of k - mers of size 17 , 21 , and 41 ( GenomeScope ( GenomeScope , https://scicrunch.org/resolver/RRID:SCR_017014 ) [ 29 ] ) resulted in a haploid genome size of ∼ 1 . 23 Gb ( Supplementary Fig . S1 ) . [SEP] B-Application [SEP] GenomeScope [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017014","The distribution of k - mers of size 17 , 21 , and 41 ( GenomeScope ( GenomeScope , https://scicrunch.org/resolver/RRID:SCR_017014 ) [ 29 ] ) resulted in a haploid genome size of ∼ 1 . 23 Gb ( Supplementary Fig . S1 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017014 [SEP] B-Application [SEP] GenomeScope"
15,21,B-Application [SEP] GenomeScope,B-Citation [SEP] [ 29 ],78,"The distribution of k - mers of size 17 , 21 , and 41 ( GenomeScope ( GenomeScope , https://scicrunch.org/resolver/RRID:SCR_017014 ) [ 29 ] ) resulted in a haploid genome size of ∼ 1 . 23 Gb ( Supplementary Fig . S1 ) .","The distribution of k - mers of size 17 , 21 , and 41 ( GenomeScope ( GenomeScope , https://scicrunch.org/resolver/RRID:SCR_017014 ) [ 29 ] ) resulted in a haploid genome size of ∼ 1 . 23 Gb ( Supplementary Fig . S1 ) . [SEP] B-Application [SEP] GenomeScope [SEP] B-Citation [SEP] [ 29 ]","The distribution of k - mers of size 17 , 21 , and 41 ( GenomeScope ( GenomeScope , https://scicrunch.org/resolver/RRID:SCR_017014 ) [ 29 ] ) resulted in a haploid genome size of ∼ 1 . 23 Gb ( Supplementary Fig . S1 ) . [SEP] B-Citation [SEP] [ 29 ] [SEP] B-Application [SEP] GenomeScope"
17,19,B-Application [SEP] GenomeScope,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017014,78,"The distribution of k - mers of size 17 , 21 , and 41 ( GenomeScope ( GenomeScope , https://scicrunch.org/resolver/RRID:SCR_017014 ) [ 29 ] ) resulted in a haploid genome size of ∼ 1 . 23 Gb ( Supplementary Fig . S1 ) .","The distribution of k - mers of size 17 , 21 , and 41 ( GenomeScope ( GenomeScope , https://scicrunch.org/resolver/RRID:SCR_017014 ) [ 29 ] ) resulted in a haploid genome size of ∼ 1 . 23 Gb ( Supplementary Fig . S1 ) . [SEP] B-Application [SEP] GenomeScope [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017014","The distribution of k - mers of size 17 , 21 , and 41 ( GenomeScope ( GenomeScope , https://scicrunch.org/resolver/RRID:SCR_017014 ) [ 29 ] ) resulted in a haploid genome size of ∼ 1 . 23 Gb ( Supplementary Fig . S1 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017014 [SEP] B-Application [SEP] GenomeScope"
17,21,B-Application [SEP] GenomeScope,B-Citation [SEP] [ 29 ],78,"The distribution of k - mers of size 17 , 21 , and 41 ( GenomeScope ( GenomeScope , https://scicrunch.org/resolver/RRID:SCR_017014 ) [ 29 ] ) resulted in a haploid genome size of ∼ 1 . 23 Gb ( Supplementary Fig . S1 ) .","The distribution of k - mers of size 17 , 21 , and 41 ( GenomeScope ( GenomeScope , https://scicrunch.org/resolver/RRID:SCR_017014 ) [ 29 ] ) resulted in a haploid genome size of ∼ 1 . 23 Gb ( Supplementary Fig . S1 ) . [SEP] B-Application [SEP] GenomeScope [SEP] B-Citation [SEP] [ 29 ]","The distribution of k - mers of size 17 , 21 , and 41 ( GenomeScope ( GenomeScope , https://scicrunch.org/resolver/RRID:SCR_017014 ) [ 29 ] ) resulted in a haploid genome size of ∼ 1 . 23 Gb ( Supplementary Fig . S1 ) . [SEP] B-Citation [SEP] [ 29 ] [SEP] B-Application [SEP] GenomeScope"
19,15,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017014,B-Application [SEP] GenomeScope,78,"The distribution of k - mers of size 17 , 21 , and 41 ( GenomeScope ( GenomeScope , https://scicrunch.org/resolver/RRID:SCR_017014 ) [ 29 ] ) resulted in a haploid genome size of ∼ 1 . 23 Gb ( Supplementary Fig . S1 ) .","The distribution of k - mers of size 17 , 21 , and 41 ( GenomeScope ( GenomeScope , https://scicrunch.org/resolver/RRID:SCR_017014 ) [ 29 ] ) resulted in a haploid genome size of ∼ 1 . 23 Gb ( Supplementary Fig . S1 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017014 [SEP] B-Application [SEP] GenomeScope","The distribution of k - mers of size 17 , 21 , and 41 ( GenomeScope ( GenomeScope , https://scicrunch.org/resolver/RRID:SCR_017014 ) [ 29 ] ) resulted in a haploid genome size of ∼ 1 . 23 Gb ( Supplementary Fig . S1 ) . [SEP] B-Application [SEP] GenomeScope [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017014"
19,17,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017014,B-Application [SEP] GenomeScope,78,"The distribution of k - mers of size 17 , 21 , and 41 ( GenomeScope ( GenomeScope , https://scicrunch.org/resolver/RRID:SCR_017014 ) [ 29 ] ) resulted in a haploid genome size of ∼ 1 . 23 Gb ( Supplementary Fig . S1 ) .","The distribution of k - mers of size 17 , 21 , and 41 ( GenomeScope ( GenomeScope , https://scicrunch.org/resolver/RRID:SCR_017014 ) [ 29 ] ) resulted in a haploid genome size of ∼ 1 . 23 Gb ( Supplementary Fig . S1 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017014 [SEP] B-Application [SEP] GenomeScope","The distribution of k - mers of size 17 , 21 , and 41 ( GenomeScope ( GenomeScope , https://scicrunch.org/resolver/RRID:SCR_017014 ) [ 29 ] ) resulted in a haploid genome size of ∼ 1 . 23 Gb ( Supplementary Fig . S1 ) . [SEP] B-Application [SEP] GenomeScope [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017014"
19,21,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017014,B-Citation [SEP] [ 29 ],78,"The distribution of k - mers of size 17 , 21 , and 41 ( GenomeScope ( GenomeScope , https://scicrunch.org/resolver/RRID:SCR_017014 ) [ 29 ] ) resulted in a haploid genome size of ∼ 1 . 23 Gb ( Supplementary Fig . S1 ) .","The distribution of k - mers of size 17 , 21 , and 41 ( GenomeScope ( GenomeScope , https://scicrunch.org/resolver/RRID:SCR_017014 ) [ 29 ] ) resulted in a haploid genome size of ∼ 1 . 23 Gb ( Supplementary Fig . S1 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017014 [SEP] B-Citation [SEP] [ 29 ]","The distribution of k - mers of size 17 , 21 , and 41 ( GenomeScope ( GenomeScope , https://scicrunch.org/resolver/RRID:SCR_017014 ) [ 29 ] ) resulted in a haploid genome size of ∼ 1 . 23 Gb ( Supplementary Fig . S1 ) . [SEP] B-Citation [SEP] [ 29 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017014"
21,15,B-Citation [SEP] [ 29 ],B-Application [SEP] GenomeScope,78,"The distribution of k - mers of size 17 , 21 , and 41 ( GenomeScope ( GenomeScope , https://scicrunch.org/resolver/RRID:SCR_017014 ) [ 29 ] ) resulted in a haploid genome size of ∼ 1 . 23 Gb ( Supplementary Fig . S1 ) .","The distribution of k - mers of size 17 , 21 , and 41 ( GenomeScope ( GenomeScope , https://scicrunch.org/resolver/RRID:SCR_017014 ) [ 29 ] ) resulted in a haploid genome size of ∼ 1 . 23 Gb ( Supplementary Fig . S1 ) . [SEP] B-Citation [SEP] [ 29 ] [SEP] B-Application [SEP] GenomeScope","The distribution of k - mers of size 17 , 21 , and 41 ( GenomeScope ( GenomeScope , https://scicrunch.org/resolver/RRID:SCR_017014 ) [ 29 ] ) resulted in a haploid genome size of ∼ 1 . 23 Gb ( Supplementary Fig . S1 ) . [SEP] B-Application [SEP] GenomeScope [SEP] B-Citation [SEP] [ 29 ]"
21,17,B-Citation [SEP] [ 29 ],B-Application [SEP] GenomeScope,78,"The distribution of k - mers of size 17 , 21 , and 41 ( GenomeScope ( GenomeScope , https://scicrunch.org/resolver/RRID:SCR_017014 ) [ 29 ] ) resulted in a haploid genome size of ∼ 1 . 23 Gb ( Supplementary Fig . S1 ) .","The distribution of k - mers of size 17 , 21 , and 41 ( GenomeScope ( GenomeScope , https://scicrunch.org/resolver/RRID:SCR_017014 ) [ 29 ] ) resulted in a haploid genome size of ∼ 1 . 23 Gb ( Supplementary Fig . S1 ) . [SEP] B-Citation [SEP] [ 29 ] [SEP] B-Application [SEP] GenomeScope","The distribution of k - mers of size 17 , 21 , and 41 ( GenomeScope ( GenomeScope , https://scicrunch.org/resolver/RRID:SCR_017014 ) [ 29 ] ) resulted in a haploid genome size of ∼ 1 . 23 Gb ( Supplementary Fig . S1 ) . [SEP] B-Application [SEP] GenomeScope [SEP] B-Citation [SEP] [ 29 ]"
21,19,B-Citation [SEP] [ 29 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017014,78,"The distribution of k - mers of size 17 , 21 , and 41 ( GenomeScope ( GenomeScope , https://scicrunch.org/resolver/RRID:SCR_017014 ) [ 29 ] ) resulted in a haploid genome size of ∼ 1 . 23 Gb ( Supplementary Fig . S1 ) .","The distribution of k - mers of size 17 , 21 , and 41 ( GenomeScope ( GenomeScope , https://scicrunch.org/resolver/RRID:SCR_017014 ) [ 29 ] ) resulted in a haploid genome size of ∼ 1 . 23 Gb ( Supplementary Fig . S1 ) . [SEP] B-Citation [SEP] [ 29 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017014","The distribution of k - mers of size 17 , 21 , and 41 ( GenomeScope ( GenomeScope , https://scicrunch.org/resolver/RRID:SCR_017014 ) [ 29 ] ) resulted in a haploid genome size of ∼ 1 . 23 Gb ( Supplementary Fig . S1 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017014 [SEP] B-Citation [SEP] [ 29 ]"
33,31,B-Citation [SEP] ) [ 31,"B-URL [SEP] ,",79,"We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) .","We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) . [SEP] B-Citation [SEP] ) [ 31 [SEP] B-URL [SEP] ,","We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) . [SEP] B-URL [SEP] , [SEP] B-Citation [SEP] ) [ 31"
33,29,B-Citation [SEP] ) [ 31,B-Developer [SEP] (,79,"We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) .","We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) . [SEP] B-Citation [SEP] ) [ 31 [SEP] B-Developer [SEP] (","We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) . [SEP] B-Developer [SEP] ( [SEP] B-Citation [SEP] ) [ 31"
33,23,B-Citation [SEP] ) [ 31,B-Version [SEP] v 2 . 4 .,79,"We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) .","We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) . [SEP] B-Citation [SEP] ) [ 31 [SEP] B-Version [SEP] v 2 . 4 .","We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) . [SEP] B-Version [SEP] v 2 . 4 . [SEP] B-Citation [SEP] ) [ 31"
33,21,B-Citation [SEP] ) [ 31,B-Application [SEP] used,79,"We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) .","We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) . [SEP] B-Citation [SEP] ) [ 31 [SEP] B-Application [SEP] used","We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) . [SEP] B-Application [SEP] used [SEP] B-Citation [SEP] ) [ 31"
31,33,"B-URL [SEP] ,",B-Citation [SEP] ) [ 31,79,"We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) .","We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) . [SEP] B-URL [SEP] , [SEP] B-Citation [SEP] ) [ 31","We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) . [SEP] B-Citation [SEP] ) [ 31 [SEP] B-URL [SEP] ,"
31,29,"B-URL [SEP] ,",B-Developer [SEP] (,79,"We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) .","We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) . [SEP] B-URL [SEP] , [SEP] B-Developer [SEP] (","We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) . [SEP] B-Developer [SEP] ( [SEP] B-URL [SEP] ,"
31,23,"B-URL [SEP] ,",B-Version [SEP] v 2 . 4 .,79,"We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) .","We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) . [SEP] B-URL [SEP] , [SEP] B-Version [SEP] v 2 . 4 .","We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) . [SEP] B-Version [SEP] v 2 . 4 . [SEP] B-URL [SEP] ,"
31,21,"B-URL [SEP] ,",B-Application [SEP] used,79,"We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) .","We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) . [SEP] B-URL [SEP] , [SEP] B-Application [SEP] used","We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) . [SEP] B-Application [SEP] used [SEP] B-URL [SEP] ,"
29,33,B-Developer [SEP] (,B-Citation [SEP] ) [ 31,79,"We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) .","We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) . [SEP] B-Developer [SEP] ( [SEP] B-Citation [SEP] ) [ 31","We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) . [SEP] B-Citation [SEP] ) [ 31 [SEP] B-Developer [SEP] ("
29,31,B-Developer [SEP] (,"B-URL [SEP] ,",79,"We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) .","We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) . [SEP] B-Developer [SEP] ( [SEP] B-URL [SEP] ,","We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) . [SEP] B-URL [SEP] , [SEP] B-Developer [SEP] ("
29,23,B-Developer [SEP] (,B-Version [SEP] v 2 . 4 .,79,"We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) .","We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) . [SEP] B-Developer [SEP] ( [SEP] B-Version [SEP] v 2 . 4 .","We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) . [SEP] B-Version [SEP] v 2 . 4 . [SEP] B-Developer [SEP] ("
29,21,B-Developer [SEP] (,B-Application [SEP] used,79,"We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) .","We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) . [SEP] B-Developer [SEP] ( [SEP] B-Application [SEP] used","We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) . [SEP] B-Application [SEP] used [SEP] B-Developer [SEP] ("
23,33,B-Version [SEP] v 2 . 4 .,B-Citation [SEP] ) [ 31,79,"We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) .","We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) . [SEP] B-Version [SEP] v 2 . 4 . [SEP] B-Citation [SEP] ) [ 31","We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) . [SEP] B-Citation [SEP] ) [ 31 [SEP] B-Version [SEP] v 2 . 4 ."
23,31,B-Version [SEP] v 2 . 4 .,"B-URL [SEP] ,",79,"We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) .","We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) . [SEP] B-Version [SEP] v 2 . 4 . [SEP] B-URL [SEP] ,","We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) . [SEP] B-URL [SEP] , [SEP] B-Version [SEP] v 2 . 4 ."
23,29,B-Version [SEP] v 2 . 4 .,B-Developer [SEP] (,79,"We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) .","We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) . [SEP] B-Version [SEP] v 2 . 4 . [SEP] B-Developer [SEP] (","We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) . [SEP] B-Developer [SEP] ( [SEP] B-Version [SEP] v 2 . 4 ."
23,21,B-Version [SEP] v 2 . 4 .,B-Application [SEP] used,79,"We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) .","We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) . [SEP] B-Version [SEP] v 2 . 4 . [SEP] B-Application [SEP] used","We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) . [SEP] B-Application [SEP] used [SEP] B-Version [SEP] v 2 . 4 ."
21,33,B-Application [SEP] used,B-Citation [SEP] ) [ 31,79,"We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) .","We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) . [SEP] B-Application [SEP] used [SEP] B-Citation [SEP] ) [ 31","We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) . [SEP] B-Citation [SEP] ) [ 31 [SEP] B-Application [SEP] used"
21,31,B-Application [SEP] used,"B-URL [SEP] ,",79,"We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) .","We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) . [SEP] B-Application [SEP] used [SEP] B-URL [SEP] ,","We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) . [SEP] B-URL [SEP] , [SEP] B-Application [SEP] used"
21,29,B-Application [SEP] used,B-Developer [SEP] (,79,"We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) .","We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) . [SEP] B-Application [SEP] used [SEP] B-Developer [SEP] (","We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) . [SEP] B-Developer [SEP] ( [SEP] B-Application [SEP] used"
21,23,B-Application [SEP] used,B-Version [SEP] v 2 . 4 .,79,"We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) .","We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) . [SEP] B-Application [SEP] used [SEP] B-Version [SEP] v 2 . 4 .","We downloaded all genomes of all these kinds available in the GenBank database ( Supplementary Table S1 - 3 ) and used BLASTN v 2 . 4 . 0 ( BLASTN , https://scicrunch.org/resolver/RRID:SCR_001598 ) [ 31 ] to detect and filter all contaminant reads ( E - value < 10 ; > 90 % alignment length ; > 90 % identity ) . [SEP] B-Version [SEP] v 2 . 4 . [SEP] B-Application [SEP] used"
5,8,B-Application [SEP] PRINSEQ,B-Version [SEP] 0 . 20 . 3,80,"We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] .","We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] . [SEP] B-Application [SEP] PRINSEQ [SEP] B-Version [SEP] 0 . 20 . 3","We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] . [SEP] B-Version [SEP] 0 . 20 . 3 [SEP] B-Application [SEP] PRINSEQ"
5,14,B-Application [SEP] PRINSEQ,B-Developer [SEP] PRINSEQ,80,"We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] .","We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] . [SEP] B-Application [SEP] PRINSEQ [SEP] B-Developer [SEP] PRINSEQ","We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] . [SEP] B-Developer [SEP] PRINSEQ [SEP] B-Application [SEP] PRINSEQ"
5,16,B-Application [SEP] PRINSEQ,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005454,80,"We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] .","We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] . [SEP] B-Application [SEP] PRINSEQ [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005454","We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005454 [SEP] B-Application [SEP] PRINSEQ"
5,18,B-Application [SEP] PRINSEQ,B-Citation [SEP] [ 32 ],80,"We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] .","We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] . [SEP] B-Application [SEP] PRINSEQ [SEP] B-Citation [SEP] [ 32 ]","We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] . [SEP] B-Citation [SEP] [ 32 ] [SEP] B-Application [SEP] PRINSEQ"
8,5,B-Version [SEP] 0 . 20 . 3,B-Application [SEP] PRINSEQ,80,"We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] .","We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] . [SEP] B-Version [SEP] 0 . 20 . 3 [SEP] B-Application [SEP] PRINSEQ","We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] . [SEP] B-Application [SEP] PRINSEQ [SEP] B-Version [SEP] 0 . 20 . 3"
8,14,B-Version [SEP] 0 . 20 . 3,B-Developer [SEP] PRINSEQ,80,"We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] .","We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] . [SEP] B-Version [SEP] 0 . 20 . 3 [SEP] B-Developer [SEP] PRINSEQ","We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] . [SEP] B-Developer [SEP] PRINSEQ [SEP] B-Version [SEP] 0 . 20 . 3"
8,16,B-Version [SEP] 0 . 20 . 3,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005454,80,"We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] .","We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] . [SEP] B-Version [SEP] 0 . 20 . 3 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005454","We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005454 [SEP] B-Version [SEP] 0 . 20 . 3"
8,18,B-Version [SEP] 0 . 20 . 3,B-Citation [SEP] [ 32 ],80,"We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] .","We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] . [SEP] B-Version [SEP] 0 . 20 . 3 [SEP] B-Citation [SEP] [ 32 ]","We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] . [SEP] B-Citation [SEP] [ 32 ] [SEP] B-Version [SEP] 0 . 20 . 3"
14,5,B-Developer [SEP] PRINSEQ,B-Application [SEP] PRINSEQ,80,"We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] .","We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] . [SEP] B-Developer [SEP] PRINSEQ [SEP] B-Application [SEP] PRINSEQ","We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] . [SEP] B-Application [SEP] PRINSEQ [SEP] B-Developer [SEP] PRINSEQ"
14,8,B-Developer [SEP] PRINSEQ,B-Version [SEP] 0 . 20 . 3,80,"We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] .","We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] . [SEP] B-Developer [SEP] PRINSEQ [SEP] B-Version [SEP] 0 . 20 . 3","We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] . [SEP] B-Version [SEP] 0 . 20 . 3 [SEP] B-Developer [SEP] PRINSEQ"
14,16,B-Developer [SEP] PRINSEQ,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005454,80,"We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] .","We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] . [SEP] B-Developer [SEP] PRINSEQ [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005454","We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005454 [SEP] B-Developer [SEP] PRINSEQ"
14,18,B-Developer [SEP] PRINSEQ,B-Citation [SEP] [ 32 ],80,"We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] .","We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] . [SEP] B-Developer [SEP] PRINSEQ [SEP] B-Citation [SEP] [ 32 ]","We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] . [SEP] B-Citation [SEP] [ 32 ] [SEP] B-Developer [SEP] PRINSEQ"
16,5,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005454,B-Application [SEP] PRINSEQ,80,"We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] .","We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005454 [SEP] B-Application [SEP] PRINSEQ","We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] . [SEP] B-Application [SEP] PRINSEQ [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005454"
16,8,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005454,B-Version [SEP] 0 . 20 . 3,80,"We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] .","We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005454 [SEP] B-Version [SEP] 0 . 20 . 3","We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] . [SEP] B-Version [SEP] 0 . 20 . 3 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005454"
16,14,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005454,B-Developer [SEP] PRINSEQ,80,"We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] .","We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005454 [SEP] B-Developer [SEP] PRINSEQ","We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] . [SEP] B-Developer [SEP] PRINSEQ [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005454"
16,18,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005454,B-Citation [SEP] [ 32 ],80,"We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] .","We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005454 [SEP] B-Citation [SEP] [ 32 ]","We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] . [SEP] B-Citation [SEP] [ 32 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005454"
18,5,B-Citation [SEP] [ 32 ],B-Application [SEP] PRINSEQ,80,"We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] .","We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] . [SEP] B-Citation [SEP] [ 32 ] [SEP] B-Application [SEP] PRINSEQ","We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] . [SEP] B-Application [SEP] PRINSEQ [SEP] B-Citation [SEP] [ 32 ]"
18,8,B-Citation [SEP] [ 32 ],B-Version [SEP] 0 . 20 . 3,80,"We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] .","We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] . [SEP] B-Citation [SEP] [ 32 ] [SEP] B-Version [SEP] 0 . 20 . 3","We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] . [SEP] B-Version [SEP] 0 . 20 . 3 [SEP] B-Citation [SEP] [ 32 ]"
18,14,B-Citation [SEP] [ 32 ],B-Developer [SEP] PRINSEQ,80,"We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] .","We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] . [SEP] B-Citation [SEP] [ 32 ] [SEP] B-Developer [SEP] PRINSEQ","We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] . [SEP] B-Developer [SEP] PRINSEQ [SEP] B-Citation [SEP] [ 32 ]"
18,16,B-Citation [SEP] [ 32 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005454,80,"We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] .","We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] . [SEP] B-Citation [SEP] [ 32 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005454","We preprocessed raw reads using PRINSEQ v . 0 . 20 . 3 ( PRINSEQ , https://scicrunch.org/resolver/RRID:SCR_005454 ) [ 32 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005454 [SEP] B-Citation [SEP] [ 32 ]"
19,17,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848,B-Developer [SEP] Trimmomatic,81,"For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows .","For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848 [SEP] B-Developer [SEP] Trimmomatic","For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows . [SEP] B-Developer [SEP] Trimmomatic [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848"
19,21,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848,B-Citation [SEP] [ 33 ],81,"For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows .","For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848 [SEP] B-Citation [SEP] [ 33 ]","For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows . [SEP] B-Citation [SEP] [ 33 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848"
19,11,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848,B-Application [SEP] Trimmomatic,81,"For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows .","For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848 [SEP] B-Application [SEP] Trimmomatic","For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows . [SEP] B-Application [SEP] Trimmomatic [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848"
19,13,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848,B-Version [SEP] 0 . 36,81,"For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows .","For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848 [SEP] B-Version [SEP] 0 . 36","For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows . [SEP] B-Version [SEP] 0 . 36 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848"
17,19,B-Developer [SEP] Trimmomatic,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848,81,"For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows .","For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows . [SEP] B-Developer [SEP] Trimmomatic [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848","For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848 [SEP] B-Developer [SEP] Trimmomatic"
17,21,B-Developer [SEP] Trimmomatic,B-Citation [SEP] [ 33 ],81,"For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows .","For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows . [SEP] B-Developer [SEP] Trimmomatic [SEP] B-Citation [SEP] [ 33 ]","For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows . [SEP] B-Citation [SEP] [ 33 ] [SEP] B-Developer [SEP] Trimmomatic"
17,11,B-Developer [SEP] Trimmomatic,B-Application [SEP] Trimmomatic,81,"For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows .","For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows . [SEP] B-Developer [SEP] Trimmomatic [SEP] B-Application [SEP] Trimmomatic","For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows . [SEP] B-Application [SEP] Trimmomatic [SEP] B-Developer [SEP] Trimmomatic"
17,13,B-Developer [SEP] Trimmomatic,B-Version [SEP] 0 . 36,81,"For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows .","For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows . [SEP] B-Developer [SEP] Trimmomatic [SEP] B-Version [SEP] 0 . 36","For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows . [SEP] B-Version [SEP] 0 . 36 [SEP] B-Developer [SEP] Trimmomatic"
21,19,B-Citation [SEP] [ 33 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848,81,"For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows .","For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows . [SEP] B-Citation [SEP] [ 33 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848","For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848 [SEP] B-Citation [SEP] [ 33 ]"
21,17,B-Citation [SEP] [ 33 ],B-Developer [SEP] Trimmomatic,81,"For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows .","For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows . [SEP] B-Citation [SEP] [ 33 ] [SEP] B-Developer [SEP] Trimmomatic","For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows . [SEP] B-Developer [SEP] Trimmomatic [SEP] B-Citation [SEP] [ 33 ]"
21,11,B-Citation [SEP] [ 33 ],B-Application [SEP] Trimmomatic,81,"For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows .","For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows . [SEP] B-Citation [SEP] [ 33 ] [SEP] B-Application [SEP] Trimmomatic","For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows . [SEP] B-Application [SEP] Trimmomatic [SEP] B-Citation [SEP] [ 33 ]"
21,13,B-Citation [SEP] [ 33 ],B-Version [SEP] 0 . 36,81,"For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows .","For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows . [SEP] B-Citation [SEP] [ 33 ] [SEP] B-Version [SEP] 0 . 36","For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows . [SEP] B-Version [SEP] 0 . 36 [SEP] B-Citation [SEP] [ 33 ]"
11,19,B-Application [SEP] Trimmomatic,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848,81,"For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows .","For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows . [SEP] B-Application [SEP] Trimmomatic [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848","For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848 [SEP] B-Application [SEP] Trimmomatic"
11,17,B-Application [SEP] Trimmomatic,B-Developer [SEP] Trimmomatic,81,"For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows .","For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows . [SEP] B-Application [SEP] Trimmomatic [SEP] B-Developer [SEP] Trimmomatic","For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows . [SEP] B-Developer [SEP] Trimmomatic [SEP] B-Application [SEP] Trimmomatic"
11,21,B-Application [SEP] Trimmomatic,B-Citation [SEP] [ 33 ],81,"For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows .","For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows . [SEP] B-Application [SEP] Trimmomatic [SEP] B-Citation [SEP] [ 33 ]","For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows . [SEP] B-Citation [SEP] [ 33 ] [SEP] B-Application [SEP] Trimmomatic"
11,13,B-Application [SEP] Trimmomatic,B-Version [SEP] 0 . 36,81,"For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows .","For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows . [SEP] B-Application [SEP] Trimmomatic [SEP] B-Version [SEP] 0 . 36","For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows . [SEP] B-Version [SEP] 0 . 36 [SEP] B-Application [SEP] Trimmomatic"
13,19,B-Version [SEP] 0 . 36,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848,81,"For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows .","For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows . [SEP] B-Version [SEP] 0 . 36 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848","For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848 [SEP] B-Version [SEP] 0 . 36"
13,17,B-Version [SEP] 0 . 36,B-Developer [SEP] Trimmomatic,81,"For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows .","For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows . [SEP] B-Version [SEP] 0 . 36 [SEP] B-Developer [SEP] Trimmomatic","For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows . [SEP] B-Developer [SEP] Trimmomatic [SEP] B-Version [SEP] 0 . 36"
13,21,B-Version [SEP] 0 . 36,B-Citation [SEP] [ 33 ],81,"For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows .","For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows . [SEP] B-Version [SEP] 0 . 36 [SEP] B-Citation [SEP] [ 33 ]","For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows . [SEP] B-Citation [SEP] [ 33 ] [SEP] B-Version [SEP] 0 . 36"
13,11,B-Version [SEP] 0 . 36,B-Application [SEP] Trimmomatic,81,"For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows .","For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows . [SEP] B-Version [SEP] 0 . 36 [SEP] B-Application [SEP] Trimmomatic","For the short - insert 100 PE library , we used Trimmomatic v 0 . 36 ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 33 ] with specific lists of adapters of the TruSeq v 3 libraries to filter all reads shorter than 36 bp or with minimum quality scores < 30 along 4 - bp sliding windows . [SEP] B-Application [SEP] Trimmomatic [SEP] B-Version [SEP] 0 . 36"
8,9,B-Application [SEP] NxTrim,B-Version [SEP] v 0 . 4 .,82,Long - insert MP libraries were preprocessed using NxTrim v 0 . 4 . 1 [ 34 ] with default parameters ( Supplementary Table S1 - 4a and b ) .,Long - insert MP libraries were preprocessed using NxTrim v 0 . 4 . 1 [ 34 ] with default parameters ( Supplementary Table S1 - 4a and b ) . [SEP] B-Application [SEP] NxTrim [SEP] B-Version [SEP] v 0 . 4 .,Long - insert MP libraries were preprocessed using NxTrim v 0 . 4 . 1 [ 34 ] with default parameters ( Supplementary Table S1 - 4a and b ) . [SEP] B-Version [SEP] v 0 . 4 . [SEP] B-Application [SEP] NxTrim
8,14,B-Application [SEP] NxTrim,B-Citation [SEP] 1 [ 34,82,Long - insert MP libraries were preprocessed using NxTrim v 0 . 4 . 1 [ 34 ] with default parameters ( Supplementary Table S1 - 4a and b ) .,Long - insert MP libraries were preprocessed using NxTrim v 0 . 4 . 1 [ 34 ] with default parameters ( Supplementary Table S1 - 4a and b ) . [SEP] B-Application [SEP] NxTrim [SEP] B-Citation [SEP] 1 [ 34,Long - insert MP libraries were preprocessed using NxTrim v 0 . 4 . 1 [ 34 ] with default parameters ( Supplementary Table S1 - 4a and b ) . [SEP] B-Citation [SEP] 1 [ 34 [SEP] B-Application [SEP] NxTrim
9,8,B-Version [SEP] v 0 . 4 .,B-Application [SEP] NxTrim,82,Long - insert MP libraries were preprocessed using NxTrim v 0 . 4 . 1 [ 34 ] with default parameters ( Supplementary Table S1 - 4a and b ) .,Long - insert MP libraries were preprocessed using NxTrim v 0 . 4 . 1 [ 34 ] with default parameters ( Supplementary Table S1 - 4a and b ) . [SEP] B-Version [SEP] v 0 . 4 . [SEP] B-Application [SEP] NxTrim,Long - insert MP libraries were preprocessed using NxTrim v 0 . 4 . 1 [ 34 ] with default parameters ( Supplementary Table S1 - 4a and b ) . [SEP] B-Application [SEP] NxTrim [SEP] B-Version [SEP] v 0 . 4 .
9,14,B-Version [SEP] v 0 . 4 .,B-Citation [SEP] 1 [ 34,82,Long - insert MP libraries were preprocessed using NxTrim v 0 . 4 . 1 [ 34 ] with default parameters ( Supplementary Table S1 - 4a and b ) .,Long - insert MP libraries were preprocessed using NxTrim v 0 . 4 . 1 [ 34 ] with default parameters ( Supplementary Table S1 - 4a and b ) . [SEP] B-Version [SEP] v 0 . 4 . [SEP] B-Citation [SEP] 1 [ 34,Long - insert MP libraries were preprocessed using NxTrim v 0 . 4 . 1 [ 34 ] with default parameters ( Supplementary Table S1 - 4a and b ) . [SEP] B-Citation [SEP] 1 [ 34 [SEP] B-Version [SEP] v 0 . 4 .
14,8,B-Citation [SEP] 1 [ 34,B-Application [SEP] NxTrim,82,Long - insert MP libraries were preprocessed using NxTrim v 0 . 4 . 1 [ 34 ] with default parameters ( Supplementary Table S1 - 4a and b ) .,Long - insert MP libraries were preprocessed using NxTrim v 0 . 4 . 1 [ 34 ] with default parameters ( Supplementary Table S1 - 4a and b ) . [SEP] B-Citation [SEP] 1 [ 34 [SEP] B-Application [SEP] NxTrim,Long - insert MP libraries were preprocessed using NxTrim v 0 . 4 . 1 [ 34 ] with default parameters ( Supplementary Table S1 - 4a and b ) . [SEP] B-Application [SEP] NxTrim [SEP] B-Citation [SEP] 1 [ 34
14,9,B-Citation [SEP] 1 [ 34,B-Version [SEP] v 0 . 4 .,82,Long - insert MP libraries were preprocessed using NxTrim v 0 . 4 . 1 [ 34 ] with default parameters ( Supplementary Table S1 - 4a and b ) .,Long - insert MP libraries were preprocessed using NxTrim v 0 . 4 . 1 [ 34 ] with default parameters ( Supplementary Table S1 - 4a and b ) . [SEP] B-Citation [SEP] 1 [ 34 [SEP] B-Version [SEP] v 0 . 4 .,Long - insert MP libraries were preprocessed using NxTrim v 0 . 4 . 1 [ 34 ] with default parameters ( Supplementary Table S1 - 4a and b ) . [SEP] B-Version [SEP] v 0 . 4 . [SEP] B-Citation [SEP] 1 [ 34
42,8,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731,B-Application [SEP] SMRT Analysis,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731 [SEP] B-Application [SEP] SMRT Analysis","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Application [SEP] SMRT Analysis [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731"
42,12,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731,B-Developer [SEP] SMRT Analysis Software,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731 [SEP] B-Developer [SEP] SMRT Analysis Software","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Developer [SEP] SMRT Analysis Software [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731"
42,16,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731"
42,18,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731,B-Citation [SEP] [ 35 ],83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731 [SEP] B-Citation [SEP] [ 35 ]","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Citation [SEP] [ 35 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731"
42,34,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731,B-Application [SEP] Pilon,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731 [SEP] B-Application [SEP] Pilon","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Application [SEP] Pilon [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731"
42,36,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731,B-Version [SEP] 1 . 22,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731 [SEP] B-Version [SEP] 1 . 22","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Version [SEP] 1 . 22 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731"
42,40,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731,B-Developer [SEP] Pilon,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731 [SEP] B-Developer [SEP] Pilon","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Developer [SEP] Pilon [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731"
42,44,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731,B-Citation [SEP] [ 36 ],83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731 [SEP] B-Citation [SEP] [ 36 ]","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731"
8,42,B-Application [SEP] SMRT Analysis,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Application [SEP] SMRT Analysis [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731 [SEP] B-Application [SEP] SMRT Analysis"
8,12,B-Application [SEP] SMRT Analysis,B-Developer [SEP] SMRT Analysis Software,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Application [SEP] SMRT Analysis [SEP] B-Developer [SEP] SMRT Analysis Software","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Developer [SEP] SMRT Analysis Software [SEP] B-Application [SEP] SMRT Analysis"
8,16,B-Application [SEP] SMRT Analysis,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Application [SEP] SMRT Analysis [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942 [SEP] B-Application [SEP] SMRT Analysis"
8,18,B-Application [SEP] SMRT Analysis,B-Citation [SEP] [ 35 ],83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Application [SEP] SMRT Analysis [SEP] B-Citation [SEP] [ 35 ]","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Citation [SEP] [ 35 ] [SEP] B-Application [SEP] SMRT Analysis"
8,34,B-Application [SEP] SMRT Analysis,B-Application [SEP] Pilon,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Application [SEP] SMRT Analysis [SEP] B-Application [SEP] Pilon","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Application [SEP] Pilon [SEP] B-Application [SEP] SMRT Analysis"
8,36,B-Application [SEP] SMRT Analysis,B-Version [SEP] 1 . 22,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Application [SEP] SMRT Analysis [SEP] B-Version [SEP] 1 . 22","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Version [SEP] 1 . 22 [SEP] B-Application [SEP] SMRT Analysis"
8,40,B-Application [SEP] SMRT Analysis,B-Developer [SEP] Pilon,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Application [SEP] SMRT Analysis [SEP] B-Developer [SEP] Pilon","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Developer [SEP] Pilon [SEP] B-Application [SEP] SMRT Analysis"
8,44,B-Application [SEP] SMRT Analysis,B-Citation [SEP] [ 36 ],83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Application [SEP] SMRT Analysis [SEP] B-Citation [SEP] [ 36 ]","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-Application [SEP] SMRT Analysis"
12,42,B-Developer [SEP] SMRT Analysis Software,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Developer [SEP] SMRT Analysis Software [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731 [SEP] B-Developer [SEP] SMRT Analysis Software"
12,8,B-Developer [SEP] SMRT Analysis Software,B-Application [SEP] SMRT Analysis,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Developer [SEP] SMRT Analysis Software [SEP] B-Application [SEP] SMRT Analysis","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Application [SEP] SMRT Analysis [SEP] B-Developer [SEP] SMRT Analysis Software"
12,16,B-Developer [SEP] SMRT Analysis Software,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Developer [SEP] SMRT Analysis Software [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942 [SEP] B-Developer [SEP] SMRT Analysis Software"
12,18,B-Developer [SEP] SMRT Analysis Software,B-Citation [SEP] [ 35 ],83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Developer [SEP] SMRT Analysis Software [SEP] B-Citation [SEP] [ 35 ]","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Citation [SEP] [ 35 ] [SEP] B-Developer [SEP] SMRT Analysis Software"
12,34,B-Developer [SEP] SMRT Analysis Software,B-Application [SEP] Pilon,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Developer [SEP] SMRT Analysis Software [SEP] B-Application [SEP] Pilon","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Application [SEP] Pilon [SEP] B-Developer [SEP] SMRT Analysis Software"
12,36,B-Developer [SEP] SMRT Analysis Software,B-Version [SEP] 1 . 22,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Developer [SEP] SMRT Analysis Software [SEP] B-Version [SEP] 1 . 22","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Version [SEP] 1 . 22 [SEP] B-Developer [SEP] SMRT Analysis Software"
12,40,B-Developer [SEP] SMRT Analysis Software,B-Developer [SEP] Pilon,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Developer [SEP] SMRT Analysis Software [SEP] B-Developer [SEP] Pilon","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Developer [SEP] Pilon [SEP] B-Developer [SEP] SMRT Analysis Software"
12,44,B-Developer [SEP] SMRT Analysis Software,B-Citation [SEP] [ 36 ],83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Developer [SEP] SMRT Analysis Software [SEP] B-Citation [SEP] [ 36 ]","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-Developer [SEP] SMRT Analysis Software"
16,42,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942"
16,8,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942,B-Application [SEP] SMRT Analysis,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942 [SEP] B-Application [SEP] SMRT Analysis","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Application [SEP] SMRT Analysis [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942"
16,12,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942,B-Developer [SEP] SMRT Analysis Software,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942 [SEP] B-Developer [SEP] SMRT Analysis Software","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Developer [SEP] SMRT Analysis Software [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942"
16,18,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942,B-Citation [SEP] [ 35 ],83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942 [SEP] B-Citation [SEP] [ 35 ]","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Citation [SEP] [ 35 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942"
16,34,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942,B-Application [SEP] Pilon,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942 [SEP] B-Application [SEP] Pilon","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Application [SEP] Pilon [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942"
16,36,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942,B-Version [SEP] 1 . 22,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942 [SEP] B-Version [SEP] 1 . 22","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Version [SEP] 1 . 22 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942"
16,40,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942,B-Developer [SEP] Pilon,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942 [SEP] B-Developer [SEP] Pilon","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Developer [SEP] Pilon [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942"
16,44,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942,B-Citation [SEP] [ 36 ],83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942 [SEP] B-Citation [SEP] [ 36 ]","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942"
18,42,B-Citation [SEP] [ 35 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Citation [SEP] [ 35 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731 [SEP] B-Citation [SEP] [ 35 ]"
18,8,B-Citation [SEP] [ 35 ],B-Application [SEP] SMRT Analysis,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Citation [SEP] [ 35 ] [SEP] B-Application [SEP] SMRT Analysis","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Application [SEP] SMRT Analysis [SEP] B-Citation [SEP] [ 35 ]"
18,12,B-Citation [SEP] [ 35 ],B-Developer [SEP] SMRT Analysis Software,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Citation [SEP] [ 35 ] [SEP] B-Developer [SEP] SMRT Analysis Software","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Developer [SEP] SMRT Analysis Software [SEP] B-Citation [SEP] [ 35 ]"
18,16,B-Citation [SEP] [ 35 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Citation [SEP] [ 35 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942 [SEP] B-Citation [SEP] [ 35 ]"
18,34,B-Citation [SEP] [ 35 ],B-Application [SEP] Pilon,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Citation [SEP] [ 35 ] [SEP] B-Application [SEP] Pilon","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Application [SEP] Pilon [SEP] B-Citation [SEP] [ 35 ]"
18,36,B-Citation [SEP] [ 35 ],B-Version [SEP] 1 . 22,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Citation [SEP] [ 35 ] [SEP] B-Version [SEP] 1 . 22","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Version [SEP] 1 . 22 [SEP] B-Citation [SEP] [ 35 ]"
18,40,B-Citation [SEP] [ 35 ],B-Developer [SEP] Pilon,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Citation [SEP] [ 35 ] [SEP] B-Developer [SEP] Pilon","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Developer [SEP] Pilon [SEP] B-Citation [SEP] [ 35 ]"
18,44,B-Citation [SEP] [ 35 ],B-Citation [SEP] [ 36 ],83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Citation [SEP] [ 35 ] [SEP] B-Citation [SEP] [ 36 ]","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-Citation [SEP] [ 35 ]"
34,42,B-Application [SEP] Pilon,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Application [SEP] Pilon [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731 [SEP] B-Application [SEP] Pilon"
34,8,B-Application [SEP] Pilon,B-Application [SEP] SMRT Analysis,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Application [SEP] Pilon [SEP] B-Application [SEP] SMRT Analysis","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Application [SEP] SMRT Analysis [SEP] B-Application [SEP] Pilon"
34,12,B-Application [SEP] Pilon,B-Developer [SEP] SMRT Analysis Software,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Application [SEP] Pilon [SEP] B-Developer [SEP] SMRT Analysis Software","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Developer [SEP] SMRT Analysis Software [SEP] B-Application [SEP] Pilon"
34,16,B-Application [SEP] Pilon,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Application [SEP] Pilon [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942 [SEP] B-Application [SEP] Pilon"
34,18,B-Application [SEP] Pilon,B-Citation [SEP] [ 35 ],83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Application [SEP] Pilon [SEP] B-Citation [SEP] [ 35 ]","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Citation [SEP] [ 35 ] [SEP] B-Application [SEP] Pilon"
34,36,B-Application [SEP] Pilon,B-Version [SEP] 1 . 22,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Application [SEP] Pilon [SEP] B-Version [SEP] 1 . 22","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Version [SEP] 1 . 22 [SEP] B-Application [SEP] Pilon"
34,40,B-Application [SEP] Pilon,B-Developer [SEP] Pilon,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Application [SEP] Pilon [SEP] B-Developer [SEP] Pilon","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Developer [SEP] Pilon [SEP] B-Application [SEP] Pilon"
34,44,B-Application [SEP] Pilon,B-Citation [SEP] [ 36 ],83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Application [SEP] Pilon [SEP] B-Citation [SEP] [ 36 ]","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-Application [SEP] Pilon"
36,42,B-Version [SEP] 1 . 22,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Version [SEP] 1 . 22 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731 [SEP] B-Version [SEP] 1 . 22"
36,8,B-Version [SEP] 1 . 22,B-Application [SEP] SMRT Analysis,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Version [SEP] 1 . 22 [SEP] B-Application [SEP] SMRT Analysis","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Application [SEP] SMRT Analysis [SEP] B-Version [SEP] 1 . 22"
36,12,B-Version [SEP] 1 . 22,B-Developer [SEP] SMRT Analysis Software,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Version [SEP] 1 . 22 [SEP] B-Developer [SEP] SMRT Analysis Software","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Developer [SEP] SMRT Analysis Software [SEP] B-Version [SEP] 1 . 22"
36,16,B-Version [SEP] 1 . 22,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Version [SEP] 1 . 22 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942 [SEP] B-Version [SEP] 1 . 22"
36,18,B-Version [SEP] 1 . 22,B-Citation [SEP] [ 35 ],83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Version [SEP] 1 . 22 [SEP] B-Citation [SEP] [ 35 ]","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Citation [SEP] [ 35 ] [SEP] B-Version [SEP] 1 . 22"
36,34,B-Version [SEP] 1 . 22,B-Application [SEP] Pilon,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Version [SEP] 1 . 22 [SEP] B-Application [SEP] Pilon","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Application [SEP] Pilon [SEP] B-Version [SEP] 1 . 22"
36,40,B-Version [SEP] 1 . 22,B-Developer [SEP] Pilon,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Version [SEP] 1 . 22 [SEP] B-Developer [SEP] Pilon","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Developer [SEP] Pilon [SEP] B-Version [SEP] 1 . 22"
36,44,B-Version [SEP] 1 . 22,B-Citation [SEP] [ 36 ],83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Version [SEP] 1 . 22 [SEP] B-Citation [SEP] [ 36 ]","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-Version [SEP] 1 . 22"
40,42,B-Developer [SEP] Pilon,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Developer [SEP] Pilon [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731 [SEP] B-Developer [SEP] Pilon"
40,8,B-Developer [SEP] Pilon,B-Application [SEP] SMRT Analysis,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Developer [SEP] Pilon [SEP] B-Application [SEP] SMRT Analysis","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Application [SEP] SMRT Analysis [SEP] B-Developer [SEP] Pilon"
40,12,B-Developer [SEP] Pilon,B-Developer [SEP] SMRT Analysis Software,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Developer [SEP] Pilon [SEP] B-Developer [SEP] SMRT Analysis Software","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Developer [SEP] SMRT Analysis Software [SEP] B-Developer [SEP] Pilon"
40,16,B-Developer [SEP] Pilon,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Developer [SEP] Pilon [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942 [SEP] B-Developer [SEP] Pilon"
40,18,B-Developer [SEP] Pilon,B-Citation [SEP] [ 35 ],83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Developer [SEP] Pilon [SEP] B-Citation [SEP] [ 35 ]","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Citation [SEP] [ 35 ] [SEP] B-Developer [SEP] Pilon"
40,34,B-Developer [SEP] Pilon,B-Application [SEP] Pilon,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Developer [SEP] Pilon [SEP] B-Application [SEP] Pilon","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Application [SEP] Pilon [SEP] B-Developer [SEP] Pilon"
40,36,B-Developer [SEP] Pilon,B-Version [SEP] 1 . 22,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Developer [SEP] Pilon [SEP] B-Version [SEP] 1 . 22","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Version [SEP] 1 . 22 [SEP] B-Developer [SEP] Pilon"
40,44,B-Developer [SEP] Pilon,B-Citation [SEP] [ 36 ],83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Developer [SEP] Pilon [SEP] B-Citation [SEP] [ 36 ]","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-Developer [SEP] Pilon"
44,42,B-Citation [SEP] [ 36 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014731 [SEP] B-Citation [SEP] [ 36 ]"
44,8,B-Citation [SEP] [ 36 ],B-Application [SEP] SMRT Analysis,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-Application [SEP] SMRT Analysis","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Application [SEP] SMRT Analysis [SEP] B-Citation [SEP] [ 36 ]"
44,12,B-Citation [SEP] [ 36 ],B-Developer [SEP] SMRT Analysis Software,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-Developer [SEP] SMRT Analysis Software","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Developer [SEP] SMRT Analysis Software [SEP] B-Citation [SEP] [ 36 ]"
44,16,B-Citation [SEP] [ 36 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002942 [SEP] B-Citation [SEP] [ 36 ]"
44,18,B-Citation [SEP] [ 36 ],B-Citation [SEP] [ 35 ],83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-Citation [SEP] [ 35 ]","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Citation [SEP] [ 35 ] [SEP] B-Citation [SEP] [ 36 ]"
44,34,B-Citation [SEP] [ 36 ],B-Application [SEP] Pilon,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-Application [SEP] Pilon","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Application [SEP] Pilon [SEP] B-Citation [SEP] [ 36 ]"
44,36,B-Citation [SEP] [ 36 ],B-Version [SEP] 1 . 22,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-Version [SEP] 1 . 22","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Version [SEP] 1 . 22 [SEP] B-Citation [SEP] [ 36 ]"
44,40,B-Citation [SEP] [ 36 ],B-Developer [SEP] Pilon,83,"We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) .","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-Developer [SEP] Pilon","We preprocessed the raw PacBio reads using the SMRT Analysis Software ( SMRT Analysis Software , https://scicrunch.org/resolver/RRID:SCR_002942 ) [ 35 ] , by generating circularized consensus sequence to further perform a polishing analysis with Pilon v 1 . 22 ( Pilon , https://scicrunch.org/resolver/RRID:SCR_014731 ) [ 36 ] based on short reads ( Supplementary Table S1 - 4c ) . [SEP] B-Developer [SEP] Pilon [SEP] B-Citation [SEP] [ 36 ]"
14,12,B-Citation [SEP] [ 37 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010691,84,"We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) .","We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) . [SEP] B-Citation [SEP] [ 37 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010691","We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010691 [SEP] B-Citation [SEP] [ 37 ]"
14,10,B-Citation [SEP] [ 37 ],B-Developer [SEP] MaSuRCA,84,"We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) .","We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) . [SEP] B-Citation [SEP] [ 37 ] [SEP] B-Developer [SEP] MaSuRCA","We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) . [SEP] B-Developer [SEP] MaSuRCA [SEP] B-Citation [SEP] [ 37 ]"
14,4,B-Citation [SEP] [ 37 ],B-Version [SEP] 3 . 2 . 9,84,"We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) .","We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) . [SEP] B-Citation [SEP] [ 37 ] [SEP] B-Version [SEP] 3 . 2 . 9","We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) . [SEP] B-Version [SEP] 3 . 2 . 9 [SEP] B-Citation [SEP] [ 37 ]"
14,2,B-Citation [SEP] [ 37 ],B-Application [SEP] MaSuRCA,84,"We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) .","We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) . [SEP] B-Citation [SEP] [ 37 ] [SEP] B-Application [SEP] MaSuRCA","We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) . [SEP] B-Application [SEP] MaSuRCA [SEP] B-Citation [SEP] [ 37 ]"
12,14,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010691,B-Citation [SEP] [ 37 ],84,"We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) .","We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010691 [SEP] B-Citation [SEP] [ 37 ]","We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) . [SEP] B-Citation [SEP] [ 37 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010691"
12,10,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010691,B-Developer [SEP] MaSuRCA,84,"We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) .","We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010691 [SEP] B-Developer [SEP] MaSuRCA","We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) . [SEP] B-Developer [SEP] MaSuRCA [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010691"
12,4,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010691,B-Version [SEP] 3 . 2 . 9,84,"We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) .","We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010691 [SEP] B-Version [SEP] 3 . 2 . 9","We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) . [SEP] B-Version [SEP] 3 . 2 . 9 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010691"
12,2,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010691,B-Application [SEP] MaSuRCA,84,"We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) .","We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010691 [SEP] B-Application [SEP] MaSuRCA","We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) . [SEP] B-Application [SEP] MaSuRCA [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010691"
10,14,B-Developer [SEP] MaSuRCA,B-Citation [SEP] [ 37 ],84,"We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) .","We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) . [SEP] B-Developer [SEP] MaSuRCA [SEP] B-Citation [SEP] [ 37 ]","We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) . [SEP] B-Citation [SEP] [ 37 ] [SEP] B-Developer [SEP] MaSuRCA"
10,12,B-Developer [SEP] MaSuRCA,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010691,84,"We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) .","We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) . [SEP] B-Developer [SEP] MaSuRCA [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010691","We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010691 [SEP] B-Developer [SEP] MaSuRCA"
10,4,B-Developer [SEP] MaSuRCA,B-Version [SEP] 3 . 2 . 9,84,"We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) .","We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) . [SEP] B-Developer [SEP] MaSuRCA [SEP] B-Version [SEP] 3 . 2 . 9","We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) . [SEP] B-Version [SEP] 3 . 2 . 9 [SEP] B-Developer [SEP] MaSuRCA"
10,2,B-Developer [SEP] MaSuRCA,B-Application [SEP] MaSuRCA,84,"We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) .","We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) . [SEP] B-Developer [SEP] MaSuRCA [SEP] B-Application [SEP] MaSuRCA","We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) . [SEP] B-Application [SEP] MaSuRCA [SEP] B-Developer [SEP] MaSuRCA"
4,14,B-Version [SEP] 3 . 2 . 9,B-Citation [SEP] [ 37 ],84,"We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) .","We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) . [SEP] B-Version [SEP] 3 . 2 . 9 [SEP] B-Citation [SEP] [ 37 ]","We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) . [SEP] B-Citation [SEP] [ 37 ] [SEP] B-Version [SEP] 3 . 2 . 9"
4,12,B-Version [SEP] 3 . 2 . 9,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010691,84,"We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) .","We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) . [SEP] B-Version [SEP] 3 . 2 . 9 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010691","We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010691 [SEP] B-Version [SEP] 3 . 2 . 9"
4,10,B-Version [SEP] 3 . 2 . 9,B-Developer [SEP] MaSuRCA,84,"We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) .","We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) . [SEP] B-Version [SEP] 3 . 2 . 9 [SEP] B-Developer [SEP] MaSuRCA","We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) . [SEP] B-Developer [SEP] MaSuRCA [SEP] B-Version [SEP] 3 . 2 . 9"
4,2,B-Version [SEP] 3 . 2 . 9,B-Application [SEP] MaSuRCA,84,"We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) .","We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) . [SEP] B-Version [SEP] 3 . 2 . 9 [SEP] B-Application [SEP] MaSuRCA","We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) . [SEP] B-Application [SEP] MaSuRCA [SEP] B-Version [SEP] 3 . 2 . 9"
2,14,B-Application [SEP] MaSuRCA,B-Citation [SEP] [ 37 ],84,"We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) .","We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) . [SEP] B-Application [SEP] MaSuRCA [SEP] B-Citation [SEP] [ 37 ]","We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) . [SEP] B-Citation [SEP] [ 37 ] [SEP] B-Application [SEP] MaSuRCA"
2,12,B-Application [SEP] MaSuRCA,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010691,84,"We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) .","We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) . [SEP] B-Application [SEP] MaSuRCA [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010691","We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010691 [SEP] B-Application [SEP] MaSuRCA"
2,10,B-Application [SEP] MaSuRCA,B-Developer [SEP] MaSuRCA,84,"We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) .","We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) . [SEP] B-Application [SEP] MaSuRCA [SEP] B-Developer [SEP] MaSuRCA","We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) . [SEP] B-Developer [SEP] MaSuRCA [SEP] B-Application [SEP] MaSuRCA"
2,4,B-Application [SEP] MaSuRCA,B-Version [SEP] 3 . 2 . 9,84,"We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) .","We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) . [SEP] B-Application [SEP] MaSuRCA [SEP] B-Version [SEP] 3 . 2 . 9","We used MaSuRCA v 3 . 2 . 9 ( MaSuRCA , https://scicrunch.org/resolver/RRID:SCR_010691 ) [ 37 ] for a hybrid de novo assembly of the D . silvatica genome ( Supplementary Fig . S2 ) . [SEP] B-Version [SEP] 3 . 2 . 9 [SEP] B-Application [SEP] MaSuRCA"
8,22,B-Application [SEP] AGOUTI,B-Citation [SEP] [ 38 ],85,"Additionally , we performed a scaffolding phase using AGOUTI ( minimum number of joining reads pairs support , k = 3 ) [ 38 ] , and the raw reads from a D . silvatica RNA sequencing ( RNAseq ) experiment [ 39 ] ( Supplementary Table S1 - 5 and S1 - 6 ) .","Additionally , we performed a scaffolding phase using AGOUTI ( minimum number of joining reads pairs support , k = 3 ) [ 38 ] , and the raw reads from a D . silvatica RNA sequencing ( RNAseq ) experiment [ 39 ] ( Supplementary Table S1 - 5 and S1 - 6 ) . [SEP] B-Application [SEP] AGOUTI [SEP] B-Citation [SEP] [ 38 ]","Additionally , we performed a scaffolding phase using AGOUTI ( minimum number of joining reads pairs support , k = 3 ) [ 38 ] , and the raw reads from a D . silvatica RNA sequencing ( RNAseq ) experiment [ 39 ] ( Supplementary Table S1 - 5 and S1 - 6 ) . [SEP] B-Citation [SEP] [ 38 ] [SEP] B-Application [SEP] AGOUTI"
22,8,B-Citation [SEP] [ 38 ],B-Application [SEP] AGOUTI,85,"Additionally , we performed a scaffolding phase using AGOUTI ( minimum number of joining reads pairs support , k = 3 ) [ 38 ] , and the raw reads from a D . silvatica RNA sequencing ( RNAseq ) experiment [ 39 ] ( Supplementary Table S1 - 5 and S1 - 6 ) .","Additionally , we performed a scaffolding phase using AGOUTI ( minimum number of joining reads pairs support , k = 3 ) [ 38 ] , and the raw reads from a D . silvatica RNA sequencing ( RNAseq ) experiment [ 39 ] ( Supplementary Table S1 - 5 and S1 - 6 ) . [SEP] B-Citation [SEP] [ 38 ] [SEP] B-Application [SEP] AGOUTI","Additionally , we performed a scaffolding phase using AGOUTI ( minimum number of joining reads pairs support , k = 3 ) [ 38 ] , and the raw reads from a D . silvatica RNA sequencing ( RNAseq ) experiment [ 39 ] ( Supplementary Table S1 - 5 and S1 - 6 ) . [SEP] B-Application [SEP] AGOUTI [SEP] B-Citation [SEP] [ 38 ]"
7,9,B-Application [SEP] BUSCO,B-Version [SEP] 3,86,"Particularly , we used 5 datasets , BUSCO v 3 ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) with genome option [ 40 ] using ( i ) the Arthropoda or ( ii ) the Metazoa dataset , ( iii ) the 457 core eukaryotic genes ( CEGs ) of Drosophila melanogaster [ 41 ] , ( iv ) the 58 , 966 transcripts in the D . silvatica transcriptome [ 39 ] , and ( v ) the 9 , 473 1:1orthologsacross5Dysderaspecies , D . silvatica ; D . gomerensis Strand , 1911 ; D . verneaui Simon , 1883 ; D . tilosensis Wunderlich , 1992 ; and D . bandamae Schmidt , 1973 obtained from the comparative transcriptomics analysis of these species [ 42 ] .","Particularly , we used 5 datasets , BUSCO v 3 ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) with genome option [ 40 ] using ( i ) the Arthropoda or ( ii ) the Metazoa dataset , ( iii ) the 457 core eukaryotic genes ( CEGs ) of Drosophila melanogaster [ 41 ] , ( iv ) the 58 , 966 transcripts in the D . silvatica transcriptome [ 39 ] , and ( v ) the 9 , 473 1:1orthologsacross5Dysderaspecies , D . silvatica ; D . gomerensis Strand , 1911 ; D . verneaui Simon , 1883 ; D . tilosensis Wunderlich , 1992 ; and D . bandamae Schmidt , 1973 obtained from the comparative transcriptomics analysis of these species [ 42 ] . [SEP] B-Application [SEP] BUSCO [SEP] B-Version [SEP] 3","Particularly , we used 5 datasets , BUSCO v 3 ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) with genome option [ 40 ] using ( i ) the Arthropoda or ( ii ) the Metazoa dataset , ( iii ) the 457 core eukaryotic genes ( CEGs ) of Drosophila melanogaster [ 41 ] , ( iv ) the 58 , 966 transcripts in the D . silvatica transcriptome [ 39 ] , and ( v ) the 9 , 473 1:1orthologsacross5Dysderaspecies , D . silvatica ; D . gomerensis Strand , 1911 ; D . verneaui Simon , 1883 ; D . tilosensis Wunderlich , 1992 ; and D . bandamae Schmidt , 1973 obtained from the comparative transcriptomics analysis of these species [ 42 ] . [SEP] B-Version [SEP] 3 [SEP] B-Application [SEP] BUSCO"
7,13,B-Application [SEP] BUSCO,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008,86,"Particularly , we used 5 datasets , BUSCO v 3 ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) with genome option [ 40 ] using ( i ) the Arthropoda or ( ii ) the Metazoa dataset , ( iii ) the 457 core eukaryotic genes ( CEGs ) of Drosophila melanogaster [ 41 ] , ( iv ) the 58 , 966 transcripts in the D . silvatica transcriptome [ 39 ] , and ( v ) the 9 , 473 1:1orthologsacross5Dysderaspecies , D . silvatica ; D . gomerensis Strand , 1911 ; D . verneaui Simon , 1883 ; D . tilosensis Wunderlich , 1992 ; and D . bandamae Schmidt , 1973 obtained from the comparative transcriptomics analysis of these species [ 42 ] .","Particularly , we used 5 datasets , BUSCO v 3 ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) with genome option [ 40 ] using ( i ) the Arthropoda or ( ii ) the Metazoa dataset , ( iii ) the 457 core eukaryotic genes ( CEGs ) of Drosophila melanogaster [ 41 ] , ( iv ) the 58 , 966 transcripts in the D . silvatica transcriptome [ 39 ] , and ( v ) the 9 , 473 1:1orthologsacross5Dysderaspecies , D . silvatica ; D . gomerensis Strand , 1911 ; D . verneaui Simon , 1883 ; D . tilosensis Wunderlich , 1992 ; and D . bandamae Schmidt , 1973 obtained from the comparative transcriptomics analysis of these species [ 42 ] . [SEP] B-Application [SEP] BUSCO [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008","Particularly , we used 5 datasets , BUSCO v 3 ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) with genome option [ 40 ] using ( i ) the Arthropoda or ( ii ) the Metazoa dataset , ( iii ) the 457 core eukaryotic genes ( CEGs ) of Drosophila melanogaster [ 41 ] , ( iv ) the 58 , 966 transcripts in the D . silvatica transcriptome [ 39 ] , and ( v ) the 9 , 473 1:1orthologsacross5Dysderaspecies , D . silvatica ; D . gomerensis Strand , 1911 ; D . verneaui Simon , 1883 ; D . tilosensis Wunderlich , 1992 ; and D . bandamae Schmidt , 1973 obtained from the comparative transcriptomics analysis of these species [ 42 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008 [SEP] B-Application [SEP] BUSCO"
9,7,B-Version [SEP] 3,B-Application [SEP] BUSCO,86,"Particularly , we used 5 datasets , BUSCO v 3 ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) with genome option [ 40 ] using ( i ) the Arthropoda or ( ii ) the Metazoa dataset , ( iii ) the 457 core eukaryotic genes ( CEGs ) of Drosophila melanogaster [ 41 ] , ( iv ) the 58 , 966 transcripts in the D . silvatica transcriptome [ 39 ] , and ( v ) the 9 , 473 1:1orthologsacross5Dysderaspecies , D . silvatica ; D . gomerensis Strand , 1911 ; D . verneaui Simon , 1883 ; D . tilosensis Wunderlich , 1992 ; and D . bandamae Schmidt , 1973 obtained from the comparative transcriptomics analysis of these species [ 42 ] .","Particularly , we used 5 datasets , BUSCO v 3 ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) with genome option [ 40 ] using ( i ) the Arthropoda or ( ii ) the Metazoa dataset , ( iii ) the 457 core eukaryotic genes ( CEGs ) of Drosophila melanogaster [ 41 ] , ( iv ) the 58 , 966 transcripts in the D . silvatica transcriptome [ 39 ] , and ( v ) the 9 , 473 1:1orthologsacross5Dysderaspecies , D . silvatica ; D . gomerensis Strand , 1911 ; D . verneaui Simon , 1883 ; D . tilosensis Wunderlich , 1992 ; and D . bandamae Schmidt , 1973 obtained from the comparative transcriptomics analysis of these species [ 42 ] . [SEP] B-Version [SEP] 3 [SEP] B-Application [SEP] BUSCO","Particularly , we used 5 datasets , BUSCO v 3 ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) with genome option [ 40 ] using ( i ) the Arthropoda or ( ii ) the Metazoa dataset , ( iii ) the 457 core eukaryotic genes ( CEGs ) of Drosophila melanogaster [ 41 ] , ( iv ) the 58 , 966 transcripts in the D . silvatica transcriptome [ 39 ] , and ( v ) the 9 , 473 1:1orthologsacross5Dysderaspecies , D . silvatica ; D . gomerensis Strand , 1911 ; D . verneaui Simon , 1883 ; D . tilosensis Wunderlich , 1992 ; and D . bandamae Schmidt , 1973 obtained from the comparative transcriptomics analysis of these species [ 42 ] . [SEP] B-Application [SEP] BUSCO [SEP] B-Version [SEP] 3"
9,11,B-Version [SEP] 3,B-Application [SEP] BUSCO,86,"Particularly , we used 5 datasets , BUSCO v 3 ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) with genome option [ 40 ] using ( i ) the Arthropoda or ( ii ) the Metazoa dataset , ( iii ) the 457 core eukaryotic genes ( CEGs ) of Drosophila melanogaster [ 41 ] , ( iv ) the 58 , 966 transcripts in the D . silvatica transcriptome [ 39 ] , and ( v ) the 9 , 473 1:1orthologsacross5Dysderaspecies , D . silvatica ; D . gomerensis Strand , 1911 ; D . verneaui Simon , 1883 ; D . tilosensis Wunderlich , 1992 ; and D . bandamae Schmidt , 1973 obtained from the comparative transcriptomics analysis of these species [ 42 ] .","Particularly , we used 5 datasets , BUSCO v 3 ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) with genome option [ 40 ] using ( i ) the Arthropoda or ( ii ) the Metazoa dataset , ( iii ) the 457 core eukaryotic genes ( CEGs ) of Drosophila melanogaster [ 41 ] , ( iv ) the 58 , 966 transcripts in the D . silvatica transcriptome [ 39 ] , and ( v ) the 9 , 473 1:1orthologsacross5Dysderaspecies , D . silvatica ; D . gomerensis Strand , 1911 ; D . verneaui Simon , 1883 ; D . tilosensis Wunderlich , 1992 ; and D . bandamae Schmidt , 1973 obtained from the comparative transcriptomics analysis of these species [ 42 ] . [SEP] B-Version [SEP] 3 [SEP] B-Application [SEP] BUSCO","Particularly , we used 5 datasets , BUSCO v 3 ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) with genome option [ 40 ] using ( i ) the Arthropoda or ( ii ) the Metazoa dataset , ( iii ) the 457 core eukaryotic genes ( CEGs ) of Drosophila melanogaster [ 41 ] , ( iv ) the 58 , 966 transcripts in the D . silvatica transcriptome [ 39 ] , and ( v ) the 9 , 473 1:1orthologsacross5Dysderaspecies , D . silvatica ; D . gomerensis Strand , 1911 ; D . verneaui Simon , 1883 ; D . tilosensis Wunderlich , 1992 ; and D . bandamae Schmidt , 1973 obtained from the comparative transcriptomics analysis of these species [ 42 ] . [SEP] B-Application [SEP] BUSCO [SEP] B-Version [SEP] 3"
9,13,B-Version [SEP] 3,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008,86,"Particularly , we used 5 datasets , BUSCO v 3 ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) with genome option [ 40 ] using ( i ) the Arthropoda or ( ii ) the Metazoa dataset , ( iii ) the 457 core eukaryotic genes ( CEGs ) of Drosophila melanogaster [ 41 ] , ( iv ) the 58 , 966 transcripts in the D . silvatica transcriptome [ 39 ] , and ( v ) the 9 , 473 1:1orthologsacross5Dysderaspecies , D . silvatica ; D . gomerensis Strand , 1911 ; D . verneaui Simon , 1883 ; D . tilosensis Wunderlich , 1992 ; and D . bandamae Schmidt , 1973 obtained from the comparative transcriptomics analysis of these species [ 42 ] .","Particularly , we used 5 datasets , BUSCO v 3 ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) with genome option [ 40 ] using ( i ) the Arthropoda or ( ii ) the Metazoa dataset , ( iii ) the 457 core eukaryotic genes ( CEGs ) of Drosophila melanogaster [ 41 ] , ( iv ) the 58 , 966 transcripts in the D . silvatica transcriptome [ 39 ] , and ( v ) the 9 , 473 1:1orthologsacross5Dysderaspecies , D . silvatica ; D . gomerensis Strand , 1911 ; D . verneaui Simon , 1883 ; D . tilosensis Wunderlich , 1992 ; and D . bandamae Schmidt , 1973 obtained from the comparative transcriptomics analysis of these species [ 42 ] . [SEP] B-Version [SEP] 3 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008","Particularly , we used 5 datasets , BUSCO v 3 ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) with genome option [ 40 ] using ( i ) the Arthropoda or ( ii ) the Metazoa dataset , ( iii ) the 457 core eukaryotic genes ( CEGs ) of Drosophila melanogaster [ 41 ] , ( iv ) the 58 , 966 transcripts in the D . silvatica transcriptome [ 39 ] , and ( v ) the 9 , 473 1:1orthologsacross5Dysderaspecies , D . silvatica ; D . gomerensis Strand , 1911 ; D . verneaui Simon , 1883 ; D . tilosensis Wunderlich , 1992 ; and D . bandamae Schmidt , 1973 obtained from the comparative transcriptomics analysis of these species [ 42 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008 [SEP] B-Version [SEP] 3"
11,9,B-Application [SEP] BUSCO,B-Version [SEP] 3,86,"Particularly , we used 5 datasets , BUSCO v 3 ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) with genome option [ 40 ] using ( i ) the Arthropoda or ( ii ) the Metazoa dataset , ( iii ) the 457 core eukaryotic genes ( CEGs ) of Drosophila melanogaster [ 41 ] , ( iv ) the 58 , 966 transcripts in the D . silvatica transcriptome [ 39 ] , and ( v ) the 9 , 473 1:1orthologsacross5Dysderaspecies , D . silvatica ; D . gomerensis Strand , 1911 ; D . verneaui Simon , 1883 ; D . tilosensis Wunderlich , 1992 ; and D . bandamae Schmidt , 1973 obtained from the comparative transcriptomics analysis of these species [ 42 ] .","Particularly , we used 5 datasets , BUSCO v 3 ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) with genome option [ 40 ] using ( i ) the Arthropoda or ( ii ) the Metazoa dataset , ( iii ) the 457 core eukaryotic genes ( CEGs ) of Drosophila melanogaster [ 41 ] , ( iv ) the 58 , 966 transcripts in the D . silvatica transcriptome [ 39 ] , and ( v ) the 9 , 473 1:1orthologsacross5Dysderaspecies , D . silvatica ; D . gomerensis Strand , 1911 ; D . verneaui Simon , 1883 ; D . tilosensis Wunderlich , 1992 ; and D . bandamae Schmidt , 1973 obtained from the comparative transcriptomics analysis of these species [ 42 ] . [SEP] B-Application [SEP] BUSCO [SEP] B-Version [SEP] 3","Particularly , we used 5 datasets , BUSCO v 3 ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) with genome option [ 40 ] using ( i ) the Arthropoda or ( ii ) the Metazoa dataset , ( iii ) the 457 core eukaryotic genes ( CEGs ) of Drosophila melanogaster [ 41 ] , ( iv ) the 58 , 966 transcripts in the D . silvatica transcriptome [ 39 ] , and ( v ) the 9 , 473 1:1orthologsacross5Dysderaspecies , D . silvatica ; D . gomerensis Strand , 1911 ; D . verneaui Simon , 1883 ; D . tilosensis Wunderlich , 1992 ; and D . bandamae Schmidt , 1973 obtained from the comparative transcriptomics analysis of these species [ 42 ] . [SEP] B-Version [SEP] 3 [SEP] B-Application [SEP] BUSCO"
11,13,B-Application [SEP] BUSCO,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008,86,"Particularly , we used 5 datasets , BUSCO v 3 ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) with genome option [ 40 ] using ( i ) the Arthropoda or ( ii ) the Metazoa dataset , ( iii ) the 457 core eukaryotic genes ( CEGs ) of Drosophila melanogaster [ 41 ] , ( iv ) the 58 , 966 transcripts in the D . silvatica transcriptome [ 39 ] , and ( v ) the 9 , 473 1:1orthologsacross5Dysderaspecies , D . silvatica ; D . gomerensis Strand , 1911 ; D . verneaui Simon , 1883 ; D . tilosensis Wunderlich , 1992 ; and D . bandamae Schmidt , 1973 obtained from the comparative transcriptomics analysis of these species [ 42 ] .","Particularly , we used 5 datasets , BUSCO v 3 ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) with genome option [ 40 ] using ( i ) the Arthropoda or ( ii ) the Metazoa dataset , ( iii ) the 457 core eukaryotic genes ( CEGs ) of Drosophila melanogaster [ 41 ] , ( iv ) the 58 , 966 transcripts in the D . silvatica transcriptome [ 39 ] , and ( v ) the 9 , 473 1:1orthologsacross5Dysderaspecies , D . silvatica ; D . gomerensis Strand , 1911 ; D . verneaui Simon , 1883 ; D . tilosensis Wunderlich , 1992 ; and D . bandamae Schmidt , 1973 obtained from the comparative transcriptomics analysis of these species [ 42 ] . [SEP] B-Application [SEP] BUSCO [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008","Particularly , we used 5 datasets , BUSCO v 3 ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) with genome option [ 40 ] using ( i ) the Arthropoda or ( ii ) the Metazoa dataset , ( iii ) the 457 core eukaryotic genes ( CEGs ) of Drosophila melanogaster [ 41 ] , ( iv ) the 58 , 966 transcripts in the D . silvatica transcriptome [ 39 ] , and ( v ) the 9 , 473 1:1orthologsacross5Dysderaspecies , D . silvatica ; D . gomerensis Strand , 1911 ; D . verneaui Simon , 1883 ; D . tilosensis Wunderlich , 1992 ; and D . bandamae Schmidt , 1973 obtained from the comparative transcriptomics analysis of these species [ 42 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008 [SEP] B-Application [SEP] BUSCO"
13,7,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008,B-Application [SEP] BUSCO,86,"Particularly , we used 5 datasets , BUSCO v 3 ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) with genome option [ 40 ] using ( i ) the Arthropoda or ( ii ) the Metazoa dataset , ( iii ) the 457 core eukaryotic genes ( CEGs ) of Drosophila melanogaster [ 41 ] , ( iv ) the 58 , 966 transcripts in the D . silvatica transcriptome [ 39 ] , and ( v ) the 9 , 473 1:1orthologsacross5Dysderaspecies , D . silvatica ; D . gomerensis Strand , 1911 ; D . verneaui Simon , 1883 ; D . tilosensis Wunderlich , 1992 ; and D . bandamae Schmidt , 1973 obtained from the comparative transcriptomics analysis of these species [ 42 ] .","Particularly , we used 5 datasets , BUSCO v 3 ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) with genome option [ 40 ] using ( i ) the Arthropoda or ( ii ) the Metazoa dataset , ( iii ) the 457 core eukaryotic genes ( CEGs ) of Drosophila melanogaster [ 41 ] , ( iv ) the 58 , 966 transcripts in the D . silvatica transcriptome [ 39 ] , and ( v ) the 9 , 473 1:1orthologsacross5Dysderaspecies , D . silvatica ; D . gomerensis Strand , 1911 ; D . verneaui Simon , 1883 ; D . tilosensis Wunderlich , 1992 ; and D . bandamae Schmidt , 1973 obtained from the comparative transcriptomics analysis of these species [ 42 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008 [SEP] B-Application [SEP] BUSCO","Particularly , we used 5 datasets , BUSCO v 3 ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) with genome option [ 40 ] using ( i ) the Arthropoda or ( ii ) the Metazoa dataset , ( iii ) the 457 core eukaryotic genes ( CEGs ) of Drosophila melanogaster [ 41 ] , ( iv ) the 58 , 966 transcripts in the D . silvatica transcriptome [ 39 ] , and ( v ) the 9 , 473 1:1orthologsacross5Dysderaspecies , D . silvatica ; D . gomerensis Strand , 1911 ; D . verneaui Simon , 1883 ; D . tilosensis Wunderlich , 1992 ; and D . bandamae Schmidt , 1973 obtained from the comparative transcriptomics analysis of these species [ 42 ] . [SEP] B-Application [SEP] BUSCO [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008"
13,9,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008,B-Version [SEP] 3,86,"Particularly , we used 5 datasets , BUSCO v 3 ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) with genome option [ 40 ] using ( i ) the Arthropoda or ( ii ) the Metazoa dataset , ( iii ) the 457 core eukaryotic genes ( CEGs ) of Drosophila melanogaster [ 41 ] , ( iv ) the 58 , 966 transcripts in the D . silvatica transcriptome [ 39 ] , and ( v ) the 9 , 473 1:1orthologsacross5Dysderaspecies , D . silvatica ; D . gomerensis Strand , 1911 ; D . verneaui Simon , 1883 ; D . tilosensis Wunderlich , 1992 ; and D . bandamae Schmidt , 1973 obtained from the comparative transcriptomics analysis of these species [ 42 ] .","Particularly , we used 5 datasets , BUSCO v 3 ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) with genome option [ 40 ] using ( i ) the Arthropoda or ( ii ) the Metazoa dataset , ( iii ) the 457 core eukaryotic genes ( CEGs ) of Drosophila melanogaster [ 41 ] , ( iv ) the 58 , 966 transcripts in the D . silvatica transcriptome [ 39 ] , and ( v ) the 9 , 473 1:1orthologsacross5Dysderaspecies , D . silvatica ; D . gomerensis Strand , 1911 ; D . verneaui Simon , 1883 ; D . tilosensis Wunderlich , 1992 ; and D . bandamae Schmidt , 1973 obtained from the comparative transcriptomics analysis of these species [ 42 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008 [SEP] B-Version [SEP] 3","Particularly , we used 5 datasets , BUSCO v 3 ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) with genome option [ 40 ] using ( i ) the Arthropoda or ( ii ) the Metazoa dataset , ( iii ) the 457 core eukaryotic genes ( CEGs ) of Drosophila melanogaster [ 41 ] , ( iv ) the 58 , 966 transcripts in the D . silvatica transcriptome [ 39 ] , and ( v ) the 9 , 473 1:1orthologsacross5Dysderaspecies , D . silvatica ; D . gomerensis Strand , 1911 ; D . verneaui Simon , 1883 ; D . tilosensis Wunderlich , 1992 ; and D . bandamae Schmidt , 1973 obtained from the comparative transcriptomics analysis of these species [ 42 ] . [SEP] B-Version [SEP] 3 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008"
13,11,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008,B-Application [SEP] BUSCO,86,"Particularly , we used 5 datasets , BUSCO v 3 ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) with genome option [ 40 ] using ( i ) the Arthropoda or ( ii ) the Metazoa dataset , ( iii ) the 457 core eukaryotic genes ( CEGs ) of Drosophila melanogaster [ 41 ] , ( iv ) the 58 , 966 transcripts in the D . silvatica transcriptome [ 39 ] , and ( v ) the 9 , 473 1:1orthologsacross5Dysderaspecies , D . silvatica ; D . gomerensis Strand , 1911 ; D . verneaui Simon , 1883 ; D . tilosensis Wunderlich , 1992 ; and D . bandamae Schmidt , 1973 obtained from the comparative transcriptomics analysis of these species [ 42 ] .","Particularly , we used 5 datasets , BUSCO v 3 ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) with genome option [ 40 ] using ( i ) the Arthropoda or ( ii ) the Metazoa dataset , ( iii ) the 457 core eukaryotic genes ( CEGs ) of Drosophila melanogaster [ 41 ] , ( iv ) the 58 , 966 transcripts in the D . silvatica transcriptome [ 39 ] , and ( v ) the 9 , 473 1:1orthologsacross5Dysderaspecies , D . silvatica ; D . gomerensis Strand , 1911 ; D . verneaui Simon , 1883 ; D . tilosensis Wunderlich , 1992 ; and D . bandamae Schmidt , 1973 obtained from the comparative transcriptomics analysis of these species [ 42 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008 [SEP] B-Application [SEP] BUSCO","Particularly , we used 5 datasets , BUSCO v 3 ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) with genome option [ 40 ] using ( i ) the Arthropoda or ( ii ) the Metazoa dataset , ( iii ) the 457 core eukaryotic genes ( CEGs ) of Drosophila melanogaster [ 41 ] , ( iv ) the 58 , 966 transcripts in the D . silvatica transcriptome [ 39 ] , and ( v ) the 9 , 473 1:1orthologsacross5Dysderaspecies , D . silvatica ; D . gomerensis Strand , 1911 ; D . verneaui Simon , 1883 ; D . tilosensis Wunderlich , 1992 ; and D . bandamae Schmidt , 1973 obtained from the comparative transcriptomics analysis of these species [ 42 ] . [SEP] B-Application [SEP] BUSCO [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008"
58,57,B-Citation [SEP] [ 45 ],B-Version [SEP] 2,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 45 ] [SEP] B-Version [SEP] 2","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 45 ]"
58,56,B-Citation [SEP] [ 45 ],B-Application [SEP] minimap,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 45 ] [SEP] B-Application [SEP] minimap","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] minimap [SEP] B-Citation [SEP] [ 45 ]"
58,47,B-Citation [SEP] [ 45 ],B-Citation [SEP] [ 44 ],87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 45 ] [SEP] B-Citation [SEP] [ 44 ]","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 44 ] [SEP] B-Citation [SEP] [ 45 ]"
58,45,B-Citation [SEP] [ 45 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 45 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476 [SEP] B-Citation [SEP] [ 45 ]"
58,42,B-Citation [SEP] [ 45 ],B-Developer [SEP] bowtie 2,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 45 ] [SEP] B-Developer [SEP] bowtie 2","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] bowtie 2 [SEP] B-Citation [SEP] [ 45 ]"
58,23,B-Citation [SEP] [ 45 ],B-Citation [SEP] [ 43 ],87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 45 ] [SEP] B-Citation [SEP] [ 43 ]","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 43 ] [SEP] B-Citation [SEP] [ 45 ]"
58,33,B-Citation [SEP] [ 45 ],B-Application [SEP] bowtie 2,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 45 ] [SEP] B-Application [SEP] bowtie 2","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] bowtie 2 [SEP] B-Citation [SEP] [ 45 ]"
58,21,B-Citation [SEP] [ 45 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 45 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105 [SEP] B-Citation [SEP] [ 45 ]"
58,19,B-Citation [SEP] [ 45 ],B-Developer [SEP] SAMtools,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 45 ] [SEP] B-Developer [SEP] SAMtools","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] SAMtools [SEP] B-Citation [SEP] [ 45 ]"
58,13,B-Citation [SEP] [ 45 ],B-Version [SEP] 1 . 3 . 1,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 45 ] [SEP] B-Version [SEP] 1 . 3 . 1","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 1 . 3 . 1 [SEP] B-Citation [SEP] [ 45 ]"
58,11,B-Citation [SEP] [ 45 ],B-Application [SEP] SAMtools,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 45 ] [SEP] B-Application [SEP] SAMtools","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] SAMtools [SEP] B-Citation [SEP] [ 45 ]"
58,36,B-Citation [SEP] [ 45 ],B-Version [SEP] 2 . 2 . 9,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 45 ] [SEP] B-Version [SEP] 2 . 2 . 9","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 . 2 . 9 [SEP] B-Citation [SEP] [ 45 ]"
57,58,B-Version [SEP] 2,B-Citation [SEP] [ 45 ],87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 45 ]","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 45 ] [SEP] B-Version [SEP] 2"
57,56,B-Version [SEP] 2,B-Application [SEP] minimap,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] minimap","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] minimap [SEP] B-Version [SEP] 2"
57,47,B-Version [SEP] 2,B-Citation [SEP] [ 44 ],87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 44 ]","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 44 ] [SEP] B-Version [SEP] 2"
57,45,B-Version [SEP] 2,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476 [SEP] B-Version [SEP] 2"
57,42,B-Version [SEP] 2,B-Developer [SEP] bowtie 2,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 [SEP] B-Developer [SEP] bowtie 2","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] bowtie 2 [SEP] B-Version [SEP] 2"
57,23,B-Version [SEP] 2,B-Citation [SEP] [ 43 ],87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 43 ]","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 43 ] [SEP] B-Version [SEP] 2"
57,33,B-Version [SEP] 2,B-Application [SEP] bowtie 2,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] bowtie 2","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] bowtie 2 [SEP] B-Version [SEP] 2"
57,21,B-Version [SEP] 2,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105 [SEP] B-Version [SEP] 2"
57,19,B-Version [SEP] 2,B-Developer [SEP] SAMtools,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 [SEP] B-Developer [SEP] SAMtools","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] SAMtools [SEP] B-Version [SEP] 2"
57,13,B-Version [SEP] 2,B-Version [SEP] 1 . 3 . 1,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 [SEP] B-Version [SEP] 1 . 3 . 1","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 1 . 3 . 1 [SEP] B-Version [SEP] 2"
57,11,B-Version [SEP] 2,B-Application [SEP] SAMtools,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] SAMtools","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] SAMtools [SEP] B-Version [SEP] 2"
57,36,B-Version [SEP] 2,B-Version [SEP] 2 . 2 . 9,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 [SEP] B-Version [SEP] 2 . 2 . 9","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 . 2 . 9 [SEP] B-Version [SEP] 2"
56,58,B-Application [SEP] minimap,B-Citation [SEP] [ 45 ],87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] minimap [SEP] B-Citation [SEP] [ 45 ]","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 45 ] [SEP] B-Application [SEP] minimap"
56,57,B-Application [SEP] minimap,B-Version [SEP] 2,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] minimap [SEP] B-Version [SEP] 2","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] minimap"
56,47,B-Application [SEP] minimap,B-Citation [SEP] [ 44 ],87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] minimap [SEP] B-Citation [SEP] [ 44 ]","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 44 ] [SEP] B-Application [SEP] minimap"
56,45,B-Application [SEP] minimap,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] minimap [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476 [SEP] B-Application [SEP] minimap"
56,42,B-Application [SEP] minimap,B-Developer [SEP] bowtie 2,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] minimap [SEP] B-Developer [SEP] bowtie 2","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] bowtie 2 [SEP] B-Application [SEP] minimap"
56,23,B-Application [SEP] minimap,B-Citation [SEP] [ 43 ],87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] minimap [SEP] B-Citation [SEP] [ 43 ]","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 43 ] [SEP] B-Application [SEP] minimap"
56,33,B-Application [SEP] minimap,B-Application [SEP] bowtie 2,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] minimap [SEP] B-Application [SEP] bowtie 2","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] bowtie 2 [SEP] B-Application [SEP] minimap"
56,21,B-Application [SEP] minimap,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] minimap [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105 [SEP] B-Application [SEP] minimap"
56,19,B-Application [SEP] minimap,B-Developer [SEP] SAMtools,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] minimap [SEP] B-Developer [SEP] SAMtools","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] SAMtools [SEP] B-Application [SEP] minimap"
56,13,B-Application [SEP] minimap,B-Version [SEP] 1 . 3 . 1,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] minimap [SEP] B-Version [SEP] 1 . 3 . 1","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 1 . 3 . 1 [SEP] B-Application [SEP] minimap"
56,11,B-Application [SEP] minimap,B-Application [SEP] SAMtools,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] minimap [SEP] B-Application [SEP] SAMtools","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] SAMtools [SEP] B-Application [SEP] minimap"
56,36,B-Application [SEP] minimap,B-Version [SEP] 2 . 2 . 9,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] minimap [SEP] B-Version [SEP] 2 . 2 . 9","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 . 2 . 9 [SEP] B-Application [SEP] minimap"
47,58,B-Citation [SEP] [ 44 ],B-Citation [SEP] [ 45 ],87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 44 ] [SEP] B-Citation [SEP] [ 45 ]","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 45 ] [SEP] B-Citation [SEP] [ 44 ]"
47,57,B-Citation [SEP] [ 44 ],B-Version [SEP] 2,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 44 ] [SEP] B-Version [SEP] 2","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 44 ]"
47,56,B-Citation [SEP] [ 44 ],B-Application [SEP] minimap,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 44 ] [SEP] B-Application [SEP] minimap","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] minimap [SEP] B-Citation [SEP] [ 44 ]"
47,45,B-Citation [SEP] [ 44 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 44 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476 [SEP] B-Citation [SEP] [ 44 ]"
47,42,B-Citation [SEP] [ 44 ],B-Developer [SEP] bowtie 2,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 44 ] [SEP] B-Developer [SEP] bowtie 2","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] bowtie 2 [SEP] B-Citation [SEP] [ 44 ]"
47,23,B-Citation [SEP] [ 44 ],B-Citation [SEP] [ 43 ],87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 44 ] [SEP] B-Citation [SEP] [ 43 ]","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 43 ] [SEP] B-Citation [SEP] [ 44 ]"
47,33,B-Citation [SEP] [ 44 ],B-Application [SEP] bowtie 2,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 44 ] [SEP] B-Application [SEP] bowtie 2","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] bowtie 2 [SEP] B-Citation [SEP] [ 44 ]"
47,21,B-Citation [SEP] [ 44 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 44 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105 [SEP] B-Citation [SEP] [ 44 ]"
47,19,B-Citation [SEP] [ 44 ],B-Developer [SEP] SAMtools,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 44 ] [SEP] B-Developer [SEP] SAMtools","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] SAMtools [SEP] B-Citation [SEP] [ 44 ]"
47,13,B-Citation [SEP] [ 44 ],B-Version [SEP] 1 . 3 . 1,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 44 ] [SEP] B-Version [SEP] 1 . 3 . 1","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 1 . 3 . 1 [SEP] B-Citation [SEP] [ 44 ]"
47,11,B-Citation [SEP] [ 44 ],B-Application [SEP] SAMtools,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 44 ] [SEP] B-Application [SEP] SAMtools","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] SAMtools [SEP] B-Citation [SEP] [ 44 ]"
47,36,B-Citation [SEP] [ 44 ],B-Version [SEP] 2 . 2 . 9,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 44 ] [SEP] B-Version [SEP] 2 . 2 . 9","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 . 2 . 9 [SEP] B-Citation [SEP] [ 44 ]"
45,58,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476,B-Citation [SEP] [ 45 ],87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476 [SEP] B-Citation [SEP] [ 45 ]","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 45 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476"
45,57,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476,B-Version [SEP] 2,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476 [SEP] B-Version [SEP] 2","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476"
45,56,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476,B-Application [SEP] minimap,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476 [SEP] B-Application [SEP] minimap","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] minimap [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476"
45,47,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476,B-Citation [SEP] [ 44 ],87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476 [SEP] B-Citation [SEP] [ 44 ]","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 44 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476"
45,42,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476,B-Developer [SEP] bowtie 2,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476 [SEP] B-Developer [SEP] bowtie 2","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] bowtie 2 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476"
45,23,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476,B-Citation [SEP] [ 43 ],87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476 [SEP] B-Citation [SEP] [ 43 ]","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 43 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476"
45,33,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476,B-Application [SEP] bowtie 2,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476 [SEP] B-Application [SEP] bowtie 2","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] bowtie 2 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476"
45,21,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476"
45,19,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476,B-Developer [SEP] SAMtools,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476 [SEP] B-Developer [SEP] SAMtools","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] SAMtools [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476"
45,13,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476,B-Version [SEP] 1 . 3 . 1,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476 [SEP] B-Version [SEP] 1 . 3 . 1","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 1 . 3 . 1 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476"
45,11,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476,B-Application [SEP] SAMtools,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476 [SEP] B-Application [SEP] SAMtools","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] SAMtools [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476"
45,36,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476,B-Version [SEP] 2 . 2 . 9,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476 [SEP] B-Version [SEP] 2 . 2 . 9","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 . 2 . 9 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476"
42,58,B-Developer [SEP] bowtie 2,B-Citation [SEP] [ 45 ],87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] bowtie 2 [SEP] B-Citation [SEP] [ 45 ]","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 45 ] [SEP] B-Developer [SEP] bowtie 2"
42,57,B-Developer [SEP] bowtie 2,B-Version [SEP] 2,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] bowtie 2 [SEP] B-Version [SEP] 2","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 [SEP] B-Developer [SEP] bowtie 2"
42,56,B-Developer [SEP] bowtie 2,B-Application [SEP] minimap,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] bowtie 2 [SEP] B-Application [SEP] minimap","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] minimap [SEP] B-Developer [SEP] bowtie 2"
42,47,B-Developer [SEP] bowtie 2,B-Citation [SEP] [ 44 ],87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] bowtie 2 [SEP] B-Citation [SEP] [ 44 ]","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 44 ] [SEP] B-Developer [SEP] bowtie 2"
42,45,B-Developer [SEP] bowtie 2,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] bowtie 2 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476 [SEP] B-Developer [SEP] bowtie 2"
42,23,B-Developer [SEP] bowtie 2,B-Citation [SEP] [ 43 ],87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] bowtie 2 [SEP] B-Citation [SEP] [ 43 ]","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 43 ] [SEP] B-Developer [SEP] bowtie 2"
42,33,B-Developer [SEP] bowtie 2,B-Application [SEP] bowtie 2,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] bowtie 2 [SEP] B-Application [SEP] bowtie 2","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] bowtie 2 [SEP] B-Developer [SEP] bowtie 2"
42,21,B-Developer [SEP] bowtie 2,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] bowtie 2 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105 [SEP] B-Developer [SEP] bowtie 2"
42,19,B-Developer [SEP] bowtie 2,B-Developer [SEP] SAMtools,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] bowtie 2 [SEP] B-Developer [SEP] SAMtools","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] SAMtools [SEP] B-Developer [SEP] bowtie 2"
42,13,B-Developer [SEP] bowtie 2,B-Version [SEP] 1 . 3 . 1,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] bowtie 2 [SEP] B-Version [SEP] 1 . 3 . 1","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 1 . 3 . 1 [SEP] B-Developer [SEP] bowtie 2"
42,11,B-Developer [SEP] bowtie 2,B-Application [SEP] SAMtools,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] bowtie 2 [SEP] B-Application [SEP] SAMtools","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] SAMtools [SEP] B-Developer [SEP] bowtie 2"
42,36,B-Developer [SEP] bowtie 2,B-Version [SEP] 2 . 2 . 9,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] bowtie 2 [SEP] B-Version [SEP] 2 . 2 . 9","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 . 2 . 9 [SEP] B-Developer [SEP] bowtie 2"
23,58,B-Citation [SEP] [ 43 ],B-Citation [SEP] [ 45 ],87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 43 ] [SEP] B-Citation [SEP] [ 45 ]","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 45 ] [SEP] B-Citation [SEP] [ 43 ]"
23,57,B-Citation [SEP] [ 43 ],B-Version [SEP] 2,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 43 ] [SEP] B-Version [SEP] 2","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 43 ]"
23,56,B-Citation [SEP] [ 43 ],B-Application [SEP] minimap,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 43 ] [SEP] B-Application [SEP] minimap","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] minimap [SEP] B-Citation [SEP] [ 43 ]"
23,47,B-Citation [SEP] [ 43 ],B-Citation [SEP] [ 44 ],87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 43 ] [SEP] B-Citation [SEP] [ 44 ]","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 44 ] [SEP] B-Citation [SEP] [ 43 ]"
23,45,B-Citation [SEP] [ 43 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 43 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476 [SEP] B-Citation [SEP] [ 43 ]"
23,42,B-Citation [SEP] [ 43 ],B-Developer [SEP] bowtie 2,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 43 ] [SEP] B-Developer [SEP] bowtie 2","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] bowtie 2 [SEP] B-Citation [SEP] [ 43 ]"
23,33,B-Citation [SEP] [ 43 ],B-Application [SEP] bowtie 2,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 43 ] [SEP] B-Application [SEP] bowtie 2","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] bowtie 2 [SEP] B-Citation [SEP] [ 43 ]"
23,21,B-Citation [SEP] [ 43 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 43 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105 [SEP] B-Citation [SEP] [ 43 ]"
23,19,B-Citation [SEP] [ 43 ],B-Developer [SEP] SAMtools,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 43 ] [SEP] B-Developer [SEP] SAMtools","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] SAMtools [SEP] B-Citation [SEP] [ 43 ]"
23,13,B-Citation [SEP] [ 43 ],B-Version [SEP] 1 . 3 . 1,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 43 ] [SEP] B-Version [SEP] 1 . 3 . 1","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 1 . 3 . 1 [SEP] B-Citation [SEP] [ 43 ]"
23,11,B-Citation [SEP] [ 43 ],B-Application [SEP] SAMtools,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 43 ] [SEP] B-Application [SEP] SAMtools","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] SAMtools [SEP] B-Citation [SEP] [ 43 ]"
23,36,B-Citation [SEP] [ 43 ],B-Version [SEP] 2 . 2 . 9,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 43 ] [SEP] B-Version [SEP] 2 . 2 . 9","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 . 2 . 9 [SEP] B-Citation [SEP] [ 43 ]"
33,58,B-Application [SEP] bowtie 2,B-Citation [SEP] [ 45 ],87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] bowtie 2 [SEP] B-Citation [SEP] [ 45 ]","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 45 ] [SEP] B-Application [SEP] bowtie 2"
33,57,B-Application [SEP] bowtie 2,B-Version [SEP] 2,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] bowtie 2 [SEP] B-Version [SEP] 2","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] bowtie 2"
33,56,B-Application [SEP] bowtie 2,B-Application [SEP] minimap,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] bowtie 2 [SEP] B-Application [SEP] minimap","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] minimap [SEP] B-Application [SEP] bowtie 2"
33,47,B-Application [SEP] bowtie 2,B-Citation [SEP] [ 44 ],87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] bowtie 2 [SEP] B-Citation [SEP] [ 44 ]","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 44 ] [SEP] B-Application [SEP] bowtie 2"
33,45,B-Application [SEP] bowtie 2,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] bowtie 2 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476 [SEP] B-Application [SEP] bowtie 2"
33,42,B-Application [SEP] bowtie 2,B-Developer [SEP] bowtie 2,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] bowtie 2 [SEP] B-Developer [SEP] bowtie 2","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] bowtie 2 [SEP] B-Application [SEP] bowtie 2"
33,23,B-Application [SEP] bowtie 2,B-Citation [SEP] [ 43 ],87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] bowtie 2 [SEP] B-Citation [SEP] [ 43 ]","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 43 ] [SEP] B-Application [SEP] bowtie 2"
33,21,B-Application [SEP] bowtie 2,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] bowtie 2 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105 [SEP] B-Application [SEP] bowtie 2"
33,19,B-Application [SEP] bowtie 2,B-Developer [SEP] SAMtools,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] bowtie 2 [SEP] B-Developer [SEP] SAMtools","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] SAMtools [SEP] B-Application [SEP] bowtie 2"
33,13,B-Application [SEP] bowtie 2,B-Version [SEP] 1 . 3 . 1,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] bowtie 2 [SEP] B-Version [SEP] 1 . 3 . 1","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 1 . 3 . 1 [SEP] B-Application [SEP] bowtie 2"
33,11,B-Application [SEP] bowtie 2,B-Application [SEP] SAMtools,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] bowtie 2 [SEP] B-Application [SEP] SAMtools","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] SAMtools [SEP] B-Application [SEP] bowtie 2"
33,36,B-Application [SEP] bowtie 2,B-Version [SEP] 2 . 2 . 9,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] bowtie 2 [SEP] B-Version [SEP] 2 . 2 . 9","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 . 2 . 9 [SEP] B-Application [SEP] bowtie 2"
21,58,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105,B-Citation [SEP] [ 45 ],87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105 [SEP] B-Citation [SEP] [ 45 ]","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 45 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105"
21,57,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105,B-Version [SEP] 2,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105 [SEP] B-Version [SEP] 2","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105"
21,56,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105,B-Application [SEP] minimap,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105 [SEP] B-Application [SEP] minimap","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] minimap [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105"
21,47,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105,B-Citation [SEP] [ 44 ],87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105 [SEP] B-Citation [SEP] [ 44 ]","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 44 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105"
21,45,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105"
21,42,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105,B-Developer [SEP] bowtie 2,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105 [SEP] B-Developer [SEP] bowtie 2","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] bowtie 2 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105"
21,23,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105,B-Citation [SEP] [ 43 ],87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105 [SEP] B-Citation [SEP] [ 43 ]","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 43 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105"
21,33,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105,B-Application [SEP] bowtie 2,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105 [SEP] B-Application [SEP] bowtie 2","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] bowtie 2 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105"
21,19,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105,B-Developer [SEP] SAMtools,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105 [SEP] B-Developer [SEP] SAMtools","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] SAMtools [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105"
21,13,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105,B-Version [SEP] 1 . 3 . 1,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105 [SEP] B-Version [SEP] 1 . 3 . 1","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 1 . 3 . 1 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105"
21,11,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105,B-Application [SEP] SAMtools,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105 [SEP] B-Application [SEP] SAMtools","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] SAMtools [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105"
21,36,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105,B-Version [SEP] 2 . 2 . 9,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105 [SEP] B-Version [SEP] 2 . 2 . 9","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 . 2 . 9 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105"
19,58,B-Developer [SEP] SAMtools,B-Citation [SEP] [ 45 ],87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] SAMtools [SEP] B-Citation [SEP] [ 45 ]","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 45 ] [SEP] B-Developer [SEP] SAMtools"
19,57,B-Developer [SEP] SAMtools,B-Version [SEP] 2,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] SAMtools [SEP] B-Version [SEP] 2","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 [SEP] B-Developer [SEP] SAMtools"
19,56,B-Developer [SEP] SAMtools,B-Application [SEP] minimap,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] SAMtools [SEP] B-Application [SEP] minimap","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] minimap [SEP] B-Developer [SEP] SAMtools"
19,47,B-Developer [SEP] SAMtools,B-Citation [SEP] [ 44 ],87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] SAMtools [SEP] B-Citation [SEP] [ 44 ]","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 44 ] [SEP] B-Developer [SEP] SAMtools"
19,45,B-Developer [SEP] SAMtools,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] SAMtools [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476 [SEP] B-Developer [SEP] SAMtools"
19,42,B-Developer [SEP] SAMtools,B-Developer [SEP] bowtie 2,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] SAMtools [SEP] B-Developer [SEP] bowtie 2","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] bowtie 2 [SEP] B-Developer [SEP] SAMtools"
19,23,B-Developer [SEP] SAMtools,B-Citation [SEP] [ 43 ],87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] SAMtools [SEP] B-Citation [SEP] [ 43 ]","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 43 ] [SEP] B-Developer [SEP] SAMtools"
19,33,B-Developer [SEP] SAMtools,B-Application [SEP] bowtie 2,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] SAMtools [SEP] B-Application [SEP] bowtie 2","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] bowtie 2 [SEP] B-Developer [SEP] SAMtools"
19,21,B-Developer [SEP] SAMtools,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] SAMtools [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105 [SEP] B-Developer [SEP] SAMtools"
19,13,B-Developer [SEP] SAMtools,B-Version [SEP] 1 . 3 . 1,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] SAMtools [SEP] B-Version [SEP] 1 . 3 . 1","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 1 . 3 . 1 [SEP] B-Developer [SEP] SAMtools"
19,11,B-Developer [SEP] SAMtools,B-Application [SEP] SAMtools,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] SAMtools [SEP] B-Application [SEP] SAMtools","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] SAMtools [SEP] B-Developer [SEP] SAMtools"
19,36,B-Developer [SEP] SAMtools,B-Version [SEP] 2 . 2 . 9,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] SAMtools [SEP] B-Version [SEP] 2 . 2 . 9","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 . 2 . 9 [SEP] B-Developer [SEP] SAMtools"
13,58,B-Version [SEP] 1 . 3 . 1,B-Citation [SEP] [ 45 ],87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 1 . 3 . 1 [SEP] B-Citation [SEP] [ 45 ]","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 45 ] [SEP] B-Version [SEP] 1 . 3 . 1"
13,57,B-Version [SEP] 1 . 3 . 1,B-Version [SEP] 2,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 1 . 3 . 1 [SEP] B-Version [SEP] 2","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 [SEP] B-Version [SEP] 1 . 3 . 1"
13,56,B-Version [SEP] 1 . 3 . 1,B-Application [SEP] minimap,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 1 . 3 . 1 [SEP] B-Application [SEP] minimap","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] minimap [SEP] B-Version [SEP] 1 . 3 . 1"
13,47,B-Version [SEP] 1 . 3 . 1,B-Citation [SEP] [ 44 ],87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 1 . 3 . 1 [SEP] B-Citation [SEP] [ 44 ]","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 44 ] [SEP] B-Version [SEP] 1 . 3 . 1"
13,45,B-Version [SEP] 1 . 3 . 1,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 1 . 3 . 1 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476 [SEP] B-Version [SEP] 1 . 3 . 1"
13,42,B-Version [SEP] 1 . 3 . 1,B-Developer [SEP] bowtie 2,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 1 . 3 . 1 [SEP] B-Developer [SEP] bowtie 2","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] bowtie 2 [SEP] B-Version [SEP] 1 . 3 . 1"
13,23,B-Version [SEP] 1 . 3 . 1,B-Citation [SEP] [ 43 ],87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 1 . 3 . 1 [SEP] B-Citation [SEP] [ 43 ]","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 43 ] [SEP] B-Version [SEP] 1 . 3 . 1"
13,33,B-Version [SEP] 1 . 3 . 1,B-Application [SEP] bowtie 2,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 1 . 3 . 1 [SEP] B-Application [SEP] bowtie 2","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] bowtie 2 [SEP] B-Version [SEP] 1 . 3 . 1"
13,21,B-Version [SEP] 1 . 3 . 1,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 1 . 3 . 1 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105 [SEP] B-Version [SEP] 1 . 3 . 1"
13,19,B-Version [SEP] 1 . 3 . 1,B-Developer [SEP] SAMtools,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 1 . 3 . 1 [SEP] B-Developer [SEP] SAMtools","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] SAMtools [SEP] B-Version [SEP] 1 . 3 . 1"
13,11,B-Version [SEP] 1 . 3 . 1,B-Application [SEP] SAMtools,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 1 . 3 . 1 [SEP] B-Application [SEP] SAMtools","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] SAMtools [SEP] B-Version [SEP] 1 . 3 . 1"
13,36,B-Version [SEP] 1 . 3 . 1,B-Version [SEP] 2 . 2 . 9,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 1 . 3 . 1 [SEP] B-Version [SEP] 2 . 2 . 9","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 . 2 . 9 [SEP] B-Version [SEP] 1 . 3 . 1"
11,58,B-Application [SEP] SAMtools,B-Citation [SEP] [ 45 ],87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] SAMtools [SEP] B-Citation [SEP] [ 45 ]","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 45 ] [SEP] B-Application [SEP] SAMtools"
11,57,B-Application [SEP] SAMtools,B-Version [SEP] 2,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] SAMtools [SEP] B-Version [SEP] 2","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] SAMtools"
11,56,B-Application [SEP] SAMtools,B-Application [SEP] minimap,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] SAMtools [SEP] B-Application [SEP] minimap","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] minimap [SEP] B-Application [SEP] SAMtools"
11,47,B-Application [SEP] SAMtools,B-Citation [SEP] [ 44 ],87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] SAMtools [SEP] B-Citation [SEP] [ 44 ]","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 44 ] [SEP] B-Application [SEP] SAMtools"
11,45,B-Application [SEP] SAMtools,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] SAMtools [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476 [SEP] B-Application [SEP] SAMtools"
11,42,B-Application [SEP] SAMtools,B-Developer [SEP] bowtie 2,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] SAMtools [SEP] B-Developer [SEP] bowtie 2","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] bowtie 2 [SEP] B-Application [SEP] SAMtools"
11,23,B-Application [SEP] SAMtools,B-Citation [SEP] [ 43 ],87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] SAMtools [SEP] B-Citation [SEP] [ 43 ]","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 43 ] [SEP] B-Application [SEP] SAMtools"
11,33,B-Application [SEP] SAMtools,B-Application [SEP] bowtie 2,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] SAMtools [SEP] B-Application [SEP] bowtie 2","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] bowtie 2 [SEP] B-Application [SEP] SAMtools"
11,21,B-Application [SEP] SAMtools,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] SAMtools [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105 [SEP] B-Application [SEP] SAMtools"
11,19,B-Application [SEP] SAMtools,B-Developer [SEP] SAMtools,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] SAMtools [SEP] B-Developer [SEP] SAMtools","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] SAMtools [SEP] B-Application [SEP] SAMtools"
11,13,B-Application [SEP] SAMtools,B-Version [SEP] 1 . 3 . 1,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] SAMtools [SEP] B-Version [SEP] 1 . 3 . 1","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 1 . 3 . 1 [SEP] B-Application [SEP] SAMtools"
11,36,B-Application [SEP] SAMtools,B-Version [SEP] 2 . 2 . 9,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] SAMtools [SEP] B-Version [SEP] 2 . 2 . 9","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 . 2 . 9 [SEP] B-Application [SEP] SAMtools"
36,58,B-Version [SEP] 2 . 2 . 9,B-Citation [SEP] [ 45 ],87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 . 2 . 9 [SEP] B-Citation [SEP] [ 45 ]","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 45 ] [SEP] B-Version [SEP] 2 . 2 . 9"
36,57,B-Version [SEP] 2 . 2 . 9,B-Version [SEP] 2,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 . 2 . 9 [SEP] B-Version [SEP] 2","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 [SEP] B-Version [SEP] 2 . 2 . 9"
36,56,B-Version [SEP] 2 . 2 . 9,B-Application [SEP] minimap,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 . 2 . 9 [SEP] B-Application [SEP] minimap","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] minimap [SEP] B-Version [SEP] 2 . 2 . 9"
36,47,B-Version [SEP] 2 . 2 . 9,B-Citation [SEP] [ 44 ],87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 . 2 . 9 [SEP] B-Citation [SEP] [ 44 ]","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 44 ] [SEP] B-Version [SEP] 2 . 2 . 9"
36,45,B-Version [SEP] 2 . 2 . 9,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 . 2 . 9 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005476 [SEP] B-Version [SEP] 2 . 2 . 9"
36,42,B-Version [SEP] 2 . 2 . 9,B-Developer [SEP] bowtie 2,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 . 2 . 9 [SEP] B-Developer [SEP] bowtie 2","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] bowtie 2 [SEP] B-Version [SEP] 2 . 2 . 9"
36,23,B-Version [SEP] 2 . 2 . 9,B-Citation [SEP] [ 43 ],87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 . 2 . 9 [SEP] B-Citation [SEP] [ 43 ]","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Citation [SEP] [ 43 ] [SEP] B-Version [SEP] 2 . 2 . 9"
36,33,B-Version [SEP] 2 . 2 . 9,B-Application [SEP] bowtie 2,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 . 2 . 9 [SEP] B-Application [SEP] bowtie 2","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] bowtie 2 [SEP] B-Version [SEP] 2 . 2 . 9"
36,21,B-Version [SEP] 2 . 2 . 9,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 . 2 . 9 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105 [SEP] B-Version [SEP] 2 . 2 . 9"
36,19,B-Version [SEP] 2 . 2 . 9,B-Developer [SEP] SAMtools,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 . 2 . 9 [SEP] B-Developer [SEP] SAMtools","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Developer [SEP] SAMtools [SEP] B-Version [SEP] 2 . 2 . 9"
36,13,B-Version [SEP] 2 . 2 . 9,B-Version [SEP] 1 . 3 . 1,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 . 2 . 9 [SEP] B-Version [SEP] 1 . 3 . 1","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 1 . 3 . 1 [SEP] B-Version [SEP] 2 . 2 . 9"
36,11,B-Version [SEP] 2 . 2 . 9,B-Application [SEP] SAMtools,87,"We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) .","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Version [SEP] 2 . 2 . 9 [SEP] B-Application [SEP] SAMtools","We determined the average genome coverage for each sequencing library with SAMtools v 1 . 3 . 1 ( SAMtools , https://scicrunch.org/resolver/RRID:SCR_002105 ) [ 43 ] , by mapping short reads ( using bowtie 2 v 2 . 2 . 9 [ bowtie 2 , https://scicrunch.org/resolver/RRID:SCR_005476 ] [ 44 ] ) or long reads ( using minimap 2 [ 45 ] ) to the final draft assembly ( Table [ 1 ] ; Supplementary Table S1 - 8 ; Supplementary Fig . S3 ) . [SEP] B-Application [SEP] SAMtools [SEP] B-Version [SEP] 2 . 2 . 9"
46,56,B-Version [SEP] v . 4 . 0,B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) [,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Version [SEP] v . 4 . 0 [SEP] B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) [","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) [ [SEP] B-Version [SEP] v . 4 . 0"
46,54,B-Version [SEP] v . 4 . 0,B-URL [SEP] RepeatMasker,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Version [SEP] v . 4 . 0 [SEP] B-URL [SEP] RepeatMasker","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-URL [SEP] RepeatMasker [SEP] B-Version [SEP] v . 4 . 0"
46,52,B-Version [SEP] v . 4 . 0,B-Developer [SEP] 7,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Version [SEP] v . 4 . 0 [SEP] B-Developer [SEP] 7","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Developer [SEP] 7 [SEP] B-Version [SEP] v . 4 . 0"
46,43,B-Version [SEP] v . 4 . 0,B-Application [SEP] strategy,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Version [SEP] v . 4 . 0 [SEP] B-Application [SEP] strategy","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Application [SEP] strategy [SEP] B-Version [SEP] v . 4 . 0"
46,32,B-Version [SEP] v . 4 . 0,B-Citation [SEP] ) [ 46,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Version [SEP] v . 4 . 0 [SEP] B-Citation [SEP] ) [ 46","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Citation [SEP] ) [ 46 [SEP] B-Version [SEP] v . 4 . 0"
46,30,B-Version [SEP] v . 4 . 0,"B-URL [SEP] ,",88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Version [SEP] v . 4 . 0 [SEP] B-URL [SEP] ,","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-URL [SEP] , [SEP] B-Version [SEP] v . 4 . 0"
46,28,B-Version [SEP] v . 4 . 0,B-Developer [SEP] (,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Version [SEP] v . 4 . 0 [SEP] B-Developer [SEP] (","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Developer [SEP] ( [SEP] B-Version [SEP] v . 4 . 0"
46,22,B-Version [SEP] v . 4 . 0,B-Version [SEP] v 1 . 0 .,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Version [SEP] v . 4 . 0 [SEP] B-Version [SEP] v 1 . 0 .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Version [SEP] v 1 . 0 . [SEP] B-Version [SEP] v . 4 . 0"
46,20,B-Version [SEP] v . 4 . 0,B-Application [SEP] with,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Version [SEP] v . 4 . 0 [SEP] B-Application [SEP] with","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Application [SEP] with [SEP] B-Version [SEP] v . 4 . 0"
56,46,B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) [,B-Version [SEP] v . 4 . 0,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) [ [SEP] B-Version [SEP] v . 4 . 0","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Version [SEP] v . 4 . 0 [SEP] B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) ["
56,54,B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) [,B-URL [SEP] RepeatMasker,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) [ [SEP] B-URL [SEP] RepeatMasker","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-URL [SEP] RepeatMasker [SEP] B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) ["
56,52,B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) [,B-Developer [SEP] 7,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) [ [SEP] B-Developer [SEP] 7","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Developer [SEP] 7 [SEP] B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) ["
56,43,B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) [,B-Application [SEP] strategy,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) [ [SEP] B-Application [SEP] strategy","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Application [SEP] strategy [SEP] B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) ["
56,32,B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) [,B-Citation [SEP] ) [ 46,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) [ [SEP] B-Citation [SEP] ) [ 46","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Citation [SEP] ) [ 46 [SEP] B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) ["
56,30,B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) [,"B-URL [SEP] ,",88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) [ [SEP] B-URL [SEP] ,","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-URL [SEP] , [SEP] B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) ["
56,28,B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) [,B-Developer [SEP] (,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) [ [SEP] B-Developer [SEP] (","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Developer [SEP] ( [SEP] B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) ["
56,22,B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) [,B-Version [SEP] v 1 . 0 .,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) [ [SEP] B-Version [SEP] v 1 . 0 .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Version [SEP] v 1 . 0 . [SEP] B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) ["
56,20,B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) [,B-Application [SEP] with,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) [ [SEP] B-Application [SEP] with","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Application [SEP] with [SEP] B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) ["
54,46,B-URL [SEP] RepeatMasker,B-Version [SEP] v . 4 . 0,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-URL [SEP] RepeatMasker [SEP] B-Version [SEP] v . 4 . 0","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Version [SEP] v . 4 . 0 [SEP] B-URL [SEP] RepeatMasker"
54,56,B-URL [SEP] RepeatMasker,B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) [,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-URL [SEP] RepeatMasker [SEP] B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) [","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) [ [SEP] B-URL [SEP] RepeatMasker"
54,52,B-URL [SEP] RepeatMasker,B-Developer [SEP] 7,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-URL [SEP] RepeatMasker [SEP] B-Developer [SEP] 7","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Developer [SEP] 7 [SEP] B-URL [SEP] RepeatMasker"
54,43,B-URL [SEP] RepeatMasker,B-Application [SEP] strategy,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-URL [SEP] RepeatMasker [SEP] B-Application [SEP] strategy","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Application [SEP] strategy [SEP] B-URL [SEP] RepeatMasker"
54,32,B-URL [SEP] RepeatMasker,B-Citation [SEP] ) [ 46,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-URL [SEP] RepeatMasker [SEP] B-Citation [SEP] ) [ 46","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Citation [SEP] ) [ 46 [SEP] B-URL [SEP] RepeatMasker"
54,30,B-URL [SEP] RepeatMasker,"B-URL [SEP] ,",88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-URL [SEP] RepeatMasker [SEP] B-URL [SEP] ,","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-URL [SEP] , [SEP] B-URL [SEP] RepeatMasker"
54,28,B-URL [SEP] RepeatMasker,B-Developer [SEP] (,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-URL [SEP] RepeatMasker [SEP] B-Developer [SEP] (","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Developer [SEP] ( [SEP] B-URL [SEP] RepeatMasker"
54,22,B-URL [SEP] RepeatMasker,B-Version [SEP] v 1 . 0 .,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-URL [SEP] RepeatMasker [SEP] B-Version [SEP] v 1 . 0 .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Version [SEP] v 1 . 0 . [SEP] B-URL [SEP] RepeatMasker"
54,20,B-URL [SEP] RepeatMasker,B-Application [SEP] with,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-URL [SEP] RepeatMasker [SEP] B-Application [SEP] with","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Application [SEP] with [SEP] B-URL [SEP] RepeatMasker"
52,46,B-Developer [SEP] 7,B-Version [SEP] v . 4 . 0,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Developer [SEP] 7 [SEP] B-Version [SEP] v . 4 . 0","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Version [SEP] v . 4 . 0 [SEP] B-Developer [SEP] 7"
52,56,B-Developer [SEP] 7,B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) [,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Developer [SEP] 7 [SEP] B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) [","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) [ [SEP] B-Developer [SEP] 7"
52,54,B-Developer [SEP] 7,B-URL [SEP] RepeatMasker,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Developer [SEP] 7 [SEP] B-URL [SEP] RepeatMasker","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-URL [SEP] RepeatMasker [SEP] B-Developer [SEP] 7"
52,43,B-Developer [SEP] 7,B-Application [SEP] strategy,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Developer [SEP] 7 [SEP] B-Application [SEP] strategy","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Application [SEP] strategy [SEP] B-Developer [SEP] 7"
52,32,B-Developer [SEP] 7,B-Citation [SEP] ) [ 46,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Developer [SEP] 7 [SEP] B-Citation [SEP] ) [ 46","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Citation [SEP] ) [ 46 [SEP] B-Developer [SEP] 7"
52,30,B-Developer [SEP] 7,"B-URL [SEP] ,",88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Developer [SEP] 7 [SEP] B-URL [SEP] ,","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-URL [SEP] , [SEP] B-Developer [SEP] 7"
52,28,B-Developer [SEP] 7,B-Developer [SEP] (,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Developer [SEP] 7 [SEP] B-Developer [SEP] (","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Developer [SEP] ( [SEP] B-Developer [SEP] 7"
52,22,B-Developer [SEP] 7,B-Version [SEP] v 1 . 0 .,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Developer [SEP] 7 [SEP] B-Version [SEP] v 1 . 0 .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Version [SEP] v 1 . 0 . [SEP] B-Developer [SEP] 7"
52,20,B-Developer [SEP] 7,B-Application [SEP] with,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Developer [SEP] 7 [SEP] B-Application [SEP] with","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Application [SEP] with [SEP] B-Developer [SEP] 7"
43,46,B-Application [SEP] strategy,B-Version [SEP] v . 4 . 0,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Application [SEP] strategy [SEP] B-Version [SEP] v . 4 . 0","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Version [SEP] v . 4 . 0 [SEP] B-Application [SEP] strategy"
43,56,B-Application [SEP] strategy,B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) [,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Application [SEP] strategy [SEP] B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) [","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) [ [SEP] B-Application [SEP] strategy"
43,54,B-Application [SEP] strategy,B-URL [SEP] RepeatMasker,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Application [SEP] strategy [SEP] B-URL [SEP] RepeatMasker","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-URL [SEP] RepeatMasker [SEP] B-Application [SEP] strategy"
43,52,B-Application [SEP] strategy,B-Developer [SEP] 7,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Application [SEP] strategy [SEP] B-Developer [SEP] 7","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Developer [SEP] 7 [SEP] B-Application [SEP] strategy"
43,32,B-Application [SEP] strategy,B-Citation [SEP] ) [ 46,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Application [SEP] strategy [SEP] B-Citation [SEP] ) [ 46","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Citation [SEP] ) [ 46 [SEP] B-Application [SEP] strategy"
43,30,B-Application [SEP] strategy,"B-URL [SEP] ,",88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Application [SEP] strategy [SEP] B-URL [SEP] ,","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-URL [SEP] , [SEP] B-Application [SEP] strategy"
43,28,B-Application [SEP] strategy,B-Developer [SEP] (,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Application [SEP] strategy [SEP] B-Developer [SEP] (","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Developer [SEP] ( [SEP] B-Application [SEP] strategy"
43,22,B-Application [SEP] strategy,B-Version [SEP] v 1 . 0 .,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Application [SEP] strategy [SEP] B-Version [SEP] v 1 . 0 .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Version [SEP] v 1 . 0 . [SEP] B-Application [SEP] strategy"
43,20,B-Application [SEP] strategy,B-Application [SEP] with,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Application [SEP] strategy [SEP] B-Application [SEP] with","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Application [SEP] with [SEP] B-Application [SEP] strategy"
32,46,B-Citation [SEP] ) [ 46,B-Version [SEP] v . 4 . 0,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Citation [SEP] ) [ 46 [SEP] B-Version [SEP] v . 4 . 0","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Version [SEP] v . 4 . 0 [SEP] B-Citation [SEP] ) [ 46"
32,56,B-Citation [SEP] ) [ 46,B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) [,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Citation [SEP] ) [ 46 [SEP] B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) [","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) [ [SEP] B-Citation [SEP] ) [ 46"
32,54,B-Citation [SEP] ) [ 46,B-URL [SEP] RepeatMasker,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Citation [SEP] ) [ 46 [SEP] B-URL [SEP] RepeatMasker","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-URL [SEP] RepeatMasker [SEP] B-Citation [SEP] ) [ 46"
32,52,B-Citation [SEP] ) [ 46,B-Developer [SEP] 7,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Citation [SEP] ) [ 46 [SEP] B-Developer [SEP] 7","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Developer [SEP] 7 [SEP] B-Citation [SEP] ) [ 46"
32,43,B-Citation [SEP] ) [ 46,B-Application [SEP] strategy,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Citation [SEP] ) [ 46 [SEP] B-Application [SEP] strategy","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Application [SEP] strategy [SEP] B-Citation [SEP] ) [ 46"
32,30,B-Citation [SEP] ) [ 46,"B-URL [SEP] ,",88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Citation [SEP] ) [ 46 [SEP] B-URL [SEP] ,","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-URL [SEP] , [SEP] B-Citation [SEP] ) [ 46"
32,28,B-Citation [SEP] ) [ 46,B-Developer [SEP] (,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Citation [SEP] ) [ 46 [SEP] B-Developer [SEP] (","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Developer [SEP] ( [SEP] B-Citation [SEP] ) [ 46"
32,22,B-Citation [SEP] ) [ 46,B-Version [SEP] v 1 . 0 .,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Citation [SEP] ) [ 46 [SEP] B-Version [SEP] v 1 . 0 .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Version [SEP] v 1 . 0 . [SEP] B-Citation [SEP] ) [ 46"
32,20,B-Citation [SEP] ) [ 46,B-Application [SEP] with,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Citation [SEP] ) [ 46 [SEP] B-Application [SEP] with","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Application [SEP] with [SEP] B-Citation [SEP] ) [ 46"
30,46,"B-URL [SEP] ,",B-Version [SEP] v . 4 . 0,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-URL [SEP] , [SEP] B-Version [SEP] v . 4 . 0","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Version [SEP] v . 4 . 0 [SEP] B-URL [SEP] ,"
30,56,"B-URL [SEP] ,",B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) [,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-URL [SEP] , [SEP] B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) [","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) [ [SEP] B-URL [SEP] ,"
30,54,"B-URL [SEP] ,",B-URL [SEP] RepeatMasker,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-URL [SEP] , [SEP] B-URL [SEP] RepeatMasker","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-URL [SEP] RepeatMasker [SEP] B-URL [SEP] ,"
30,52,"B-URL [SEP] ,",B-Developer [SEP] 7,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-URL [SEP] , [SEP] B-Developer [SEP] 7","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Developer [SEP] 7 [SEP] B-URL [SEP] ,"
30,43,"B-URL [SEP] ,",B-Application [SEP] strategy,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-URL [SEP] , [SEP] B-Application [SEP] strategy","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Application [SEP] strategy [SEP] B-URL [SEP] ,"
30,32,"B-URL [SEP] ,",B-Citation [SEP] ) [ 46,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-URL [SEP] , [SEP] B-Citation [SEP] ) [ 46","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Citation [SEP] ) [ 46 [SEP] B-URL [SEP] ,"
30,28,"B-URL [SEP] ,",B-Developer [SEP] (,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-URL [SEP] , [SEP] B-Developer [SEP] (","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Developer [SEP] ( [SEP] B-URL [SEP] ,"
30,22,"B-URL [SEP] ,",B-Version [SEP] v 1 . 0 .,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-URL [SEP] , [SEP] B-Version [SEP] v 1 . 0 .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Version [SEP] v 1 . 0 . [SEP] B-URL [SEP] ,"
30,20,"B-URL [SEP] ,",B-Application [SEP] with,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-URL [SEP] , [SEP] B-Application [SEP] with","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Application [SEP] with [SEP] B-URL [SEP] ,"
28,46,B-Developer [SEP] (,B-Version [SEP] v . 4 . 0,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Developer [SEP] ( [SEP] B-Version [SEP] v . 4 . 0","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Version [SEP] v . 4 . 0 [SEP] B-Developer [SEP] ("
28,56,B-Developer [SEP] (,B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) [,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Developer [SEP] ( [SEP] B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) [","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) [ [SEP] B-Developer [SEP] ("
28,54,B-Developer [SEP] (,B-URL [SEP] RepeatMasker,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Developer [SEP] ( [SEP] B-URL [SEP] RepeatMasker","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-URL [SEP] RepeatMasker [SEP] B-Developer [SEP] ("
28,52,B-Developer [SEP] (,B-Developer [SEP] 7,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Developer [SEP] ( [SEP] B-Developer [SEP] 7","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Developer [SEP] 7 [SEP] B-Developer [SEP] ("
28,43,B-Developer [SEP] (,B-Application [SEP] strategy,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Developer [SEP] ( [SEP] B-Application [SEP] strategy","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Application [SEP] strategy [SEP] B-Developer [SEP] ("
28,32,B-Developer [SEP] (,B-Citation [SEP] ) [ 46,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Developer [SEP] ( [SEP] B-Citation [SEP] ) [ 46","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Citation [SEP] ) [ 46 [SEP] B-Developer [SEP] ("
28,30,B-Developer [SEP] (,"B-URL [SEP] ,",88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Developer [SEP] ( [SEP] B-URL [SEP] ,","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-URL [SEP] , [SEP] B-Developer [SEP] ("
28,22,B-Developer [SEP] (,B-Version [SEP] v 1 . 0 .,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Developer [SEP] ( [SEP] B-Version [SEP] v 1 . 0 .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Version [SEP] v 1 . 0 . [SEP] B-Developer [SEP] ("
28,20,B-Developer [SEP] (,B-Application [SEP] with,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Developer [SEP] ( [SEP] B-Application [SEP] with","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Application [SEP] with [SEP] B-Developer [SEP] ("
22,46,B-Version [SEP] v 1 . 0 .,B-Version [SEP] v . 4 . 0,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Version [SEP] v 1 . 0 . [SEP] B-Version [SEP] v . 4 . 0","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Version [SEP] v . 4 . 0 [SEP] B-Version [SEP] v 1 . 0 ."
22,56,B-Version [SEP] v 1 . 0 .,B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) [,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Version [SEP] v 1 . 0 . [SEP] B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) [","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) [ [SEP] B-Version [SEP] v 1 . 0 ."
22,54,B-Version [SEP] v 1 . 0 .,B-URL [SEP] RepeatMasker,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Version [SEP] v 1 . 0 . [SEP] B-URL [SEP] RepeatMasker","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-URL [SEP] RepeatMasker [SEP] B-Version [SEP] v 1 . 0 ."
22,52,B-Version [SEP] v 1 . 0 .,B-Developer [SEP] 7,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Version [SEP] v 1 . 0 . [SEP] B-Developer [SEP] 7","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Developer [SEP] 7 [SEP] B-Version [SEP] v 1 . 0 ."
22,43,B-Version [SEP] v 1 . 0 .,B-Application [SEP] strategy,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Version [SEP] v 1 . 0 . [SEP] B-Application [SEP] strategy","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Application [SEP] strategy [SEP] B-Version [SEP] v 1 . 0 ."
22,32,B-Version [SEP] v 1 . 0 .,B-Citation [SEP] ) [ 46,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Version [SEP] v 1 . 0 . [SEP] B-Citation [SEP] ) [ 46","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Citation [SEP] ) [ 46 [SEP] B-Version [SEP] v 1 . 0 ."
22,30,B-Version [SEP] v 1 . 0 .,"B-URL [SEP] ,",88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Version [SEP] v 1 . 0 . [SEP] B-URL [SEP] ,","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-URL [SEP] , [SEP] B-Version [SEP] v 1 . 0 ."
22,28,B-Version [SEP] v 1 . 0 .,B-Developer [SEP] (,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Version [SEP] v 1 . 0 . [SEP] B-Developer [SEP] (","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Developer [SEP] ( [SEP] B-Version [SEP] v 1 . 0 ."
22,20,B-Version [SEP] v 1 . 0 .,B-Application [SEP] with,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Version [SEP] v 1 . 0 . [SEP] B-Application [SEP] with","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Application [SEP] with [SEP] B-Version [SEP] v 1 . 0 ."
20,46,B-Application [SEP] with,B-Version [SEP] v . 4 . 0,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Application [SEP] with [SEP] B-Version [SEP] v . 4 . 0","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Version [SEP] v . 4 . 0 [SEP] B-Application [SEP] with"
20,56,B-Application [SEP] with,B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) [,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Application [SEP] with [SEP] B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) [","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Citation [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 ) [ [SEP] B-Application [SEP] with"
20,54,B-Application [SEP] with,B-URL [SEP] RepeatMasker,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Application [SEP] with [SEP] B-URL [SEP] RepeatMasker","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-URL [SEP] RepeatMasker [SEP] B-Application [SEP] with"
20,52,B-Application [SEP] with,B-Developer [SEP] 7,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Application [SEP] with [SEP] B-Developer [SEP] 7","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Developer [SEP] 7 [SEP] B-Application [SEP] with"
20,43,B-Application [SEP] with,B-Application [SEP] strategy,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Application [SEP] with [SEP] B-Application [SEP] strategy","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Application [SEP] strategy [SEP] B-Application [SEP] with"
20,32,B-Application [SEP] with,B-Citation [SEP] ) [ 46,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Application [SEP] with [SEP] B-Citation [SEP] ) [ 46","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Citation [SEP] ) [ 46 [SEP] B-Application [SEP] with"
20,30,B-Application [SEP] with,"B-URL [SEP] ,",88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Application [SEP] with [SEP] B-URL [SEP] ,","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-URL [SEP] , [SEP] B-Application [SEP] with"
20,28,B-Application [SEP] with,B-Developer [SEP] (,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Application [SEP] with [SEP] B-Developer [SEP] (","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Developer [SEP] ( [SEP] B-Application [SEP] with"
20,22,B-Application [SEP] with,B-Version [SEP] v 1 . 0 .,88,"We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Application [SEP] with [SEP] B-Version [SEP] v 1 . 0 .","We analyzed the distribution of repetitive sequences in the genome of D . silvatica , using either a de novo with RepeatModeler v 1 . 0 . 11 ( RepeatModeler , https://scicrunch.org/resolver/RRID:SCR_015027 ) [ 46 ] , or a database - guided search strategy with RepeatMasker v . 4 . 0 . 7 ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 47 ] . [SEP] B-Version [SEP] v 1 . 0 . [SEP] B-Application [SEP] with"
21,23,B-Application [SEP] RepeatModeler,B-Version [SEP] 1 . 0 . 11,89,"We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] .","We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] . [SEP] B-Application [SEP] RepeatModeler [SEP] B-Version [SEP] 1 . 0 . 11","We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] . [SEP] B-Version [SEP] 1 . 0 . 11 [SEP] B-Application [SEP] RepeatModeler"
21,28,B-Application [SEP] RepeatModeler,B-Citation [SEP] [ 46 ],89,"We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] .","We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] . [SEP] B-Application [SEP] RepeatModeler [SEP] B-Citation [SEP] [ 46 ]","We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] . [SEP] B-Citation [SEP] [ 46 ] [SEP] B-Application [SEP] RepeatModeler"
21,52,B-Application [SEP] RepeatModeler,B-Application [SEP] RepBase,89,"We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] .","We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] . [SEP] B-Application [SEP] RepeatModeler [SEP] B-Application [SEP] RepBase","We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] . [SEP] B-Application [SEP] RepBase [SEP] B-Application [SEP] RepeatModeler"
21,57,B-Application [SEP] RepeatModeler,B-Citation [SEP] [ 49,89,"We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] .","We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] . [SEP] B-Application [SEP] RepeatModeler [SEP] B-Citation [SEP] [ 49","We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] . [SEP] B-Citation [SEP] [ 49 [SEP] B-Application [SEP] RepeatModeler"
23,21,B-Version [SEP] 1 . 0 . 11,B-Application [SEP] RepeatModeler,89,"We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] .","We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] . [SEP] B-Version [SEP] 1 . 0 . 11 [SEP] B-Application [SEP] RepeatModeler","We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] . [SEP] B-Application [SEP] RepeatModeler [SEP] B-Version [SEP] 1 . 0 . 11"
23,28,B-Version [SEP] 1 . 0 . 11,B-Citation [SEP] [ 46 ],89,"We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] .","We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] . [SEP] B-Version [SEP] 1 . 0 . 11 [SEP] B-Citation [SEP] [ 46 ]","We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] . [SEP] B-Citation [SEP] [ 46 ] [SEP] B-Version [SEP] 1 . 0 . 11"
23,52,B-Version [SEP] 1 . 0 . 11,B-Application [SEP] RepBase,89,"We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] .","We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] . [SEP] B-Version [SEP] 1 . 0 . 11 [SEP] B-Application [SEP] RepBase","We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] . [SEP] B-Application [SEP] RepBase [SEP] B-Version [SEP] 1 . 0 . 11"
23,57,B-Version [SEP] 1 . 0 . 11,B-Citation [SEP] [ 49,89,"We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] .","We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] . [SEP] B-Version [SEP] 1 . 0 . 11 [SEP] B-Citation [SEP] [ 49","We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] . [SEP] B-Citation [SEP] [ 49 [SEP] B-Version [SEP] 1 . 0 . 11"
28,21,B-Citation [SEP] [ 46 ],B-Application [SEP] RepeatModeler,89,"We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] .","We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] . [SEP] B-Citation [SEP] [ 46 ] [SEP] B-Application [SEP] RepeatModeler","We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] . [SEP] B-Application [SEP] RepeatModeler [SEP] B-Citation [SEP] [ 46 ]"
28,23,B-Citation [SEP] [ 46 ],B-Version [SEP] 1 . 0 . 11,89,"We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] .","We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] . [SEP] B-Citation [SEP] [ 46 ] [SEP] B-Version [SEP] 1 . 0 . 11","We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] . [SEP] B-Version [SEP] 1 . 0 . 11 [SEP] B-Citation [SEP] [ 46 ]"
28,52,B-Citation [SEP] [ 46 ],B-Application [SEP] RepBase,89,"We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] .","We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] . [SEP] B-Citation [SEP] [ 46 ] [SEP] B-Application [SEP] RepBase","We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] . [SEP] B-Application [SEP] RepBase [SEP] B-Citation [SEP] [ 46 ]"
28,57,B-Citation [SEP] [ 46 ],B-Citation [SEP] [ 49,89,"We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] .","We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] . [SEP] B-Citation [SEP] [ 46 ] [SEP] B-Citation [SEP] [ 49","We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] . [SEP] B-Citation [SEP] [ 49 [SEP] B-Citation [SEP] [ 46 ]"
52,21,B-Application [SEP] RepBase,B-Application [SEP] RepeatModeler,89,"We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] .","We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] . [SEP] B-Application [SEP] RepBase [SEP] B-Application [SEP] RepeatModeler","We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] . [SEP] B-Application [SEP] RepeatModeler [SEP] B-Application [SEP] RepBase"
52,23,B-Application [SEP] RepBase,B-Version [SEP] 1 . 0 . 11,89,"We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] .","We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] . [SEP] B-Application [SEP] RepBase [SEP] B-Version [SEP] 1 . 0 . 11","We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] . [SEP] B-Version [SEP] 1 . 0 . 11 [SEP] B-Application [SEP] RepBase"
52,28,B-Application [SEP] RepBase,B-Citation [SEP] [ 46 ],89,"We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] .","We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] . [SEP] B-Application [SEP] RepBase [SEP] B-Citation [SEP] [ 46 ]","We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] . [SEP] B-Citation [SEP] [ 46 ] [SEP] B-Application [SEP] RepBase"
52,57,B-Application [SEP] RepBase,B-Citation [SEP] [ 49,89,"We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] .","We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] . [SEP] B-Application [SEP] RepBase [SEP] B-Citation [SEP] [ 49","We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] . [SEP] B-Citation [SEP] [ 49 [SEP] B-Application [SEP] RepBase"
57,21,B-Citation [SEP] [ 49,B-Application [SEP] RepeatModeler,89,"We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] .","We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] . [SEP] B-Citation [SEP] [ 49 [SEP] B-Application [SEP] RepeatModeler","We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] . [SEP] B-Application [SEP] RepeatModeler [SEP] B-Citation [SEP] [ 49"
57,23,B-Citation [SEP] [ 49,B-Version [SEP] 1 . 0 . 11,89,"We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] .","We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] . [SEP] B-Citation [SEP] [ 49 [SEP] B-Version [SEP] 1 . 0 . 11","We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] . [SEP] B-Version [SEP] 1 . 0 . 11 [SEP] B-Citation [SEP] [ 49"
57,28,B-Citation [SEP] [ 49,B-Citation [SEP] [ 46 ],89,"We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] .","We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] . [SEP] B-Citation [SEP] [ 49 [SEP] B-Citation [SEP] [ 46 ]","We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] . [SEP] B-Citation [SEP] [ 46 ] [SEP] B-Citation [SEP] [ 49"
57,52,B-Citation [SEP] [ 49,B-Application [SEP] RepBase,89,"We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] .","We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] . [SEP] B-Citation [SEP] [ 49 [SEP] B-Application [SEP] RepBase","We used 3 different databases of repetitive sequences , ( i ) D . silvatica - specific repetitive elements generated with RepeatModeler v 1 . 0 . 11 [ 46 ] , ( ii ) the Dfam _ Consensus [ 48 ] ( version 20170127 ) , and ( ii ) the RepBase ( version 20170127 ) [ 49 , 50 ] . [SEP] B-Application [SEP] RepBase [SEP] B-Citation [SEP] [ 49"
41,39,B-Citation [SEP] [ 52 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Citation [SEP] [ 52 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048 [SEP] B-Citation [SEP] [ 52 ]"
41,37,B-Citation [SEP] [ 52 ],B-Developer [SEP] Trinity,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Citation [SEP] [ 52 ] [SEP] B-Developer [SEP] Trinity","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Developer [SEP] Trinity [SEP] B-Citation [SEP] [ 52 ]"
41,30,B-Citation [SEP] [ 52 ],B-Version [SEP] 2 . 4 . 0 .,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Citation [SEP] [ 52 ] [SEP] B-Version [SEP] 2 . 4 . 0 .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Version [SEP] 2 . 4 . 0 . [SEP] B-Citation [SEP] [ 52 ]"
41,28,B-Citation [SEP] [ 52 ],B-Application [SEP] Trinity,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Citation [SEP] [ 52 ] [SEP] B-Application [SEP] Trinity","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Application [SEP] Trinity [SEP] B-Citation [SEP] [ 52 ]"
41,14,B-Citation [SEP] [ 52 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Citation [SEP] [ 52 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530 [SEP] B-Citation [SEP] [ 52 ]"
41,11,B-Citation [SEP] [ 52 ],B-Developer [SEP] HISAT 2,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Citation [SEP] [ 52 ] [SEP] B-Developer [SEP] HISAT 2","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Developer [SEP] HISAT 2 [SEP] B-Citation [SEP] [ 52 ]"
41,5,B-Citation [SEP] [ 52 ],B-Version [SEP] 2 . 1 . 0,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Citation [SEP] [ 52 ] [SEP] B-Version [SEP] 2 . 1 . 0","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Version [SEP] 2 . 1 . 0 [SEP] B-Citation [SEP] [ 52 ]"
41,2,B-Citation [SEP] [ 52 ],B-Application [SEP] HISAT 2,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Citation [SEP] [ 52 ] [SEP] B-Application [SEP] HISAT 2","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Application [SEP] HISAT 2 [SEP] B-Citation [SEP] [ 52 ]"
41,16,B-Citation [SEP] [ 52 ],B-Citation [SEP] [ 51 ],90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Citation [SEP] [ 52 ] [SEP] B-Citation [SEP] [ 51 ]","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Citation [SEP] [ 51 ] [SEP] B-Citation [SEP] [ 52 ]"
39,41,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048,B-Citation [SEP] [ 52 ],90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048 [SEP] B-Citation [SEP] [ 52 ]","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Citation [SEP] [ 52 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048"
39,37,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048,B-Developer [SEP] Trinity,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048 [SEP] B-Developer [SEP] Trinity","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Developer [SEP] Trinity [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048"
39,30,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048,B-Version [SEP] 2 . 4 . 0 .,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048 [SEP] B-Version [SEP] 2 . 4 . 0 .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Version [SEP] 2 . 4 . 0 . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048"
39,28,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048,B-Application [SEP] Trinity,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048 [SEP] B-Application [SEP] Trinity","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Application [SEP] Trinity [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048"
39,14,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048"
39,11,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048,B-Developer [SEP] HISAT 2,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048 [SEP] B-Developer [SEP] HISAT 2","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Developer [SEP] HISAT 2 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048"
39,5,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048,B-Version [SEP] 2 . 1 . 0,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048 [SEP] B-Version [SEP] 2 . 1 . 0","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Version [SEP] 2 . 1 . 0 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048"
39,2,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048,B-Application [SEP] HISAT 2,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048 [SEP] B-Application [SEP] HISAT 2","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Application [SEP] HISAT 2 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048"
39,16,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048,B-Citation [SEP] [ 51 ],90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048 [SEP] B-Citation [SEP] [ 51 ]","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Citation [SEP] [ 51 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048"
37,41,B-Developer [SEP] Trinity,B-Citation [SEP] [ 52 ],90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Developer [SEP] Trinity [SEP] B-Citation [SEP] [ 52 ]","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Citation [SEP] [ 52 ] [SEP] B-Developer [SEP] Trinity"
37,39,B-Developer [SEP] Trinity,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Developer [SEP] Trinity [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048 [SEP] B-Developer [SEP] Trinity"
37,30,B-Developer [SEP] Trinity,B-Version [SEP] 2 . 4 . 0 .,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Developer [SEP] Trinity [SEP] B-Version [SEP] 2 . 4 . 0 .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Version [SEP] 2 . 4 . 0 . [SEP] B-Developer [SEP] Trinity"
37,28,B-Developer [SEP] Trinity,B-Application [SEP] Trinity,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Developer [SEP] Trinity [SEP] B-Application [SEP] Trinity","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Application [SEP] Trinity [SEP] B-Developer [SEP] Trinity"
37,14,B-Developer [SEP] Trinity,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Developer [SEP] Trinity [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530 [SEP] B-Developer [SEP] Trinity"
37,11,B-Developer [SEP] Trinity,B-Developer [SEP] HISAT 2,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Developer [SEP] Trinity [SEP] B-Developer [SEP] HISAT 2","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Developer [SEP] HISAT 2 [SEP] B-Developer [SEP] Trinity"
37,5,B-Developer [SEP] Trinity,B-Version [SEP] 2 . 1 . 0,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Developer [SEP] Trinity [SEP] B-Version [SEP] 2 . 1 . 0","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Version [SEP] 2 . 1 . 0 [SEP] B-Developer [SEP] Trinity"
37,2,B-Developer [SEP] Trinity,B-Application [SEP] HISAT 2,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Developer [SEP] Trinity [SEP] B-Application [SEP] HISAT 2","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Application [SEP] HISAT 2 [SEP] B-Developer [SEP] Trinity"
37,16,B-Developer [SEP] Trinity,B-Citation [SEP] [ 51 ],90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Developer [SEP] Trinity [SEP] B-Citation [SEP] [ 51 ]","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Citation [SEP] [ 51 ] [SEP] B-Developer [SEP] Trinity"
30,41,B-Version [SEP] 2 . 4 . 0 .,B-Citation [SEP] [ 52 ],90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Version [SEP] 2 . 4 . 0 . [SEP] B-Citation [SEP] [ 52 ]","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Citation [SEP] [ 52 ] [SEP] B-Version [SEP] 2 . 4 . 0 ."
30,39,B-Version [SEP] 2 . 4 . 0 .,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Version [SEP] 2 . 4 . 0 . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048 [SEP] B-Version [SEP] 2 . 4 . 0 ."
30,37,B-Version [SEP] 2 . 4 . 0 .,B-Developer [SEP] Trinity,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Version [SEP] 2 . 4 . 0 . [SEP] B-Developer [SEP] Trinity","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Developer [SEP] Trinity [SEP] B-Version [SEP] 2 . 4 . 0 ."
30,28,B-Version [SEP] 2 . 4 . 0 .,B-Application [SEP] Trinity,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Version [SEP] 2 . 4 . 0 . [SEP] B-Application [SEP] Trinity","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Application [SEP] Trinity [SEP] B-Version [SEP] 2 . 4 . 0 ."
30,14,B-Version [SEP] 2 . 4 . 0 .,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Version [SEP] 2 . 4 . 0 . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530 [SEP] B-Version [SEP] 2 . 4 . 0 ."
30,11,B-Version [SEP] 2 . 4 . 0 .,B-Developer [SEP] HISAT 2,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Version [SEP] 2 . 4 . 0 . [SEP] B-Developer [SEP] HISAT 2","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Developer [SEP] HISAT 2 [SEP] B-Version [SEP] 2 . 4 . 0 ."
30,5,B-Version [SEP] 2 . 4 . 0 .,B-Version [SEP] 2 . 1 . 0,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Version [SEP] 2 . 4 . 0 . [SEP] B-Version [SEP] 2 . 1 . 0","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Version [SEP] 2 . 1 . 0 [SEP] B-Version [SEP] 2 . 4 . 0 ."
30,2,B-Version [SEP] 2 . 4 . 0 .,B-Application [SEP] HISAT 2,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Version [SEP] 2 . 4 . 0 . [SEP] B-Application [SEP] HISAT 2","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Application [SEP] HISAT 2 [SEP] B-Version [SEP] 2 . 4 . 0 ."
30,16,B-Version [SEP] 2 . 4 . 0 .,B-Citation [SEP] [ 51 ],90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Version [SEP] 2 . 4 . 0 . [SEP] B-Citation [SEP] [ 51 ]","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Citation [SEP] [ 51 ] [SEP] B-Version [SEP] 2 . 4 . 0 ."
28,41,B-Application [SEP] Trinity,B-Citation [SEP] [ 52 ],90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Application [SEP] Trinity [SEP] B-Citation [SEP] [ 52 ]","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Citation [SEP] [ 52 ] [SEP] B-Application [SEP] Trinity"
28,39,B-Application [SEP] Trinity,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Application [SEP] Trinity [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048 [SEP] B-Application [SEP] Trinity"
28,37,B-Application [SEP] Trinity,B-Developer [SEP] Trinity,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Application [SEP] Trinity [SEP] B-Developer [SEP] Trinity","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Developer [SEP] Trinity [SEP] B-Application [SEP] Trinity"
28,30,B-Application [SEP] Trinity,B-Version [SEP] 2 . 4 . 0 .,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Application [SEP] Trinity [SEP] B-Version [SEP] 2 . 4 . 0 .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Version [SEP] 2 . 4 . 0 . [SEP] B-Application [SEP] Trinity"
28,14,B-Application [SEP] Trinity,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Application [SEP] Trinity [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530 [SEP] B-Application [SEP] Trinity"
28,11,B-Application [SEP] Trinity,B-Developer [SEP] HISAT 2,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Application [SEP] Trinity [SEP] B-Developer [SEP] HISAT 2","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Developer [SEP] HISAT 2 [SEP] B-Application [SEP] Trinity"
28,5,B-Application [SEP] Trinity,B-Version [SEP] 2 . 1 . 0,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Application [SEP] Trinity [SEP] B-Version [SEP] 2 . 1 . 0","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Version [SEP] 2 . 1 . 0 [SEP] B-Application [SEP] Trinity"
28,2,B-Application [SEP] Trinity,B-Application [SEP] HISAT 2,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Application [SEP] Trinity [SEP] B-Application [SEP] HISAT 2","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Application [SEP] HISAT 2 [SEP] B-Application [SEP] Trinity"
28,16,B-Application [SEP] Trinity,B-Citation [SEP] [ 51 ],90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Application [SEP] Trinity [SEP] B-Citation [SEP] [ 51 ]","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Citation [SEP] [ 51 ] [SEP] B-Application [SEP] Trinity"
14,41,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530,B-Citation [SEP] [ 52 ],90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530 [SEP] B-Citation [SEP] [ 52 ]","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Citation [SEP] [ 52 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530"
14,39,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530"
14,37,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530,B-Developer [SEP] Trinity,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530 [SEP] B-Developer [SEP] Trinity","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Developer [SEP] Trinity [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530"
14,30,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530,B-Version [SEP] 2 . 4 . 0 .,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530 [SEP] B-Version [SEP] 2 . 4 . 0 .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Version [SEP] 2 . 4 . 0 . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530"
14,28,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530,B-Application [SEP] Trinity,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530 [SEP] B-Application [SEP] Trinity","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Application [SEP] Trinity [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530"
14,11,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530,B-Developer [SEP] HISAT 2,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530 [SEP] B-Developer [SEP] HISAT 2","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Developer [SEP] HISAT 2 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530"
14,5,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530,B-Version [SEP] 2 . 1 . 0,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530 [SEP] B-Version [SEP] 2 . 1 . 0","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Version [SEP] 2 . 1 . 0 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530"
14,2,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530,B-Application [SEP] HISAT 2,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530 [SEP] B-Application [SEP] HISAT 2","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Application [SEP] HISAT 2 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530"
14,16,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530,B-Citation [SEP] [ 51 ],90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530 [SEP] B-Citation [SEP] [ 51 ]","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Citation [SEP] [ 51 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530"
11,41,B-Developer [SEP] HISAT 2,B-Citation [SEP] [ 52 ],90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Developer [SEP] HISAT 2 [SEP] B-Citation [SEP] [ 52 ]","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Citation [SEP] [ 52 ] [SEP] B-Developer [SEP] HISAT 2"
11,39,B-Developer [SEP] HISAT 2,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Developer [SEP] HISAT 2 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048 [SEP] B-Developer [SEP] HISAT 2"
11,37,B-Developer [SEP] HISAT 2,B-Developer [SEP] Trinity,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Developer [SEP] HISAT 2 [SEP] B-Developer [SEP] Trinity","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Developer [SEP] Trinity [SEP] B-Developer [SEP] HISAT 2"
11,30,B-Developer [SEP] HISAT 2,B-Version [SEP] 2 . 4 . 0 .,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Developer [SEP] HISAT 2 [SEP] B-Version [SEP] 2 . 4 . 0 .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Version [SEP] 2 . 4 . 0 . [SEP] B-Developer [SEP] HISAT 2"
11,28,B-Developer [SEP] HISAT 2,B-Application [SEP] Trinity,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Developer [SEP] HISAT 2 [SEP] B-Application [SEP] Trinity","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Application [SEP] Trinity [SEP] B-Developer [SEP] HISAT 2"
11,14,B-Developer [SEP] HISAT 2,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Developer [SEP] HISAT 2 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530 [SEP] B-Developer [SEP] HISAT 2"
11,5,B-Developer [SEP] HISAT 2,B-Version [SEP] 2 . 1 . 0,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Developer [SEP] HISAT 2 [SEP] B-Version [SEP] 2 . 1 . 0","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Version [SEP] 2 . 1 . 0 [SEP] B-Developer [SEP] HISAT 2"
11,2,B-Developer [SEP] HISAT 2,B-Application [SEP] HISAT 2,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Developer [SEP] HISAT 2 [SEP] B-Application [SEP] HISAT 2","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Application [SEP] HISAT 2 [SEP] B-Developer [SEP] HISAT 2"
11,16,B-Developer [SEP] HISAT 2,B-Citation [SEP] [ 51 ],90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Developer [SEP] HISAT 2 [SEP] B-Citation [SEP] [ 51 ]","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Citation [SEP] [ 51 ] [SEP] B-Developer [SEP] HISAT 2"
5,41,B-Version [SEP] 2 . 1 . 0,B-Citation [SEP] [ 52 ],90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Version [SEP] 2 . 1 . 0 [SEP] B-Citation [SEP] [ 52 ]","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Citation [SEP] [ 52 ] [SEP] B-Version [SEP] 2 . 1 . 0"
5,39,B-Version [SEP] 2 . 1 . 0,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Version [SEP] 2 . 1 . 0 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048 [SEP] B-Version [SEP] 2 . 1 . 0"
5,37,B-Version [SEP] 2 . 1 . 0,B-Developer [SEP] Trinity,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Version [SEP] 2 . 1 . 0 [SEP] B-Developer [SEP] Trinity","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Developer [SEP] Trinity [SEP] B-Version [SEP] 2 . 1 . 0"
5,30,B-Version [SEP] 2 . 1 . 0,B-Version [SEP] 2 . 4 . 0 .,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Version [SEP] 2 . 1 . 0 [SEP] B-Version [SEP] 2 . 4 . 0 .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Version [SEP] 2 . 4 . 0 . [SEP] B-Version [SEP] 2 . 1 . 0"
5,28,B-Version [SEP] 2 . 1 . 0,B-Application [SEP] Trinity,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Version [SEP] 2 . 1 . 0 [SEP] B-Application [SEP] Trinity","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Application [SEP] Trinity [SEP] B-Version [SEP] 2 . 1 . 0"
5,14,B-Version [SEP] 2 . 1 . 0,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Version [SEP] 2 . 1 . 0 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530 [SEP] B-Version [SEP] 2 . 1 . 0"
5,11,B-Version [SEP] 2 . 1 . 0,B-Developer [SEP] HISAT 2,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Version [SEP] 2 . 1 . 0 [SEP] B-Developer [SEP] HISAT 2","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Developer [SEP] HISAT 2 [SEP] B-Version [SEP] 2 . 1 . 0"
5,2,B-Version [SEP] 2 . 1 . 0,B-Application [SEP] HISAT 2,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Version [SEP] 2 . 1 . 0 [SEP] B-Application [SEP] HISAT 2","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Application [SEP] HISAT 2 [SEP] B-Version [SEP] 2 . 1 . 0"
5,16,B-Version [SEP] 2 . 1 . 0,B-Citation [SEP] [ 51 ],90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Version [SEP] 2 . 1 . 0 [SEP] B-Citation [SEP] [ 51 ]","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Citation [SEP] [ 51 ] [SEP] B-Version [SEP] 2 . 1 . 0"
2,41,B-Application [SEP] HISAT 2,B-Citation [SEP] [ 52 ],90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Application [SEP] HISAT 2 [SEP] B-Citation [SEP] [ 52 ]","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Citation [SEP] [ 52 ] [SEP] B-Application [SEP] HISAT 2"
2,39,B-Application [SEP] HISAT 2,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Application [SEP] HISAT 2 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048 [SEP] B-Application [SEP] HISAT 2"
2,37,B-Application [SEP] HISAT 2,B-Developer [SEP] Trinity,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Application [SEP] HISAT 2 [SEP] B-Developer [SEP] Trinity","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Developer [SEP] Trinity [SEP] B-Application [SEP] HISAT 2"
2,30,B-Application [SEP] HISAT 2,B-Version [SEP] 2 . 4 . 0 .,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Application [SEP] HISAT 2 [SEP] B-Version [SEP] 2 . 4 . 0 .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Version [SEP] 2 . 4 . 0 . [SEP] B-Application [SEP] HISAT 2"
2,28,B-Application [SEP] HISAT 2,B-Application [SEP] Trinity,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Application [SEP] HISAT 2 [SEP] B-Application [SEP] Trinity","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Application [SEP] Trinity [SEP] B-Application [SEP] HISAT 2"
2,14,B-Application [SEP] HISAT 2,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Application [SEP] HISAT 2 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530 [SEP] B-Application [SEP] HISAT 2"
2,11,B-Application [SEP] HISAT 2,B-Developer [SEP] HISAT 2,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Application [SEP] HISAT 2 [SEP] B-Developer [SEP] HISAT 2","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Developer [SEP] HISAT 2 [SEP] B-Application [SEP] HISAT 2"
2,5,B-Application [SEP] HISAT 2,B-Version [SEP] 2 . 1 . 0,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Application [SEP] HISAT 2 [SEP] B-Version [SEP] 2 . 1 . 0","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Version [SEP] 2 . 1 . 0 [SEP] B-Application [SEP] HISAT 2"
2,16,B-Application [SEP] HISAT 2,B-Citation [SEP] [ 51 ],90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Application [SEP] HISAT 2 [SEP] B-Citation [SEP] [ 51 ]","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Citation [SEP] [ 51 ] [SEP] B-Application [SEP] HISAT 2"
16,41,B-Citation [SEP] [ 51 ],B-Citation [SEP] [ 52 ],90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Citation [SEP] [ 51 ] [SEP] B-Citation [SEP] [ 52 ]","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Citation [SEP] [ 52 ] [SEP] B-Citation [SEP] [ 51 ]"
16,39,B-Citation [SEP] [ 51 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Citation [SEP] [ 51 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013048 [SEP] B-Citation [SEP] [ 51 ]"
16,37,B-Citation [SEP] [ 51 ],B-Developer [SEP] Trinity,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Citation [SEP] [ 51 ] [SEP] B-Developer [SEP] Trinity","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Developer [SEP] Trinity [SEP] B-Citation [SEP] [ 51 ]"
16,30,B-Citation [SEP] [ 51 ],B-Version [SEP] 2 . 4 . 0 .,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Citation [SEP] [ 51 ] [SEP] B-Version [SEP] 2 . 4 . 0 .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Version [SEP] 2 . 4 . 0 . [SEP] B-Citation [SEP] [ 51 ]"
16,28,B-Citation [SEP] [ 51 ],B-Application [SEP] Trinity,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Citation [SEP] [ 51 ] [SEP] B-Application [SEP] Trinity","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Application [SEP] Trinity [SEP] B-Citation [SEP] [ 51 ]"
16,14,B-Citation [SEP] [ 51 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Citation [SEP] [ 51 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015530 [SEP] B-Citation [SEP] [ 51 ]"
16,11,B-Citation [SEP] [ 51 ],B-Developer [SEP] HISAT 2,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Citation [SEP] [ 51 ] [SEP] B-Developer [SEP] HISAT 2","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Developer [SEP] HISAT 2 [SEP] B-Citation [SEP] [ 51 ]"
16,5,B-Citation [SEP] [ 51 ],B-Version [SEP] 2 . 1 . 0,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Citation [SEP] [ 51 ] [SEP] B-Version [SEP] 2 . 1 . 0","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Version [SEP] 2 . 1 . 0 [SEP] B-Citation [SEP] [ 51 ]"
16,2,B-Citation [SEP] [ 51 ],B-Application [SEP] HISAT 2,90,"We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) .","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Citation [SEP] [ 51 ] [SEP] B-Application [SEP] HISAT 2","We used HISAT 2 v 2 . 1 . 0 ( HISAT 2 , https://scicrunch.org/resolver/RRID:SCR_015530 ) [ 51 ] to map the RNAseq reads to the reference and Trinity v 2 . 4 . 0 . ( Trinity , https://scicrunch.org/resolver/RRID:SCR_013048 ) [ 52 ] ( genome - guided bam , max intron = 50 kb , min coverage = 3 ) to assemble the transcriptome ( named "" Dsil - RefGuided transcriptome "" ; Supplementary Table S1 - 10 ) . [SEP] B-Application [SEP] HISAT 2 [SEP] B-Citation [SEP] [ 51 ]"
17,3,B-Citation [SEP] [ 53 ],B-Application [SEP] MAKER 2,91,"We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources .","We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources . [SEP] B-Citation [SEP] [ 53 ] [SEP] B-Application [SEP] MAKER 2","We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources . [SEP] B-Application [SEP] MAKER 2 [SEP] B-Citation [SEP] [ 53 ]"
17,6,B-Citation [SEP] [ 53 ],B-Version [SEP] 2 . 31 . 9,91,"We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources .","We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources . [SEP] B-Citation [SEP] [ 53 ] [SEP] B-Version [SEP] 2 . 31 . 9","We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources . [SEP] B-Version [SEP] 2 . 31 . 9 [SEP] B-Citation [SEP] [ 53 ]"
17,12,B-Citation [SEP] [ 53 ],B-Application [SEP] MAKER 2,91,"We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources .","We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources . [SEP] B-Citation [SEP] [ 53 ] [SEP] B-Application [SEP] MAKER 2","We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources . [SEP] B-Application [SEP] MAKER 2 [SEP] B-Citation [SEP] [ 53 ]"
17,15,B-Citation [SEP] [ 53 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005309,91,"We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources .","We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources . [SEP] B-Citation [SEP] [ 53 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005309","We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005309 [SEP] B-Citation [SEP] [ 53 ]"
3,17,B-Application [SEP] MAKER 2,B-Citation [SEP] [ 53 ],91,"We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources .","We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources . [SEP] B-Application [SEP] MAKER 2 [SEP] B-Citation [SEP] [ 53 ]","We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources . [SEP] B-Citation [SEP] [ 53 ] [SEP] B-Application [SEP] MAKER 2"
3,6,B-Application [SEP] MAKER 2,B-Version [SEP] 2 . 31 . 9,91,"We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources .","We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources . [SEP] B-Application [SEP] MAKER 2 [SEP] B-Version [SEP] 2 . 31 . 9","We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources . [SEP] B-Version [SEP] 2 . 31 . 9 [SEP] B-Application [SEP] MAKER 2"
3,15,B-Application [SEP] MAKER 2,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005309,91,"We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources .","We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources . [SEP] B-Application [SEP] MAKER 2 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005309","We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005309 [SEP] B-Application [SEP] MAKER 2"
6,17,B-Version [SEP] 2 . 31 . 9,B-Citation [SEP] [ 53 ],91,"We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources .","We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources . [SEP] B-Version [SEP] 2 . 31 . 9 [SEP] B-Citation [SEP] [ 53 ]","We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources . [SEP] B-Citation [SEP] [ 53 ] [SEP] B-Version [SEP] 2 . 31 . 9"
6,3,B-Version [SEP] 2 . 31 . 9,B-Application [SEP] MAKER 2,91,"We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources .","We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources . [SEP] B-Version [SEP] 2 . 31 . 9 [SEP] B-Application [SEP] MAKER 2","We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources . [SEP] B-Application [SEP] MAKER 2 [SEP] B-Version [SEP] 2 . 31 . 9"
6,12,B-Version [SEP] 2 . 31 . 9,B-Application [SEP] MAKER 2,91,"We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources .","We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources . [SEP] B-Version [SEP] 2 . 31 . 9 [SEP] B-Application [SEP] MAKER 2","We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources . [SEP] B-Application [SEP] MAKER 2 [SEP] B-Version [SEP] 2 . 31 . 9"
6,15,B-Version [SEP] 2 . 31 . 9,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005309,91,"We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources .","We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources . [SEP] B-Version [SEP] 2 . 31 . 9 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005309","We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005309 [SEP] B-Version [SEP] 2 . 31 . 9"
12,17,B-Application [SEP] MAKER 2,B-Citation [SEP] [ 53 ],91,"We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources .","We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources . [SEP] B-Application [SEP] MAKER 2 [SEP] B-Citation [SEP] [ 53 ]","We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources . [SEP] B-Citation [SEP] [ 53 ] [SEP] B-Application [SEP] MAKER 2"
12,6,B-Application [SEP] MAKER 2,B-Version [SEP] 2 . 31 . 9,91,"We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources .","We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources . [SEP] B-Application [SEP] MAKER 2 [SEP] B-Version [SEP] 2 . 31 . 9","We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources . [SEP] B-Version [SEP] 2 . 31 . 9 [SEP] B-Application [SEP] MAKER 2"
12,15,B-Application [SEP] MAKER 2,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005309,91,"We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources .","We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources . [SEP] B-Application [SEP] MAKER 2 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005309","We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005309 [SEP] B-Application [SEP] MAKER 2"
15,17,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005309,B-Citation [SEP] [ 53 ],91,"We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources .","We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005309 [SEP] B-Citation [SEP] [ 53 ]","We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources . [SEP] B-Citation [SEP] [ 53 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005309"
15,3,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005309,B-Application [SEP] MAKER 2,91,"We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources .","We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005309 [SEP] B-Application [SEP] MAKER 2","We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources . [SEP] B-Application [SEP] MAKER 2 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005309"
15,6,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005309,B-Version [SEP] 2 . 31 . 9,91,"We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources .","We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005309 [SEP] B-Version [SEP] 2 . 31 . 9","We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources . [SEP] B-Version [SEP] 2 . 31 . 9 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005309"
15,12,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005309,B-Application [SEP] MAKER 2,91,"We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources .","We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005309 [SEP] B-Application [SEP] MAKER 2","We used the MAKER 2 v 2 . 31 . 9 ( MAKER 2 , https://scicrunch.org/resolver/RRID:SCR_005309 ) [ 53 ] genome annotation pipeline for the structural annotation of D . silvatica genes ( Supplementary Fig . S2 ) , using both ab initio gene predictions and annotation evidences from D . silvatica and other sources . [SEP] B-Application [SEP] MAKER 2 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005309"
28,26,"B-URL [SEP] ,",B-Developer [SEP] (,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-URL [SEP] , [SEP] B-Developer [SEP] (","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Developer [SEP] ( [SEP] B-URL [SEP] ,"
28,30,"B-URL [SEP] ,",B-Citation [SEP] ) [ 55,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-URL [SEP] , [SEP] B-Citation [SEP] ) [ 55","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Citation [SEP] ) [ 55 [SEP] B-URL [SEP] ,"
28,24,"B-URL [SEP] ,",B-Application [SEP] and,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-URL [SEP] , [SEP] B-Application [SEP] and","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Application [SEP] and [SEP] B-URL [SEP] ,"
28,20,"B-URL [SEP] ,",B-Citation [SEP] ) [ 54,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-URL [SEP] , [SEP] B-Citation [SEP] ) [ 54","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Citation [SEP] ) [ 54 [SEP] B-URL [SEP] ,"
28,16,"B-URL [SEP] ,",B-Developer [SEP] (,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-URL [SEP] , [SEP] B-Developer [SEP] (","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Developer [SEP] ( [SEP] B-URL [SEP] ,"
28,10,"B-URL [SEP] ,",B-Version [SEP] v 3 . 1 .,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-URL [SEP] , [SEP] B-Version [SEP] v 3 . 1 .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Version [SEP] v 3 . 1 . [SEP] B-URL [SEP] ,"
28,8,"B-URL [SEP] ,",B-Application [SEP] trained,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-URL [SEP] , [SEP] B-Application [SEP] trained","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Application [SEP] trained [SEP] B-URL [SEP] ,"
26,28,B-Developer [SEP] (,"B-URL [SEP] ,",92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Developer [SEP] ( [SEP] B-URL [SEP] ,","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-URL [SEP] , [SEP] B-Developer [SEP] ("
26,30,B-Developer [SEP] (,B-Citation [SEP] ) [ 55,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Developer [SEP] ( [SEP] B-Citation [SEP] ) [ 55","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Citation [SEP] ) [ 55 [SEP] B-Developer [SEP] ("
26,24,B-Developer [SEP] (,B-Application [SEP] and,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Developer [SEP] ( [SEP] B-Application [SEP] and","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Application [SEP] and [SEP] B-Developer [SEP] ("
26,20,B-Developer [SEP] (,B-Citation [SEP] ) [ 54,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Developer [SEP] ( [SEP] B-Citation [SEP] ) [ 54","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Citation [SEP] ) [ 54 [SEP] B-Developer [SEP] ("
26,18,B-Developer [SEP] (,"B-URL [SEP] ,",92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Developer [SEP] ( [SEP] B-URL [SEP] ,","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-URL [SEP] , [SEP] B-Developer [SEP] ("
26,10,B-Developer [SEP] (,B-Version [SEP] v 3 . 1 .,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Developer [SEP] ( [SEP] B-Version [SEP] v 3 . 1 .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Version [SEP] v 3 . 1 . [SEP] B-Developer [SEP] ("
26,8,B-Developer [SEP] (,B-Application [SEP] trained,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Developer [SEP] ( [SEP] B-Application [SEP] trained","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Application [SEP] trained [SEP] B-Developer [SEP] ("
30,28,B-Citation [SEP] ) [ 55,"B-URL [SEP] ,",92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Citation [SEP] ) [ 55 [SEP] B-URL [SEP] ,","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-URL [SEP] , [SEP] B-Citation [SEP] ) [ 55"
30,26,B-Citation [SEP] ) [ 55,B-Developer [SEP] (,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Citation [SEP] ) [ 55 [SEP] B-Developer [SEP] (","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Developer [SEP] ( [SEP] B-Citation [SEP] ) [ 55"
30,24,B-Citation [SEP] ) [ 55,B-Application [SEP] and,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Citation [SEP] ) [ 55 [SEP] B-Application [SEP] and","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Application [SEP] and [SEP] B-Citation [SEP] ) [ 55"
30,20,B-Citation [SEP] ) [ 55,B-Citation [SEP] ) [ 54,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Citation [SEP] ) [ 55 [SEP] B-Citation [SEP] ) [ 54","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Citation [SEP] ) [ 54 [SEP] B-Citation [SEP] ) [ 55"
30,18,B-Citation [SEP] ) [ 55,"B-URL [SEP] ,",92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Citation [SEP] ) [ 55 [SEP] B-URL [SEP] ,","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-URL [SEP] , [SEP] B-Citation [SEP] ) [ 55"
30,16,B-Citation [SEP] ) [ 55,B-Developer [SEP] (,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Citation [SEP] ) [ 55 [SEP] B-Developer [SEP] (","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Developer [SEP] ( [SEP] B-Citation [SEP] ) [ 55"
30,10,B-Citation [SEP] ) [ 55,B-Version [SEP] v 3 . 1 .,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Citation [SEP] ) [ 55 [SEP] B-Version [SEP] v 3 . 1 .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Version [SEP] v 3 . 1 . [SEP] B-Citation [SEP] ) [ 55"
30,8,B-Citation [SEP] ) [ 55,B-Application [SEP] trained,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Citation [SEP] ) [ 55 [SEP] B-Application [SEP] trained","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Application [SEP] trained [SEP] B-Citation [SEP] ) [ 55"
24,28,B-Application [SEP] and,"B-URL [SEP] ,",92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Application [SEP] and [SEP] B-URL [SEP] ,","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-URL [SEP] , [SEP] B-Application [SEP] and"
24,26,B-Application [SEP] and,B-Developer [SEP] (,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Application [SEP] and [SEP] B-Developer [SEP] (","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Developer [SEP] ( [SEP] B-Application [SEP] and"
24,30,B-Application [SEP] and,B-Citation [SEP] ) [ 55,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Application [SEP] and [SEP] B-Citation [SEP] ) [ 55","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Citation [SEP] ) [ 55 [SEP] B-Application [SEP] and"
24,20,B-Application [SEP] and,B-Citation [SEP] ) [ 54,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Application [SEP] and [SEP] B-Citation [SEP] ) [ 54","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Citation [SEP] ) [ 54 [SEP] B-Application [SEP] and"
24,18,B-Application [SEP] and,"B-URL [SEP] ,",92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Application [SEP] and [SEP] B-URL [SEP] ,","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-URL [SEP] , [SEP] B-Application [SEP] and"
24,16,B-Application [SEP] and,B-Developer [SEP] (,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Application [SEP] and [SEP] B-Developer [SEP] (","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Developer [SEP] ( [SEP] B-Application [SEP] and"
24,10,B-Application [SEP] and,B-Version [SEP] v 3 . 1 .,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Application [SEP] and [SEP] B-Version [SEP] v 3 . 1 .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Version [SEP] v 3 . 1 . [SEP] B-Application [SEP] and"
24,8,B-Application [SEP] and,B-Application [SEP] trained,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Application [SEP] and [SEP] B-Application [SEP] trained","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Application [SEP] trained [SEP] B-Application [SEP] and"
20,28,B-Citation [SEP] ) [ 54,"B-URL [SEP] ,",92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Citation [SEP] ) [ 54 [SEP] B-URL [SEP] ,","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-URL [SEP] , [SEP] B-Citation [SEP] ) [ 54"
20,26,B-Citation [SEP] ) [ 54,B-Developer [SEP] (,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Citation [SEP] ) [ 54 [SEP] B-Developer [SEP] (","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Developer [SEP] ( [SEP] B-Citation [SEP] ) [ 54"
20,30,B-Citation [SEP] ) [ 54,B-Citation [SEP] ) [ 55,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Citation [SEP] ) [ 54 [SEP] B-Citation [SEP] ) [ 55","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Citation [SEP] ) [ 55 [SEP] B-Citation [SEP] ) [ 54"
20,24,B-Citation [SEP] ) [ 54,B-Application [SEP] and,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Citation [SEP] ) [ 54 [SEP] B-Application [SEP] and","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Application [SEP] and [SEP] B-Citation [SEP] ) [ 54"
20,18,B-Citation [SEP] ) [ 54,"B-URL [SEP] ,",92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Citation [SEP] ) [ 54 [SEP] B-URL [SEP] ,","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-URL [SEP] , [SEP] B-Citation [SEP] ) [ 54"
20,16,B-Citation [SEP] ) [ 54,B-Developer [SEP] (,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Citation [SEP] ) [ 54 [SEP] B-Developer [SEP] (","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Developer [SEP] ( [SEP] B-Citation [SEP] ) [ 54"
20,10,B-Citation [SEP] ) [ 54,B-Version [SEP] v 3 . 1 .,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Citation [SEP] ) [ 54 [SEP] B-Version [SEP] v 3 . 1 .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Version [SEP] v 3 . 1 . [SEP] B-Citation [SEP] ) [ 54"
20,8,B-Citation [SEP] ) [ 54,B-Application [SEP] trained,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Citation [SEP] ) [ 54 [SEP] B-Application [SEP] trained","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Application [SEP] trained [SEP] B-Citation [SEP] ) [ 54"
18,26,"B-URL [SEP] ,",B-Developer [SEP] (,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-URL [SEP] , [SEP] B-Developer [SEP] (","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Developer [SEP] ( [SEP] B-URL [SEP] ,"
18,30,"B-URL [SEP] ,",B-Citation [SEP] ) [ 55,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-URL [SEP] , [SEP] B-Citation [SEP] ) [ 55","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Citation [SEP] ) [ 55 [SEP] B-URL [SEP] ,"
18,24,"B-URL [SEP] ,",B-Application [SEP] and,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-URL [SEP] , [SEP] B-Application [SEP] and","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Application [SEP] and [SEP] B-URL [SEP] ,"
18,20,"B-URL [SEP] ,",B-Citation [SEP] ) [ 54,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-URL [SEP] , [SEP] B-Citation [SEP] ) [ 54","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Citation [SEP] ) [ 54 [SEP] B-URL [SEP] ,"
18,16,"B-URL [SEP] ,",B-Developer [SEP] (,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-URL [SEP] , [SEP] B-Developer [SEP] (","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Developer [SEP] ( [SEP] B-URL [SEP] ,"
18,10,"B-URL [SEP] ,",B-Version [SEP] v 3 . 1 .,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-URL [SEP] , [SEP] B-Version [SEP] v 3 . 1 .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Version [SEP] v 3 . 1 . [SEP] B-URL [SEP] ,"
18,8,"B-URL [SEP] ,",B-Application [SEP] trained,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-URL [SEP] , [SEP] B-Application [SEP] trained","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Application [SEP] trained [SEP] B-URL [SEP] ,"
16,28,B-Developer [SEP] (,"B-URL [SEP] ,",92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Developer [SEP] ( [SEP] B-URL [SEP] ,","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-URL [SEP] , [SEP] B-Developer [SEP] ("
16,30,B-Developer [SEP] (,B-Citation [SEP] ) [ 55,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Developer [SEP] ( [SEP] B-Citation [SEP] ) [ 55","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Citation [SEP] ) [ 55 [SEP] B-Developer [SEP] ("
16,24,B-Developer [SEP] (,B-Application [SEP] and,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Developer [SEP] ( [SEP] B-Application [SEP] and","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Application [SEP] and [SEP] B-Developer [SEP] ("
16,20,B-Developer [SEP] (,B-Citation [SEP] ) [ 54,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Developer [SEP] ( [SEP] B-Citation [SEP] ) [ 54","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Citation [SEP] ) [ 54 [SEP] B-Developer [SEP] ("
16,18,B-Developer [SEP] (,"B-URL [SEP] ,",92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Developer [SEP] ( [SEP] B-URL [SEP] ,","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-URL [SEP] , [SEP] B-Developer [SEP] ("
16,10,B-Developer [SEP] (,B-Version [SEP] v 3 . 1 .,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Developer [SEP] ( [SEP] B-Version [SEP] v 3 . 1 .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Version [SEP] v 3 . 1 . [SEP] B-Developer [SEP] ("
16,8,B-Developer [SEP] (,B-Application [SEP] trained,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Developer [SEP] ( [SEP] B-Application [SEP] trained","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Application [SEP] trained [SEP] B-Developer [SEP] ("
10,28,B-Version [SEP] v 3 . 1 .,"B-URL [SEP] ,",92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Version [SEP] v 3 . 1 . [SEP] B-URL [SEP] ,","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-URL [SEP] , [SEP] B-Version [SEP] v 3 . 1 ."
10,26,B-Version [SEP] v 3 . 1 .,B-Developer [SEP] (,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Version [SEP] v 3 . 1 . [SEP] B-Developer [SEP] (","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Developer [SEP] ( [SEP] B-Version [SEP] v 3 . 1 ."
10,30,B-Version [SEP] v 3 . 1 .,B-Citation [SEP] ) [ 55,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Version [SEP] v 3 . 1 . [SEP] B-Citation [SEP] ) [ 55","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Citation [SEP] ) [ 55 [SEP] B-Version [SEP] v 3 . 1 ."
10,24,B-Version [SEP] v 3 . 1 .,B-Application [SEP] and,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Version [SEP] v 3 . 1 . [SEP] B-Application [SEP] and","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Application [SEP] and [SEP] B-Version [SEP] v 3 . 1 ."
10,20,B-Version [SEP] v 3 . 1 .,B-Citation [SEP] ) [ 54,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Version [SEP] v 3 . 1 . [SEP] B-Citation [SEP] ) [ 54","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Citation [SEP] ) [ 54 [SEP] B-Version [SEP] v 3 . 1 ."
10,18,B-Version [SEP] v 3 . 1 .,"B-URL [SEP] ,",92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Version [SEP] v 3 . 1 . [SEP] B-URL [SEP] ,","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-URL [SEP] , [SEP] B-Version [SEP] v 3 . 1 ."
10,16,B-Version [SEP] v 3 . 1 .,B-Developer [SEP] (,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Version [SEP] v 3 . 1 . [SEP] B-Developer [SEP] (","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Developer [SEP] ( [SEP] B-Version [SEP] v 3 . 1 ."
10,8,B-Version [SEP] v 3 . 1 .,B-Application [SEP] trained,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Version [SEP] v 3 . 1 . [SEP] B-Application [SEP] trained","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Application [SEP] trained [SEP] B-Version [SEP] v 3 . 1 ."
8,28,B-Application [SEP] trained,"B-URL [SEP] ,",92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Application [SEP] trained [SEP] B-URL [SEP] ,","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-URL [SEP] , [SEP] B-Application [SEP] trained"
8,26,B-Application [SEP] trained,B-Developer [SEP] (,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Application [SEP] trained [SEP] B-Developer [SEP] (","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Developer [SEP] ( [SEP] B-Application [SEP] trained"
8,30,B-Application [SEP] trained,B-Citation [SEP] ) [ 55,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Application [SEP] trained [SEP] B-Citation [SEP] ) [ 55","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Citation [SEP] ) [ 55 [SEP] B-Application [SEP] trained"
8,24,B-Application [SEP] trained,B-Application [SEP] and,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Application [SEP] trained [SEP] B-Application [SEP] and","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Application [SEP] and [SEP] B-Application [SEP] trained"
8,20,B-Application [SEP] trained,B-Citation [SEP] ) [ 54,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Application [SEP] trained [SEP] B-Citation [SEP] ) [ 54","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Citation [SEP] ) [ 54 [SEP] B-Application [SEP] trained"
8,18,B-Application [SEP] trained,"B-URL [SEP] ,",92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Application [SEP] trained [SEP] B-URL [SEP] ,","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-URL [SEP] , [SEP] B-Application [SEP] trained"
8,16,B-Application [SEP] trained,B-Developer [SEP] (,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Application [SEP] trained [SEP] B-Developer [SEP] (","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Developer [SEP] ( [SEP] B-Application [SEP] trained"
8,10,B-Application [SEP] trained,B-Version [SEP] v 3 . 1 .,92,"For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Application [SEP] trained [SEP] B-Version [SEP] v 3 . 1 .","For the ab initio gene predictions we initially trained Augustus v 3 . 1 . 0 ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 54 ] and SNAP ( SNAP , https://scicrunch.org/resolver/RRID:SCR_002127 ) [ 55 ] softwares using scaffolds longer than 20 kb , and BUSCO gene models generated from completeness searches . [SEP] B-Version [SEP] v 3 . 1 . [SEP] B-Application [SEP] trained"
48,44,B-Application [SEP] regtools,B-Citation [SEP] [ 51 ],93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] regtools [SEP] B-Citation [SEP] [ 51 ]","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Citation [SEP] [ 51 ] [SEP] B-Application [SEP] regtools"
48,43,B-Application [SEP] regtools,B-Version [SEP] 2,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] regtools [SEP] B-Version [SEP] 2","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] regtools"
48,42,B-Application [SEP] regtools,B-Application [SEP] HISAT,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] regtools [SEP] B-Application [SEP] HISAT","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] HISAT [SEP] B-Application [SEP] regtools"
48,49,B-Application [SEP] regtools,B-Citation [SEP] [ 57 ],93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] regtools [SEP] B-Citation [SEP] [ 57 ]","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Citation [SEP] [ 57 ] [SEP] B-Application [SEP] regtools"
48,11,B-Application [SEP] regtools,B-Application [SEP] Augustus,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] regtools [SEP] B-Application [SEP] Augustus","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] Augustus [SEP] B-Application [SEP] regtools"
48,9,B-Application [SEP] regtools,B-Version [SEP] 2,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] regtools [SEP] B-Version [SEP] 2","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] regtools"
48,8,B-Application [SEP] regtools,B-Application [SEP] MAKER,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] regtools [SEP] B-Application [SEP] MAKER","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] MAKER [SEP] B-Application [SEP] regtools"
48,14,B-Application [SEP] regtools,B-Application [SEP] SNAP,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] regtools [SEP] B-Application [SEP] SNAP","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] SNAP [SEP] B-Application [SEP] regtools"
44,48,B-Citation [SEP] [ 51 ],B-Application [SEP] regtools,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Citation [SEP] [ 51 ] [SEP] B-Application [SEP] regtools","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] regtools [SEP] B-Citation [SEP] [ 51 ]"
44,43,B-Citation [SEP] [ 51 ],B-Version [SEP] 2,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Citation [SEP] [ 51 ] [SEP] B-Version [SEP] 2","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 51 ]"
44,42,B-Citation [SEP] [ 51 ],B-Application [SEP] HISAT,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Citation [SEP] [ 51 ] [SEP] B-Application [SEP] HISAT","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] HISAT [SEP] B-Citation [SEP] [ 51 ]"
44,49,B-Citation [SEP] [ 51 ],B-Citation [SEP] [ 57 ],93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Citation [SEP] [ 51 ] [SEP] B-Citation [SEP] [ 57 ]","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Citation [SEP] [ 57 ] [SEP] B-Citation [SEP] [ 51 ]"
44,11,B-Citation [SEP] [ 51 ],B-Application [SEP] Augustus,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Citation [SEP] [ 51 ] [SEP] B-Application [SEP] Augustus","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] Augustus [SEP] B-Citation [SEP] [ 51 ]"
44,9,B-Citation [SEP] [ 51 ],B-Version [SEP] 2,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Citation [SEP] [ 51 ] [SEP] B-Version [SEP] 2","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 51 ]"
44,8,B-Citation [SEP] [ 51 ],B-Application [SEP] MAKER,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Citation [SEP] [ 51 ] [SEP] B-Application [SEP] MAKER","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] MAKER [SEP] B-Citation [SEP] [ 51 ]"
44,14,B-Citation [SEP] [ 51 ],B-Application [SEP] SNAP,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Citation [SEP] [ 51 ] [SEP] B-Application [SEP] SNAP","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] SNAP [SEP] B-Citation [SEP] [ 51 ]"
43,48,B-Version [SEP] 2,B-Application [SEP] regtools,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] regtools","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] regtools [SEP] B-Version [SEP] 2"
43,44,B-Version [SEP] 2,B-Citation [SEP] [ 51 ],93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 51 ]","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Citation [SEP] [ 51 ] [SEP] B-Version [SEP] 2"
43,42,B-Version [SEP] 2,B-Application [SEP] HISAT,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] HISAT","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] HISAT [SEP] B-Version [SEP] 2"
43,49,B-Version [SEP] 2,B-Citation [SEP] [ 57 ],93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 57 ]","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Citation [SEP] [ 57 ] [SEP] B-Version [SEP] 2"
43,11,B-Version [SEP] 2,B-Application [SEP] Augustus,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] Augustus","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] Augustus [SEP] B-Version [SEP] 2"
43,8,B-Version [SEP] 2,B-Application [SEP] MAKER,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] MAKER","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] MAKER [SEP] B-Version [SEP] 2"
43,14,B-Version [SEP] 2,B-Application [SEP] SNAP,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] SNAP","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] SNAP [SEP] B-Version [SEP] 2"
42,48,B-Application [SEP] HISAT,B-Application [SEP] regtools,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] HISAT [SEP] B-Application [SEP] regtools","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] regtools [SEP] B-Application [SEP] HISAT"
42,44,B-Application [SEP] HISAT,B-Citation [SEP] [ 51 ],93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] HISAT [SEP] B-Citation [SEP] [ 51 ]","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Citation [SEP] [ 51 ] [SEP] B-Application [SEP] HISAT"
42,43,B-Application [SEP] HISAT,B-Version [SEP] 2,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] HISAT [SEP] B-Version [SEP] 2","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] HISAT"
42,49,B-Application [SEP] HISAT,B-Citation [SEP] [ 57 ],93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] HISAT [SEP] B-Citation [SEP] [ 57 ]","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Citation [SEP] [ 57 ] [SEP] B-Application [SEP] HISAT"
42,11,B-Application [SEP] HISAT,B-Application [SEP] Augustus,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] HISAT [SEP] B-Application [SEP] Augustus","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] Augustus [SEP] B-Application [SEP] HISAT"
42,9,B-Application [SEP] HISAT,B-Version [SEP] 2,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] HISAT [SEP] B-Version [SEP] 2","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] HISAT"
42,8,B-Application [SEP] HISAT,B-Application [SEP] MAKER,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] HISAT [SEP] B-Application [SEP] MAKER","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] MAKER [SEP] B-Application [SEP] HISAT"
42,14,B-Application [SEP] HISAT,B-Application [SEP] SNAP,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] HISAT [SEP] B-Application [SEP] SNAP","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] SNAP [SEP] B-Application [SEP] HISAT"
49,48,B-Citation [SEP] [ 57 ],B-Application [SEP] regtools,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Citation [SEP] [ 57 ] [SEP] B-Application [SEP] regtools","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] regtools [SEP] B-Citation [SEP] [ 57 ]"
49,44,B-Citation [SEP] [ 57 ],B-Citation [SEP] [ 51 ],93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Citation [SEP] [ 57 ] [SEP] B-Citation [SEP] [ 51 ]","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Citation [SEP] [ 51 ] [SEP] B-Citation [SEP] [ 57 ]"
49,43,B-Citation [SEP] [ 57 ],B-Version [SEP] 2,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Citation [SEP] [ 57 ] [SEP] B-Version [SEP] 2","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 57 ]"
49,42,B-Citation [SEP] [ 57 ],B-Application [SEP] HISAT,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Citation [SEP] [ 57 ] [SEP] B-Application [SEP] HISAT","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] HISAT [SEP] B-Citation [SEP] [ 57 ]"
49,11,B-Citation [SEP] [ 57 ],B-Application [SEP] Augustus,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Citation [SEP] [ 57 ] [SEP] B-Application [SEP] Augustus","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] Augustus [SEP] B-Citation [SEP] [ 57 ]"
49,9,B-Citation [SEP] [ 57 ],B-Version [SEP] 2,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Citation [SEP] [ 57 ] [SEP] B-Version [SEP] 2","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 57 ]"
49,8,B-Citation [SEP] [ 57 ],B-Application [SEP] MAKER,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Citation [SEP] [ 57 ] [SEP] B-Application [SEP] MAKER","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] MAKER [SEP] B-Citation [SEP] [ 57 ]"
49,14,B-Citation [SEP] [ 57 ],B-Application [SEP] SNAP,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Citation [SEP] [ 57 ] [SEP] B-Application [SEP] SNAP","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] SNAP [SEP] B-Citation [SEP] [ 57 ]"
11,48,B-Application [SEP] Augustus,B-Application [SEP] regtools,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] Augustus [SEP] B-Application [SEP] regtools","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] regtools [SEP] B-Application [SEP] Augustus"
11,44,B-Application [SEP] Augustus,B-Citation [SEP] [ 51 ],93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] Augustus [SEP] B-Citation [SEP] [ 51 ]","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Citation [SEP] [ 51 ] [SEP] B-Application [SEP] Augustus"
11,43,B-Application [SEP] Augustus,B-Version [SEP] 2,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] Augustus [SEP] B-Version [SEP] 2","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] Augustus"
11,42,B-Application [SEP] Augustus,B-Application [SEP] HISAT,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] Augustus [SEP] B-Application [SEP] HISAT","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] HISAT [SEP] B-Application [SEP] Augustus"
11,49,B-Application [SEP] Augustus,B-Citation [SEP] [ 57 ],93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] Augustus [SEP] B-Citation [SEP] [ 57 ]","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Citation [SEP] [ 57 ] [SEP] B-Application [SEP] Augustus"
11,9,B-Application [SEP] Augustus,B-Version [SEP] 2,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] Augustus [SEP] B-Version [SEP] 2","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] Augustus"
11,8,B-Application [SEP] Augustus,B-Application [SEP] MAKER,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] Augustus [SEP] B-Application [SEP] MAKER","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] MAKER [SEP] B-Application [SEP] Augustus"
11,14,B-Application [SEP] Augustus,B-Application [SEP] SNAP,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] Augustus [SEP] B-Application [SEP] SNAP","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] SNAP [SEP] B-Application [SEP] Augustus"
9,48,B-Version [SEP] 2,B-Application [SEP] regtools,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] regtools","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] regtools [SEP] B-Version [SEP] 2"
9,44,B-Version [SEP] 2,B-Citation [SEP] [ 51 ],93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 51 ]","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Citation [SEP] [ 51 ] [SEP] B-Version [SEP] 2"
9,42,B-Version [SEP] 2,B-Application [SEP] HISAT,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] HISAT","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] HISAT [SEP] B-Version [SEP] 2"
9,49,B-Version [SEP] 2,B-Citation [SEP] [ 57 ],93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 57 ]","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Citation [SEP] [ 57 ] [SEP] B-Version [SEP] 2"
9,11,B-Version [SEP] 2,B-Application [SEP] Augustus,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] Augustus","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] Augustus [SEP] B-Version [SEP] 2"
9,8,B-Version [SEP] 2,B-Application [SEP] MAKER,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] MAKER","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] MAKER [SEP] B-Version [SEP] 2"
9,14,B-Version [SEP] 2,B-Application [SEP] SNAP,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] SNAP","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] SNAP [SEP] B-Version [SEP] 2"
8,48,B-Application [SEP] MAKER,B-Application [SEP] regtools,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] MAKER [SEP] B-Application [SEP] regtools","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] regtools [SEP] B-Application [SEP] MAKER"
8,44,B-Application [SEP] MAKER,B-Citation [SEP] [ 51 ],93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] MAKER [SEP] B-Citation [SEP] [ 51 ]","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Citation [SEP] [ 51 ] [SEP] B-Application [SEP] MAKER"
8,43,B-Application [SEP] MAKER,B-Version [SEP] 2,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] MAKER [SEP] B-Version [SEP] 2","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] MAKER"
8,42,B-Application [SEP] MAKER,B-Application [SEP] HISAT,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] MAKER [SEP] B-Application [SEP] HISAT","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] HISAT [SEP] B-Application [SEP] MAKER"
8,49,B-Application [SEP] MAKER,B-Citation [SEP] [ 57 ],93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] MAKER [SEP] B-Citation [SEP] [ 57 ]","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Citation [SEP] [ 57 ] [SEP] B-Application [SEP] MAKER"
8,11,B-Application [SEP] MAKER,B-Application [SEP] Augustus,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] MAKER [SEP] B-Application [SEP] Augustus","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] Augustus [SEP] B-Application [SEP] MAKER"
8,9,B-Application [SEP] MAKER,B-Version [SEP] 2,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] MAKER [SEP] B-Version [SEP] 2","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] MAKER"
8,14,B-Application [SEP] MAKER,B-Application [SEP] SNAP,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] MAKER [SEP] B-Application [SEP] SNAP","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] SNAP [SEP] B-Application [SEP] MAKER"
14,48,B-Application [SEP] SNAP,B-Application [SEP] regtools,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] SNAP [SEP] B-Application [SEP] regtools","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] regtools [SEP] B-Application [SEP] SNAP"
14,44,B-Application [SEP] SNAP,B-Citation [SEP] [ 51 ],93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] SNAP [SEP] B-Citation [SEP] [ 51 ]","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Citation [SEP] [ 51 ] [SEP] B-Application [SEP] SNAP"
14,43,B-Application [SEP] SNAP,B-Version [SEP] 2,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] SNAP [SEP] B-Version [SEP] 2","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] SNAP"
14,42,B-Application [SEP] SNAP,B-Application [SEP] HISAT,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] SNAP [SEP] B-Application [SEP] HISAT","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] HISAT [SEP] B-Application [SEP] SNAP"
14,49,B-Application [SEP] SNAP,B-Citation [SEP] [ 57 ],93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] SNAP [SEP] B-Citation [SEP] [ 57 ]","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Citation [SEP] [ 57 ] [SEP] B-Application [SEP] SNAP"
14,11,B-Application [SEP] SNAP,B-Application [SEP] Augustus,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] SNAP [SEP] B-Application [SEP] Augustus","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] Augustus [SEP] B-Application [SEP] SNAP"
14,9,B-Application [SEP] SNAP,B-Version [SEP] 2,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] SNAP [SEP] B-Version [SEP] 2","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] SNAP"
14,8,B-Application [SEP] SNAP,B-Application [SEP] MAKER,93,"After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) .","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] SNAP [SEP] B-Application [SEP] MAKER","After several iterative training rounds , we applied MAKER 2 , Augustus , and SNAP , adding other sources of evidence: ( i ) transcript evidence ( Dsil - RefGuided transcriptome ) , ( ii ) RNAseq reads exon junctions generated with HISAT 2 [ 51 ] and regtools [ 57 ] , and ( iii ) proteins annotated in other arthropods , especially chelicerates ( Fig [ 2 ] . ; Supplementary Table S1 - 11 ) . [SEP] B-Application [SEP] MAKER [SEP] B-Application [SEP] SNAP"
16,18,B-Application [SEP] InterProScan,B-Version [SEP] 5 . 15 - 54,94,"We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) .","We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) . [SEP] B-Application [SEP] InterProScan [SEP] B-Version [SEP] 5 . 15 - 54","We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) . [SEP] B-Version [SEP] 5 . 15 - 54 [SEP] B-Application [SEP] InterProScan"
16,24,B-Application [SEP] InterProScan,B-Developer [SEP] InterProScan,94,"We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) .","We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) . [SEP] B-Application [SEP] InterProScan [SEP] B-Developer [SEP] InterProScan","We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) . [SEP] B-Developer [SEP] InterProScan [SEP] B-Application [SEP] InterProScan"
16,26,B-Application [SEP] InterProScan,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829,94,"We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) .","We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) . [SEP] B-Application [SEP] InterProScan [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829","We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829 [SEP] B-Application [SEP] InterProScan"
16,28,B-Application [SEP] InterProScan,"B-Citation [SEP] [ 60 , 61 ]",94,"We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) .","We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) . [SEP] B-Application [SEP] InterProScan [SEP] B-Citation [SEP] [ 60 , 61 ]","We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) . [SEP] B-Citation [SEP] [ 60 , 61 ] [SEP] B-Application [SEP] InterProScan"
18,16,B-Version [SEP] 5 . 15 - 54,B-Application [SEP] InterProScan,94,"We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) .","We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) . [SEP] B-Version [SEP] 5 . 15 - 54 [SEP] B-Application [SEP] InterProScan","We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) . [SEP] B-Application [SEP] InterProScan [SEP] B-Version [SEP] 5 . 15 - 54"
18,24,B-Version [SEP] 5 . 15 - 54,B-Developer [SEP] InterProScan,94,"We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) .","We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) . [SEP] B-Version [SEP] 5 . 15 - 54 [SEP] B-Developer [SEP] InterProScan","We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) . [SEP] B-Developer [SEP] InterProScan [SEP] B-Version [SEP] 5 . 15 - 54"
18,26,B-Version [SEP] 5 . 15 - 54,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829,94,"We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) .","We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) . [SEP] B-Version [SEP] 5 . 15 - 54 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829","We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829 [SEP] B-Version [SEP] 5 . 15 - 54"
18,28,B-Version [SEP] 5 . 15 - 54,"B-Citation [SEP] [ 60 , 61 ]",94,"We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) .","We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) . [SEP] B-Version [SEP] 5 . 15 - 54 [SEP] B-Citation [SEP] [ 60 , 61 ]","We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) . [SEP] B-Citation [SEP] [ 60 , 61 ] [SEP] B-Version [SEP] 5 . 15 - 54"
24,16,B-Developer [SEP] InterProScan,B-Application [SEP] InterProScan,94,"We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) .","We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) . [SEP] B-Developer [SEP] InterProScan [SEP] B-Application [SEP] InterProScan","We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) . [SEP] B-Application [SEP] InterProScan [SEP] B-Developer [SEP] InterProScan"
24,18,B-Developer [SEP] InterProScan,B-Version [SEP] 5 . 15 - 54,94,"We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) .","We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) . [SEP] B-Developer [SEP] InterProScan [SEP] B-Version [SEP] 5 . 15 - 54","We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) . [SEP] B-Version [SEP] 5 . 15 - 54 [SEP] B-Developer [SEP] InterProScan"
24,26,B-Developer [SEP] InterProScan,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829,94,"We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) .","We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) . [SEP] B-Developer [SEP] InterProScan [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829","We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829 [SEP] B-Developer [SEP] InterProScan"
24,28,B-Developer [SEP] InterProScan,"B-Citation [SEP] [ 60 , 61 ]",94,"We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) .","We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) . [SEP] B-Developer [SEP] InterProScan [SEP] B-Citation [SEP] [ 60 , 61 ]","We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) . [SEP] B-Citation [SEP] [ 60 , 61 ] [SEP] B-Developer [SEP] InterProScan"
26,16,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829,B-Application [SEP] InterProScan,94,"We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) .","We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829 [SEP] B-Application [SEP] InterProScan","We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) . [SEP] B-Application [SEP] InterProScan [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829"
26,18,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829,B-Version [SEP] 5 . 15 - 54,94,"We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) .","We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829 [SEP] B-Version [SEP] 5 . 15 - 54","We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) . [SEP] B-Version [SEP] 5 . 15 - 54 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829"
26,24,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829,B-Developer [SEP] InterProScan,94,"We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) .","We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829 [SEP] B-Developer [SEP] InterProScan","We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) . [SEP] B-Developer [SEP] InterProScan [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829"
26,28,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829,"B-Citation [SEP] [ 60 , 61 ]",94,"We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) .","We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829 [SEP] B-Citation [SEP] [ 60 , 61 ]","We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) . [SEP] B-Citation [SEP] [ 60 , 61 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829"
28,16,"B-Citation [SEP] [ 60 , 61 ]",B-Application [SEP] InterProScan,94,"We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) .","We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) . [SEP] B-Citation [SEP] [ 60 , 61 ] [SEP] B-Application [SEP] InterProScan","We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) . [SEP] B-Application [SEP] InterProScan [SEP] B-Citation [SEP] [ 60 , 61 ]"
28,18,"B-Citation [SEP] [ 60 , 61 ]",B-Version [SEP] 5 . 15 - 54,94,"We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) .","We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) . [SEP] B-Citation [SEP] [ 60 , 61 ] [SEP] B-Version [SEP] 5 . 15 - 54","We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) . [SEP] B-Version [SEP] 5 . 15 - 54 [SEP] B-Citation [SEP] [ 60 , 61 ]"
28,24,"B-Citation [SEP] [ 60 , 61 ]",B-Developer [SEP] InterProScan,94,"We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) .","We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) . [SEP] B-Citation [SEP] [ 60 , 61 ] [SEP] B-Developer [SEP] InterProScan","We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) . [SEP] B-Developer [SEP] InterProScan [SEP] B-Citation [SEP] [ 60 , 61 ]"
28,26,"B-Citation [SEP] [ 60 , 61 ]",B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829,94,"We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) .","We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) . [SEP] B-Citation [SEP] [ 60 , 61 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829","We searched for the presence of protein domain signatures in annotated protein - coding genes using InterProScan v 5 . 15 - 54 ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 60 , 61 ] , which includes information from public databases ( see additional details in Supplementary Table S1 - 7 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829 [SEP] B-Citation [SEP] [ 60 , 61 ]"
18,4,B-Citation [SEP] [ 31 ],B-Developer [SEP] NCBI,95,"Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes .","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-Citation [SEP] [ 31 ] [SEP] B-Developer [SEP] NCBI","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-Developer [SEP] NCBI [SEP] B-Citation [SEP] [ 31 ]"
18,5,B-Citation [SEP] [ 31 ],B-Application [SEP] BLASTP,95,"Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes .","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-Citation [SEP] [ 31 ] [SEP] B-Application [SEP] BLASTP","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-Application [SEP] BLASTP [SEP] B-Citation [SEP] [ 31 ]"
18,8,B-Citation [SEP] [ 31 ],B-Version [SEP] 2 . 4 . 0,95,"Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes .","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-Citation [SEP] [ 31 ] [SEP] B-Version [SEP] 2 . 4 . 0","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-Version [SEP] 2 . 4 . 0 [SEP] B-Citation [SEP] [ 31 ]"
18,14,B-Citation [SEP] [ 31 ],B-Application [SEP] BLASTP,95,"Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes .","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-Citation [SEP] [ 31 ] [SEP] B-Application [SEP] BLASTP","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-Application [SEP] BLASTP [SEP] B-Citation [SEP] [ 31 ]"
18,16,B-Citation [SEP] [ 31 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_001010,95,"Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes .","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-Citation [SEP] [ 31 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_001010","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_001010 [SEP] B-Citation [SEP] [ 31 ]"
4,18,B-Developer [SEP] NCBI,B-Citation [SEP] [ 31 ],95,"Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes .","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-Developer [SEP] NCBI [SEP] B-Citation [SEP] [ 31 ]","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-Citation [SEP] [ 31 ] [SEP] B-Developer [SEP] NCBI"
4,5,B-Developer [SEP] NCBI,B-Application [SEP] BLASTP,95,"Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes .","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-Developer [SEP] NCBI [SEP] B-Application [SEP] BLASTP","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-Application [SEP] BLASTP [SEP] B-Developer [SEP] NCBI"
4,8,B-Developer [SEP] NCBI,B-Version [SEP] 2 . 4 . 0,95,"Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes .","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-Developer [SEP] NCBI [SEP] B-Version [SEP] 2 . 4 . 0","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-Version [SEP] 2 . 4 . 0 [SEP] B-Developer [SEP] NCBI"
4,14,B-Developer [SEP] NCBI,B-Application [SEP] BLASTP,95,"Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes .","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-Developer [SEP] NCBI [SEP] B-Application [SEP] BLASTP","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-Application [SEP] BLASTP [SEP] B-Developer [SEP] NCBI"
4,16,B-Developer [SEP] NCBI,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_001010,95,"Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes .","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-Developer [SEP] NCBI [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_001010","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_001010 [SEP] B-Developer [SEP] NCBI"
5,18,B-Application [SEP] BLASTP,B-Citation [SEP] [ 31 ],95,"Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes .","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-Application [SEP] BLASTP [SEP] B-Citation [SEP] [ 31 ]","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-Citation [SEP] [ 31 ] [SEP] B-Application [SEP] BLASTP"
5,4,B-Application [SEP] BLASTP,B-Developer [SEP] NCBI,95,"Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes .","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-Application [SEP] BLASTP [SEP] B-Developer [SEP] NCBI","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-Developer [SEP] NCBI [SEP] B-Application [SEP] BLASTP"
5,8,B-Application [SEP] BLASTP,B-Version [SEP] 2 . 4 . 0,95,"Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes .","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-Application [SEP] BLASTP [SEP] B-Version [SEP] 2 . 4 . 0","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-Version [SEP] 2 . 4 . 0 [SEP] B-Application [SEP] BLASTP"
5,16,B-Application [SEP] BLASTP,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_001010,95,"Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes .","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-Application [SEP] BLASTP [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_001010","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_001010 [SEP] B-Application [SEP] BLASTP"
8,18,B-Version [SEP] 2 . 4 . 0,B-Citation [SEP] [ 31 ],95,"Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes .","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-Version [SEP] 2 . 4 . 0 [SEP] B-Citation [SEP] [ 31 ]","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-Citation [SEP] [ 31 ] [SEP] B-Version [SEP] 2 . 4 . 0"
8,4,B-Version [SEP] 2 . 4 . 0,B-Developer [SEP] NCBI,95,"Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes .","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-Version [SEP] 2 . 4 . 0 [SEP] B-Developer [SEP] NCBI","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-Developer [SEP] NCBI [SEP] B-Version [SEP] 2 . 4 . 0"
8,5,B-Version [SEP] 2 . 4 . 0,B-Application [SEP] BLASTP,95,"Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes .","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-Version [SEP] 2 . 4 . 0 [SEP] B-Application [SEP] BLASTP","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-Application [SEP] BLASTP [SEP] B-Version [SEP] 2 . 4 . 0"
8,14,B-Version [SEP] 2 . 4 . 0,B-Application [SEP] BLASTP,95,"Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes .","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-Version [SEP] 2 . 4 . 0 [SEP] B-Application [SEP] BLASTP","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-Application [SEP] BLASTP [SEP] B-Version [SEP] 2 . 4 . 0"
8,16,B-Version [SEP] 2 . 4 . 0,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_001010,95,"Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes .","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-Version [SEP] 2 . 4 . 0 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_001010","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_001010 [SEP] B-Version [SEP] 2 . 4 . 0"
14,18,B-Application [SEP] BLASTP,B-Citation [SEP] [ 31 ],95,"Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes .","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-Application [SEP] BLASTP [SEP] B-Citation [SEP] [ 31 ]","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-Citation [SEP] [ 31 ] [SEP] B-Application [SEP] BLASTP"
14,4,B-Application [SEP] BLASTP,B-Developer [SEP] NCBI,95,"Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes .","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-Application [SEP] BLASTP [SEP] B-Developer [SEP] NCBI","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-Developer [SEP] NCBI [SEP] B-Application [SEP] BLASTP"
14,8,B-Application [SEP] BLASTP,B-Version [SEP] 2 . 4 . 0,95,"Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes .","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-Application [SEP] BLASTP [SEP] B-Version [SEP] 2 . 4 . 0","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-Version [SEP] 2 . 4 . 0 [SEP] B-Application [SEP] BLASTP"
14,16,B-Application [SEP] BLASTP,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_001010,95,"Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes .","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-Application [SEP] BLASTP [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_001010","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_001010 [SEP] B-Application [SEP] BLASTP"
16,18,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_001010,B-Citation [SEP] [ 31 ],95,"Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes .","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_001010 [SEP] B-Citation [SEP] [ 31 ]","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-Citation [SEP] [ 31 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_001010"
16,4,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_001010,B-Developer [SEP] NCBI,95,"Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes .","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_001010 [SEP] B-Developer [SEP] NCBI","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-Developer [SEP] NCBI [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_001010"
16,5,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_001010,B-Application [SEP] BLASTP,95,"Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes .","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_001010 [SEP] B-Application [SEP] BLASTP","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-Application [SEP] BLASTP [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_001010"
16,8,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_001010,B-Version [SEP] 2 . 4 . 0,95,"Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes .","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_001010 [SEP] B-Version [SEP] 2 . 4 . 0","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-Version [SEP] 2 . 4 . 0 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_001010"
16,14,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_001010,B-Application [SEP] BLASTP,95,"Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes .","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_001010 [SEP] B-Application [SEP] BLASTP","Additionally , we used NCBI BLASTP v . 2 . 4 . 0 ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) [ 31 ] ( E - value cutoff < 10 ; > 75 % alignment length ) against the Swiss - Prot database to annotate D . silvatica genes . [SEP] B-Application [SEP] BLASTP [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_001010"
83,82,B-Citation [SEP] [ 56 ],B-Version [SEP] 10,96,"We searched for homologs of the functionally annotated peptides ( 36 , 398 ) ( i ) among CEG genes of Drosophila melanogaster [ 41 ] ; ( ii ) among the predicted peptides of Parasteatoda tepidariorum , a spider with a well - annotated genome [ 62 ] ; ( iii ) among the 9 , 473 1:1orthologsacross5Dysderaspecies ; and ( iv ) among the 2 , 198 single - copy genes identified in all spiders and available in OrthoDB v 10 [ 56 ] .","We searched for homologs of the functionally annotated peptides ( 36 , 398 ) ( i ) among CEG genes of Drosophila melanogaster [ 41 ] ; ( ii ) among the predicted peptides of Parasteatoda tepidariorum , a spider with a well - annotated genome [ 62 ] ; ( iii ) among the 9 , 473 1:1orthologsacross5Dysderaspecies ; and ( iv ) among the 2 , 198 single - copy genes identified in all spiders and available in OrthoDB v 10 [ 56 ] . [SEP] B-Citation [SEP] [ 56 ] [SEP] B-Version [SEP] 10","We searched for homologs of the functionally annotated peptides ( 36 , 398 ) ( i ) among CEG genes of Drosophila melanogaster [ 41 ] ; ( ii ) among the predicted peptides of Parasteatoda tepidariorum , a spider with a well - annotated genome [ 62 ] ; ( iii ) among the 9 , 473 1:1orthologsacross5Dysderaspecies ; and ( iv ) among the 2 , 198 single - copy genes identified in all spiders and available in OrthoDB v 10 [ 56 ] . [SEP] B-Version [SEP] 10 [SEP] B-Citation [SEP] [ 56 ]"
83,80,B-Citation [SEP] [ 56 ],B-Application [SEP] OrthoDB,96,"We searched for homologs of the functionally annotated peptides ( 36 , 398 ) ( i ) among CEG genes of Drosophila melanogaster [ 41 ] ; ( ii ) among the predicted peptides of Parasteatoda tepidariorum , a spider with a well - annotated genome [ 62 ] ; ( iii ) among the 9 , 473 1:1orthologsacross5Dysderaspecies ; and ( iv ) among the 2 , 198 single - copy genes identified in all spiders and available in OrthoDB v 10 [ 56 ] .","We searched for homologs of the functionally annotated peptides ( 36 , 398 ) ( i ) among CEG genes of Drosophila melanogaster [ 41 ] ; ( ii ) among the predicted peptides of Parasteatoda tepidariorum , a spider with a well - annotated genome [ 62 ] ; ( iii ) among the 9 , 473 1:1orthologsacross5Dysderaspecies ; and ( iv ) among the 2 , 198 single - copy genes identified in all spiders and available in OrthoDB v 10 [ 56 ] . [SEP] B-Citation [SEP] [ 56 ] [SEP] B-Application [SEP] OrthoDB","We searched for homologs of the functionally annotated peptides ( 36 , 398 ) ( i ) among CEG genes of Drosophila melanogaster [ 41 ] ; ( ii ) among the predicted peptides of Parasteatoda tepidariorum , a spider with a well - annotated genome [ 62 ] ; ( iii ) among the 9 , 473 1:1orthologsacross5Dysderaspecies ; and ( iv ) among the 2 , 198 single - copy genes identified in all spiders and available in OrthoDB v 10 [ 56 ] . [SEP] B-Application [SEP] OrthoDB [SEP] B-Citation [SEP] [ 56 ]"
82,83,B-Version [SEP] 10,B-Citation [SEP] [ 56 ],96,"We searched for homologs of the functionally annotated peptides ( 36 , 398 ) ( i ) among CEG genes of Drosophila melanogaster [ 41 ] ; ( ii ) among the predicted peptides of Parasteatoda tepidariorum , a spider with a well - annotated genome [ 62 ] ; ( iii ) among the 9 , 473 1:1orthologsacross5Dysderaspecies ; and ( iv ) among the 2 , 198 single - copy genes identified in all spiders and available in OrthoDB v 10 [ 56 ] .","We searched for homologs of the functionally annotated peptides ( 36 , 398 ) ( i ) among CEG genes of Drosophila melanogaster [ 41 ] ; ( ii ) among the predicted peptides of Parasteatoda tepidariorum , a spider with a well - annotated genome [ 62 ] ; ( iii ) among the 9 , 473 1:1orthologsacross5Dysderaspecies ; and ( iv ) among the 2 , 198 single - copy genes identified in all spiders and available in OrthoDB v 10 [ 56 ] . [SEP] B-Version [SEP] 10 [SEP] B-Citation [SEP] [ 56 ]","We searched for homologs of the functionally annotated peptides ( 36 , 398 ) ( i ) among CEG genes of Drosophila melanogaster [ 41 ] ; ( ii ) among the predicted peptides of Parasteatoda tepidariorum , a spider with a well - annotated genome [ 62 ] ; ( iii ) among the 9 , 473 1:1orthologsacross5Dysderaspecies ; and ( iv ) among the 2 , 198 single - copy genes identified in all spiders and available in OrthoDB v 10 [ 56 ] . [SEP] B-Citation [SEP] [ 56 ] [SEP] B-Version [SEP] 10"
82,80,B-Version [SEP] 10,B-Application [SEP] OrthoDB,96,"We searched for homologs of the functionally annotated peptides ( 36 , 398 ) ( i ) among CEG genes of Drosophila melanogaster [ 41 ] ; ( ii ) among the predicted peptides of Parasteatoda tepidariorum , a spider with a well - annotated genome [ 62 ] ; ( iii ) among the 9 , 473 1:1orthologsacross5Dysderaspecies ; and ( iv ) among the 2 , 198 single - copy genes identified in all spiders and available in OrthoDB v 10 [ 56 ] .","We searched for homologs of the functionally annotated peptides ( 36 , 398 ) ( i ) among CEG genes of Drosophila melanogaster [ 41 ] ; ( ii ) among the predicted peptides of Parasteatoda tepidariorum , a spider with a well - annotated genome [ 62 ] ; ( iii ) among the 9 , 473 1:1orthologsacross5Dysderaspecies ; and ( iv ) among the 2 , 198 single - copy genes identified in all spiders and available in OrthoDB v 10 [ 56 ] . [SEP] B-Version [SEP] 10 [SEP] B-Application [SEP] OrthoDB","We searched for homologs of the functionally annotated peptides ( 36 , 398 ) ( i ) among CEG genes of Drosophila melanogaster [ 41 ] ; ( ii ) among the predicted peptides of Parasteatoda tepidariorum , a spider with a well - annotated genome [ 62 ] ; ( iii ) among the 9 , 473 1:1orthologsacross5Dysderaspecies ; and ( iv ) among the 2 , 198 single - copy genes identified in all spiders and available in OrthoDB v 10 [ 56 ] . [SEP] B-Application [SEP] OrthoDB [SEP] B-Version [SEP] 10"
80,83,B-Application [SEP] OrthoDB,B-Citation [SEP] [ 56 ],96,"We searched for homologs of the functionally annotated peptides ( 36 , 398 ) ( i ) among CEG genes of Drosophila melanogaster [ 41 ] ; ( ii ) among the predicted peptides of Parasteatoda tepidariorum , a spider with a well - annotated genome [ 62 ] ; ( iii ) among the 9 , 473 1:1orthologsacross5Dysderaspecies ; and ( iv ) among the 2 , 198 single - copy genes identified in all spiders and available in OrthoDB v 10 [ 56 ] .","We searched for homologs of the functionally annotated peptides ( 36 , 398 ) ( i ) among CEG genes of Drosophila melanogaster [ 41 ] ; ( ii ) among the predicted peptides of Parasteatoda tepidariorum , a spider with a well - annotated genome [ 62 ] ; ( iii ) among the 9 , 473 1:1orthologsacross5Dysderaspecies ; and ( iv ) among the 2 , 198 single - copy genes identified in all spiders and available in OrthoDB v 10 [ 56 ] . [SEP] B-Application [SEP] OrthoDB [SEP] B-Citation [SEP] [ 56 ]","We searched for homologs of the functionally annotated peptides ( 36 , 398 ) ( i ) among CEG genes of Drosophila melanogaster [ 41 ] ; ( ii ) among the predicted peptides of Parasteatoda tepidariorum , a spider with a well - annotated genome [ 62 ] ; ( iii ) among the 9 , 473 1:1orthologsacross5Dysderaspecies ; and ( iv ) among the 2 , 198 single - copy genes identified in all spiders and available in OrthoDB v 10 [ 56 ] . [SEP] B-Citation [SEP] [ 56 ] [SEP] B-Application [SEP] OrthoDB"
80,82,B-Application [SEP] OrthoDB,B-Version [SEP] 10,96,"We searched for homologs of the functionally annotated peptides ( 36 , 398 ) ( i ) among CEG genes of Drosophila melanogaster [ 41 ] ; ( ii ) among the predicted peptides of Parasteatoda tepidariorum , a spider with a well - annotated genome [ 62 ] ; ( iii ) among the 9 , 473 1:1orthologsacross5Dysderaspecies ; and ( iv ) among the 2 , 198 single - copy genes identified in all spiders and available in OrthoDB v 10 [ 56 ] .","We searched for homologs of the functionally annotated peptides ( 36 , 398 ) ( i ) among CEG genes of Drosophila melanogaster [ 41 ] ; ( ii ) among the predicted peptides of Parasteatoda tepidariorum , a spider with a well - annotated genome [ 62 ] ; ( iii ) among the 9 , 473 1:1orthologsacross5Dysderaspecies ; and ( iv ) among the 2 , 198 single - copy genes identified in all spiders and available in OrthoDB v 10 [ 56 ] . [SEP] B-Application [SEP] OrthoDB [SEP] B-Version [SEP] 10","We searched for homologs of the functionally annotated peptides ( 36 , 398 ) ( i ) among CEG genes of Drosophila melanogaster [ 41 ] ; ( ii ) among the predicted peptides of Parasteatoda tepidariorum , a spider with a well - annotated genome [ 62 ] ; ( iii ) among the 9 , 473 1:1orthologsacross5Dysderaspecies ; and ( iv ) among the 2 , 198 single - copy genes identified in all spiders and available in OrthoDB v 10 [ 56 ] . [SEP] B-Version [SEP] 10 [SEP] B-Application [SEP] OrthoDB"
18,23,B-Application [SEP] BUSCO,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008,97,"Furthermore , the analysis based on the putative homologs of the single - copy genes included in the BUSCO dataset ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 40 ] , applying the default parameters for the genome and protein mode , also demonstrated the high completeness of the genome draft .","Furthermore , the analysis based on the putative homologs of the single - copy genes included in the BUSCO dataset ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 40 ] , applying the default parameters for the genome and protein mode , also demonstrated the high completeness of the genome draft . [SEP] B-Application [SEP] BUSCO [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008","Furthermore , the analysis based on the putative homologs of the single - copy genes included in the BUSCO dataset ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 40 ] , applying the default parameters for the genome and protein mode , also demonstrated the high completeness of the genome draft . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008 [SEP] B-Application [SEP] BUSCO"
18,25,B-Application [SEP] BUSCO,B-Citation [SEP] [ 40 ],97,"Furthermore , the analysis based on the putative homologs of the single - copy genes included in the BUSCO dataset ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 40 ] , applying the default parameters for the genome and protein mode , also demonstrated the high completeness of the genome draft .","Furthermore , the analysis based on the putative homologs of the single - copy genes included in the BUSCO dataset ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 40 ] , applying the default parameters for the genome and protein mode , also demonstrated the high completeness of the genome draft . [SEP] B-Application [SEP] BUSCO [SEP] B-Citation [SEP] [ 40 ]","Furthermore , the analysis based on the putative homologs of the single - copy genes included in the BUSCO dataset ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 40 ] , applying the default parameters for the genome and protein mode , also demonstrated the high completeness of the genome draft . [SEP] B-Citation [SEP] [ 40 ] [SEP] B-Application [SEP] BUSCO"
21,23,B-Application [SEP] BUSCO,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008,97,"Furthermore , the analysis based on the putative homologs of the single - copy genes included in the BUSCO dataset ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 40 ] , applying the default parameters for the genome and protein mode , also demonstrated the high completeness of the genome draft .","Furthermore , the analysis based on the putative homologs of the single - copy genes included in the BUSCO dataset ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 40 ] , applying the default parameters for the genome and protein mode , also demonstrated the high completeness of the genome draft . [SEP] B-Application [SEP] BUSCO [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008","Furthermore , the analysis based on the putative homologs of the single - copy genes included in the BUSCO dataset ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 40 ] , applying the default parameters for the genome and protein mode , also demonstrated the high completeness of the genome draft . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008 [SEP] B-Application [SEP] BUSCO"
21,25,B-Application [SEP] BUSCO,B-Citation [SEP] [ 40 ],97,"Furthermore , the analysis based on the putative homologs of the single - copy genes included in the BUSCO dataset ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 40 ] , applying the default parameters for the genome and protein mode , also demonstrated the high completeness of the genome draft .","Furthermore , the analysis based on the putative homologs of the single - copy genes included in the BUSCO dataset ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 40 ] , applying the default parameters for the genome and protein mode , also demonstrated the high completeness of the genome draft . [SEP] B-Application [SEP] BUSCO [SEP] B-Citation [SEP] [ 40 ]","Furthermore , the analysis based on the putative homologs of the single - copy genes included in the BUSCO dataset ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 40 ] , applying the default parameters for the genome and protein mode , also demonstrated the high completeness of the genome draft . [SEP] B-Citation [SEP] [ 40 ] [SEP] B-Application [SEP] BUSCO"
23,18,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008,B-Application [SEP] BUSCO,97,"Furthermore , the analysis based on the putative homologs of the single - copy genes included in the BUSCO dataset ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 40 ] , applying the default parameters for the genome and protein mode , also demonstrated the high completeness of the genome draft .","Furthermore , the analysis based on the putative homologs of the single - copy genes included in the BUSCO dataset ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 40 ] , applying the default parameters for the genome and protein mode , also demonstrated the high completeness of the genome draft . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008 [SEP] B-Application [SEP] BUSCO","Furthermore , the analysis based on the putative homologs of the single - copy genes included in the BUSCO dataset ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 40 ] , applying the default parameters for the genome and protein mode , also demonstrated the high completeness of the genome draft . [SEP] B-Application [SEP] BUSCO [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008"
23,21,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008,B-Application [SEP] BUSCO,97,"Furthermore , the analysis based on the putative homologs of the single - copy genes included in the BUSCO dataset ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 40 ] , applying the default parameters for the genome and protein mode , also demonstrated the high completeness of the genome draft .","Furthermore , the analysis based on the putative homologs of the single - copy genes included in the BUSCO dataset ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 40 ] , applying the default parameters for the genome and protein mode , also demonstrated the high completeness of the genome draft . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008 [SEP] B-Application [SEP] BUSCO","Furthermore , the analysis based on the putative homologs of the single - copy genes included in the BUSCO dataset ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 40 ] , applying the default parameters for the genome and protein mode , also demonstrated the high completeness of the genome draft . [SEP] B-Application [SEP] BUSCO [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008"
23,25,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008,B-Citation [SEP] [ 40 ],97,"Furthermore , the analysis based on the putative homologs of the single - copy genes included in the BUSCO dataset ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 40 ] , applying the default parameters for the genome and protein mode , also demonstrated the high completeness of the genome draft .","Furthermore , the analysis based on the putative homologs of the single - copy genes included in the BUSCO dataset ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 40 ] , applying the default parameters for the genome and protein mode , also demonstrated the high completeness of the genome draft . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008 [SEP] B-Citation [SEP] [ 40 ]","Furthermore , the analysis based on the putative homologs of the single - copy genes included in the BUSCO dataset ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 40 ] , applying the default parameters for the genome and protein mode , also demonstrated the high completeness of the genome draft . [SEP] B-Citation [SEP] [ 40 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008"
25,18,B-Citation [SEP] [ 40 ],B-Application [SEP] BUSCO,97,"Furthermore , the analysis based on the putative homologs of the single - copy genes included in the BUSCO dataset ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 40 ] , applying the default parameters for the genome and protein mode , also demonstrated the high completeness of the genome draft .","Furthermore , the analysis based on the putative homologs of the single - copy genes included in the BUSCO dataset ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 40 ] , applying the default parameters for the genome and protein mode , also demonstrated the high completeness of the genome draft . [SEP] B-Citation [SEP] [ 40 ] [SEP] B-Application [SEP] BUSCO","Furthermore , the analysis based on the putative homologs of the single - copy genes included in the BUSCO dataset ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 40 ] , applying the default parameters for the genome and protein mode , also demonstrated the high completeness of the genome draft . [SEP] B-Application [SEP] BUSCO [SEP] B-Citation [SEP] [ 40 ]"
25,21,B-Citation [SEP] [ 40 ],B-Application [SEP] BUSCO,97,"Furthermore , the analysis based on the putative homologs of the single - copy genes included in the BUSCO dataset ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 40 ] , applying the default parameters for the genome and protein mode , also demonstrated the high completeness of the genome draft .","Furthermore , the analysis based on the putative homologs of the single - copy genes included in the BUSCO dataset ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 40 ] , applying the default parameters for the genome and protein mode , also demonstrated the high completeness of the genome draft . [SEP] B-Citation [SEP] [ 40 ] [SEP] B-Application [SEP] BUSCO","Furthermore , the analysis based on the putative homologs of the single - copy genes included in the BUSCO dataset ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 40 ] , applying the default parameters for the genome and protein mode , also demonstrated the high completeness of the genome draft . [SEP] B-Application [SEP] BUSCO [SEP] B-Citation [SEP] [ 40 ]"
25,23,B-Citation [SEP] [ 40 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008,97,"Furthermore , the analysis based on the putative homologs of the single - copy genes included in the BUSCO dataset ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 40 ] , applying the default parameters for the genome and protein mode , also demonstrated the high completeness of the genome draft .","Furthermore , the analysis based on the putative homologs of the single - copy genes included in the BUSCO dataset ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 40 ] , applying the default parameters for the genome and protein mode , also demonstrated the high completeness of the genome draft . [SEP] B-Citation [SEP] [ 40 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008","Furthermore , the analysis based on the putative homologs of the single - copy genes included in the BUSCO dataset ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 40 ] , applying the default parameters for the genome and protein mode , also demonstrated the high completeness of the genome draft . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008 [SEP] B-Citation [SEP] [ 40 ]"
25,26,B-Application [SEP] NOVOPlasty,B-Citation [SEP] [ 63 ],98,"We assembled the mitochondrial genome of D . silvatica ( mtDsil ) from 126 , 758 reads identified in the 100PE library by the software NOVOPlasty [ 63 ] .","We assembled the mitochondrial genome of D . silvatica ( mtDsil ) from 126 , 758 reads identified in the 100PE library by the software NOVOPlasty [ 63 ] . [SEP] B-Application [SEP] NOVOPlasty [SEP] B-Citation [SEP] [ 63 ]","We assembled the mitochondrial genome of D . silvatica ( mtDsil ) from 126 , 758 reads identified in the 100PE library by the software NOVOPlasty [ 63 ] . [SEP] B-Citation [SEP] [ 63 ] [SEP] B-Application [SEP] NOVOPlasty"
26,25,B-Citation [SEP] [ 63 ],B-Application [SEP] NOVOPlasty,98,"We assembled the mitochondrial genome of D . silvatica ( mtDsil ) from 126 , 758 reads identified in the 100PE library by the software NOVOPlasty [ 63 ] .","We assembled the mitochondrial genome of D . silvatica ( mtDsil ) from 126 , 758 reads identified in the 100PE library by the software NOVOPlasty [ 63 ] . [SEP] B-Citation [SEP] [ 63 ] [SEP] B-Application [SEP] NOVOPlasty","We assembled the mitochondrial genome of D . silvatica ( mtDsil ) from 126 , 758 reads identified in the 100PE library by the software NOVOPlasty [ 63 ] . [SEP] B-Application [SEP] NOVOPlasty [SEP] B-Citation [SEP] [ 63 ]"
6,4,B-Citation [SEP] [ 64 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011779,99,"CGVIEW ( CGVIEW , https://scicrunch.org/resolver/RRID:SCR_011779 ) [ 64 ] was used to generate a genome visualization of the annotated mtDsil genome ( Supplementary Fig . S10 ) .","CGVIEW ( CGVIEW , https://scicrunch.org/resolver/RRID:SCR_011779 ) [ 64 ] was used to generate a genome visualization of the annotated mtDsil genome ( Supplementary Fig . S10 ) . [SEP] B-Citation [SEP] [ 64 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011779","CGVIEW ( CGVIEW , https://scicrunch.org/resolver/RRID:SCR_011779 ) [ 64 ] was used to generate a genome visualization of the annotated mtDsil genome ( Supplementary Fig . S10 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011779 [SEP] B-Citation [SEP] [ 64 ]"
6,2,B-Citation [SEP] [ 64 ],B-Application [SEP] CGVIEW,99,"CGVIEW ( CGVIEW , https://scicrunch.org/resolver/RRID:SCR_011779 ) [ 64 ] was used to generate a genome visualization of the annotated mtDsil genome ( Supplementary Fig . S10 ) .","CGVIEW ( CGVIEW , https://scicrunch.org/resolver/RRID:SCR_011779 ) [ 64 ] was used to generate a genome visualization of the annotated mtDsil genome ( Supplementary Fig . S10 ) . [SEP] B-Citation [SEP] [ 64 ] [SEP] B-Application [SEP] CGVIEW","CGVIEW ( CGVIEW , https://scicrunch.org/resolver/RRID:SCR_011779 ) [ 64 ] was used to generate a genome visualization of the annotated mtDsil genome ( Supplementary Fig . S10 ) . [SEP] B-Application [SEP] CGVIEW [SEP] B-Citation [SEP] [ 64 ]"
6,0,B-Citation [SEP] [ 64 ],B-Application [SEP] CGVIEW,99,"CGVIEW ( CGVIEW , https://scicrunch.org/resolver/RRID:SCR_011779 ) [ 64 ] was used to generate a genome visualization of the annotated mtDsil genome ( Supplementary Fig . S10 ) .","CGVIEW ( CGVIEW , https://scicrunch.org/resolver/RRID:SCR_011779 ) [ 64 ] was used to generate a genome visualization of the annotated mtDsil genome ( Supplementary Fig . S10 ) . [SEP] B-Citation [SEP] [ 64 ] [SEP] B-Application [SEP] CGVIEW","CGVIEW ( CGVIEW , https://scicrunch.org/resolver/RRID:SCR_011779 ) [ 64 ] was used to generate a genome visualization of the annotated mtDsil genome ( Supplementary Fig . S10 ) . [SEP] B-Application [SEP] CGVIEW [SEP] B-Citation [SEP] [ 64 ]"
4,6,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011779,B-Citation [SEP] [ 64 ],99,"CGVIEW ( CGVIEW , https://scicrunch.org/resolver/RRID:SCR_011779 ) [ 64 ] was used to generate a genome visualization of the annotated mtDsil genome ( Supplementary Fig . S10 ) .","CGVIEW ( CGVIEW , https://scicrunch.org/resolver/RRID:SCR_011779 ) [ 64 ] was used to generate a genome visualization of the annotated mtDsil genome ( Supplementary Fig . S10 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011779 [SEP] B-Citation [SEP] [ 64 ]","CGVIEW ( CGVIEW , https://scicrunch.org/resolver/RRID:SCR_011779 ) [ 64 ] was used to generate a genome visualization of the annotated mtDsil genome ( Supplementary Fig . S10 ) . [SEP] B-Citation [SEP] [ 64 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011779"
4,2,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011779,B-Application [SEP] CGVIEW,99,"CGVIEW ( CGVIEW , https://scicrunch.org/resolver/RRID:SCR_011779 ) [ 64 ] was used to generate a genome visualization of the annotated mtDsil genome ( Supplementary Fig . S10 ) .","CGVIEW ( CGVIEW , https://scicrunch.org/resolver/RRID:SCR_011779 ) [ 64 ] was used to generate a genome visualization of the annotated mtDsil genome ( Supplementary Fig . S10 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011779 [SEP] B-Application [SEP] CGVIEW","CGVIEW ( CGVIEW , https://scicrunch.org/resolver/RRID:SCR_011779 ) [ 64 ] was used to generate a genome visualization of the annotated mtDsil genome ( Supplementary Fig . S10 ) . [SEP] B-Application [SEP] CGVIEW [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011779"
4,0,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011779,B-Application [SEP] CGVIEW,99,"CGVIEW ( CGVIEW , https://scicrunch.org/resolver/RRID:SCR_011779 ) [ 64 ] was used to generate a genome visualization of the annotated mtDsil genome ( Supplementary Fig . S10 ) .","CGVIEW ( CGVIEW , https://scicrunch.org/resolver/RRID:SCR_011779 ) [ 64 ] was used to generate a genome visualization of the annotated mtDsil genome ( Supplementary Fig . S10 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011779 [SEP] B-Application [SEP] CGVIEW","CGVIEW ( CGVIEW , https://scicrunch.org/resolver/RRID:SCR_011779 ) [ 64 ] was used to generate a genome visualization of the annotated mtDsil genome ( Supplementary Fig . S10 ) . [SEP] B-Application [SEP] CGVIEW [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011779"
2,6,B-Application [SEP] CGVIEW,B-Citation [SEP] [ 64 ],99,"CGVIEW ( CGVIEW , https://scicrunch.org/resolver/RRID:SCR_011779 ) [ 64 ] was used to generate a genome visualization of the annotated mtDsil genome ( Supplementary Fig . S10 ) .","CGVIEW ( CGVIEW , https://scicrunch.org/resolver/RRID:SCR_011779 ) [ 64 ] was used to generate a genome visualization of the annotated mtDsil genome ( Supplementary Fig . S10 ) . [SEP] B-Application [SEP] CGVIEW [SEP] B-Citation [SEP] [ 64 ]","CGVIEW ( CGVIEW , https://scicrunch.org/resolver/RRID:SCR_011779 ) [ 64 ] was used to generate a genome visualization of the annotated mtDsil genome ( Supplementary Fig . S10 ) . [SEP] B-Citation [SEP] [ 64 ] [SEP] B-Application [SEP] CGVIEW"
2,4,B-Application [SEP] CGVIEW,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011779,99,"CGVIEW ( CGVIEW , https://scicrunch.org/resolver/RRID:SCR_011779 ) [ 64 ] was used to generate a genome visualization of the annotated mtDsil genome ( Supplementary Fig . S10 ) .","CGVIEW ( CGVIEW , https://scicrunch.org/resolver/RRID:SCR_011779 ) [ 64 ] was used to generate a genome visualization of the annotated mtDsil genome ( Supplementary Fig . S10 ) . [SEP] B-Application [SEP] CGVIEW [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011779","CGVIEW ( CGVIEW , https://scicrunch.org/resolver/RRID:SCR_011779 ) [ 64 ] was used to generate a genome visualization of the annotated mtDsil genome ( Supplementary Fig . S10 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011779 [SEP] B-Application [SEP] CGVIEW"
0,6,B-Application [SEP] CGVIEW,B-Citation [SEP] [ 64 ],99,"CGVIEW ( CGVIEW , https://scicrunch.org/resolver/RRID:SCR_011779 ) [ 64 ] was used to generate a genome visualization of the annotated mtDsil genome ( Supplementary Fig . S10 ) .","CGVIEW ( CGVIEW , https://scicrunch.org/resolver/RRID:SCR_011779 ) [ 64 ] was used to generate a genome visualization of the annotated mtDsil genome ( Supplementary Fig . S10 ) . [SEP] B-Application [SEP] CGVIEW [SEP] B-Citation [SEP] [ 64 ]","CGVIEW ( CGVIEW , https://scicrunch.org/resolver/RRID:SCR_011779 ) [ 64 ] was used to generate a genome visualization of the annotated mtDsil genome ( Supplementary Fig . S10 ) . [SEP] B-Citation [SEP] [ 64 ] [SEP] B-Application [SEP] CGVIEW"
0,4,B-Application [SEP] CGVIEW,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011779,99,"CGVIEW ( CGVIEW , https://scicrunch.org/resolver/RRID:SCR_011779 ) [ 64 ] was used to generate a genome visualization of the annotated mtDsil genome ( Supplementary Fig . S10 ) .","CGVIEW ( CGVIEW , https://scicrunch.org/resolver/RRID:SCR_011779 ) [ 64 ] was used to generate a genome visualization of the annotated mtDsil genome ( Supplementary Fig . S10 ) . [SEP] B-Application [SEP] CGVIEW [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011779","CGVIEW ( CGVIEW , https://scicrunch.org/resolver/RRID:SCR_011779 ) [ 64 ] was used to generate a genome visualization of the annotated mtDsil genome ( Supplementary Fig . S10 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011779 [SEP] B-Application [SEP] CGVIEW"
142,140,B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data,B-Application [SEP] PRINSEQ,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data [SEP] B-Application [SEP] PRINSEQ,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PRINSEQ [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data
142,131,B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data,B-AlternativeName [SEP] Pacific Biosciences,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data [SEP] B-AlternativeName [SEP] Pacific Biosciences,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data
142,129,B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data,B-Application [SEP] PacBio,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data [SEP] B-Application [SEP] PacBio,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PacBio [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data
142,123,B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data,B-AlternativeName [SEP] National Center for Biotechnology Information,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data
142,98,B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data,B-AlternativeName [SEP] Maryland Super - Read Celera Assembler,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data
142,8,B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data,B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data
142,29,B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data,B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data
142,27,B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data,B-Application [SEP] BUSCO,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data [SEP] B-Application [SEP] BUSCO,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BUSCO [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data
142,17,B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data,B-AlternativeName [SEP] Basic Local Alignment Tool,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data
142,15,B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data,B-Application [SEP] BLAST,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data [SEP] B-Application [SEP] BLAST,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BLAST [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data
142,6,B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data,B-Application [SEP] AGOUTI,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data [SEP] B-Application [SEP] AGOUTI,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] AGOUTI [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data
142,96,B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data,B-Application [SEP] MaSuRCA,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data [SEP] B-Application [SEP] MaSuRCA,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] MaSuRCA [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data
140,142,B-Application [SEP] PRINSEQ,B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PRINSEQ [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data [SEP] B-Application [SEP] PRINSEQ
140,131,B-Application [SEP] PRINSEQ,B-AlternativeName [SEP] Pacific Biosciences,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PRINSEQ [SEP] B-AlternativeName [SEP] Pacific Biosciences,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-Application [SEP] PRINSEQ
140,129,B-Application [SEP] PRINSEQ,B-Application [SEP] PacBio,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PRINSEQ [SEP] B-Application [SEP] PacBio,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PacBio [SEP] B-Application [SEP] PRINSEQ
140,123,B-Application [SEP] PRINSEQ,B-AlternativeName [SEP] National Center for Biotechnology Information,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PRINSEQ [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-Application [SEP] PRINSEQ
140,98,B-Application [SEP] PRINSEQ,B-AlternativeName [SEP] Maryland Super - Read Celera Assembler,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PRINSEQ [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler [SEP] B-Application [SEP] PRINSEQ
140,8,B-Application [SEP] PRINSEQ,B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PRINSEQ [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information [SEP] B-Application [SEP] PRINSEQ
140,29,B-Application [SEP] PRINSEQ,B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PRINSEQ [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs [SEP] B-Application [SEP] PRINSEQ
140,27,B-Application [SEP] PRINSEQ,B-Application [SEP] BUSCO,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PRINSEQ [SEP] B-Application [SEP] BUSCO,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BUSCO [SEP] B-Application [SEP] PRINSEQ
140,17,B-Application [SEP] PRINSEQ,B-AlternativeName [SEP] Basic Local Alignment Tool,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PRINSEQ [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool [SEP] B-Application [SEP] PRINSEQ
140,15,B-Application [SEP] PRINSEQ,B-Application [SEP] BLAST,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PRINSEQ [SEP] B-Application [SEP] BLAST,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BLAST [SEP] B-Application [SEP] PRINSEQ
140,6,B-Application [SEP] PRINSEQ,B-Application [SEP] AGOUTI,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PRINSEQ [SEP] B-Application [SEP] AGOUTI,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] AGOUTI [SEP] B-Application [SEP] PRINSEQ
140,96,B-Application [SEP] PRINSEQ,B-Application [SEP] MaSuRCA,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PRINSEQ [SEP] B-Application [SEP] MaSuRCA,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] MaSuRCA [SEP] B-Application [SEP] PRINSEQ
131,142,B-AlternativeName [SEP] Pacific Biosciences,B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data [SEP] B-AlternativeName [SEP] Pacific Biosciences
131,140,B-AlternativeName [SEP] Pacific Biosciences,B-Application [SEP] PRINSEQ,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-Application [SEP] PRINSEQ,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PRINSEQ [SEP] B-AlternativeName [SEP] Pacific Biosciences
131,129,B-AlternativeName [SEP] Pacific Biosciences,B-Application [SEP] PacBio,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-Application [SEP] PacBio,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PacBio [SEP] B-AlternativeName [SEP] Pacific Biosciences
131,123,B-AlternativeName [SEP] Pacific Biosciences,B-AlternativeName [SEP] National Center for Biotechnology Information,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-AlternativeName [SEP] Pacific Biosciences
131,98,B-AlternativeName [SEP] Pacific Biosciences,B-AlternativeName [SEP] Maryland Super - Read Celera Assembler,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler [SEP] B-AlternativeName [SEP] Pacific Biosciences
131,8,B-AlternativeName [SEP] Pacific Biosciences,B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information [SEP] B-AlternativeName [SEP] Pacific Biosciences
131,29,B-AlternativeName [SEP] Pacific Biosciences,B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs [SEP] B-AlternativeName [SEP] Pacific Biosciences
131,27,B-AlternativeName [SEP] Pacific Biosciences,B-Application [SEP] BUSCO,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-Application [SEP] BUSCO,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BUSCO [SEP] B-AlternativeName [SEP] Pacific Biosciences
131,17,B-AlternativeName [SEP] Pacific Biosciences,B-AlternativeName [SEP] Basic Local Alignment Tool,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool [SEP] B-AlternativeName [SEP] Pacific Biosciences
131,15,B-AlternativeName [SEP] Pacific Biosciences,B-Application [SEP] BLAST,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-Application [SEP] BLAST,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BLAST [SEP] B-AlternativeName [SEP] Pacific Biosciences
131,6,B-AlternativeName [SEP] Pacific Biosciences,B-Application [SEP] AGOUTI,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-Application [SEP] AGOUTI,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] AGOUTI [SEP] B-AlternativeName [SEP] Pacific Biosciences
131,96,B-AlternativeName [SEP] Pacific Biosciences,B-Application [SEP] MaSuRCA,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-Application [SEP] MaSuRCA,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] MaSuRCA [SEP] B-AlternativeName [SEP] Pacific Biosciences
129,142,B-Application [SEP] PacBio,B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PacBio [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data [SEP] B-Application [SEP] PacBio
129,140,B-Application [SEP] PacBio,B-Application [SEP] PRINSEQ,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PacBio [SEP] B-Application [SEP] PRINSEQ,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PRINSEQ [SEP] B-Application [SEP] PacBio
129,131,B-Application [SEP] PacBio,B-AlternativeName [SEP] Pacific Biosciences,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PacBio [SEP] B-AlternativeName [SEP] Pacific Biosciences,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-Application [SEP] PacBio
129,123,B-Application [SEP] PacBio,B-AlternativeName [SEP] National Center for Biotechnology Information,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PacBio [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-Application [SEP] PacBio
129,98,B-Application [SEP] PacBio,B-AlternativeName [SEP] Maryland Super - Read Celera Assembler,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PacBio [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler [SEP] B-Application [SEP] PacBio
129,8,B-Application [SEP] PacBio,B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PacBio [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information [SEP] B-Application [SEP] PacBio
129,29,B-Application [SEP] PacBio,B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PacBio [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs [SEP] B-Application [SEP] PacBio
129,27,B-Application [SEP] PacBio,B-Application [SEP] BUSCO,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PacBio [SEP] B-Application [SEP] BUSCO,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BUSCO [SEP] B-Application [SEP] PacBio
129,17,B-Application [SEP] PacBio,B-AlternativeName [SEP] Basic Local Alignment Tool,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PacBio [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool [SEP] B-Application [SEP] PacBio
129,15,B-Application [SEP] PacBio,B-Application [SEP] BLAST,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PacBio [SEP] B-Application [SEP] BLAST,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BLAST [SEP] B-Application [SEP] PacBio
129,6,B-Application [SEP] PacBio,B-Application [SEP] AGOUTI,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PacBio [SEP] B-Application [SEP] AGOUTI,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] AGOUTI [SEP] B-Application [SEP] PacBio
129,96,B-Application [SEP] PacBio,B-Application [SEP] MaSuRCA,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PacBio [SEP] B-Application [SEP] MaSuRCA,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] MaSuRCA [SEP] B-Application [SEP] PacBio
123,142,B-AlternativeName [SEP] National Center for Biotechnology Information,B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information
123,140,B-AlternativeName [SEP] National Center for Biotechnology Information,B-Application [SEP] PRINSEQ,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-Application [SEP] PRINSEQ,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PRINSEQ [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information
123,131,B-AlternativeName [SEP] National Center for Biotechnology Information,B-AlternativeName [SEP] Pacific Biosciences,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-AlternativeName [SEP] Pacific Biosciences,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information
123,129,B-AlternativeName [SEP] National Center for Biotechnology Information,B-Application [SEP] PacBio,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-Application [SEP] PacBio,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PacBio [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information
123,98,B-AlternativeName [SEP] National Center for Biotechnology Information,B-AlternativeName [SEP] Maryland Super - Read Celera Assembler,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information
123,8,B-AlternativeName [SEP] National Center for Biotechnology Information,B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information
123,29,B-AlternativeName [SEP] National Center for Biotechnology Information,B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information
123,27,B-AlternativeName [SEP] National Center for Biotechnology Information,B-Application [SEP] BUSCO,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-Application [SEP] BUSCO,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BUSCO [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information
123,17,B-AlternativeName [SEP] National Center for Biotechnology Information,B-AlternativeName [SEP] Basic Local Alignment Tool,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information
123,15,B-AlternativeName [SEP] National Center for Biotechnology Information,B-Application [SEP] BLAST,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-Application [SEP] BLAST,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BLAST [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information
123,6,B-AlternativeName [SEP] National Center for Biotechnology Information,B-Application [SEP] AGOUTI,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-Application [SEP] AGOUTI,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] AGOUTI [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information
123,96,B-AlternativeName [SEP] National Center for Biotechnology Information,B-Application [SEP] MaSuRCA,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-Application [SEP] MaSuRCA,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] MaSuRCA [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information
98,142,B-AlternativeName [SEP] Maryland Super - Read Celera Assembler,B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler
98,140,B-AlternativeName [SEP] Maryland Super - Read Celera Assembler,B-Application [SEP] PRINSEQ,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler [SEP] B-Application [SEP] PRINSEQ,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PRINSEQ [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler
98,131,B-AlternativeName [SEP] Maryland Super - Read Celera Assembler,B-AlternativeName [SEP] Pacific Biosciences,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler [SEP] B-AlternativeName [SEP] Pacific Biosciences,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler
98,129,B-AlternativeName [SEP] Maryland Super - Read Celera Assembler,B-Application [SEP] PacBio,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler [SEP] B-Application [SEP] PacBio,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PacBio [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler
98,123,B-AlternativeName [SEP] Maryland Super - Read Celera Assembler,B-AlternativeName [SEP] National Center for Biotechnology Information,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler
98,8,B-AlternativeName [SEP] Maryland Super - Read Celera Assembler,B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler
98,29,B-AlternativeName [SEP] Maryland Super - Read Celera Assembler,B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler
98,27,B-AlternativeName [SEP] Maryland Super - Read Celera Assembler,B-Application [SEP] BUSCO,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler [SEP] B-Application [SEP] BUSCO,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BUSCO [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler
98,17,B-AlternativeName [SEP] Maryland Super - Read Celera Assembler,B-AlternativeName [SEP] Basic Local Alignment Tool,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler
98,15,B-AlternativeName [SEP] Maryland Super - Read Celera Assembler,B-Application [SEP] BLAST,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler [SEP] B-Application [SEP] BLAST,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BLAST [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler
98,6,B-AlternativeName [SEP] Maryland Super - Read Celera Assembler,B-Application [SEP] AGOUTI,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler [SEP] B-Application [SEP] AGOUTI,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] AGOUTI [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler
98,96,B-AlternativeName [SEP] Maryland Super - Read Celera Assembler,B-Application [SEP] MaSuRCA,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler [SEP] B-Application [SEP] MaSuRCA,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] MaSuRCA [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler
8,142,B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information,B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information
8,140,B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information,B-Application [SEP] PRINSEQ,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information [SEP] B-Application [SEP] PRINSEQ,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PRINSEQ [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information
8,131,B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information,B-AlternativeName [SEP] Pacific Biosciences,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information [SEP] B-AlternativeName [SEP] Pacific Biosciences,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information
8,129,B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information,B-Application [SEP] PacBio,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information [SEP] B-Application [SEP] PacBio,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PacBio [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information
8,123,B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information,B-AlternativeName [SEP] National Center for Biotechnology Information,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information
8,98,B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information,B-AlternativeName [SEP] Maryland Super - Read Celera Assembler,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information
8,29,B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information,B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information
8,27,B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information,B-Application [SEP] BUSCO,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information [SEP] B-Application [SEP] BUSCO,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BUSCO [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information
8,17,B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information,B-AlternativeName [SEP] Basic Local Alignment Tool,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information
8,15,B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information,B-Application [SEP] BLAST,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information [SEP] B-Application [SEP] BLAST,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BLAST [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information
8,6,B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information,B-Application [SEP] AGOUTI,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information [SEP] B-Application [SEP] AGOUTI,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] AGOUTI [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information
8,96,B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information,B-Application [SEP] MaSuRCA,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information [SEP] B-Application [SEP] MaSuRCA,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] MaSuRCA [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information
29,142,B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs,B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs
29,140,B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs,B-Application [SEP] PRINSEQ,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs [SEP] B-Application [SEP] PRINSEQ,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PRINSEQ [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs
29,131,B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs,B-AlternativeName [SEP] Pacific Biosciences,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs [SEP] B-AlternativeName [SEP] Pacific Biosciences,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs
29,129,B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs,B-Application [SEP] PacBio,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs [SEP] B-Application [SEP] PacBio,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PacBio [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs
29,123,B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs,B-AlternativeName [SEP] National Center for Biotechnology Information,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs
29,98,B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs,B-AlternativeName [SEP] Maryland Super - Read Celera Assembler,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs
29,8,B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs,B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs
29,27,B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs,B-Application [SEP] BUSCO,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs [SEP] B-Application [SEP] BUSCO,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BUSCO [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs
29,17,B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs,B-AlternativeName [SEP] Basic Local Alignment Tool,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs
29,15,B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs,B-Application [SEP] BLAST,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs [SEP] B-Application [SEP] BLAST,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BLAST [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs
29,6,B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs,B-Application [SEP] AGOUTI,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs [SEP] B-Application [SEP] AGOUTI,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] AGOUTI [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs
29,96,B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs,B-Application [SEP] MaSuRCA,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs [SEP] B-Application [SEP] MaSuRCA,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] MaSuRCA [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs
27,142,B-Application [SEP] BUSCO,B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BUSCO [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data [SEP] B-Application [SEP] BUSCO
27,140,B-Application [SEP] BUSCO,B-Application [SEP] PRINSEQ,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BUSCO [SEP] B-Application [SEP] PRINSEQ,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PRINSEQ [SEP] B-Application [SEP] BUSCO
27,131,B-Application [SEP] BUSCO,B-AlternativeName [SEP] Pacific Biosciences,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BUSCO [SEP] B-AlternativeName [SEP] Pacific Biosciences,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-Application [SEP] BUSCO
27,129,B-Application [SEP] BUSCO,B-Application [SEP] PacBio,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BUSCO [SEP] B-Application [SEP] PacBio,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PacBio [SEP] B-Application [SEP] BUSCO
27,123,B-Application [SEP] BUSCO,B-AlternativeName [SEP] National Center for Biotechnology Information,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BUSCO [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-Application [SEP] BUSCO
27,98,B-Application [SEP] BUSCO,B-AlternativeName [SEP] Maryland Super - Read Celera Assembler,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BUSCO [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler [SEP] B-Application [SEP] BUSCO
27,8,B-Application [SEP] BUSCO,B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BUSCO [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information [SEP] B-Application [SEP] BUSCO
27,29,B-Application [SEP] BUSCO,B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BUSCO [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs [SEP] B-Application [SEP] BUSCO
27,17,B-Application [SEP] BUSCO,B-AlternativeName [SEP] Basic Local Alignment Tool,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BUSCO [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool [SEP] B-Application [SEP] BUSCO
27,15,B-Application [SEP] BUSCO,B-Application [SEP] BLAST,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BUSCO [SEP] B-Application [SEP] BLAST,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BLAST [SEP] B-Application [SEP] BUSCO
27,6,B-Application [SEP] BUSCO,B-Application [SEP] AGOUTI,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BUSCO [SEP] B-Application [SEP] AGOUTI,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] AGOUTI [SEP] B-Application [SEP] BUSCO
27,96,B-Application [SEP] BUSCO,B-Application [SEP] MaSuRCA,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BUSCO [SEP] B-Application [SEP] MaSuRCA,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] MaSuRCA [SEP] B-Application [SEP] BUSCO
17,142,B-AlternativeName [SEP] Basic Local Alignment Tool,B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool
17,140,B-AlternativeName [SEP] Basic Local Alignment Tool,B-Application [SEP] PRINSEQ,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool [SEP] B-Application [SEP] PRINSEQ,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PRINSEQ [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool
17,131,B-AlternativeName [SEP] Basic Local Alignment Tool,B-AlternativeName [SEP] Pacific Biosciences,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool [SEP] B-AlternativeName [SEP] Pacific Biosciences,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool
17,129,B-AlternativeName [SEP] Basic Local Alignment Tool,B-Application [SEP] PacBio,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool [SEP] B-Application [SEP] PacBio,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PacBio [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool
17,123,B-AlternativeName [SEP] Basic Local Alignment Tool,B-AlternativeName [SEP] National Center for Biotechnology Information,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool
17,98,B-AlternativeName [SEP] Basic Local Alignment Tool,B-AlternativeName [SEP] Maryland Super - Read Celera Assembler,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool
17,8,B-AlternativeName [SEP] Basic Local Alignment Tool,B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool
17,29,B-AlternativeName [SEP] Basic Local Alignment Tool,B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool
17,27,B-AlternativeName [SEP] Basic Local Alignment Tool,B-Application [SEP] BUSCO,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool [SEP] B-Application [SEP] BUSCO,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BUSCO [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool
17,15,B-AlternativeName [SEP] Basic Local Alignment Tool,B-Application [SEP] BLAST,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool [SEP] B-Application [SEP] BLAST,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BLAST [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool
17,6,B-AlternativeName [SEP] Basic Local Alignment Tool,B-Application [SEP] AGOUTI,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool [SEP] B-Application [SEP] AGOUTI,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] AGOUTI [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool
17,96,B-AlternativeName [SEP] Basic Local Alignment Tool,B-Application [SEP] MaSuRCA,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool [SEP] B-Application [SEP] MaSuRCA,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] MaSuRCA [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool
15,142,B-Application [SEP] BLAST,B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BLAST [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data [SEP] B-Application [SEP] BLAST
15,140,B-Application [SEP] BLAST,B-Application [SEP] PRINSEQ,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BLAST [SEP] B-Application [SEP] PRINSEQ,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PRINSEQ [SEP] B-Application [SEP] BLAST
15,131,B-Application [SEP] BLAST,B-AlternativeName [SEP] Pacific Biosciences,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BLAST [SEP] B-AlternativeName [SEP] Pacific Biosciences,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-Application [SEP] BLAST
15,129,B-Application [SEP] BLAST,B-Application [SEP] PacBio,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BLAST [SEP] B-Application [SEP] PacBio,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PacBio [SEP] B-Application [SEP] BLAST
15,123,B-Application [SEP] BLAST,B-AlternativeName [SEP] National Center for Biotechnology Information,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BLAST [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-Application [SEP] BLAST
15,98,B-Application [SEP] BLAST,B-AlternativeName [SEP] Maryland Super - Read Celera Assembler,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BLAST [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler [SEP] B-Application [SEP] BLAST
15,8,B-Application [SEP] BLAST,B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BLAST [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information [SEP] B-Application [SEP] BLAST
15,29,B-Application [SEP] BLAST,B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BLAST [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs [SEP] B-Application [SEP] BLAST
15,27,B-Application [SEP] BLAST,B-Application [SEP] BUSCO,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BLAST [SEP] B-Application [SEP] BUSCO,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BUSCO [SEP] B-Application [SEP] BLAST
15,17,B-Application [SEP] BLAST,B-AlternativeName [SEP] Basic Local Alignment Tool,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BLAST [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool [SEP] B-Application [SEP] BLAST
15,6,B-Application [SEP] BLAST,B-Application [SEP] AGOUTI,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BLAST [SEP] B-Application [SEP] AGOUTI,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] AGOUTI [SEP] B-Application [SEP] BLAST
15,96,B-Application [SEP] BLAST,B-Application [SEP] MaSuRCA,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BLAST [SEP] B-Application [SEP] MaSuRCA,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] MaSuRCA [SEP] B-Application [SEP] BLAST
6,142,B-Application [SEP] AGOUTI,B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] AGOUTI [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data [SEP] B-Application [SEP] AGOUTI
6,140,B-Application [SEP] AGOUTI,B-Application [SEP] PRINSEQ,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] AGOUTI [SEP] B-Application [SEP] PRINSEQ,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PRINSEQ [SEP] B-Application [SEP] AGOUTI
6,131,B-Application [SEP] AGOUTI,B-AlternativeName [SEP] Pacific Biosciences,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] AGOUTI [SEP] B-AlternativeName [SEP] Pacific Biosciences,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-Application [SEP] AGOUTI
6,129,B-Application [SEP] AGOUTI,B-Application [SEP] PacBio,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] AGOUTI [SEP] B-Application [SEP] PacBio,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PacBio [SEP] B-Application [SEP] AGOUTI
6,123,B-Application [SEP] AGOUTI,B-AlternativeName [SEP] National Center for Biotechnology Information,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] AGOUTI [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-Application [SEP] AGOUTI
6,98,B-Application [SEP] AGOUTI,B-AlternativeName [SEP] Maryland Super - Read Celera Assembler,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] AGOUTI [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler [SEP] B-Application [SEP] AGOUTI
6,8,B-Application [SEP] AGOUTI,B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] AGOUTI [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information [SEP] B-Application [SEP] AGOUTI
6,29,B-Application [SEP] AGOUTI,B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] AGOUTI [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs [SEP] B-Application [SEP] AGOUTI
6,27,B-Application [SEP] AGOUTI,B-Application [SEP] BUSCO,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] AGOUTI [SEP] B-Application [SEP] BUSCO,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BUSCO [SEP] B-Application [SEP] AGOUTI
6,17,B-Application [SEP] AGOUTI,B-AlternativeName [SEP] Basic Local Alignment Tool,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] AGOUTI [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool [SEP] B-Application [SEP] AGOUTI
6,15,B-Application [SEP] AGOUTI,B-Application [SEP] BLAST,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] AGOUTI [SEP] B-Application [SEP] BLAST,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BLAST [SEP] B-Application [SEP] AGOUTI
6,96,B-Application [SEP] AGOUTI,B-Application [SEP] MaSuRCA,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] AGOUTI [SEP] B-Application [SEP] MaSuRCA,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] MaSuRCA [SEP] B-Application [SEP] AGOUTI
96,142,B-Application [SEP] MaSuRCA,B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] MaSuRCA [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] PReprocessing and INformation of SEQuence data [SEP] B-Application [SEP] MaSuRCA
96,140,B-Application [SEP] MaSuRCA,B-Application [SEP] PRINSEQ,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] MaSuRCA [SEP] B-Application [SEP] PRINSEQ,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PRINSEQ [SEP] B-Application [SEP] MaSuRCA
96,131,B-Application [SEP] MaSuRCA,B-AlternativeName [SEP] Pacific Biosciences,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] MaSuRCA [SEP] B-AlternativeName [SEP] Pacific Biosciences,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-Application [SEP] MaSuRCA
96,129,B-Application [SEP] MaSuRCA,B-Application [SEP] PacBio,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] MaSuRCA [SEP] B-Application [SEP] PacBio,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] PacBio [SEP] B-Application [SEP] MaSuRCA
96,123,B-Application [SEP] MaSuRCA,B-AlternativeName [SEP] National Center for Biotechnology Information,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] MaSuRCA [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-Application [SEP] MaSuRCA
96,98,B-Application [SEP] MaSuRCA,B-AlternativeName [SEP] Maryland Super - Read Celera Assembler,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] MaSuRCA [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Maryland Super - Read Celera Assembler [SEP] B-Application [SEP] MaSuRCA
96,8,B-Application [SEP] MaSuRCA,B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] MaSuRCA [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Annotated Genome Optimization Using Transcriptome Information [SEP] B-Application [SEP] MaSuRCA
96,29,B-Application [SEP] MaSuRCA,B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] MaSuRCA [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single Copy Orthologs [SEP] B-Application [SEP] MaSuRCA
96,27,B-Application [SEP] MaSuRCA,B-Application [SEP] BUSCO,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] MaSuRCA [SEP] B-Application [SEP] BUSCO,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BUSCO [SEP] B-Application [SEP] MaSuRCA
96,17,B-Application [SEP] MaSuRCA,B-AlternativeName [SEP] Basic Local Alignment Tool,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] MaSuRCA [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-AlternativeName [SEP] Basic Local Alignment Tool [SEP] B-Application [SEP] MaSuRCA
96,15,B-Application [SEP] MaSuRCA,B-Application [SEP] BLAST,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] MaSuRCA [SEP] B-Application [SEP] BLAST,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] BLAST [SEP] B-Application [SEP] MaSuRCA
96,6,B-Application [SEP] MaSuRCA,B-Application [SEP] AGOUTI,100,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : .,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] MaSuRCA [SEP] B-Application [SEP] AGOUTI,AED : annotation edit distance ; AGOUTI : Annotated Genome Optimization Using Transcriptome Information ; BLAST : Basic Local Alignment Tool ; bp : base pair ; BUSCO : Benchmarking Universal Single Copy Orthologs ; CEG : core eukaryotic gene ; Cz : Cretaceous period ; Dsil : Dysdera silvatica ; Gb : gigabase pairs ; GC : guanine cytosine ; GO : Gene Ontology ; HCR : high - coverage regions ; Isca : Ixodes scapularis ; kb : kilobase pairs ; LINE : long interspersed nuclear element ; LTR : long terminal repeats ; MaSuRCA : Maryland Super - Read Celera Assembler ; Mb : megabase pairs ; MP : mate pair ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; PRINSEQ : PReprocessing and INformation of SEQuence data ; Ptep : Parasteatoda tepidariorum ; RNAseq : RNA sequencing ; SINE : short interspersed nuclear element ; Smim : Stegodyphus mimosarum ; SMRT : . [SEP] B-Application [SEP] AGOUTI [SEP] B-Application [SEP] MaSuRCA
27,29,B-Application [SEP] BluePippin,B-Developer [SEP] Sage Science,101,"For PacBio library construction , the genomic DNA of C . mollissima was sheared to 20 kb , and fragments shorter than 7 kb were filtered using BluePippin ( Sage Science , Beverly , MA , USA ) .","For PacBio library construction , the genomic DNA of C . mollissima was sheared to 20 kb , and fragments shorter than 7 kb were filtered using BluePippin ( Sage Science , Beverly , MA , USA ) . [SEP] B-Application [SEP] BluePippin [SEP] B-Developer [SEP] Sage Science","For PacBio library construction , the genomic DNA of C . mollissima was sheared to 20 kb , and fragments shorter than 7 kb were filtered using BluePippin ( Sage Science , Beverly , MA , USA ) . [SEP] B-Developer [SEP] Sage Science [SEP] B-Application [SEP] BluePippin"
29,27,B-Developer [SEP] Sage Science,B-Application [SEP] BluePippin,101,"For PacBio library construction , the genomic DNA of C . mollissima was sheared to 20 kb , and fragments shorter than 7 kb were filtered using BluePippin ( Sage Science , Beverly , MA , USA ) .","For PacBio library construction , the genomic DNA of C . mollissima was sheared to 20 kb , and fragments shorter than 7 kb were filtered using BluePippin ( Sage Science , Beverly , MA , USA ) . [SEP] B-Developer [SEP] Sage Science [SEP] B-Application [SEP] BluePippin","For PacBio library construction , the genomic DNA of C . mollissima was sheared to 20 kb , and fragments shorter than 7 kb were filtered using BluePippin ( Sage Science , Beverly , MA , USA ) . [SEP] B-Application [SEP] BluePippin [SEP] B-Developer [SEP] Sage Science"
20,14,B-Developer [SEP] Pacific Biosciences,B-Application [SEP] PacBio DNA Template Preparation Kit,102,"The filtered DNA was then used to prepare a proprietary SMRTbell library using the PacBio DNA Template Preparation Kit ( Pacific Biosciences , Menlo Park , CA , USA ) .","The filtered DNA was then used to prepare a proprietary SMRTbell library using the PacBio DNA Template Preparation Kit ( Pacific Biosciences , Menlo Park , CA , USA ) . [SEP] B-Developer [SEP] Pacific Biosciences [SEP] B-Application [SEP] PacBio DNA Template Preparation Kit","The filtered DNA was then used to prepare a proprietary SMRTbell library using the PacBio DNA Template Preparation Kit ( Pacific Biosciences , Menlo Park , CA , USA ) . [SEP] B-Application [SEP] PacBio DNA Template Preparation Kit [SEP] B-Developer [SEP] Pacific Biosciences"
14,20,B-Application [SEP] PacBio DNA Template Preparation Kit,B-Developer [SEP] Pacific Biosciences,102,"The filtered DNA was then used to prepare a proprietary SMRTbell library using the PacBio DNA Template Preparation Kit ( Pacific Biosciences , Menlo Park , CA , USA ) .","The filtered DNA was then used to prepare a proprietary SMRTbell library using the PacBio DNA Template Preparation Kit ( Pacific Biosciences , Menlo Park , CA , USA ) . [SEP] B-Application [SEP] PacBio DNA Template Preparation Kit [SEP] B-Developer [SEP] Pacific Biosciences","The filtered DNA was then used to prepare a proprietary SMRTbell library using the PacBio DNA Template Preparation Kit ( Pacific Biosciences , Menlo Park , CA , USA ) . [SEP] B-Developer [SEP] Pacific Biosciences [SEP] B-Application [SEP] PacBio DNA Template Preparation Kit"
24,26,B-Application [SEP] SMRT Link,B-Version [SEP] 6 . 0,103,"The PacBio data quality control standard of RQ > 0 . 75 was used , and the minimum subread length was 500 bp using SMRT Link 6 . 0 software .","The PacBio data quality control standard of RQ > 0 . 75 was used , and the minimum subread length was 500 bp using SMRT Link 6 . 0 software . [SEP] B-Application [SEP] SMRT Link [SEP] B-Version [SEP] 6 . 0","The PacBio data quality control standard of RQ > 0 . 75 was used , and the minimum subread length was 500 bp using SMRT Link 6 . 0 software . [SEP] B-Version [SEP] 6 . 0 [SEP] B-Application [SEP] SMRT Link"
26,24,B-Version [SEP] 6 . 0,B-Application [SEP] SMRT Link,103,"The PacBio data quality control standard of RQ > 0 . 75 was used , and the minimum subread length was 500 bp using SMRT Link 6 . 0 software .","The PacBio data quality control standard of RQ > 0 . 75 was used , and the minimum subread length was 500 bp using SMRT Link 6 . 0 software . [SEP] B-Version [SEP] 6 . 0 [SEP] B-Application [SEP] SMRT Link","The PacBio data quality control standard of RQ > 0 . 75 was used , and the minimum subread length was 500 bp using SMRT Link 6 . 0 software . [SEP] B-Application [SEP] SMRT Link [SEP] B-Version [SEP] 6 . 0"
7,9,B-Application [SEP] Quiver,B-Application [SEP] SMRT Analysis,104,The assembled sequence was then polished using Quiver ( SMRT Analysis version 2 . 3 . 0 ) with the default parameters .,The assembled sequence was then polished using Quiver ( SMRT Analysis version 2 . 3 . 0 ) with the default parameters . [SEP] B-Application [SEP] Quiver [SEP] B-Application [SEP] SMRT Analysis,The assembled sequence was then polished using Quiver ( SMRT Analysis version 2 . 3 . 0 ) with the default parameters . [SEP] B-Application [SEP] SMRT Analysis [SEP] B-Application [SEP] Quiver
7,12,B-Application [SEP] Quiver,B-Version [SEP] 2 . 3 . 0,104,The assembled sequence was then polished using Quiver ( SMRT Analysis version 2 . 3 . 0 ) with the default parameters .,The assembled sequence was then polished using Quiver ( SMRT Analysis version 2 . 3 . 0 ) with the default parameters . [SEP] B-Application [SEP] Quiver [SEP] B-Version [SEP] 2 . 3 . 0,The assembled sequence was then polished using Quiver ( SMRT Analysis version 2 . 3 . 0 ) with the default parameters . [SEP] B-Version [SEP] 2 . 3 . 0 [SEP] B-Application [SEP] Quiver
9,7,B-Application [SEP] SMRT Analysis,B-Application [SEP] Quiver,104,The assembled sequence was then polished using Quiver ( SMRT Analysis version 2 . 3 . 0 ) with the default parameters .,The assembled sequence was then polished using Quiver ( SMRT Analysis version 2 . 3 . 0 ) with the default parameters . [SEP] B-Application [SEP] SMRT Analysis [SEP] B-Application [SEP] Quiver,The assembled sequence was then polished using Quiver ( SMRT Analysis version 2 . 3 . 0 ) with the default parameters . [SEP] B-Application [SEP] Quiver [SEP] B-Application [SEP] SMRT Analysis
9,12,B-Application [SEP] SMRT Analysis,B-Version [SEP] 2 . 3 . 0,104,The assembled sequence was then polished using Quiver ( SMRT Analysis version 2 . 3 . 0 ) with the default parameters .,The assembled sequence was then polished using Quiver ( SMRT Analysis version 2 . 3 . 0 ) with the default parameters . [SEP] B-Application [SEP] SMRT Analysis [SEP] B-Version [SEP] 2 . 3 . 0,The assembled sequence was then polished using Quiver ( SMRT Analysis version 2 . 3 . 0 ) with the default parameters . [SEP] B-Version [SEP] 2 . 3 . 0 [SEP] B-Application [SEP] SMRT Analysis
12,7,B-Version [SEP] 2 . 3 . 0,B-Application [SEP] Quiver,104,The assembled sequence was then polished using Quiver ( SMRT Analysis version 2 . 3 . 0 ) with the default parameters .,The assembled sequence was then polished using Quiver ( SMRT Analysis version 2 . 3 . 0 ) with the default parameters . [SEP] B-Version [SEP] 2 . 3 . 0 [SEP] B-Application [SEP] Quiver,The assembled sequence was then polished using Quiver ( SMRT Analysis version 2 . 3 . 0 ) with the default parameters . [SEP] B-Application [SEP] Quiver [SEP] B-Version [SEP] 2 . 3 . 0
12,9,B-Version [SEP] 2 . 3 . 0,B-Application [SEP] SMRT Analysis,104,The assembled sequence was then polished using Quiver ( SMRT Analysis version 2 . 3 . 0 ) with the default parameters .,The assembled sequence was then polished using Quiver ( SMRT Analysis version 2 . 3 . 0 ) with the default parameters . [SEP] B-Version [SEP] 2 . 3 . 0 [SEP] B-Application [SEP] SMRT Analysis,The assembled sequence was then polished using Quiver ( SMRT Analysis version 2 . 3 . 0 ) with the default parameters . [SEP] B-Application [SEP] SMRT Analysis [SEP] B-Version [SEP] 2 . 3 . 0
1,3,B-Application [SEP] RepeatModeler,B-Application [SEP] RepeatMasker,105,"Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats .","Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats . [SEP] B-Application [SEP] RepeatModeler [SEP] B-Application [SEP] RepeatMasker","Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats . [SEP] B-Application [SEP] RepeatMasker [SEP] B-Application [SEP] RepeatModeler"
1,5,B-Application [SEP] RepeatModeler,B-Application [SEP] RepeatMasker,105,"Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats .","Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats . [SEP] B-Application [SEP] RepeatModeler [SEP] B-Application [SEP] RepeatMasker","Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats . [SEP] B-Application [SEP] RepeatMasker [SEP] B-Application [SEP] RepeatModeler"
1,7,B-Application [SEP] RepeatModeler,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012954,105,"Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats .","Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats . [SEP] B-Application [SEP] RepeatModeler [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012954","Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 [SEP] B-Application [SEP] RepeatModeler"
1,9,B-Application [SEP] RepeatModeler,B-Citation [SEP] [ 26 ],105,"Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats .","Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats . [SEP] B-Application [SEP] RepeatModeler [SEP] B-Citation [SEP] [ 26 ]","Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats . [SEP] B-Citation [SEP] [ 26 ] [SEP] B-Application [SEP] RepeatModeler"
3,1,B-Application [SEP] RepeatMasker,B-Application [SEP] RepeatModeler,105,"Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats .","Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats . [SEP] B-Application [SEP] RepeatMasker [SEP] B-Application [SEP] RepeatModeler","Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats . [SEP] B-Application [SEP] RepeatModeler [SEP] B-Application [SEP] RepeatMasker"
3,7,B-Application [SEP] RepeatMasker,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012954,105,"Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats .","Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats . [SEP] B-Application [SEP] RepeatMasker [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012954","Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 [SEP] B-Application [SEP] RepeatMasker"
3,9,B-Application [SEP] RepeatMasker,B-Citation [SEP] [ 26 ],105,"Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats .","Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats . [SEP] B-Application [SEP] RepeatMasker [SEP] B-Citation [SEP] [ 26 ]","Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats . [SEP] B-Citation [SEP] [ 26 ] [SEP] B-Application [SEP] RepeatMasker"
5,1,B-Application [SEP] RepeatMasker,B-Application [SEP] RepeatModeler,105,"Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats .","Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats . [SEP] B-Application [SEP] RepeatMasker [SEP] B-Application [SEP] RepeatModeler","Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats . [SEP] B-Application [SEP] RepeatModeler [SEP] B-Application [SEP] RepeatMasker"
5,7,B-Application [SEP] RepeatMasker,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012954,105,"Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats .","Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats . [SEP] B-Application [SEP] RepeatMasker [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012954","Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 [SEP] B-Application [SEP] RepeatMasker"
5,9,B-Application [SEP] RepeatMasker,B-Citation [SEP] [ 26 ],105,"Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats .","Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats . [SEP] B-Application [SEP] RepeatMasker [SEP] B-Citation [SEP] [ 26 ]","Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats . [SEP] B-Citation [SEP] [ 26 ] [SEP] B-Application [SEP] RepeatMasker"
7,1,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012954,B-Application [SEP] RepeatModeler,105,"Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats .","Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 [SEP] B-Application [SEP] RepeatModeler","Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats . [SEP] B-Application [SEP] RepeatModeler [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012954"
7,3,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012954,B-Application [SEP] RepeatMasker,105,"Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats .","Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 [SEP] B-Application [SEP] RepeatMasker","Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats . [SEP] B-Application [SEP] RepeatMasker [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012954"
7,5,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012954,B-Application [SEP] RepeatMasker,105,"Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats .","Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 [SEP] B-Application [SEP] RepeatMasker","Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats . [SEP] B-Application [SEP] RepeatMasker [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012954"
7,9,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012954,B-Citation [SEP] [ 26 ],105,"Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats .","Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 [SEP] B-Citation [SEP] [ 26 ]","Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats . [SEP] B-Citation [SEP] [ 26 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012954"
9,1,B-Citation [SEP] [ 26 ],B-Application [SEP] RepeatModeler,105,"Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats .","Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats . [SEP] B-Citation [SEP] [ 26 ] [SEP] B-Application [SEP] RepeatModeler","Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats . [SEP] B-Application [SEP] RepeatModeler [SEP] B-Citation [SEP] [ 26 ]"
9,3,B-Citation [SEP] [ 26 ],B-Application [SEP] RepeatMasker,105,"Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats .","Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats . [SEP] B-Citation [SEP] [ 26 ] [SEP] B-Application [SEP] RepeatMasker","Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats . [SEP] B-Application [SEP] RepeatMasker [SEP] B-Citation [SEP] [ 26 ]"
9,5,B-Citation [SEP] [ 26 ],B-Application [SEP] RepeatMasker,105,"Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats .","Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats . [SEP] B-Citation [SEP] [ 26 ] [SEP] B-Application [SEP] RepeatMasker","Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats . [SEP] B-Application [SEP] RepeatMasker [SEP] B-Citation [SEP] [ 26 ]"
9,7,B-Citation [SEP] [ 26 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012954,105,"Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats .","Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats . [SEP] B-Citation [SEP] [ 26 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012954","Both RepeatModeler and RepeatMasker ( RepeatMasker , https://scicrunch.org/resolver/RRID:SCR_012954 ) [ 26 ] were used for the de novo identification and masking of repeats . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012954 [SEP] B-Citation [SEP] [ 26 ]"
9,33,B-Application [SEP] (,B-Version [SEP] SNAP,106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] ( [SEP] B-Version [SEP] SNAP","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Version [SEP] SNAP [SEP] B-Application [SEP] ("
9,32,B-Application [SEP] (,B-Application [SEP] and,106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] ( [SEP] B-Application [SEP] and","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] and [SEP] B-Application [SEP] ("
9,26,B-Application [SEP] (,B-Version [SEP] version 4 .,106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] ( [SEP] B-Version [SEP] version 4 .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Version [SEP] version 4 . [SEP] B-Application [SEP] ("
9,7,B-Application [SEP] (,B-Application [SEP] with,106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] ( [SEP] B-Application [SEP] with","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] with [SEP] B-Application [SEP] ("
9,14,B-Application [SEP] (,B-Version [SEP] version 3 . 2 .,106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] ( [SEP] B-Version [SEP] version 3 . 2 .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Version [SEP] version 3 . 2 . [SEP] B-Application [SEP] ("
9,11,B-Application [SEP] (,"B-URL [SEP] ,",106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] ( [SEP] B-URL [SEP] ,","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-URL [SEP] , [SEP] B-Application [SEP] ("
9,21,B-Application [SEP] (,"B-Application [SEP] , GeneMark -",106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] ( [SEP] B-Application [SEP] , GeneMark -","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] , GeneMark - [SEP] B-Application [SEP] ("
33,9,B-Version [SEP] SNAP,B-Application [SEP] (,106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Version [SEP] SNAP [SEP] B-Application [SEP] (","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] ( [SEP] B-Version [SEP] SNAP"
33,32,B-Version [SEP] SNAP,B-Application [SEP] and,106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Version [SEP] SNAP [SEP] B-Application [SEP] and","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] and [SEP] B-Version [SEP] SNAP"
33,26,B-Version [SEP] SNAP,B-Version [SEP] version 4 .,106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Version [SEP] SNAP [SEP] B-Version [SEP] version 4 .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Version [SEP] version 4 . [SEP] B-Version [SEP] SNAP"
33,7,B-Version [SEP] SNAP,B-Application [SEP] with,106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Version [SEP] SNAP [SEP] B-Application [SEP] with","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] with [SEP] B-Version [SEP] SNAP"
33,14,B-Version [SEP] SNAP,B-Version [SEP] version 3 . 2 .,106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Version [SEP] SNAP [SEP] B-Version [SEP] version 3 . 2 .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Version [SEP] version 3 . 2 . [SEP] B-Version [SEP] SNAP"
33,11,B-Version [SEP] SNAP,"B-URL [SEP] ,",106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Version [SEP] SNAP [SEP] B-URL [SEP] ,","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-URL [SEP] , [SEP] B-Version [SEP] SNAP"
33,21,B-Version [SEP] SNAP,"B-Application [SEP] , GeneMark -",106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Version [SEP] SNAP [SEP] B-Application [SEP] , GeneMark -","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] , GeneMark - [SEP] B-Version [SEP] SNAP"
32,9,B-Application [SEP] and,B-Application [SEP] (,106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] and [SEP] B-Application [SEP] (","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] ( [SEP] B-Application [SEP] and"
32,33,B-Application [SEP] and,B-Version [SEP] SNAP,106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] and [SEP] B-Version [SEP] SNAP","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Version [SEP] SNAP [SEP] B-Application [SEP] and"
32,26,B-Application [SEP] and,B-Version [SEP] version 4 .,106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] and [SEP] B-Version [SEP] version 4 .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Version [SEP] version 4 . [SEP] B-Application [SEP] and"
32,7,B-Application [SEP] and,B-Application [SEP] with,106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] and [SEP] B-Application [SEP] with","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] with [SEP] B-Application [SEP] and"
32,14,B-Application [SEP] and,B-Version [SEP] version 3 . 2 .,106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] and [SEP] B-Version [SEP] version 3 . 2 .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Version [SEP] version 3 . 2 . [SEP] B-Application [SEP] and"
32,11,B-Application [SEP] and,"B-URL [SEP] ,",106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] and [SEP] B-URL [SEP] ,","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-URL [SEP] , [SEP] B-Application [SEP] and"
32,21,B-Application [SEP] and,"B-Application [SEP] , GeneMark -",106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] and [SEP] B-Application [SEP] , GeneMark -","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] , GeneMark - [SEP] B-Application [SEP] and"
26,9,B-Version [SEP] version 4 .,B-Application [SEP] (,106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Version [SEP] version 4 . [SEP] B-Application [SEP] (","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] ( [SEP] B-Version [SEP] version 4 ."
26,33,B-Version [SEP] version 4 .,B-Version [SEP] SNAP,106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Version [SEP] version 4 . [SEP] B-Version [SEP] SNAP","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Version [SEP] SNAP [SEP] B-Version [SEP] version 4 ."
26,32,B-Version [SEP] version 4 .,B-Application [SEP] and,106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Version [SEP] version 4 . [SEP] B-Application [SEP] and","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] and [SEP] B-Version [SEP] version 4 ."
26,7,B-Version [SEP] version 4 .,B-Application [SEP] with,106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Version [SEP] version 4 . [SEP] B-Application [SEP] with","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] with [SEP] B-Version [SEP] version 4 ."
26,14,B-Version [SEP] version 4 .,B-Version [SEP] version 3 . 2 .,106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Version [SEP] version 4 . [SEP] B-Version [SEP] version 3 . 2 .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Version [SEP] version 3 . 2 . [SEP] B-Version [SEP] version 4 ."
26,11,B-Version [SEP] version 4 .,"B-URL [SEP] ,",106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Version [SEP] version 4 . [SEP] B-URL [SEP] ,","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-URL [SEP] , [SEP] B-Version [SEP] version 4 ."
26,21,B-Version [SEP] version 4 .,"B-Application [SEP] , GeneMark -",106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Version [SEP] version 4 . [SEP] B-Application [SEP] , GeneMark -","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] , GeneMark - [SEP] B-Version [SEP] version 4 ."
7,9,B-Application [SEP] with,B-Application [SEP] (,106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] with [SEP] B-Application [SEP] (","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] ( [SEP] B-Application [SEP] with"
7,33,B-Application [SEP] with,B-Version [SEP] SNAP,106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] with [SEP] B-Version [SEP] SNAP","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Version [SEP] SNAP [SEP] B-Application [SEP] with"
7,32,B-Application [SEP] with,B-Application [SEP] and,106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] with [SEP] B-Application [SEP] and","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] and [SEP] B-Application [SEP] with"
7,26,B-Application [SEP] with,B-Version [SEP] version 4 .,106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] with [SEP] B-Version [SEP] version 4 .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Version [SEP] version 4 . [SEP] B-Application [SEP] with"
7,14,B-Application [SEP] with,B-Version [SEP] version 3 . 2 .,106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] with [SEP] B-Version [SEP] version 3 . 2 .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Version [SEP] version 3 . 2 . [SEP] B-Application [SEP] with"
7,11,B-Application [SEP] with,"B-URL [SEP] ,",106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] with [SEP] B-URL [SEP] ,","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-URL [SEP] , [SEP] B-Application [SEP] with"
7,21,B-Application [SEP] with,"B-Application [SEP] , GeneMark -",106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] with [SEP] B-Application [SEP] , GeneMark -","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] , GeneMark - [SEP] B-Application [SEP] with"
14,9,B-Version [SEP] version 3 . 2 .,B-Application [SEP] (,106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Version [SEP] version 3 . 2 . [SEP] B-Application [SEP] (","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] ( [SEP] B-Version [SEP] version 3 . 2 ."
14,33,B-Version [SEP] version 3 . 2 .,B-Version [SEP] SNAP,106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Version [SEP] version 3 . 2 . [SEP] B-Version [SEP] SNAP","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Version [SEP] SNAP [SEP] B-Version [SEP] version 3 . 2 ."
14,32,B-Version [SEP] version 3 . 2 .,B-Application [SEP] and,106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Version [SEP] version 3 . 2 . [SEP] B-Application [SEP] and","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] and [SEP] B-Version [SEP] version 3 . 2 ."
14,26,B-Version [SEP] version 3 . 2 .,B-Version [SEP] version 4 .,106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Version [SEP] version 3 . 2 . [SEP] B-Version [SEP] version 4 .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Version [SEP] version 4 . [SEP] B-Version [SEP] version 3 . 2 ."
14,7,B-Version [SEP] version 3 . 2 .,B-Application [SEP] with,106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Version [SEP] version 3 . 2 . [SEP] B-Application [SEP] with","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] with [SEP] B-Version [SEP] version 3 . 2 ."
14,11,B-Version [SEP] version 3 . 2 .,"B-URL [SEP] ,",106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Version [SEP] version 3 . 2 . [SEP] B-URL [SEP] ,","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-URL [SEP] , [SEP] B-Version [SEP] version 3 . 2 ."
14,21,B-Version [SEP] version 3 . 2 .,"B-Application [SEP] , GeneMark -",106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Version [SEP] version 3 . 2 . [SEP] B-Application [SEP] , GeneMark -","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] , GeneMark - [SEP] B-Version [SEP] version 3 . 2 ."
11,9,"B-URL [SEP] ,",B-Application [SEP] (,106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-URL [SEP] , [SEP] B-Application [SEP] (","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] ( [SEP] B-URL [SEP] ,"
11,33,"B-URL [SEP] ,",B-Version [SEP] SNAP,106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-URL [SEP] , [SEP] B-Version [SEP] SNAP","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Version [SEP] SNAP [SEP] B-URL [SEP] ,"
11,32,"B-URL [SEP] ,",B-Application [SEP] and,106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-URL [SEP] , [SEP] B-Application [SEP] and","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] and [SEP] B-URL [SEP] ,"
11,26,"B-URL [SEP] ,",B-Version [SEP] version 4 .,106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-URL [SEP] , [SEP] B-Version [SEP] version 4 .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Version [SEP] version 4 . [SEP] B-URL [SEP] ,"
11,7,"B-URL [SEP] ,",B-Application [SEP] with,106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-URL [SEP] , [SEP] B-Application [SEP] with","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] with [SEP] B-URL [SEP] ,"
11,14,"B-URL [SEP] ,",B-Version [SEP] version 3 . 2 .,106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-URL [SEP] , [SEP] B-Version [SEP] version 3 . 2 .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Version [SEP] version 3 . 2 . [SEP] B-URL [SEP] ,"
11,21,"B-URL [SEP] ,","B-Application [SEP] , GeneMark -",106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-URL [SEP] , [SEP] B-Application [SEP] , GeneMark -","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] , GeneMark - [SEP] B-URL [SEP] ,"
21,9,"B-Application [SEP] , GeneMark -",B-Application [SEP] (,106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] , GeneMark - [SEP] B-Application [SEP] (","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] ( [SEP] B-Application [SEP] , GeneMark -"
21,33,"B-Application [SEP] , GeneMark -",B-Version [SEP] SNAP,106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] , GeneMark - [SEP] B-Version [SEP] SNAP","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Version [SEP] SNAP [SEP] B-Application [SEP] , GeneMark -"
21,32,"B-Application [SEP] , GeneMark -",B-Application [SEP] and,106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] , GeneMark - [SEP] B-Application [SEP] and","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] and [SEP] B-Application [SEP] , GeneMark -"
21,26,"B-Application [SEP] , GeneMark -",B-Version [SEP] version 4 .,106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] , GeneMark - [SEP] B-Version [SEP] version 4 .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Version [SEP] version 4 . [SEP] B-Application [SEP] , GeneMark -"
21,7,"B-Application [SEP] , GeneMark -",B-Application [SEP] with,106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] , GeneMark - [SEP] B-Application [SEP] with","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] with [SEP] B-Application [SEP] , GeneMark -"
21,14,"B-Application [SEP] , GeneMark -",B-Version [SEP] version 3 . 2 .,106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] , GeneMark - [SEP] B-Version [SEP] version 3 . 2 .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Version [SEP] version 3 . 2 . [SEP] B-Application [SEP] , GeneMark -"
21,11,"B-Application [SEP] , GeneMark -","B-URL [SEP] ,",106,"The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes .","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-Application [SEP] , GeneMark - [SEP] B-URL [SEP] ,","The ab initio gene prediction was conducted with Augustus ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ; version 3 . 2 . 2 ) , GeneMark - ET ( version 4 . 29 ) , and SNAP 15 to predict coding genes . [SEP] B-URL [SEP] , [SEP] B-Application [SEP] , GeneMark -"
9,2,B-Version [SEP] 2 . 47 . 3,B-Application [SEP] Exonerate,107,"Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments .","Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments . [SEP] B-Version [SEP] 2 . 47 . 3 [SEP] B-Application [SEP] Exonerate","Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments . [SEP] B-Application [SEP] Exonerate [SEP] B-Version [SEP] 2 . 47 . 3"
9,4,B-Version [SEP] 2 . 47 . 3,B-Application [SEP] Exonerate,107,"Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments .","Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments . [SEP] B-Version [SEP] 2 . 47 . 3 [SEP] B-Application [SEP] Exonerate","Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments . [SEP] B-Application [SEP] Exonerate [SEP] B-Version [SEP] 2 . 47 . 3"
9,6,B-Version [SEP] 2 . 47 . 3,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_016088,107,"Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments .","Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments . [SEP] B-Version [SEP] 2 . 47 . 3 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_016088","Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_016088 [SEP] B-Version [SEP] 2 . 47 . 3"
9,15,B-Version [SEP] 2 . 47 . 3,B-Citation [SEP] [ 27 ],107,"Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments .","Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments . [SEP] B-Version [SEP] 2 . 47 . 3 [SEP] B-Citation [SEP] [ 27 ]","Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments . [SEP] B-Citation [SEP] [ 27 ] [SEP] B-Version [SEP] 2 . 47 . 3"
2,9,B-Application [SEP] Exonerate,B-Version [SEP] 2 . 47 . 3,107,"Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments .","Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments . [SEP] B-Application [SEP] Exonerate [SEP] B-Version [SEP] 2 . 47 . 3","Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments . [SEP] B-Version [SEP] 2 . 47 . 3 [SEP] B-Application [SEP] Exonerate"
2,6,B-Application [SEP] Exonerate,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_016088,107,"Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments .","Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments . [SEP] B-Application [SEP] Exonerate [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_016088","Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_016088 [SEP] B-Application [SEP] Exonerate"
2,15,B-Application [SEP] Exonerate,B-Citation [SEP] [ 27 ],107,"Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments .","Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments . [SEP] B-Application [SEP] Exonerate [SEP] B-Citation [SEP] [ 27 ]","Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments . [SEP] B-Citation [SEP] [ 27 ] [SEP] B-Application [SEP] Exonerate"
4,9,B-Application [SEP] Exonerate,B-Version [SEP] 2 . 47 . 3,107,"Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments .","Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments . [SEP] B-Application [SEP] Exonerate [SEP] B-Version [SEP] 2 . 47 . 3","Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments . [SEP] B-Version [SEP] 2 . 47 . 3 [SEP] B-Application [SEP] Exonerate"
4,6,B-Application [SEP] Exonerate,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_016088,107,"Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments .","Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments . [SEP] B-Application [SEP] Exonerate [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_016088","Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_016088 [SEP] B-Application [SEP] Exonerate"
4,15,B-Application [SEP] Exonerate,B-Citation [SEP] [ 27 ],107,"Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments .","Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments . [SEP] B-Application [SEP] Exonerate [SEP] B-Citation [SEP] [ 27 ]","Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments . [SEP] B-Citation [SEP] [ 27 ] [SEP] B-Application [SEP] Exonerate"
6,9,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_016088,B-Version [SEP] 2 . 47 . 3,107,"Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments .","Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_016088 [SEP] B-Version [SEP] 2 . 47 . 3","Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments . [SEP] B-Version [SEP] 2 . 47 . 3 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_016088"
6,2,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_016088,B-Application [SEP] Exonerate,107,"Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments .","Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_016088 [SEP] B-Application [SEP] Exonerate","Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments . [SEP] B-Application [SEP] Exonerate [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_016088"
6,4,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_016088,B-Application [SEP] Exonerate,107,"Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments .","Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_016088 [SEP] B-Application [SEP] Exonerate","Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments . [SEP] B-Application [SEP] Exonerate [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_016088"
6,15,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_016088,B-Citation [SEP] [ 27 ],107,"Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments .","Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_016088 [SEP] B-Citation [SEP] [ 27 ]","Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments . [SEP] B-Citation [SEP] [ 27 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_016088"
15,9,B-Citation [SEP] [ 27 ],B-Version [SEP] 2 . 47 . 3,107,"Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments .","Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments . [SEP] B-Citation [SEP] [ 27 ] [SEP] B-Version [SEP] 2 . 47 . 3","Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments . [SEP] B-Version [SEP] 2 . 47 . 3 [SEP] B-Citation [SEP] [ 27 ]"
15,2,B-Citation [SEP] [ 27 ],B-Application [SEP] Exonerate,107,"Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments .","Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments . [SEP] B-Citation [SEP] [ 27 ] [SEP] B-Application [SEP] Exonerate","Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments . [SEP] B-Application [SEP] Exonerate [SEP] B-Citation [SEP] [ 27 ]"
15,4,B-Citation [SEP] [ 27 ],B-Application [SEP] Exonerate,107,"Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments .","Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments . [SEP] B-Citation [SEP] [ 27 ] [SEP] B-Application [SEP] Exonerate","Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments . [SEP] B-Application [SEP] Exonerate [SEP] B-Citation [SEP] [ 27 ]"
15,6,B-Citation [SEP] [ 27 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_016088,107,"Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments .","Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments . [SEP] B-Citation [SEP] [ 27 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_016088","Then , Exonerate ( Exonerate , https://scicrunch.org/resolver/RRID:SCR_016088 ; version 2 . 47 . 3 ) [ 27 ] was used to generate gene structures based on the homology alignments . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_016088 [SEP] B-Citation [SEP] [ 27 ]"
56,53,B-Version [SEP] 2 . 1 . 1,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013035,108,"For the transcriptome - based prediction , transcriptome data were generated from mixed samples of flowers , buds , leaves , nuts , and roots on the Illumina HiSeq 2500 platform ( a total of 20 . 84 Gb raw data ) and mapped to the genome assembly using TopHat ( TopHat , https://scicrunch.org/resolver/RRID:SCR_013035 ; version 2 . 1 . 1 ) .","For the transcriptome - based prediction , transcriptome data were generated from mixed samples of flowers , buds , leaves , nuts , and roots on the Illumina HiSeq 2500 platform ( a total of 20 . 84 Gb raw data ) and mapped to the genome assembly using TopHat ( TopHat , https://scicrunch.org/resolver/RRID:SCR_013035 ; version 2 . 1 . 1 ) . [SEP] B-Version [SEP] 2 . 1 . 1 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013035","For the transcriptome - based prediction , transcriptome data were generated from mixed samples of flowers , buds , leaves , nuts , and roots on the Illumina HiSeq 2500 platform ( a total of 20 . 84 Gb raw data ) and mapped to the genome assembly using TopHat ( TopHat , https://scicrunch.org/resolver/RRID:SCR_013035 ; version 2 . 1 . 1 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013035 [SEP] B-Version [SEP] 2 . 1 . 1"
56,49,B-Version [SEP] 2 . 1 . 1,B-Application [SEP] TopHat,108,"For the transcriptome - based prediction , transcriptome data were generated from mixed samples of flowers , buds , leaves , nuts , and roots on the Illumina HiSeq 2500 platform ( a total of 20 . 84 Gb raw data ) and mapped to the genome assembly using TopHat ( TopHat , https://scicrunch.org/resolver/RRID:SCR_013035 ; version 2 . 1 . 1 ) .","For the transcriptome - based prediction , transcriptome data were generated from mixed samples of flowers , buds , leaves , nuts , and roots on the Illumina HiSeq 2500 platform ( a total of 20 . 84 Gb raw data ) and mapped to the genome assembly using TopHat ( TopHat , https://scicrunch.org/resolver/RRID:SCR_013035 ; version 2 . 1 . 1 ) . [SEP] B-Version [SEP] 2 . 1 . 1 [SEP] B-Application [SEP] TopHat","For the transcriptome - based prediction , transcriptome data were generated from mixed samples of flowers , buds , leaves , nuts , and roots on the Illumina HiSeq 2500 platform ( a total of 20 . 84 Gb raw data ) and mapped to the genome assembly using TopHat ( TopHat , https://scicrunch.org/resolver/RRID:SCR_013035 ; version 2 . 1 . 1 ) . [SEP] B-Application [SEP] TopHat [SEP] B-Version [SEP] 2 . 1 . 1"
56,51,B-Version [SEP] 2 . 1 . 1,B-Application [SEP] TopHat,108,"For the transcriptome - based prediction , transcriptome data were generated from mixed samples of flowers , buds , leaves , nuts , and roots on the Illumina HiSeq 2500 platform ( a total of 20 . 84 Gb raw data ) and mapped to the genome assembly using TopHat ( TopHat , https://scicrunch.org/resolver/RRID:SCR_013035 ; version 2 . 1 . 1 ) .","For the transcriptome - based prediction , transcriptome data were generated from mixed samples of flowers , buds , leaves , nuts , and roots on the Illumina HiSeq 2500 platform ( a total of 20 . 84 Gb raw data ) and mapped to the genome assembly using TopHat ( TopHat , https://scicrunch.org/resolver/RRID:SCR_013035 ; version 2 . 1 . 1 ) . [SEP] B-Version [SEP] 2 . 1 . 1 [SEP] B-Application [SEP] TopHat","For the transcriptome - based prediction , transcriptome data were generated from mixed samples of flowers , buds , leaves , nuts , and roots on the Illumina HiSeq 2500 platform ( a total of 20 . 84 Gb raw data ) and mapped to the genome assembly using TopHat ( TopHat , https://scicrunch.org/resolver/RRID:SCR_013035 ; version 2 . 1 . 1 ) . [SEP] B-Application [SEP] TopHat [SEP] B-Version [SEP] 2 . 1 . 1"
53,56,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013035,B-Version [SEP] 2 . 1 . 1,108,"For the transcriptome - based prediction , transcriptome data were generated from mixed samples of flowers , buds , leaves , nuts , and roots on the Illumina HiSeq 2500 platform ( a total of 20 . 84 Gb raw data ) and mapped to the genome assembly using TopHat ( TopHat , https://scicrunch.org/resolver/RRID:SCR_013035 ; version 2 . 1 . 1 ) .","For the transcriptome - based prediction , transcriptome data were generated from mixed samples of flowers , buds , leaves , nuts , and roots on the Illumina HiSeq 2500 platform ( a total of 20 . 84 Gb raw data ) and mapped to the genome assembly using TopHat ( TopHat , https://scicrunch.org/resolver/RRID:SCR_013035 ; version 2 . 1 . 1 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013035 [SEP] B-Version [SEP] 2 . 1 . 1","For the transcriptome - based prediction , transcriptome data were generated from mixed samples of flowers , buds , leaves , nuts , and roots on the Illumina HiSeq 2500 platform ( a total of 20 . 84 Gb raw data ) and mapped to the genome assembly using TopHat ( TopHat , https://scicrunch.org/resolver/RRID:SCR_013035 ; version 2 . 1 . 1 ) . [SEP] B-Version [SEP] 2 . 1 . 1 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013035"
53,49,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013035,B-Application [SEP] TopHat,108,"For the transcriptome - based prediction , transcriptome data were generated from mixed samples of flowers , buds , leaves , nuts , and roots on the Illumina HiSeq 2500 platform ( a total of 20 . 84 Gb raw data ) and mapped to the genome assembly using TopHat ( TopHat , https://scicrunch.org/resolver/RRID:SCR_013035 ; version 2 . 1 . 1 ) .","For the transcriptome - based prediction , transcriptome data were generated from mixed samples of flowers , buds , leaves , nuts , and roots on the Illumina HiSeq 2500 platform ( a total of 20 . 84 Gb raw data ) and mapped to the genome assembly using TopHat ( TopHat , https://scicrunch.org/resolver/RRID:SCR_013035 ; version 2 . 1 . 1 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013035 [SEP] B-Application [SEP] TopHat","For the transcriptome - based prediction , transcriptome data were generated from mixed samples of flowers , buds , leaves , nuts , and roots on the Illumina HiSeq 2500 platform ( a total of 20 . 84 Gb raw data ) and mapped to the genome assembly using TopHat ( TopHat , https://scicrunch.org/resolver/RRID:SCR_013035 ; version 2 . 1 . 1 ) . [SEP] B-Application [SEP] TopHat [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013035"
53,51,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013035,B-Application [SEP] TopHat,108,"For the transcriptome - based prediction , transcriptome data were generated from mixed samples of flowers , buds , leaves , nuts , and roots on the Illumina HiSeq 2500 platform ( a total of 20 . 84 Gb raw data ) and mapped to the genome assembly using TopHat ( TopHat , https://scicrunch.org/resolver/RRID:SCR_013035 ; version 2 . 1 . 1 ) .","For the transcriptome - based prediction , transcriptome data were generated from mixed samples of flowers , buds , leaves , nuts , and roots on the Illumina HiSeq 2500 platform ( a total of 20 . 84 Gb raw data ) and mapped to the genome assembly using TopHat ( TopHat , https://scicrunch.org/resolver/RRID:SCR_013035 ; version 2 . 1 . 1 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013035 [SEP] B-Application [SEP] TopHat","For the transcriptome - based prediction , transcriptome data were generated from mixed samples of flowers , buds , leaves , nuts , and roots on the Illumina HiSeq 2500 platform ( a total of 20 . 84 Gb raw data ) and mapped to the genome assembly using TopHat ( TopHat , https://scicrunch.org/resolver/RRID:SCR_013035 ; version 2 . 1 . 1 ) . [SEP] B-Application [SEP] TopHat [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013035"
49,56,B-Application [SEP] TopHat,B-Version [SEP] 2 . 1 . 1,108,"For the transcriptome - based prediction , transcriptome data were generated from mixed samples of flowers , buds , leaves , nuts , and roots on the Illumina HiSeq 2500 platform ( a total of 20 . 84 Gb raw data ) and mapped to the genome assembly using TopHat ( TopHat , https://scicrunch.org/resolver/RRID:SCR_013035 ; version 2 . 1 . 1 ) .","For the transcriptome - based prediction , transcriptome data were generated from mixed samples of flowers , buds , leaves , nuts , and roots on the Illumina HiSeq 2500 platform ( a total of 20 . 84 Gb raw data ) and mapped to the genome assembly using TopHat ( TopHat , https://scicrunch.org/resolver/RRID:SCR_013035 ; version 2 . 1 . 1 ) . [SEP] B-Application [SEP] TopHat [SEP] B-Version [SEP] 2 . 1 . 1","For the transcriptome - based prediction , transcriptome data were generated from mixed samples of flowers , buds , leaves , nuts , and roots on the Illumina HiSeq 2500 platform ( a total of 20 . 84 Gb raw data ) and mapped to the genome assembly using TopHat ( TopHat , https://scicrunch.org/resolver/RRID:SCR_013035 ; version 2 . 1 . 1 ) . [SEP] B-Version [SEP] 2 . 1 . 1 [SEP] B-Application [SEP] TopHat"
49,53,B-Application [SEP] TopHat,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013035,108,"For the transcriptome - based prediction , transcriptome data were generated from mixed samples of flowers , buds , leaves , nuts , and roots on the Illumina HiSeq 2500 platform ( a total of 20 . 84 Gb raw data ) and mapped to the genome assembly using TopHat ( TopHat , https://scicrunch.org/resolver/RRID:SCR_013035 ; version 2 . 1 . 1 ) .","For the transcriptome - based prediction , transcriptome data were generated from mixed samples of flowers , buds , leaves , nuts , and roots on the Illumina HiSeq 2500 platform ( a total of 20 . 84 Gb raw data ) and mapped to the genome assembly using TopHat ( TopHat , https://scicrunch.org/resolver/RRID:SCR_013035 ; version 2 . 1 . 1 ) . [SEP] B-Application [SEP] TopHat [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013035","For the transcriptome - based prediction , transcriptome data were generated from mixed samples of flowers , buds , leaves , nuts , and roots on the Illumina HiSeq 2500 platform ( a total of 20 . 84 Gb raw data ) and mapped to the genome assembly using TopHat ( TopHat , https://scicrunch.org/resolver/RRID:SCR_013035 ; version 2 . 1 . 1 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013035 [SEP] B-Application [SEP] TopHat"
51,56,B-Application [SEP] TopHat,B-Version [SEP] 2 . 1 . 1,108,"For the transcriptome - based prediction , transcriptome data were generated from mixed samples of flowers , buds , leaves , nuts , and roots on the Illumina HiSeq 2500 platform ( a total of 20 . 84 Gb raw data ) and mapped to the genome assembly using TopHat ( TopHat , https://scicrunch.org/resolver/RRID:SCR_013035 ; version 2 . 1 . 1 ) .","For the transcriptome - based prediction , transcriptome data were generated from mixed samples of flowers , buds , leaves , nuts , and roots on the Illumina HiSeq 2500 platform ( a total of 20 . 84 Gb raw data ) and mapped to the genome assembly using TopHat ( TopHat , https://scicrunch.org/resolver/RRID:SCR_013035 ; version 2 . 1 . 1 ) . [SEP] B-Application [SEP] TopHat [SEP] B-Version [SEP] 2 . 1 . 1","For the transcriptome - based prediction , transcriptome data were generated from mixed samples of flowers , buds , leaves , nuts , and roots on the Illumina HiSeq 2500 platform ( a total of 20 . 84 Gb raw data ) and mapped to the genome assembly using TopHat ( TopHat , https://scicrunch.org/resolver/RRID:SCR_013035 ; version 2 . 1 . 1 ) . [SEP] B-Version [SEP] 2 . 1 . 1 [SEP] B-Application [SEP] TopHat"
51,53,B-Application [SEP] TopHat,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013035,108,"For the transcriptome - based prediction , transcriptome data were generated from mixed samples of flowers , buds , leaves , nuts , and roots on the Illumina HiSeq 2500 platform ( a total of 20 . 84 Gb raw data ) and mapped to the genome assembly using TopHat ( TopHat , https://scicrunch.org/resolver/RRID:SCR_013035 ; version 2 . 1 . 1 ) .","For the transcriptome - based prediction , transcriptome data were generated from mixed samples of flowers , buds , leaves , nuts , and roots on the Illumina HiSeq 2500 platform ( a total of 20 . 84 Gb raw data ) and mapped to the genome assembly using TopHat ( TopHat , https://scicrunch.org/resolver/RRID:SCR_013035 ; version 2 . 1 . 1 ) . [SEP] B-Application [SEP] TopHat [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013035","For the transcriptome - based prediction , transcriptome data were generated from mixed samples of flowers , buds , leaves , nuts , and roots on the Illumina HiSeq 2500 platform ( a total of 20 . 84 Gb raw data ) and mapped to the genome assembly using TopHat ( TopHat , https://scicrunch.org/resolver/RRID:SCR_013035 ; version 2 . 1 . 1 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_013035 [SEP] B-Application [SEP] TopHat"
0,4,B-Application [SEP] Cufflinks,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014597,109,"Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models .","Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models . [SEP] B-Application [SEP] Cufflinks [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014597","Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014597 [SEP] B-Application [SEP] Cufflinks"
0,7,B-Application [SEP] Cufflinks,B-Version [SEP] 2 . 1 . 1,109,"Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models .","Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models . [SEP] B-Application [SEP] Cufflinks [SEP] B-Version [SEP] 2 . 1 . 1","Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models . [SEP] B-Version [SEP] 2 . 1 . 1 [SEP] B-Application [SEP] Cufflinks"
0,13,B-Application [SEP] Cufflinks,B-Citation [SEP] [ 28 ],109,"Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models .","Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models . [SEP] B-Application [SEP] Cufflinks [SEP] B-Citation [SEP] [ 28 ]","Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models . [SEP] B-Citation [SEP] [ 28 ] [SEP] B-Application [SEP] Cufflinks"
2,4,B-Application [SEP] Cufflinks,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014597,109,"Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models .","Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models . [SEP] B-Application [SEP] Cufflinks [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014597","Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014597 [SEP] B-Application [SEP] Cufflinks"
2,7,B-Application [SEP] Cufflinks,B-Version [SEP] 2 . 1 . 1,109,"Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models .","Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models . [SEP] B-Application [SEP] Cufflinks [SEP] B-Version [SEP] 2 . 1 . 1","Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models . [SEP] B-Version [SEP] 2 . 1 . 1 [SEP] B-Application [SEP] Cufflinks"
2,13,B-Application [SEP] Cufflinks,B-Citation [SEP] [ 28 ],109,"Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models .","Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models . [SEP] B-Application [SEP] Cufflinks [SEP] B-Citation [SEP] [ 28 ]","Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models . [SEP] B-Citation [SEP] [ 28 ] [SEP] B-Application [SEP] Cufflinks"
4,0,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014597,B-Application [SEP] Cufflinks,109,"Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models .","Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014597 [SEP] B-Application [SEP] Cufflinks","Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models . [SEP] B-Application [SEP] Cufflinks [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014597"
4,2,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014597,B-Application [SEP] Cufflinks,109,"Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models .","Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014597 [SEP] B-Application [SEP] Cufflinks","Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models . [SEP] B-Application [SEP] Cufflinks [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014597"
4,7,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014597,B-Version [SEP] 2 . 1 . 1,109,"Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models .","Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014597 [SEP] B-Version [SEP] 2 . 1 . 1","Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models . [SEP] B-Version [SEP] 2 . 1 . 1 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014597"
4,13,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014597,B-Citation [SEP] [ 28 ],109,"Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models .","Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014597 [SEP] B-Citation [SEP] [ 28 ]","Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models . [SEP] B-Citation [SEP] [ 28 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014597"
7,0,B-Version [SEP] 2 . 1 . 1,B-Application [SEP] Cufflinks,109,"Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models .","Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models . [SEP] B-Version [SEP] 2 . 1 . 1 [SEP] B-Application [SEP] Cufflinks","Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models . [SEP] B-Application [SEP] Cufflinks [SEP] B-Version [SEP] 2 . 1 . 1"
7,2,B-Version [SEP] 2 . 1 . 1,B-Application [SEP] Cufflinks,109,"Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models .","Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models . [SEP] B-Version [SEP] 2 . 1 . 1 [SEP] B-Application [SEP] Cufflinks","Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models . [SEP] B-Application [SEP] Cufflinks [SEP] B-Version [SEP] 2 . 1 . 1"
7,4,B-Version [SEP] 2 . 1 . 1,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014597,109,"Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models .","Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models . [SEP] B-Version [SEP] 2 . 1 . 1 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014597","Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014597 [SEP] B-Version [SEP] 2 . 1 . 1"
7,13,B-Version [SEP] 2 . 1 . 1,B-Citation [SEP] [ 28 ],109,"Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models .","Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models . [SEP] B-Version [SEP] 2 . 1 . 1 [SEP] B-Citation [SEP] [ 28 ]","Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models . [SEP] B-Citation [SEP] [ 28 ] [SEP] B-Version [SEP] 2 . 1 . 1"
13,0,B-Citation [SEP] [ 28 ],B-Application [SEP] Cufflinks,109,"Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models .","Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models . [SEP] B-Citation [SEP] [ 28 ] [SEP] B-Application [SEP] Cufflinks","Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models . [SEP] B-Application [SEP] Cufflinks [SEP] B-Citation [SEP] [ 28 ]"
13,2,B-Citation [SEP] [ 28 ],B-Application [SEP] Cufflinks,109,"Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models .","Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models . [SEP] B-Citation [SEP] [ 28 ] [SEP] B-Application [SEP] Cufflinks","Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models . [SEP] B-Application [SEP] Cufflinks [SEP] B-Citation [SEP] [ 28 ]"
13,4,B-Citation [SEP] [ 28 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014597,109,"Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models .","Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models . [SEP] B-Citation [SEP] [ 28 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014597","Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_014597 [SEP] B-Citation [SEP] [ 28 ]"
13,7,B-Citation [SEP] [ 28 ],B-Version [SEP] 2 . 1 . 1,109,"Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models .","Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models . [SEP] B-Citation [SEP] [ 28 ] [SEP] B-Version [SEP] 2 . 1 . 1","Cufflinks ( Cufflinks , https://scicrunch.org/resolver/RRID:SCR_014597 ; version 2 . 1 . 1 ) [ 28 ] was then used to identify spliced transcripts in the gene models . [SEP] B-Version [SEP] 2 . 1 . 1 [SEP] B-Citation [SEP] [ 28 ]"
13,15,B-Application [SEP] EVidenceModeler,B-Application [SEP] EVM,110,All the gene evidence predicted by the aforementioned 3 approaches was integrated by EVidenceModeler ( EVM version 1 . 1 . 1 ) .,All the gene evidence predicted by the aforementioned 3 approaches was integrated by EVidenceModeler ( EVM version 1 . 1 . 1 ) . [SEP] B-Application [SEP] EVidenceModeler [SEP] B-Application [SEP] EVM,All the gene evidence predicted by the aforementioned 3 approaches was integrated by EVidenceModeler ( EVM version 1 . 1 . 1 ) . [SEP] B-Application [SEP] EVM [SEP] B-Application [SEP] EVidenceModeler
13,17,B-Application [SEP] EVidenceModeler,B-Version [SEP] 1 . 1 . 1,110,All the gene evidence predicted by the aforementioned 3 approaches was integrated by EVidenceModeler ( EVM version 1 . 1 . 1 ) .,All the gene evidence predicted by the aforementioned 3 approaches was integrated by EVidenceModeler ( EVM version 1 . 1 . 1 ) . [SEP] B-Application [SEP] EVidenceModeler [SEP] B-Version [SEP] 1 . 1 . 1,All the gene evidence predicted by the aforementioned 3 approaches was integrated by EVidenceModeler ( EVM version 1 . 1 . 1 ) . [SEP] B-Version [SEP] 1 . 1 . 1 [SEP] B-Application [SEP] EVidenceModeler
15,13,B-Application [SEP] EVM,B-Application [SEP] EVidenceModeler,110,All the gene evidence predicted by the aforementioned 3 approaches was integrated by EVidenceModeler ( EVM version 1 . 1 . 1 ) .,All the gene evidence predicted by the aforementioned 3 approaches was integrated by EVidenceModeler ( EVM version 1 . 1 . 1 ) . [SEP] B-Application [SEP] EVM [SEP] B-Application [SEP] EVidenceModeler,All the gene evidence predicted by the aforementioned 3 approaches was integrated by EVidenceModeler ( EVM version 1 . 1 . 1 ) . [SEP] B-Application [SEP] EVidenceModeler [SEP] B-Application [SEP] EVM
15,17,B-Application [SEP] EVM,B-Version [SEP] 1 . 1 . 1,110,All the gene evidence predicted by the aforementioned 3 approaches was integrated by EVidenceModeler ( EVM version 1 . 1 . 1 ) .,All the gene evidence predicted by the aforementioned 3 approaches was integrated by EVidenceModeler ( EVM version 1 . 1 . 1 ) . [SEP] B-Application [SEP] EVM [SEP] B-Version [SEP] 1 . 1 . 1,All the gene evidence predicted by the aforementioned 3 approaches was integrated by EVidenceModeler ( EVM version 1 . 1 . 1 ) . [SEP] B-Version [SEP] 1 . 1 . 1 [SEP] B-Application [SEP] EVM
17,13,B-Version [SEP] 1 . 1 . 1,B-Application [SEP] EVidenceModeler,110,All the gene evidence predicted by the aforementioned 3 approaches was integrated by EVidenceModeler ( EVM version 1 . 1 . 1 ) .,All the gene evidence predicted by the aforementioned 3 approaches was integrated by EVidenceModeler ( EVM version 1 . 1 . 1 ) . [SEP] B-Version [SEP] 1 . 1 . 1 [SEP] B-Application [SEP] EVidenceModeler,All the gene evidence predicted by the aforementioned 3 approaches was integrated by EVidenceModeler ( EVM version 1 . 1 . 1 ) . [SEP] B-Application [SEP] EVidenceModeler [SEP] B-Version [SEP] 1 . 1 . 1
17,15,B-Version [SEP] 1 . 1 . 1,B-Application [SEP] EVM,110,All the gene evidence predicted by the aforementioned 3 approaches was integrated by EVidenceModeler ( EVM version 1 . 1 . 1 ) .,All the gene evidence predicted by the aforementioned 3 approaches was integrated by EVidenceModeler ( EVM version 1 . 1 . 1 ) . [SEP] B-Version [SEP] 1 . 1 . 1 [SEP] B-Application [SEP] EVM,All the gene evidence predicted by the aforementioned 3 approaches was integrated by EVidenceModeler ( EVM version 1 . 1 . 1 ) . [SEP] B-Application [SEP] EVM [SEP] B-Version [SEP] 1 . 1 . 1
12,10,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_001010,B-Application [SEP] BLASTP,111,"The obtained gene set was functionally analyzed using BLASTP ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) with an E - value of 1e against the NCBI - NR , Swiss - Prot , and euKaryotic Orthologous Groups ( KOG ) databases .","The obtained gene set was functionally analyzed using BLASTP ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) with an E - value of 1e against the NCBI - NR , Swiss - Prot , and euKaryotic Orthologous Groups ( KOG ) databases . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_001010 [SEP] B-Application [SEP] BLASTP","The obtained gene set was functionally analyzed using BLASTP ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) with an E - value of 1e against the NCBI - NR , Swiss - Prot , and euKaryotic Orthologous Groups ( KOG ) databases . [SEP] B-Application [SEP] BLASTP [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_001010"
12,8,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_001010,B-Application [SEP] BLASTP,111,"The obtained gene set was functionally analyzed using BLASTP ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) with an E - value of 1e against the NCBI - NR , Swiss - Prot , and euKaryotic Orthologous Groups ( KOG ) databases .","The obtained gene set was functionally analyzed using BLASTP ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) with an E - value of 1e against the NCBI - NR , Swiss - Prot , and euKaryotic Orthologous Groups ( KOG ) databases . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_001010 [SEP] B-Application [SEP] BLASTP","The obtained gene set was functionally analyzed using BLASTP ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) with an E - value of 1e against the NCBI - NR , Swiss - Prot , and euKaryotic Orthologous Groups ( KOG ) databases . [SEP] B-Application [SEP] BLASTP [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_001010"
10,12,B-Application [SEP] BLASTP,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_001010,111,"The obtained gene set was functionally analyzed using BLASTP ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) with an E - value of 1e against the NCBI - NR , Swiss - Prot , and euKaryotic Orthologous Groups ( KOG ) databases .","The obtained gene set was functionally analyzed using BLASTP ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) with an E - value of 1e against the NCBI - NR , Swiss - Prot , and euKaryotic Orthologous Groups ( KOG ) databases . [SEP] B-Application [SEP] BLASTP [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_001010","The obtained gene set was functionally analyzed using BLASTP ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) with an E - value of 1e against the NCBI - NR , Swiss - Prot , and euKaryotic Orthologous Groups ( KOG ) databases . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_001010 [SEP] B-Application [SEP] BLASTP"
8,12,B-Application [SEP] BLASTP,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_001010,111,"The obtained gene set was functionally analyzed using BLASTP ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) with an E - value of 1e against the NCBI - NR , Swiss - Prot , and euKaryotic Orthologous Groups ( KOG ) databases .","The obtained gene set was functionally analyzed using BLASTP ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) with an E - value of 1e against the NCBI - NR , Swiss - Prot , and euKaryotic Orthologous Groups ( KOG ) databases . [SEP] B-Application [SEP] BLASTP [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_001010","The obtained gene set was functionally analyzed using BLASTP ( BLASTP , https://scicrunch.org/resolver/RRID:SCR_001010 ) with an E - value of 1e against the NCBI - NR , Swiss - Prot , and euKaryotic Orthologous Groups ( KOG ) databases . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_001010 [SEP] B-Application [SEP] BLASTP"
9,14,B-Application [SEP] InterPro,B-Application [SEP] InterProScan,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] InterPro [SEP] B-Application [SEP] InterProScan","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] InterProScan [SEP] B-Application [SEP] InterPro"
9,16,B-Application [SEP] InterPro,B-Application [SEP] InterProScan,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] InterPro [SEP] B-Application [SEP] InterProScan","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] InterProScan [SEP] B-Application [SEP] InterPro"
9,18,B-Application [SEP] InterPro,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] InterPro [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829 [SEP] B-Application [SEP] InterPro"
9,20,B-Application [SEP] InterPro,B-Citation [SEP] [ 29 ],112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] InterPro [SEP] B-Citation [SEP] [ 29 ]","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Citation [SEP] [ 29 ] [SEP] B-Application [SEP] InterPro"
9,24,B-Application [SEP] InterPro,B-Application [SEP] HMMER,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] InterPro [SEP] B-Application [SEP] HMMER","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] HMMER [SEP] B-Application [SEP] InterPro"
9,26,B-Application [SEP] InterPro,B-Developer [SEP] Hmmer,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] InterPro [SEP] B-Developer [SEP] Hmmer","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Developer [SEP] Hmmer [SEP] B-Application [SEP] InterPro"
9,28,B-Application [SEP] InterPro,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] InterPro [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305 [SEP] B-Application [SEP] InterPro"
9,30,B-Application [SEP] InterPro,B-Citation [SEP] [ 30 ],112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] InterPro [SEP] B-Citation [SEP] [ 30 ]","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Citation [SEP] [ 30 ] [SEP] B-Application [SEP] InterPro"
14,9,B-Application [SEP] InterProScan,B-Application [SEP] InterPro,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] InterProScan [SEP] B-Application [SEP] InterPro","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] InterPro [SEP] B-Application [SEP] InterProScan"
14,18,B-Application [SEP] InterProScan,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] InterProScan [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829 [SEP] B-Application [SEP] InterProScan"
14,20,B-Application [SEP] InterProScan,B-Citation [SEP] [ 29 ],112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] InterProScan [SEP] B-Citation [SEP] [ 29 ]","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Citation [SEP] [ 29 ] [SEP] B-Application [SEP] InterProScan"
14,24,B-Application [SEP] InterProScan,B-Application [SEP] HMMER,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] InterProScan [SEP] B-Application [SEP] HMMER","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] HMMER [SEP] B-Application [SEP] InterProScan"
14,26,B-Application [SEP] InterProScan,B-Developer [SEP] Hmmer,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] InterProScan [SEP] B-Developer [SEP] Hmmer","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Developer [SEP] Hmmer [SEP] B-Application [SEP] InterProScan"
14,28,B-Application [SEP] InterProScan,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] InterProScan [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305 [SEP] B-Application [SEP] InterProScan"
14,30,B-Application [SEP] InterProScan,B-Citation [SEP] [ 30 ],112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] InterProScan [SEP] B-Citation [SEP] [ 30 ]","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Citation [SEP] [ 30 ] [SEP] B-Application [SEP] InterProScan"
16,9,B-Application [SEP] InterProScan,B-Application [SEP] InterPro,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] InterProScan [SEP] B-Application [SEP] InterPro","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] InterPro [SEP] B-Application [SEP] InterProScan"
16,18,B-Application [SEP] InterProScan,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] InterProScan [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829 [SEP] B-Application [SEP] InterProScan"
16,20,B-Application [SEP] InterProScan,B-Citation [SEP] [ 29 ],112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] InterProScan [SEP] B-Citation [SEP] [ 29 ]","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Citation [SEP] [ 29 ] [SEP] B-Application [SEP] InterProScan"
16,24,B-Application [SEP] InterProScan,B-Application [SEP] HMMER,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] InterProScan [SEP] B-Application [SEP] HMMER","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] HMMER [SEP] B-Application [SEP] InterProScan"
16,26,B-Application [SEP] InterProScan,B-Developer [SEP] Hmmer,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] InterProScan [SEP] B-Developer [SEP] Hmmer","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Developer [SEP] Hmmer [SEP] B-Application [SEP] InterProScan"
16,28,B-Application [SEP] InterProScan,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] InterProScan [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305 [SEP] B-Application [SEP] InterProScan"
16,30,B-Application [SEP] InterProScan,B-Citation [SEP] [ 30 ],112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] InterProScan [SEP] B-Citation [SEP] [ 30 ]","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Citation [SEP] [ 30 ] [SEP] B-Application [SEP] InterProScan"
18,9,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829,B-Application [SEP] InterPro,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829 [SEP] B-Application [SEP] InterPro","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] InterPro [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829"
18,14,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829,B-Application [SEP] InterProScan,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829 [SEP] B-Application [SEP] InterProScan","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] InterProScan [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829"
18,16,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829,B-Application [SEP] InterProScan,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829 [SEP] B-Application [SEP] InterProScan","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] InterProScan [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829"
18,20,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829,B-Citation [SEP] [ 29 ],112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829 [SEP] B-Citation [SEP] [ 29 ]","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Citation [SEP] [ 29 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829"
18,24,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829,B-Application [SEP] HMMER,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829 [SEP] B-Application [SEP] HMMER","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] HMMER [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829"
18,26,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829,B-Developer [SEP] Hmmer,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829 [SEP] B-Developer [SEP] Hmmer","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Developer [SEP] Hmmer [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829"
18,28,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829"
18,30,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829,B-Citation [SEP] [ 30 ],112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829 [SEP] B-Citation [SEP] [ 30 ]","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Citation [SEP] [ 30 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829"
20,9,B-Citation [SEP] [ 29 ],B-Application [SEP] InterPro,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Citation [SEP] [ 29 ] [SEP] B-Application [SEP] InterPro","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] InterPro [SEP] B-Citation [SEP] [ 29 ]"
20,14,B-Citation [SEP] [ 29 ],B-Application [SEP] InterProScan,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Citation [SEP] [ 29 ] [SEP] B-Application [SEP] InterProScan","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] InterProScan [SEP] B-Citation [SEP] [ 29 ]"
20,16,B-Citation [SEP] [ 29 ],B-Application [SEP] InterProScan,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Citation [SEP] [ 29 ] [SEP] B-Application [SEP] InterProScan","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] InterProScan [SEP] B-Citation [SEP] [ 29 ]"
20,18,B-Citation [SEP] [ 29 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Citation [SEP] [ 29 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829 [SEP] B-Citation [SEP] [ 29 ]"
20,24,B-Citation [SEP] [ 29 ],B-Application [SEP] HMMER,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Citation [SEP] [ 29 ] [SEP] B-Application [SEP] HMMER","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] HMMER [SEP] B-Citation [SEP] [ 29 ]"
20,26,B-Citation [SEP] [ 29 ],B-Developer [SEP] Hmmer,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Citation [SEP] [ 29 ] [SEP] B-Developer [SEP] Hmmer","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Developer [SEP] Hmmer [SEP] B-Citation [SEP] [ 29 ]"
20,28,B-Citation [SEP] [ 29 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Citation [SEP] [ 29 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305 [SEP] B-Citation [SEP] [ 29 ]"
20,30,B-Citation [SEP] [ 29 ],B-Citation [SEP] [ 30 ],112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Citation [SEP] [ 29 ] [SEP] B-Citation [SEP] [ 30 ]","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Citation [SEP] [ 30 ] [SEP] B-Citation [SEP] [ 29 ]"
24,9,B-Application [SEP] HMMER,B-Application [SEP] InterPro,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] HMMER [SEP] B-Application [SEP] InterPro","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] InterPro [SEP] B-Application [SEP] HMMER"
24,14,B-Application [SEP] HMMER,B-Application [SEP] InterProScan,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] HMMER [SEP] B-Application [SEP] InterProScan","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] InterProScan [SEP] B-Application [SEP] HMMER"
24,16,B-Application [SEP] HMMER,B-Application [SEP] InterProScan,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] HMMER [SEP] B-Application [SEP] InterProScan","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] InterProScan [SEP] B-Application [SEP] HMMER"
24,18,B-Application [SEP] HMMER,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] HMMER [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829 [SEP] B-Application [SEP] HMMER"
24,20,B-Application [SEP] HMMER,B-Citation [SEP] [ 29 ],112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] HMMER [SEP] B-Citation [SEP] [ 29 ]","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Citation [SEP] [ 29 ] [SEP] B-Application [SEP] HMMER"
24,26,B-Application [SEP] HMMER,B-Developer [SEP] Hmmer,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] HMMER [SEP] B-Developer [SEP] Hmmer","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Developer [SEP] Hmmer [SEP] B-Application [SEP] HMMER"
24,28,B-Application [SEP] HMMER,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] HMMER [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305 [SEP] B-Application [SEP] HMMER"
24,30,B-Application [SEP] HMMER,B-Citation [SEP] [ 30 ],112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] HMMER [SEP] B-Citation [SEP] [ 30 ]","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Citation [SEP] [ 30 ] [SEP] B-Application [SEP] HMMER"
26,9,B-Developer [SEP] Hmmer,B-Application [SEP] InterPro,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Developer [SEP] Hmmer [SEP] B-Application [SEP] InterPro","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] InterPro [SEP] B-Developer [SEP] Hmmer"
26,14,B-Developer [SEP] Hmmer,B-Application [SEP] InterProScan,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Developer [SEP] Hmmer [SEP] B-Application [SEP] InterProScan","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] InterProScan [SEP] B-Developer [SEP] Hmmer"
26,16,B-Developer [SEP] Hmmer,B-Application [SEP] InterProScan,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Developer [SEP] Hmmer [SEP] B-Application [SEP] InterProScan","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] InterProScan [SEP] B-Developer [SEP] Hmmer"
26,18,B-Developer [SEP] Hmmer,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Developer [SEP] Hmmer [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829 [SEP] B-Developer [SEP] Hmmer"
26,20,B-Developer [SEP] Hmmer,B-Citation [SEP] [ 29 ],112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Developer [SEP] Hmmer [SEP] B-Citation [SEP] [ 29 ]","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Citation [SEP] [ 29 ] [SEP] B-Developer [SEP] Hmmer"
26,24,B-Developer [SEP] Hmmer,B-Application [SEP] HMMER,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Developer [SEP] Hmmer [SEP] B-Application [SEP] HMMER","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] HMMER [SEP] B-Developer [SEP] Hmmer"
26,28,B-Developer [SEP] Hmmer,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Developer [SEP] Hmmer [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305 [SEP] B-Developer [SEP] Hmmer"
26,30,B-Developer [SEP] Hmmer,B-Citation [SEP] [ 30 ],112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Developer [SEP] Hmmer [SEP] B-Citation [SEP] [ 30 ]","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Citation [SEP] [ 30 ] [SEP] B-Developer [SEP] Hmmer"
28,9,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305,B-Application [SEP] InterPro,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305 [SEP] B-Application [SEP] InterPro","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] InterPro [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305"
28,14,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305,B-Application [SEP] InterProScan,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305 [SEP] B-Application [SEP] InterProScan","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] InterProScan [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305"
28,16,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305,B-Application [SEP] InterProScan,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305 [SEP] B-Application [SEP] InterProScan","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] InterProScan [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305"
28,18,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305"
28,20,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305,B-Citation [SEP] [ 29 ],112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305 [SEP] B-Citation [SEP] [ 29 ]","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Citation [SEP] [ 29 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305"
28,24,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305,B-Application [SEP] HMMER,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305 [SEP] B-Application [SEP] HMMER","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] HMMER [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305"
28,26,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305,B-Developer [SEP] Hmmer,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305 [SEP] B-Developer [SEP] Hmmer","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Developer [SEP] Hmmer [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305"
28,30,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305,B-Citation [SEP] [ 30 ],112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305 [SEP] B-Citation [SEP] [ 30 ]","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Citation [SEP] [ 30 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305"
30,9,B-Citation [SEP] [ 30 ],B-Application [SEP] InterPro,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Citation [SEP] [ 30 ] [SEP] B-Application [SEP] InterPro","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] InterPro [SEP] B-Citation [SEP] [ 30 ]"
30,14,B-Citation [SEP] [ 30 ],B-Application [SEP] InterProScan,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Citation [SEP] [ 30 ] [SEP] B-Application [SEP] InterProScan","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] InterProScan [SEP] B-Citation [SEP] [ 30 ]"
30,16,B-Citation [SEP] [ 30 ],B-Application [SEP] InterProScan,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Citation [SEP] [ 30 ] [SEP] B-Application [SEP] InterProScan","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] InterProScan [SEP] B-Citation [SEP] [ 30 ]"
30,18,B-Citation [SEP] [ 30 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Citation [SEP] [ 30 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005829 [SEP] B-Citation [SEP] [ 30 ]"
30,20,B-Citation [SEP] [ 30 ],B-Citation [SEP] [ 29 ],112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Citation [SEP] [ 30 ] [SEP] B-Citation [SEP] [ 29 ]","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Citation [SEP] [ 29 ] [SEP] B-Citation [SEP] [ 30 ]"
30,24,B-Citation [SEP] [ 30 ],B-Application [SEP] HMMER,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Citation [SEP] [ 30 ] [SEP] B-Application [SEP] HMMER","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Application [SEP] HMMER [SEP] B-Citation [SEP] [ 30 ]"
30,26,B-Citation [SEP] [ 30 ],B-Developer [SEP] Hmmer,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Citation [SEP] [ 30 ] [SEP] B-Developer [SEP] Hmmer","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Developer [SEP] Hmmer [SEP] B-Citation [SEP] [ 30 ]"
30,28,B-Citation [SEP] [ 30 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305,112,"Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] .","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-Citation [SEP] [ 30 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305","Protein domains were annotated by mapping genes to the InterPro and Pfam databases using InterProScan ( InterProScan , https://scicrunch.org/resolver/RRID:SCR_005829 ) [ 29 ] and HMMER ( Hmmer , https://scicrunch.org/resolver/RRID:SCR_005305 ) [ 30 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005305 [SEP] B-Citation [SEP] [ 30 ]"
34,30,B-Application [SEP] HISAT,B-Citation [SEP] [ 31 ],113,"To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively .","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-Application [SEP] HISAT [SEP] B-Citation [SEP] [ 31 ]","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-Citation [SEP] [ 31 ] [SEP] B-Application [SEP] HISAT"
34,35,B-Application [SEP] HISAT,B-Citation [SEP] [ 32 ],113,"To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively .","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-Application [SEP] HISAT [SEP] B-Citation [SEP] [ 32 ]","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-Citation [SEP] [ 32 ] [SEP] B-Application [SEP] HISAT"
34,26,B-Application [SEP] HISAT,B-Application [SEP] BWA,113,"To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively .","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-Application [SEP] HISAT [SEP] B-Application [SEP] BWA","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-Application [SEP] BWA [SEP] B-Application [SEP] HISAT"
34,24,B-Application [SEP] HISAT,B-Application [SEP] BWA,113,"To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively .","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-Application [SEP] HISAT [SEP] B-Application [SEP] BWA","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-Application [SEP] BWA [SEP] B-Application [SEP] HISAT"
34,28,B-Application [SEP] HISAT,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010910,113,"To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively .","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-Application [SEP] HISAT [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010910","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010910 [SEP] B-Application [SEP] HISAT"
30,34,B-Citation [SEP] [ 31 ],B-Application [SEP] HISAT,113,"To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively .","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-Citation [SEP] [ 31 ] [SEP] B-Application [SEP] HISAT","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-Application [SEP] HISAT [SEP] B-Citation [SEP] [ 31 ]"
30,35,B-Citation [SEP] [ 31 ],B-Citation [SEP] [ 32 ],113,"To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively .","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-Citation [SEP] [ 31 ] [SEP] B-Citation [SEP] [ 32 ]","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-Citation [SEP] [ 32 ] [SEP] B-Citation [SEP] [ 31 ]"
30,26,B-Citation [SEP] [ 31 ],B-Application [SEP] BWA,113,"To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively .","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-Citation [SEP] [ 31 ] [SEP] B-Application [SEP] BWA","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-Application [SEP] BWA [SEP] B-Citation [SEP] [ 31 ]"
30,24,B-Citation [SEP] [ 31 ],B-Application [SEP] BWA,113,"To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively .","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-Citation [SEP] [ 31 ] [SEP] B-Application [SEP] BWA","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-Application [SEP] BWA [SEP] B-Citation [SEP] [ 31 ]"
30,28,B-Citation [SEP] [ 31 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010910,113,"To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively .","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-Citation [SEP] [ 31 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010910","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010910 [SEP] B-Citation [SEP] [ 31 ]"
35,34,B-Citation [SEP] [ 32 ],B-Application [SEP] HISAT,113,"To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively .","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-Citation [SEP] [ 32 ] [SEP] B-Application [SEP] HISAT","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-Application [SEP] HISAT [SEP] B-Citation [SEP] [ 32 ]"
35,30,B-Citation [SEP] [ 32 ],B-Citation [SEP] [ 31 ],113,"To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively .","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-Citation [SEP] [ 32 ] [SEP] B-Citation [SEP] [ 31 ]","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-Citation [SEP] [ 31 ] [SEP] B-Citation [SEP] [ 32 ]"
35,26,B-Citation [SEP] [ 32 ],B-Application [SEP] BWA,113,"To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively .","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-Citation [SEP] [ 32 ] [SEP] B-Application [SEP] BWA","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-Application [SEP] BWA [SEP] B-Citation [SEP] [ 32 ]"
35,24,B-Citation [SEP] [ 32 ],B-Application [SEP] BWA,113,"To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively .","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-Citation [SEP] [ 32 ] [SEP] B-Application [SEP] BWA","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-Application [SEP] BWA [SEP] B-Citation [SEP] [ 32 ]"
35,28,B-Citation [SEP] [ 32 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010910,113,"To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively .","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-Citation [SEP] [ 32 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010910","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010910 [SEP] B-Citation [SEP] [ 32 ]"
26,34,B-Application [SEP] BWA,B-Application [SEP] HISAT,113,"To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively .","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-Application [SEP] BWA [SEP] B-Application [SEP] HISAT","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-Application [SEP] HISAT [SEP] B-Application [SEP] BWA"
26,30,B-Application [SEP] BWA,B-Citation [SEP] [ 31 ],113,"To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively .","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-Application [SEP] BWA [SEP] B-Citation [SEP] [ 31 ]","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-Citation [SEP] [ 31 ] [SEP] B-Application [SEP] BWA"
26,35,B-Application [SEP] BWA,B-Citation [SEP] [ 32 ],113,"To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively .","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-Application [SEP] BWA [SEP] B-Citation [SEP] [ 32 ]","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-Citation [SEP] [ 32 ] [SEP] B-Application [SEP] BWA"
26,28,B-Application [SEP] BWA,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010910,113,"To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively .","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-Application [SEP] BWA [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010910","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010910 [SEP] B-Application [SEP] BWA"
24,34,B-Application [SEP] BWA,B-Application [SEP] HISAT,113,"To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively .","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-Application [SEP] BWA [SEP] B-Application [SEP] HISAT","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-Application [SEP] HISAT [SEP] B-Application [SEP] BWA"
24,30,B-Application [SEP] BWA,B-Citation [SEP] [ 31 ],113,"To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively .","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-Application [SEP] BWA [SEP] B-Citation [SEP] [ 31 ]","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-Citation [SEP] [ 31 ] [SEP] B-Application [SEP] BWA"
24,35,B-Application [SEP] BWA,B-Citation [SEP] [ 32 ],113,"To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively .","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-Application [SEP] BWA [SEP] B-Citation [SEP] [ 32 ]","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-Citation [SEP] [ 32 ] [SEP] B-Application [SEP] BWA"
24,28,B-Application [SEP] BWA,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010910,113,"To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively .","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-Application [SEP] BWA [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010910","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010910 [SEP] B-Application [SEP] BWA"
28,34,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010910,B-Application [SEP] HISAT,113,"To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively .","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010910 [SEP] B-Application [SEP] HISAT","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-Application [SEP] HISAT [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010910"
28,30,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010910,B-Citation [SEP] [ 31 ],113,"To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively .","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010910 [SEP] B-Citation [SEP] [ 31 ]","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-Citation [SEP] [ 31 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010910"
28,35,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010910,B-Citation [SEP] [ 32 ],113,"To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively .","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010910 [SEP] B-Citation [SEP] [ 32 ]","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-Citation [SEP] [ 32 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010910"
28,26,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010910,B-Application [SEP] BWA,113,"To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively .","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010910 [SEP] B-Application [SEP] BWA","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-Application [SEP] BWA [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010910"
28,24,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010910,B-Application [SEP] BWA,113,"To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively .","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010910 [SEP] B-Application [SEP] BWA","To evaluate the completeness and coverage of the assembly , we aligned Illumina DNA and RNA reads to the C . mollissima assembly using BWA ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) [ 31 ] and HISAT [ 32 ] , respectively . [SEP] B-Application [SEP] BWA [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_010910"
10,12,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008,B-Citation [SEP] [ 33 ],114,"In the core gene estimation using BUSCO ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 33 ] , 1 , 392 of the 1 , 440 core genes ( 96 . 7 % ) were found to be complete in the assembled genome , and 1 , 412 ( complete BUSCOs and fragmented BUSCOs ) ( 98 . 1 % ) of the 1 , 440 core genes had at least partial matches ( Table S5 ) .","In the core gene estimation using BUSCO ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 33 ] , 1 , 392 of the 1 , 440 core genes ( 96 . 7 % ) were found to be complete in the assembled genome , and 1 , 412 ( complete BUSCOs and fragmented BUSCOs ) ( 98 . 1 % ) of the 1 , 440 core genes had at least partial matches ( Table S5 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008 [SEP] B-Citation [SEP] [ 33 ]","In the core gene estimation using BUSCO ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 33 ] , 1 , 392 of the 1 , 440 core genes ( 96 . 7 % ) were found to be complete in the assembled genome , and 1 , 412 ( complete BUSCOs and fragmented BUSCOs ) ( 98 . 1 % ) of the 1 , 440 core genes had at least partial matches ( Table S5 ) . [SEP] B-Citation [SEP] [ 33 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008"
10,6,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008,B-Application [SEP] BUSCO,114,"In the core gene estimation using BUSCO ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 33 ] , 1 , 392 of the 1 , 440 core genes ( 96 . 7 % ) were found to be complete in the assembled genome , and 1 , 412 ( complete BUSCOs and fragmented BUSCOs ) ( 98 . 1 % ) of the 1 , 440 core genes had at least partial matches ( Table S5 ) .","In the core gene estimation using BUSCO ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 33 ] , 1 , 392 of the 1 , 440 core genes ( 96 . 7 % ) were found to be complete in the assembled genome , and 1 , 412 ( complete BUSCOs and fragmented BUSCOs ) ( 98 . 1 % ) of the 1 , 440 core genes had at least partial matches ( Table S5 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008 [SEP] B-Application [SEP] BUSCO","In the core gene estimation using BUSCO ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 33 ] , 1 , 392 of the 1 , 440 core genes ( 96 . 7 % ) were found to be complete in the assembled genome , and 1 , 412 ( complete BUSCOs and fragmented BUSCOs ) ( 98 . 1 % ) of the 1 , 440 core genes had at least partial matches ( Table S5 ) . [SEP] B-Application [SEP] BUSCO [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008"
10,8,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008,B-Application [SEP] BUSCO,114,"In the core gene estimation using BUSCO ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 33 ] , 1 , 392 of the 1 , 440 core genes ( 96 . 7 % ) were found to be complete in the assembled genome , and 1 , 412 ( complete BUSCOs and fragmented BUSCOs ) ( 98 . 1 % ) of the 1 , 440 core genes had at least partial matches ( Table S5 ) .","In the core gene estimation using BUSCO ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 33 ] , 1 , 392 of the 1 , 440 core genes ( 96 . 7 % ) were found to be complete in the assembled genome , and 1 , 412 ( complete BUSCOs and fragmented BUSCOs ) ( 98 . 1 % ) of the 1 , 440 core genes had at least partial matches ( Table S5 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008 [SEP] B-Application [SEP] BUSCO","In the core gene estimation using BUSCO ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 33 ] , 1 , 392 of the 1 , 440 core genes ( 96 . 7 % ) were found to be complete in the assembled genome , and 1 , 412 ( complete BUSCOs and fragmented BUSCOs ) ( 98 . 1 % ) of the 1 , 440 core genes had at least partial matches ( Table S5 ) . [SEP] B-Application [SEP] BUSCO [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008"
12,10,B-Citation [SEP] [ 33 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008,114,"In the core gene estimation using BUSCO ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 33 ] , 1 , 392 of the 1 , 440 core genes ( 96 . 7 % ) were found to be complete in the assembled genome , and 1 , 412 ( complete BUSCOs and fragmented BUSCOs ) ( 98 . 1 % ) of the 1 , 440 core genes had at least partial matches ( Table S5 ) .","In the core gene estimation using BUSCO ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 33 ] , 1 , 392 of the 1 , 440 core genes ( 96 . 7 % ) were found to be complete in the assembled genome , and 1 , 412 ( complete BUSCOs and fragmented BUSCOs ) ( 98 . 1 % ) of the 1 , 440 core genes had at least partial matches ( Table S5 ) . [SEP] B-Citation [SEP] [ 33 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008","In the core gene estimation using BUSCO ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 33 ] , 1 , 392 of the 1 , 440 core genes ( 96 . 7 % ) were found to be complete in the assembled genome , and 1 , 412 ( complete BUSCOs and fragmented BUSCOs ) ( 98 . 1 % ) of the 1 , 440 core genes had at least partial matches ( Table S5 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008 [SEP] B-Citation [SEP] [ 33 ]"
12,6,B-Citation [SEP] [ 33 ],B-Application [SEP] BUSCO,114,"In the core gene estimation using BUSCO ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 33 ] , 1 , 392 of the 1 , 440 core genes ( 96 . 7 % ) were found to be complete in the assembled genome , and 1 , 412 ( complete BUSCOs and fragmented BUSCOs ) ( 98 . 1 % ) of the 1 , 440 core genes had at least partial matches ( Table S5 ) .","In the core gene estimation using BUSCO ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 33 ] , 1 , 392 of the 1 , 440 core genes ( 96 . 7 % ) were found to be complete in the assembled genome , and 1 , 412 ( complete BUSCOs and fragmented BUSCOs ) ( 98 . 1 % ) of the 1 , 440 core genes had at least partial matches ( Table S5 ) . [SEP] B-Citation [SEP] [ 33 ] [SEP] B-Application [SEP] BUSCO","In the core gene estimation using BUSCO ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 33 ] , 1 , 392 of the 1 , 440 core genes ( 96 . 7 % ) were found to be complete in the assembled genome , and 1 , 412 ( complete BUSCOs and fragmented BUSCOs ) ( 98 . 1 % ) of the 1 , 440 core genes had at least partial matches ( Table S5 ) . [SEP] B-Application [SEP] BUSCO [SEP] B-Citation [SEP] [ 33 ]"
12,8,B-Citation [SEP] [ 33 ],B-Application [SEP] BUSCO,114,"In the core gene estimation using BUSCO ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 33 ] , 1 , 392 of the 1 , 440 core genes ( 96 . 7 % ) were found to be complete in the assembled genome , and 1 , 412 ( complete BUSCOs and fragmented BUSCOs ) ( 98 . 1 % ) of the 1 , 440 core genes had at least partial matches ( Table S5 ) .","In the core gene estimation using BUSCO ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 33 ] , 1 , 392 of the 1 , 440 core genes ( 96 . 7 % ) were found to be complete in the assembled genome , and 1 , 412 ( complete BUSCOs and fragmented BUSCOs ) ( 98 . 1 % ) of the 1 , 440 core genes had at least partial matches ( Table S5 ) . [SEP] B-Citation [SEP] [ 33 ] [SEP] B-Application [SEP] BUSCO","In the core gene estimation using BUSCO ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 33 ] , 1 , 392 of the 1 , 440 core genes ( 96 . 7 % ) were found to be complete in the assembled genome , and 1 , 412 ( complete BUSCOs and fragmented BUSCOs ) ( 98 . 1 % ) of the 1 , 440 core genes had at least partial matches ( Table S5 ) . [SEP] B-Application [SEP] BUSCO [SEP] B-Citation [SEP] [ 33 ]"
6,10,B-Application [SEP] BUSCO,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008,114,"In the core gene estimation using BUSCO ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 33 ] , 1 , 392 of the 1 , 440 core genes ( 96 . 7 % ) were found to be complete in the assembled genome , and 1 , 412 ( complete BUSCOs and fragmented BUSCOs ) ( 98 . 1 % ) of the 1 , 440 core genes had at least partial matches ( Table S5 ) .","In the core gene estimation using BUSCO ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 33 ] , 1 , 392 of the 1 , 440 core genes ( 96 . 7 % ) were found to be complete in the assembled genome , and 1 , 412 ( complete BUSCOs and fragmented BUSCOs ) ( 98 . 1 % ) of the 1 , 440 core genes had at least partial matches ( Table S5 ) . [SEP] B-Application [SEP] BUSCO [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008","In the core gene estimation using BUSCO ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 33 ] , 1 , 392 of the 1 , 440 core genes ( 96 . 7 % ) were found to be complete in the assembled genome , and 1 , 412 ( complete BUSCOs and fragmented BUSCOs ) ( 98 . 1 % ) of the 1 , 440 core genes had at least partial matches ( Table S5 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008 [SEP] B-Application [SEP] BUSCO"
6,12,B-Application [SEP] BUSCO,B-Citation [SEP] [ 33 ],114,"In the core gene estimation using BUSCO ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 33 ] , 1 , 392 of the 1 , 440 core genes ( 96 . 7 % ) were found to be complete in the assembled genome , and 1 , 412 ( complete BUSCOs and fragmented BUSCOs ) ( 98 . 1 % ) of the 1 , 440 core genes had at least partial matches ( Table S5 ) .","In the core gene estimation using BUSCO ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 33 ] , 1 , 392 of the 1 , 440 core genes ( 96 . 7 % ) were found to be complete in the assembled genome , and 1 , 412 ( complete BUSCOs and fragmented BUSCOs ) ( 98 . 1 % ) of the 1 , 440 core genes had at least partial matches ( Table S5 ) . [SEP] B-Application [SEP] BUSCO [SEP] B-Citation [SEP] [ 33 ]","In the core gene estimation using BUSCO ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 33 ] , 1 , 392 of the 1 , 440 core genes ( 96 . 7 % ) were found to be complete in the assembled genome , and 1 , 412 ( complete BUSCOs and fragmented BUSCOs ) ( 98 . 1 % ) of the 1 , 440 core genes had at least partial matches ( Table S5 ) . [SEP] B-Citation [SEP] [ 33 ] [SEP] B-Application [SEP] BUSCO"
8,10,B-Application [SEP] BUSCO,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008,114,"In the core gene estimation using BUSCO ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 33 ] , 1 , 392 of the 1 , 440 core genes ( 96 . 7 % ) were found to be complete in the assembled genome , and 1 , 412 ( complete BUSCOs and fragmented BUSCOs ) ( 98 . 1 % ) of the 1 , 440 core genes had at least partial matches ( Table S5 ) .","In the core gene estimation using BUSCO ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 33 ] , 1 , 392 of the 1 , 440 core genes ( 96 . 7 % ) were found to be complete in the assembled genome , and 1 , 412 ( complete BUSCOs and fragmented BUSCOs ) ( 98 . 1 % ) of the 1 , 440 core genes had at least partial matches ( Table S5 ) . [SEP] B-Application [SEP] BUSCO [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008","In the core gene estimation using BUSCO ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 33 ] , 1 , 392 of the 1 , 440 core genes ( 96 . 7 % ) were found to be complete in the assembled genome , and 1 , 412 ( complete BUSCOs and fragmented BUSCOs ) ( 98 . 1 % ) of the 1 , 440 core genes had at least partial matches ( Table S5 ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015008 [SEP] B-Application [SEP] BUSCO"
8,12,B-Application [SEP] BUSCO,B-Citation [SEP] [ 33 ],114,"In the core gene estimation using BUSCO ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 33 ] , 1 , 392 of the 1 , 440 core genes ( 96 . 7 % ) were found to be complete in the assembled genome , and 1 , 412 ( complete BUSCOs and fragmented BUSCOs ) ( 98 . 1 % ) of the 1 , 440 core genes had at least partial matches ( Table S5 ) .","In the core gene estimation using BUSCO ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 33 ] , 1 , 392 of the 1 , 440 core genes ( 96 . 7 % ) were found to be complete in the assembled genome , and 1 , 412 ( complete BUSCOs and fragmented BUSCOs ) ( 98 . 1 % ) of the 1 , 440 core genes had at least partial matches ( Table S5 ) . [SEP] B-Application [SEP] BUSCO [SEP] B-Citation [SEP] [ 33 ]","In the core gene estimation using BUSCO ( BUSCO , https://scicrunch.org/resolver/RRID:SCR_015008 ) [ 33 ] , 1 , 392 of the 1 , 440 core genes ( 96 . 7 % ) were found to be complete in the assembled genome , and 1 , 412 ( complete BUSCOs and fragmented BUSCOs ) ( 98 . 1 % ) of the 1 , 440 core genes had at least partial matches ( Table S5 ) . [SEP] B-Citation [SEP] [ 33 ] [SEP] B-Application [SEP] BUSCO"
33,35,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005983,B-Citation [SEP] [ 42 ],115,"To gain greater insights into the evolutionary dynamics of the genes , we determined the expansion and contraction of the orthologous gene clusters in these 8 species with CAFE software ( CAFE , https://scicrunch.org/resolver/RRID:SCR_005983 ) [ 42 ] .","To gain greater insights into the evolutionary dynamics of the genes , we determined the expansion and contraction of the orthologous gene clusters in these 8 species with CAFE software ( CAFE , https://scicrunch.org/resolver/RRID:SCR_005983 ) [ 42 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005983 [SEP] B-Citation [SEP] [ 42 ]","To gain greater insights into the evolutionary dynamics of the genes , we determined the expansion and contraction of the orthologous gene clusters in these 8 species with CAFE software ( CAFE , https://scicrunch.org/resolver/RRID:SCR_005983 ) [ 42 ] . [SEP] B-Citation [SEP] [ 42 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005983"
33,28,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005983,B-Application [SEP] CAFE,115,"To gain greater insights into the evolutionary dynamics of the genes , we determined the expansion and contraction of the orthologous gene clusters in these 8 species with CAFE software ( CAFE , https://scicrunch.org/resolver/RRID:SCR_005983 ) [ 42 ] .","To gain greater insights into the evolutionary dynamics of the genes , we determined the expansion and contraction of the orthologous gene clusters in these 8 species with CAFE software ( CAFE , https://scicrunch.org/resolver/RRID:SCR_005983 ) [ 42 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005983 [SEP] B-Application [SEP] CAFE","To gain greater insights into the evolutionary dynamics of the genes , we determined the expansion and contraction of the orthologous gene clusters in these 8 species with CAFE software ( CAFE , https://scicrunch.org/resolver/RRID:SCR_005983 ) [ 42 ] . [SEP] B-Application [SEP] CAFE [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005983"
33,31,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005983,B-Application [SEP] CAFE,115,"To gain greater insights into the evolutionary dynamics of the genes , we determined the expansion and contraction of the orthologous gene clusters in these 8 species with CAFE software ( CAFE , https://scicrunch.org/resolver/RRID:SCR_005983 ) [ 42 ] .","To gain greater insights into the evolutionary dynamics of the genes , we determined the expansion and contraction of the orthologous gene clusters in these 8 species with CAFE software ( CAFE , https://scicrunch.org/resolver/RRID:SCR_005983 ) [ 42 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005983 [SEP] B-Application [SEP] CAFE","To gain greater insights into the evolutionary dynamics of the genes , we determined the expansion and contraction of the orthologous gene clusters in these 8 species with CAFE software ( CAFE , https://scicrunch.org/resolver/RRID:SCR_005983 ) [ 42 ] . [SEP] B-Application [SEP] CAFE [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005983"
35,33,B-Citation [SEP] [ 42 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005983,115,"To gain greater insights into the evolutionary dynamics of the genes , we determined the expansion and contraction of the orthologous gene clusters in these 8 species with CAFE software ( CAFE , https://scicrunch.org/resolver/RRID:SCR_005983 ) [ 42 ] .","To gain greater insights into the evolutionary dynamics of the genes , we determined the expansion and contraction of the orthologous gene clusters in these 8 species with CAFE software ( CAFE , https://scicrunch.org/resolver/RRID:SCR_005983 ) [ 42 ] . [SEP] B-Citation [SEP] [ 42 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005983","To gain greater insights into the evolutionary dynamics of the genes , we determined the expansion and contraction of the orthologous gene clusters in these 8 species with CAFE software ( CAFE , https://scicrunch.org/resolver/RRID:SCR_005983 ) [ 42 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005983 [SEP] B-Citation [SEP] [ 42 ]"
35,28,B-Citation [SEP] [ 42 ],B-Application [SEP] CAFE,115,"To gain greater insights into the evolutionary dynamics of the genes , we determined the expansion and contraction of the orthologous gene clusters in these 8 species with CAFE software ( CAFE , https://scicrunch.org/resolver/RRID:SCR_005983 ) [ 42 ] .","To gain greater insights into the evolutionary dynamics of the genes , we determined the expansion and contraction of the orthologous gene clusters in these 8 species with CAFE software ( CAFE , https://scicrunch.org/resolver/RRID:SCR_005983 ) [ 42 ] . [SEP] B-Citation [SEP] [ 42 ] [SEP] B-Application [SEP] CAFE","To gain greater insights into the evolutionary dynamics of the genes , we determined the expansion and contraction of the orthologous gene clusters in these 8 species with CAFE software ( CAFE , https://scicrunch.org/resolver/RRID:SCR_005983 ) [ 42 ] . [SEP] B-Application [SEP] CAFE [SEP] B-Citation [SEP] [ 42 ]"
35,31,B-Citation [SEP] [ 42 ],B-Application [SEP] CAFE,115,"To gain greater insights into the evolutionary dynamics of the genes , we determined the expansion and contraction of the orthologous gene clusters in these 8 species with CAFE software ( CAFE , https://scicrunch.org/resolver/RRID:SCR_005983 ) [ 42 ] .","To gain greater insights into the evolutionary dynamics of the genes , we determined the expansion and contraction of the orthologous gene clusters in these 8 species with CAFE software ( CAFE , https://scicrunch.org/resolver/RRID:SCR_005983 ) [ 42 ] . [SEP] B-Citation [SEP] [ 42 ] [SEP] B-Application [SEP] CAFE","To gain greater insights into the evolutionary dynamics of the genes , we determined the expansion and contraction of the orthologous gene clusters in these 8 species with CAFE software ( CAFE , https://scicrunch.org/resolver/RRID:SCR_005983 ) [ 42 ] . [SEP] B-Application [SEP] CAFE [SEP] B-Citation [SEP] [ 42 ]"
28,33,B-Application [SEP] CAFE,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005983,115,"To gain greater insights into the evolutionary dynamics of the genes , we determined the expansion and contraction of the orthologous gene clusters in these 8 species with CAFE software ( CAFE , https://scicrunch.org/resolver/RRID:SCR_005983 ) [ 42 ] .","To gain greater insights into the evolutionary dynamics of the genes , we determined the expansion and contraction of the orthologous gene clusters in these 8 species with CAFE software ( CAFE , https://scicrunch.org/resolver/RRID:SCR_005983 ) [ 42 ] . [SEP] B-Application [SEP] CAFE [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005983","To gain greater insights into the evolutionary dynamics of the genes , we determined the expansion and contraction of the orthologous gene clusters in these 8 species with CAFE software ( CAFE , https://scicrunch.org/resolver/RRID:SCR_005983 ) [ 42 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005983 [SEP] B-Application [SEP] CAFE"
28,35,B-Application [SEP] CAFE,B-Citation [SEP] [ 42 ],115,"To gain greater insights into the evolutionary dynamics of the genes , we determined the expansion and contraction of the orthologous gene clusters in these 8 species with CAFE software ( CAFE , https://scicrunch.org/resolver/RRID:SCR_005983 ) [ 42 ] .","To gain greater insights into the evolutionary dynamics of the genes , we determined the expansion and contraction of the orthologous gene clusters in these 8 species with CAFE software ( CAFE , https://scicrunch.org/resolver/RRID:SCR_005983 ) [ 42 ] . [SEP] B-Application [SEP] CAFE [SEP] B-Citation [SEP] [ 42 ]","To gain greater insights into the evolutionary dynamics of the genes , we determined the expansion and contraction of the orthologous gene clusters in these 8 species with CAFE software ( CAFE , https://scicrunch.org/resolver/RRID:SCR_005983 ) [ 42 ] . [SEP] B-Citation [SEP] [ 42 ] [SEP] B-Application [SEP] CAFE"
31,33,B-Application [SEP] CAFE,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005983,115,"To gain greater insights into the evolutionary dynamics of the genes , we determined the expansion and contraction of the orthologous gene clusters in these 8 species with CAFE software ( CAFE , https://scicrunch.org/resolver/RRID:SCR_005983 ) [ 42 ] .","To gain greater insights into the evolutionary dynamics of the genes , we determined the expansion and contraction of the orthologous gene clusters in these 8 species with CAFE software ( CAFE , https://scicrunch.org/resolver/RRID:SCR_005983 ) [ 42 ] . [SEP] B-Application [SEP] CAFE [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005983","To gain greater insights into the evolutionary dynamics of the genes , we determined the expansion and contraction of the orthologous gene clusters in these 8 species with CAFE software ( CAFE , https://scicrunch.org/resolver/RRID:SCR_005983 ) [ 42 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005983 [SEP] B-Application [SEP] CAFE"
31,35,B-Application [SEP] CAFE,B-Citation [SEP] [ 42 ],115,"To gain greater insights into the evolutionary dynamics of the genes , we determined the expansion and contraction of the orthologous gene clusters in these 8 species with CAFE software ( CAFE , https://scicrunch.org/resolver/RRID:SCR_005983 ) [ 42 ] .","To gain greater insights into the evolutionary dynamics of the genes , we determined the expansion and contraction of the orthologous gene clusters in these 8 species with CAFE software ( CAFE , https://scicrunch.org/resolver/RRID:SCR_005983 ) [ 42 ] . [SEP] B-Application [SEP] CAFE [SEP] B-Citation [SEP] [ 42 ]","To gain greater insights into the evolutionary dynamics of the genes , we determined the expansion and contraction of the orthologous gene clusters in these 8 species with CAFE software ( CAFE , https://scicrunch.org/resolver/RRID:SCR_005983 ) [ 42 ] . [SEP] B-Citation [SEP] [ 42 ] [SEP] B-Application [SEP] CAFE"
14,19,B-Application [SEP] RAxML,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006086,116,"To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) .","To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) . [SEP] B-Application [SEP] RAxML [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006086","To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006086 [SEP] B-Application [SEP] RAxML"
14,22,B-Application [SEP] RAxML,B-Version [SEP] 8 . 0 . 0,116,"To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) .","To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) . [SEP] B-Application [SEP] RAxML [SEP] B-Version [SEP] 8 . 0 . 0","To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) . [SEP] B-Version [SEP] 8 . 0 . 0 [SEP] B-Application [SEP] RAxML"
14,36,B-Application [SEP] RAxML,B-Citation [SEP] [ 43 ],116,"To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) .","To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) . [SEP] B-Application [SEP] RAxML [SEP] B-Citation [SEP] [ 43 ]","To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) . [SEP] B-Citation [SEP] [ 43 ] [SEP] B-Application [SEP] RAxML"
17,19,B-Application [SEP] RAxML,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006086,116,"To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) .","To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) . [SEP] B-Application [SEP] RAxML [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006086","To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006086 [SEP] B-Application [SEP] RAxML"
17,22,B-Application [SEP] RAxML,B-Version [SEP] 8 . 0 . 0,116,"To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) .","To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) . [SEP] B-Application [SEP] RAxML [SEP] B-Version [SEP] 8 . 0 . 0","To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) . [SEP] B-Version [SEP] 8 . 0 . 0 [SEP] B-Application [SEP] RAxML"
17,36,B-Application [SEP] RAxML,B-Citation [SEP] [ 43 ],116,"To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) .","To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) . [SEP] B-Application [SEP] RAxML [SEP] B-Citation [SEP] [ 43 ]","To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) . [SEP] B-Citation [SEP] [ 43 ] [SEP] B-Application [SEP] RAxML"
19,14,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006086,B-Application [SEP] RAxML,116,"To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) .","To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006086 [SEP] B-Application [SEP] RAxML","To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) . [SEP] B-Application [SEP] RAxML [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006086"
19,17,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006086,B-Application [SEP] RAxML,116,"To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) .","To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006086 [SEP] B-Application [SEP] RAxML","To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) . [SEP] B-Application [SEP] RAxML [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006086"
19,22,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006086,B-Version [SEP] 8 . 0 . 0,116,"To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) .","To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006086 [SEP] B-Version [SEP] 8 . 0 . 0","To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) . [SEP] B-Version [SEP] 8 . 0 . 0 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006086"
19,36,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006086,B-Citation [SEP] [ 43 ],116,"To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) .","To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006086 [SEP] B-Citation [SEP] [ 43 ]","To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) . [SEP] B-Citation [SEP] [ 43 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006086"
22,14,B-Version [SEP] 8 . 0 . 0,B-Application [SEP] RAxML,116,"To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) .","To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) . [SEP] B-Version [SEP] 8 . 0 . 0 [SEP] B-Application [SEP] RAxML","To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) . [SEP] B-Application [SEP] RAxML [SEP] B-Version [SEP] 8 . 0 . 0"
22,17,B-Version [SEP] 8 . 0 . 0,B-Application [SEP] RAxML,116,"To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) .","To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) . [SEP] B-Version [SEP] 8 . 0 . 0 [SEP] B-Application [SEP] RAxML","To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) . [SEP] B-Application [SEP] RAxML [SEP] B-Version [SEP] 8 . 0 . 0"
22,19,B-Version [SEP] 8 . 0 . 0,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006086,116,"To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) .","To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) . [SEP] B-Version [SEP] 8 . 0 . 0 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006086","To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006086 [SEP] B-Version [SEP] 8 . 0 . 0"
22,36,B-Version [SEP] 8 . 0 . 0,B-Citation [SEP] [ 43 ],116,"To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) .","To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) . [SEP] B-Version [SEP] 8 . 0 . 0 [SEP] B-Citation [SEP] [ 43 ]","To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) . [SEP] B-Citation [SEP] [ 43 ] [SEP] B-Version [SEP] 8 . 0 . 0"
36,14,B-Citation [SEP] [ 43 ],B-Application [SEP] RAxML,116,"To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) .","To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) . [SEP] B-Citation [SEP] [ 43 ] [SEP] B-Application [SEP] RAxML","To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) . [SEP] B-Application [SEP] RAxML [SEP] B-Citation [SEP] [ 43 ]"
36,17,B-Citation [SEP] [ 43 ],B-Application [SEP] RAxML,116,"To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) .","To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) . [SEP] B-Citation [SEP] [ 43 ] [SEP] B-Application [SEP] RAxML","To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) . [SEP] B-Application [SEP] RAxML [SEP] B-Citation [SEP] [ 43 ]"
36,19,B-Citation [SEP] [ 43 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006086,116,"To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) .","To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) . [SEP] B-Citation [SEP] [ 43 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006086","To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006086 [SEP] B-Citation [SEP] [ 43 ]"
36,22,B-Citation [SEP] [ 43 ],B-Version [SEP] 8 . 0 . 0,116,"To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) .","To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) . [SEP] B-Citation [SEP] [ 43 ] [SEP] B-Version [SEP] 8 . 0 . 0","To examine the evolutionary relationships of Chinese chestnut with other plants , we applied RAxML software ( RAxML , https://scicrunch.org/resolver/RRID:SCR_006086 ; version 8 . 0 . 0 ; substitution model PROTGAMMAJTT , bootstrap value 100 ) [ 43 ] to perform a maximum - likelihood genome - wide phylogenetic analysis of 540 single - copy genes from the 9 plant genomes ( Fig . 2b ) . [SEP] B-Version [SEP] 8 . 0 . 0 [SEP] B-Citation [SEP] [ 43 ]"
35,33,B-Citation [SEP] [ 44 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015247,117,"To estimate the insertion times of the LTR elements , we identified complete LTRs using a combination of de novo searches and manual inspection with LTR _ Finder ( LTR _ Finder , https://scicrunch.org/resolver/RRID:SCR_015247 ) [ 44 ] .","To estimate the insertion times of the LTR elements , we identified complete LTRs using a combination of de novo searches and manual inspection with LTR _ Finder ( LTR _ Finder , https://scicrunch.org/resolver/RRID:SCR_015247 ) [ 44 ] . [SEP] B-Citation [SEP] [ 44 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015247","To estimate the insertion times of the LTR elements , we identified complete LTRs using a combination of de novo searches and manual inspection with LTR _ Finder ( LTR _ Finder , https://scicrunch.org/resolver/RRID:SCR_015247 ) [ 44 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015247 [SEP] B-Citation [SEP] [ 44 ]"
35,25,B-Citation [SEP] [ 44 ],B-Application [SEP] LTR _ Finder,117,"To estimate the insertion times of the LTR elements , we identified complete LTRs using a combination of de novo searches and manual inspection with LTR _ Finder ( LTR _ Finder , https://scicrunch.org/resolver/RRID:SCR_015247 ) [ 44 ] .","To estimate the insertion times of the LTR elements , we identified complete LTRs using a combination of de novo searches and manual inspection with LTR _ Finder ( LTR _ Finder , https://scicrunch.org/resolver/RRID:SCR_015247 ) [ 44 ] . [SEP] B-Citation [SEP] [ 44 ] [SEP] B-Application [SEP] LTR _ Finder","To estimate the insertion times of the LTR elements , we identified complete LTRs using a combination of de novo searches and manual inspection with LTR _ Finder ( LTR _ Finder , https://scicrunch.org/resolver/RRID:SCR_015247 ) [ 44 ] . [SEP] B-Application [SEP] LTR _ Finder [SEP] B-Citation [SEP] [ 44 ]"
35,29,B-Citation [SEP] [ 44 ],B-Application [SEP] LTR _ Finder,117,"To estimate the insertion times of the LTR elements , we identified complete LTRs using a combination of de novo searches and manual inspection with LTR _ Finder ( LTR _ Finder , https://scicrunch.org/resolver/RRID:SCR_015247 ) [ 44 ] .","To estimate the insertion times of the LTR elements , we identified complete LTRs using a combination of de novo searches and manual inspection with LTR _ Finder ( LTR _ Finder , https://scicrunch.org/resolver/RRID:SCR_015247 ) [ 44 ] . [SEP] B-Citation [SEP] [ 44 ] [SEP] B-Application [SEP] LTR _ Finder","To estimate the insertion times of the LTR elements , we identified complete LTRs using a combination of de novo searches and manual inspection with LTR _ Finder ( LTR _ Finder , https://scicrunch.org/resolver/RRID:SCR_015247 ) [ 44 ] . [SEP] B-Application [SEP] LTR _ Finder [SEP] B-Citation [SEP] [ 44 ]"
33,35,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015247,B-Citation [SEP] [ 44 ],117,"To estimate the insertion times of the LTR elements , we identified complete LTRs using a combination of de novo searches and manual inspection with LTR _ Finder ( LTR _ Finder , https://scicrunch.org/resolver/RRID:SCR_015247 ) [ 44 ] .","To estimate the insertion times of the LTR elements , we identified complete LTRs using a combination of de novo searches and manual inspection with LTR _ Finder ( LTR _ Finder , https://scicrunch.org/resolver/RRID:SCR_015247 ) [ 44 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015247 [SEP] B-Citation [SEP] [ 44 ]","To estimate the insertion times of the LTR elements , we identified complete LTRs using a combination of de novo searches and manual inspection with LTR _ Finder ( LTR _ Finder , https://scicrunch.org/resolver/RRID:SCR_015247 ) [ 44 ] . [SEP] B-Citation [SEP] [ 44 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015247"
33,25,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015247,B-Application [SEP] LTR _ Finder,117,"To estimate the insertion times of the LTR elements , we identified complete LTRs using a combination of de novo searches and manual inspection with LTR _ Finder ( LTR _ Finder , https://scicrunch.org/resolver/RRID:SCR_015247 ) [ 44 ] .","To estimate the insertion times of the LTR elements , we identified complete LTRs using a combination of de novo searches and manual inspection with LTR _ Finder ( LTR _ Finder , https://scicrunch.org/resolver/RRID:SCR_015247 ) [ 44 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015247 [SEP] B-Application [SEP] LTR _ Finder","To estimate the insertion times of the LTR elements , we identified complete LTRs using a combination of de novo searches and manual inspection with LTR _ Finder ( LTR _ Finder , https://scicrunch.org/resolver/RRID:SCR_015247 ) [ 44 ] . [SEP] B-Application [SEP] LTR _ Finder [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015247"
33,29,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015247,B-Application [SEP] LTR _ Finder,117,"To estimate the insertion times of the LTR elements , we identified complete LTRs using a combination of de novo searches and manual inspection with LTR _ Finder ( LTR _ Finder , https://scicrunch.org/resolver/RRID:SCR_015247 ) [ 44 ] .","To estimate the insertion times of the LTR elements , we identified complete LTRs using a combination of de novo searches and manual inspection with LTR _ Finder ( LTR _ Finder , https://scicrunch.org/resolver/RRID:SCR_015247 ) [ 44 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015247 [SEP] B-Application [SEP] LTR _ Finder","To estimate the insertion times of the LTR elements , we identified complete LTRs using a combination of de novo searches and manual inspection with LTR _ Finder ( LTR _ Finder , https://scicrunch.org/resolver/RRID:SCR_015247 ) [ 44 ] . [SEP] B-Application [SEP] LTR _ Finder [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015247"
25,35,B-Application [SEP] LTR _ Finder,B-Citation [SEP] [ 44 ],117,"To estimate the insertion times of the LTR elements , we identified complete LTRs using a combination of de novo searches and manual inspection with LTR _ Finder ( LTR _ Finder , https://scicrunch.org/resolver/RRID:SCR_015247 ) [ 44 ] .","To estimate the insertion times of the LTR elements , we identified complete LTRs using a combination of de novo searches and manual inspection with LTR _ Finder ( LTR _ Finder , https://scicrunch.org/resolver/RRID:SCR_015247 ) [ 44 ] . [SEP] B-Application [SEP] LTR _ Finder [SEP] B-Citation [SEP] [ 44 ]","To estimate the insertion times of the LTR elements , we identified complete LTRs using a combination of de novo searches and manual inspection with LTR _ Finder ( LTR _ Finder , https://scicrunch.org/resolver/RRID:SCR_015247 ) [ 44 ] . [SEP] B-Citation [SEP] [ 44 ] [SEP] B-Application [SEP] LTR _ Finder"
25,33,B-Application [SEP] LTR _ Finder,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015247,117,"To estimate the insertion times of the LTR elements , we identified complete LTRs using a combination of de novo searches and manual inspection with LTR _ Finder ( LTR _ Finder , https://scicrunch.org/resolver/RRID:SCR_015247 ) [ 44 ] .","To estimate the insertion times of the LTR elements , we identified complete LTRs using a combination of de novo searches and manual inspection with LTR _ Finder ( LTR _ Finder , https://scicrunch.org/resolver/RRID:SCR_015247 ) [ 44 ] . [SEP] B-Application [SEP] LTR _ Finder [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015247","To estimate the insertion times of the LTR elements , we identified complete LTRs using a combination of de novo searches and manual inspection with LTR _ Finder ( LTR _ Finder , https://scicrunch.org/resolver/RRID:SCR_015247 ) [ 44 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015247 [SEP] B-Application [SEP] LTR _ Finder"
29,35,B-Application [SEP] LTR _ Finder,B-Citation [SEP] [ 44 ],117,"To estimate the insertion times of the LTR elements , we identified complete LTRs using a combination of de novo searches and manual inspection with LTR _ Finder ( LTR _ Finder , https://scicrunch.org/resolver/RRID:SCR_015247 ) [ 44 ] .","To estimate the insertion times of the LTR elements , we identified complete LTRs using a combination of de novo searches and manual inspection with LTR _ Finder ( LTR _ Finder , https://scicrunch.org/resolver/RRID:SCR_015247 ) [ 44 ] . [SEP] B-Application [SEP] LTR _ Finder [SEP] B-Citation [SEP] [ 44 ]","To estimate the insertion times of the LTR elements , we identified complete LTRs using a combination of de novo searches and manual inspection with LTR _ Finder ( LTR _ Finder , https://scicrunch.org/resolver/RRID:SCR_015247 ) [ 44 ] . [SEP] B-Citation [SEP] [ 44 ] [SEP] B-Application [SEP] LTR _ Finder"
29,33,B-Application [SEP] LTR _ Finder,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015247,117,"To estimate the insertion times of the LTR elements , we identified complete LTRs using a combination of de novo searches and manual inspection with LTR _ Finder ( LTR _ Finder , https://scicrunch.org/resolver/RRID:SCR_015247 ) [ 44 ] .","To estimate the insertion times of the LTR elements , we identified complete LTRs using a combination of de novo searches and manual inspection with LTR _ Finder ( LTR _ Finder , https://scicrunch.org/resolver/RRID:SCR_015247 ) [ 44 ] . [SEP] B-Application [SEP] LTR _ Finder [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015247","To estimate the insertion times of the LTR elements , we identified complete LTRs using a combination of de novo searches and manual inspection with LTR _ Finder ( LTR _ Finder , https://scicrunch.org/resolver/RRID:SCR_015247 ) [ 44 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_015247 [SEP] B-Application [SEP] LTR _ Finder"
11,13,B-Application [SEP] OmicShare Tools,B-Citation [SEP] [ 48 ],118,GO enrichment analysis of genes from the TAGs was performed using OmicShare Tools [ 48 ] .,GO enrichment analysis of genes from the TAGs was performed using OmicShare Tools [ 48 ] . [SEP] B-Application [SEP] OmicShare Tools [SEP] B-Citation [SEP] [ 48 ],GO enrichment analysis of genes from the TAGs was performed using OmicShare Tools [ 48 ] . [SEP] B-Citation [SEP] [ 48 ] [SEP] B-Application [SEP] OmicShare Tools
13,11,B-Citation [SEP] [ 48 ],B-Application [SEP] OmicShare Tools,118,GO enrichment analysis of genes from the TAGs was performed using OmicShare Tools [ 48 ] .,GO enrichment analysis of genes from the TAGs was performed using OmicShare Tools [ 48 ] . [SEP] B-Citation [SEP] [ 48 ] [SEP] B-Application [SEP] OmicShare Tools,GO enrichment analysis of genes from the TAGs was performed using OmicShare Tools [ 48 ] . [SEP] B-Application [SEP] OmicShare Tools [SEP] B-Citation [SEP] [ 48 ]
52,90,B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes,B-Application [SEP] PacBio,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes [SEP] B-Application [SEP] PacBio,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] PacBio [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes
52,84,B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes,B-AlternativeName [SEP] National Center for Biotechnology Information,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes
52,82,B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes,B-Application [SEP] NCBI,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes [SEP] B-Application [SEP] NCBI,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] NCBI [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes
52,61,B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes,B-AlternativeName [SEP] euKaryotic Orthologous Groups,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes
52,50,B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes,B-Application [SEP] KEGG,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes [SEP] B-Application [SEP] KEGG,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] KEGG [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes
52,6,B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes,B-Application [SEP] BLAST,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes [SEP] B-Application [SEP] BLAST,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BLAST [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes
52,28,B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes,B-Application [SEP] BWA,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes [SEP] B-Application [SEP] BWA,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BWA [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes
52,21,B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes,B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes
52,19,B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes,B-Application [SEP] BUSCO,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes [SEP] B-Application [SEP] BUSCO,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BUSCO [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes
52,8,B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes,B-AlternativeName [SEP] Basic Local Alignment Search Tool,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes
52,92,B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes,B-AlternativeName [SEP] Pacific Biosciences,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes [SEP] B-AlternativeName [SEP] Pacific Biosciences,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes
52,30,B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes,B-AlternativeName [SEP] Burrows - Wheeler Aligner,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes
90,52,B-Application [SEP] PacBio,B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] PacBio [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes [SEP] B-Application [SEP] PacBio
90,84,B-Application [SEP] PacBio,B-AlternativeName [SEP] National Center for Biotechnology Information,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] PacBio [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-Application [SEP] PacBio
90,82,B-Application [SEP] PacBio,B-Application [SEP] NCBI,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] PacBio [SEP] B-Application [SEP] NCBI,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] NCBI [SEP] B-Application [SEP] PacBio
90,61,B-Application [SEP] PacBio,B-AlternativeName [SEP] euKaryotic Orthologous Groups,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] PacBio [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups [SEP] B-Application [SEP] PacBio
90,50,B-Application [SEP] PacBio,B-Application [SEP] KEGG,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] PacBio [SEP] B-Application [SEP] KEGG,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] KEGG [SEP] B-Application [SEP] PacBio
90,6,B-Application [SEP] PacBio,B-Application [SEP] BLAST,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] PacBio [SEP] B-Application [SEP] BLAST,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BLAST [SEP] B-Application [SEP] PacBio
90,28,B-Application [SEP] PacBio,B-Application [SEP] BWA,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] PacBio [SEP] B-Application [SEP] BWA,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BWA [SEP] B-Application [SEP] PacBio
90,21,B-Application [SEP] PacBio,B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] PacBio [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs [SEP] B-Application [SEP] PacBio
90,19,B-Application [SEP] PacBio,B-Application [SEP] BUSCO,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] PacBio [SEP] B-Application [SEP] BUSCO,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BUSCO [SEP] B-Application [SEP] PacBio
90,8,B-Application [SEP] PacBio,B-AlternativeName [SEP] Basic Local Alignment Search Tool,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] PacBio [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool [SEP] B-Application [SEP] PacBio
90,92,B-Application [SEP] PacBio,B-AlternativeName [SEP] Pacific Biosciences,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] PacBio [SEP] B-AlternativeName [SEP] Pacific Biosciences,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-Application [SEP] PacBio
90,30,B-Application [SEP] PacBio,B-AlternativeName [SEP] Burrows - Wheeler Aligner,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] PacBio [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner [SEP] B-Application [SEP] PacBio
84,52,B-AlternativeName [SEP] National Center for Biotechnology Information,B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information
84,90,B-AlternativeName [SEP] National Center for Biotechnology Information,B-Application [SEP] PacBio,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-Application [SEP] PacBio,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] PacBio [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information
84,82,B-AlternativeName [SEP] National Center for Biotechnology Information,B-Application [SEP] NCBI,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-Application [SEP] NCBI,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] NCBI [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information
84,61,B-AlternativeName [SEP] National Center for Biotechnology Information,B-AlternativeName [SEP] euKaryotic Orthologous Groups,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information
84,50,B-AlternativeName [SEP] National Center for Biotechnology Information,B-Application [SEP] KEGG,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-Application [SEP] KEGG,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] KEGG [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information
84,6,B-AlternativeName [SEP] National Center for Biotechnology Information,B-Application [SEP] BLAST,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-Application [SEP] BLAST,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BLAST [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information
84,28,B-AlternativeName [SEP] National Center for Biotechnology Information,B-Application [SEP] BWA,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-Application [SEP] BWA,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BWA [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information
84,21,B-AlternativeName [SEP] National Center for Biotechnology Information,B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information
84,19,B-AlternativeName [SEP] National Center for Biotechnology Information,B-Application [SEP] BUSCO,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-Application [SEP] BUSCO,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BUSCO [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information
84,8,B-AlternativeName [SEP] National Center for Biotechnology Information,B-AlternativeName [SEP] Basic Local Alignment Search Tool,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information
84,92,B-AlternativeName [SEP] National Center for Biotechnology Information,B-AlternativeName [SEP] Pacific Biosciences,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-AlternativeName [SEP] Pacific Biosciences,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information
84,30,B-AlternativeName [SEP] National Center for Biotechnology Information,B-AlternativeName [SEP] Burrows - Wheeler Aligner,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information
82,52,B-Application [SEP] NCBI,B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] NCBI [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes [SEP] B-Application [SEP] NCBI
82,90,B-Application [SEP] NCBI,B-Application [SEP] PacBio,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] NCBI [SEP] B-Application [SEP] PacBio,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] PacBio [SEP] B-Application [SEP] NCBI
82,84,B-Application [SEP] NCBI,B-AlternativeName [SEP] National Center for Biotechnology Information,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] NCBI [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-Application [SEP] NCBI
82,61,B-Application [SEP] NCBI,B-AlternativeName [SEP] euKaryotic Orthologous Groups,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] NCBI [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups [SEP] B-Application [SEP] NCBI
82,50,B-Application [SEP] NCBI,B-Application [SEP] KEGG,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] NCBI [SEP] B-Application [SEP] KEGG,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] KEGG [SEP] B-Application [SEP] NCBI
82,6,B-Application [SEP] NCBI,B-Application [SEP] BLAST,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] NCBI [SEP] B-Application [SEP] BLAST,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BLAST [SEP] B-Application [SEP] NCBI
82,28,B-Application [SEP] NCBI,B-Application [SEP] BWA,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] NCBI [SEP] B-Application [SEP] BWA,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BWA [SEP] B-Application [SEP] NCBI
82,21,B-Application [SEP] NCBI,B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] NCBI [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs [SEP] B-Application [SEP] NCBI
82,19,B-Application [SEP] NCBI,B-Application [SEP] BUSCO,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] NCBI [SEP] B-Application [SEP] BUSCO,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BUSCO [SEP] B-Application [SEP] NCBI
82,8,B-Application [SEP] NCBI,B-AlternativeName [SEP] Basic Local Alignment Search Tool,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] NCBI [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool [SEP] B-Application [SEP] NCBI
82,92,B-Application [SEP] NCBI,B-AlternativeName [SEP] Pacific Biosciences,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] NCBI [SEP] B-AlternativeName [SEP] Pacific Biosciences,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-Application [SEP] NCBI
82,30,B-Application [SEP] NCBI,B-AlternativeName [SEP] Burrows - Wheeler Aligner,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] NCBI [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner [SEP] B-Application [SEP] NCBI
61,52,B-AlternativeName [SEP] euKaryotic Orthologous Groups,B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups
61,90,B-AlternativeName [SEP] euKaryotic Orthologous Groups,B-Application [SEP] PacBio,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups [SEP] B-Application [SEP] PacBio,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] PacBio [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups
61,84,B-AlternativeName [SEP] euKaryotic Orthologous Groups,B-AlternativeName [SEP] National Center for Biotechnology Information,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups
61,82,B-AlternativeName [SEP] euKaryotic Orthologous Groups,B-Application [SEP] NCBI,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups [SEP] B-Application [SEP] NCBI,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] NCBI [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups
61,50,B-AlternativeName [SEP] euKaryotic Orthologous Groups,B-Application [SEP] KEGG,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups [SEP] B-Application [SEP] KEGG,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] KEGG [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups
61,6,B-AlternativeName [SEP] euKaryotic Orthologous Groups,B-Application [SEP] BLAST,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups [SEP] B-Application [SEP] BLAST,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BLAST [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups
61,28,B-AlternativeName [SEP] euKaryotic Orthologous Groups,B-Application [SEP] BWA,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups [SEP] B-Application [SEP] BWA,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BWA [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups
61,21,B-AlternativeName [SEP] euKaryotic Orthologous Groups,B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups
61,19,B-AlternativeName [SEP] euKaryotic Orthologous Groups,B-Application [SEP] BUSCO,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups [SEP] B-Application [SEP] BUSCO,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BUSCO [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups
61,8,B-AlternativeName [SEP] euKaryotic Orthologous Groups,B-AlternativeName [SEP] Basic Local Alignment Search Tool,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups
61,92,B-AlternativeName [SEP] euKaryotic Orthologous Groups,B-AlternativeName [SEP] Pacific Biosciences,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups [SEP] B-AlternativeName [SEP] Pacific Biosciences,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups
61,30,B-AlternativeName [SEP] euKaryotic Orthologous Groups,B-AlternativeName [SEP] Burrows - Wheeler Aligner,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups
50,52,B-Application [SEP] KEGG,B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] KEGG [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes [SEP] B-Application [SEP] KEGG
50,90,B-Application [SEP] KEGG,B-Application [SEP] PacBio,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] KEGG [SEP] B-Application [SEP] PacBio,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] PacBio [SEP] B-Application [SEP] KEGG
50,84,B-Application [SEP] KEGG,B-AlternativeName [SEP] National Center for Biotechnology Information,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] KEGG [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-Application [SEP] KEGG
50,82,B-Application [SEP] KEGG,B-Application [SEP] NCBI,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] KEGG [SEP] B-Application [SEP] NCBI,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] NCBI [SEP] B-Application [SEP] KEGG
50,61,B-Application [SEP] KEGG,B-AlternativeName [SEP] euKaryotic Orthologous Groups,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] KEGG [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups [SEP] B-Application [SEP] KEGG
50,6,B-Application [SEP] KEGG,B-Application [SEP] BLAST,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] KEGG [SEP] B-Application [SEP] BLAST,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BLAST [SEP] B-Application [SEP] KEGG
50,28,B-Application [SEP] KEGG,B-Application [SEP] BWA,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] KEGG [SEP] B-Application [SEP] BWA,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BWA [SEP] B-Application [SEP] KEGG
50,21,B-Application [SEP] KEGG,B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] KEGG [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs [SEP] B-Application [SEP] KEGG
50,19,B-Application [SEP] KEGG,B-Application [SEP] BUSCO,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] KEGG [SEP] B-Application [SEP] BUSCO,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BUSCO [SEP] B-Application [SEP] KEGG
50,8,B-Application [SEP] KEGG,B-AlternativeName [SEP] Basic Local Alignment Search Tool,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] KEGG [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool [SEP] B-Application [SEP] KEGG
50,92,B-Application [SEP] KEGG,B-AlternativeName [SEP] Pacific Biosciences,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] KEGG [SEP] B-AlternativeName [SEP] Pacific Biosciences,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-Application [SEP] KEGG
50,30,B-Application [SEP] KEGG,B-AlternativeName [SEP] Burrows - Wheeler Aligner,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] KEGG [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner [SEP] B-Application [SEP] KEGG
6,52,B-Application [SEP] BLAST,B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BLAST [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes [SEP] B-Application [SEP] BLAST
6,90,B-Application [SEP] BLAST,B-Application [SEP] PacBio,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BLAST [SEP] B-Application [SEP] PacBio,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] PacBio [SEP] B-Application [SEP] BLAST
6,84,B-Application [SEP] BLAST,B-AlternativeName [SEP] National Center for Biotechnology Information,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BLAST [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-Application [SEP] BLAST
6,82,B-Application [SEP] BLAST,B-Application [SEP] NCBI,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BLAST [SEP] B-Application [SEP] NCBI,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] NCBI [SEP] B-Application [SEP] BLAST
6,61,B-Application [SEP] BLAST,B-AlternativeName [SEP] euKaryotic Orthologous Groups,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BLAST [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups [SEP] B-Application [SEP] BLAST
6,50,B-Application [SEP] BLAST,B-Application [SEP] KEGG,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BLAST [SEP] B-Application [SEP] KEGG,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] KEGG [SEP] B-Application [SEP] BLAST
6,28,B-Application [SEP] BLAST,B-Application [SEP] BWA,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BLAST [SEP] B-Application [SEP] BWA,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BWA [SEP] B-Application [SEP] BLAST
6,21,B-Application [SEP] BLAST,B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BLAST [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs [SEP] B-Application [SEP] BLAST
6,19,B-Application [SEP] BLAST,B-Application [SEP] BUSCO,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BLAST [SEP] B-Application [SEP] BUSCO,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BUSCO [SEP] B-Application [SEP] BLAST
6,8,B-Application [SEP] BLAST,B-AlternativeName [SEP] Basic Local Alignment Search Tool,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BLAST [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool [SEP] B-Application [SEP] BLAST
6,92,B-Application [SEP] BLAST,B-AlternativeName [SEP] Pacific Biosciences,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BLAST [SEP] B-AlternativeName [SEP] Pacific Biosciences,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-Application [SEP] BLAST
6,30,B-Application [SEP] BLAST,B-AlternativeName [SEP] Burrows - Wheeler Aligner,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BLAST [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner [SEP] B-Application [SEP] BLAST
28,52,B-Application [SEP] BWA,B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BWA [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes [SEP] B-Application [SEP] BWA
28,90,B-Application [SEP] BWA,B-Application [SEP] PacBio,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BWA [SEP] B-Application [SEP] PacBio,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] PacBio [SEP] B-Application [SEP] BWA
28,84,B-Application [SEP] BWA,B-AlternativeName [SEP] National Center for Biotechnology Information,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BWA [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-Application [SEP] BWA
28,82,B-Application [SEP] BWA,B-Application [SEP] NCBI,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BWA [SEP] B-Application [SEP] NCBI,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] NCBI [SEP] B-Application [SEP] BWA
28,61,B-Application [SEP] BWA,B-AlternativeName [SEP] euKaryotic Orthologous Groups,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BWA [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups [SEP] B-Application [SEP] BWA
28,50,B-Application [SEP] BWA,B-Application [SEP] KEGG,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BWA [SEP] B-Application [SEP] KEGG,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] KEGG [SEP] B-Application [SEP] BWA
28,6,B-Application [SEP] BWA,B-Application [SEP] BLAST,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BWA [SEP] B-Application [SEP] BLAST,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BLAST [SEP] B-Application [SEP] BWA
28,21,B-Application [SEP] BWA,B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BWA [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs [SEP] B-Application [SEP] BWA
28,19,B-Application [SEP] BWA,B-Application [SEP] BUSCO,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BWA [SEP] B-Application [SEP] BUSCO,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BUSCO [SEP] B-Application [SEP] BWA
28,8,B-Application [SEP] BWA,B-AlternativeName [SEP] Basic Local Alignment Search Tool,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BWA [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool [SEP] B-Application [SEP] BWA
28,92,B-Application [SEP] BWA,B-AlternativeName [SEP] Pacific Biosciences,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BWA [SEP] B-AlternativeName [SEP] Pacific Biosciences,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-Application [SEP] BWA
28,30,B-Application [SEP] BWA,B-AlternativeName [SEP] Burrows - Wheeler Aligner,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BWA [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner [SEP] B-Application [SEP] BWA
21,52,B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs,B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs
21,90,B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs,B-Application [SEP] PacBio,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs [SEP] B-Application [SEP] PacBio,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] PacBio [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs
21,84,B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs,B-AlternativeName [SEP] National Center for Biotechnology Information,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs
21,82,B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs,B-Application [SEP] NCBI,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs [SEP] B-Application [SEP] NCBI,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] NCBI [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs
21,61,B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs,B-AlternativeName [SEP] euKaryotic Orthologous Groups,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs
21,50,B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs,B-Application [SEP] KEGG,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs [SEP] B-Application [SEP] KEGG,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] KEGG [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs
21,6,B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs,B-Application [SEP] BLAST,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs [SEP] B-Application [SEP] BLAST,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BLAST [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs
21,28,B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs,B-Application [SEP] BWA,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs [SEP] B-Application [SEP] BWA,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BWA [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs
21,19,B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs,B-Application [SEP] BUSCO,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs [SEP] B-Application [SEP] BUSCO,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BUSCO [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs
21,8,B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs,B-AlternativeName [SEP] Basic Local Alignment Search Tool,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs
21,92,B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs,B-AlternativeName [SEP] Pacific Biosciences,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs [SEP] B-AlternativeName [SEP] Pacific Biosciences,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs
21,30,B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs,B-AlternativeName [SEP] Burrows - Wheeler Aligner,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs
19,52,B-Application [SEP] BUSCO,B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BUSCO [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes [SEP] B-Application [SEP] BUSCO
19,90,B-Application [SEP] BUSCO,B-Application [SEP] PacBio,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BUSCO [SEP] B-Application [SEP] PacBio,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] PacBio [SEP] B-Application [SEP] BUSCO
19,84,B-Application [SEP] BUSCO,B-AlternativeName [SEP] National Center for Biotechnology Information,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BUSCO [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-Application [SEP] BUSCO
19,82,B-Application [SEP] BUSCO,B-Application [SEP] NCBI,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BUSCO [SEP] B-Application [SEP] NCBI,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] NCBI [SEP] B-Application [SEP] BUSCO
19,61,B-Application [SEP] BUSCO,B-AlternativeName [SEP] euKaryotic Orthologous Groups,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BUSCO [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups [SEP] B-Application [SEP] BUSCO
19,50,B-Application [SEP] BUSCO,B-Application [SEP] KEGG,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BUSCO [SEP] B-Application [SEP] KEGG,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] KEGG [SEP] B-Application [SEP] BUSCO
19,6,B-Application [SEP] BUSCO,B-Application [SEP] BLAST,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BUSCO [SEP] B-Application [SEP] BLAST,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BLAST [SEP] B-Application [SEP] BUSCO
19,28,B-Application [SEP] BUSCO,B-Application [SEP] BWA,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BUSCO [SEP] B-Application [SEP] BWA,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BWA [SEP] B-Application [SEP] BUSCO
19,21,B-Application [SEP] BUSCO,B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BUSCO [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs [SEP] B-Application [SEP] BUSCO
19,8,B-Application [SEP] BUSCO,B-AlternativeName [SEP] Basic Local Alignment Search Tool,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BUSCO [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool [SEP] B-Application [SEP] BUSCO
19,92,B-Application [SEP] BUSCO,B-AlternativeName [SEP] Pacific Biosciences,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BUSCO [SEP] B-AlternativeName [SEP] Pacific Biosciences,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-Application [SEP] BUSCO
19,30,B-Application [SEP] BUSCO,B-AlternativeName [SEP] Burrows - Wheeler Aligner,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BUSCO [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner [SEP] B-Application [SEP] BUSCO
8,52,B-AlternativeName [SEP] Basic Local Alignment Search Tool,B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool
8,90,B-AlternativeName [SEP] Basic Local Alignment Search Tool,B-Application [SEP] PacBio,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool [SEP] B-Application [SEP] PacBio,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] PacBio [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool
8,84,B-AlternativeName [SEP] Basic Local Alignment Search Tool,B-AlternativeName [SEP] National Center for Biotechnology Information,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool
8,82,B-AlternativeName [SEP] Basic Local Alignment Search Tool,B-Application [SEP] NCBI,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool [SEP] B-Application [SEP] NCBI,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] NCBI [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool
8,61,B-AlternativeName [SEP] Basic Local Alignment Search Tool,B-AlternativeName [SEP] euKaryotic Orthologous Groups,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool
8,50,B-AlternativeName [SEP] Basic Local Alignment Search Tool,B-Application [SEP] KEGG,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool [SEP] B-Application [SEP] KEGG,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] KEGG [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool
8,6,B-AlternativeName [SEP] Basic Local Alignment Search Tool,B-Application [SEP] BLAST,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool [SEP] B-Application [SEP] BLAST,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BLAST [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool
8,28,B-AlternativeName [SEP] Basic Local Alignment Search Tool,B-Application [SEP] BWA,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool [SEP] B-Application [SEP] BWA,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BWA [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool
8,21,B-AlternativeName [SEP] Basic Local Alignment Search Tool,B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool
8,19,B-AlternativeName [SEP] Basic Local Alignment Search Tool,B-Application [SEP] BUSCO,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool [SEP] B-Application [SEP] BUSCO,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BUSCO [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool
8,92,B-AlternativeName [SEP] Basic Local Alignment Search Tool,B-AlternativeName [SEP] Pacific Biosciences,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool [SEP] B-AlternativeName [SEP] Pacific Biosciences,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool
8,30,B-AlternativeName [SEP] Basic Local Alignment Search Tool,B-AlternativeName [SEP] Burrows - Wheeler Aligner,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool
92,52,B-AlternativeName [SEP] Pacific Biosciences,B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes [SEP] B-AlternativeName [SEP] Pacific Biosciences
92,90,B-AlternativeName [SEP] Pacific Biosciences,B-Application [SEP] PacBio,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-Application [SEP] PacBio,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] PacBio [SEP] B-AlternativeName [SEP] Pacific Biosciences
92,84,B-AlternativeName [SEP] Pacific Biosciences,B-AlternativeName [SEP] National Center for Biotechnology Information,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-AlternativeName [SEP] Pacific Biosciences
92,82,B-AlternativeName [SEP] Pacific Biosciences,B-Application [SEP] NCBI,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-Application [SEP] NCBI,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] NCBI [SEP] B-AlternativeName [SEP] Pacific Biosciences
92,61,B-AlternativeName [SEP] Pacific Biosciences,B-AlternativeName [SEP] euKaryotic Orthologous Groups,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups [SEP] B-AlternativeName [SEP] Pacific Biosciences
92,50,B-AlternativeName [SEP] Pacific Biosciences,B-Application [SEP] KEGG,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-Application [SEP] KEGG,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] KEGG [SEP] B-AlternativeName [SEP] Pacific Biosciences
92,6,B-AlternativeName [SEP] Pacific Biosciences,B-Application [SEP] BLAST,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-Application [SEP] BLAST,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BLAST [SEP] B-AlternativeName [SEP] Pacific Biosciences
92,28,B-AlternativeName [SEP] Pacific Biosciences,B-Application [SEP] BWA,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-Application [SEP] BWA,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BWA [SEP] B-AlternativeName [SEP] Pacific Biosciences
92,21,B-AlternativeName [SEP] Pacific Biosciences,B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs [SEP] B-AlternativeName [SEP] Pacific Biosciences
92,19,B-AlternativeName [SEP] Pacific Biosciences,B-Application [SEP] BUSCO,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-Application [SEP] BUSCO,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BUSCO [SEP] B-AlternativeName [SEP] Pacific Biosciences
92,8,B-AlternativeName [SEP] Pacific Biosciences,B-AlternativeName [SEP] Basic Local Alignment Search Tool,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool [SEP] B-AlternativeName [SEP] Pacific Biosciences
92,30,B-AlternativeName [SEP] Pacific Biosciences,B-AlternativeName [SEP] Burrows - Wheeler Aligner,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner [SEP] B-AlternativeName [SEP] Pacific Biosciences
30,52,B-AlternativeName [SEP] Burrows - Wheeler Aligner,B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Kyoto Encyclopedia of Genes and Genomes [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner
30,90,B-AlternativeName [SEP] Burrows - Wheeler Aligner,B-Application [SEP] PacBio,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner [SEP] B-Application [SEP] PacBio,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] PacBio [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner
30,84,B-AlternativeName [SEP] Burrows - Wheeler Aligner,B-AlternativeName [SEP] National Center for Biotechnology Information,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner
30,82,B-AlternativeName [SEP] Burrows - Wheeler Aligner,B-Application [SEP] NCBI,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner [SEP] B-Application [SEP] NCBI,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] NCBI [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner
30,61,B-AlternativeName [SEP] Burrows - Wheeler Aligner,B-AlternativeName [SEP] euKaryotic Orthologous Groups,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] euKaryotic Orthologous Groups [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner
30,50,B-AlternativeName [SEP] Burrows - Wheeler Aligner,B-Application [SEP] KEGG,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner [SEP] B-Application [SEP] KEGG,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] KEGG [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner
30,6,B-AlternativeName [SEP] Burrows - Wheeler Aligner,B-Application [SEP] BLAST,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner [SEP] B-Application [SEP] BLAST,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BLAST [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner
30,28,B-AlternativeName [SEP] Burrows - Wheeler Aligner,B-Application [SEP] BWA,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner [SEP] B-Application [SEP] BWA,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BWA [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner
30,21,B-AlternativeName [SEP] Burrows - Wheeler Aligner,B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Benchmarking Universal Single - Copy Orthologs [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner
30,19,B-AlternativeName [SEP] Burrows - Wheeler Aligner,B-Application [SEP] BUSCO,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner [SEP] B-Application [SEP] BUSCO,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-Application [SEP] BUSCO [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner
30,8,B-AlternativeName [SEP] Burrows - Wheeler Aligner,B-AlternativeName [SEP] Basic Local Alignment Search Tool,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Basic Local Alignment Search Tool [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner
30,92,B-AlternativeName [SEP] Burrows - Wheeler Aligner,B-AlternativeName [SEP] Pacific Biosciences,119,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes .,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner [SEP] B-AlternativeName [SEP] Pacific Biosciences,BAC : bacterial artificial chromosome ; BLAST : Basic Local Alignment Search Tool ; bp : base pairs ; BUSCO : Benchmarking Universal Single - Copy Orthologs ; BWA : Burrows - Wheeler Aligner ; Gb : gigabase pairs ; GO : Gene Ontology ; kb : kilobase pairs ; KEGG : Kyoto Encyclopedia of Genes and Genomes ; KOG : euKaryotic Orthologous Groups ; LTR : long terminal repeat ; Mb : megabase pairs ; Mya : million years ago ; NCBI : National Center for Biotechnology Information ; PacBio : Pacific Biosciences ; PE : paired - end ; QTL : quantitative trait locus ; RAxML : Randomized Axelerated Maximum Likelihood ; TAG : tandemly arrayed genes . [SEP] B-AlternativeName [SEP] Pacific Biosciences [SEP] B-AlternativeName [SEP] Burrows - Wheeler Aligner
45,44,B-Citation [SEP] [ 18 ],B-Application [SEP] Galaxy,120,"To enhance compliance with the FAIR principles ( findability , accessibility , interoperability , and reusability ) for scholarly digital objects [ 17 ] , we designed a Reproducible Epigenomic Analysis ( REA ) pipeline for ChIP - seq and RNA - seq using Galaxy [ 18 ] , an open web - based platform where each analytical step is formally documented and can be shared and reproduced .","To enhance compliance with the FAIR principles ( findability , accessibility , interoperability , and reusability ) for scholarly digital objects [ 17 ] , we designed a Reproducible Epigenomic Analysis ( REA ) pipeline for ChIP - seq and RNA - seq using Galaxy [ 18 ] , an open web - based platform where each analytical step is formally documented and can be shared and reproduced . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Application [SEP] Galaxy","To enhance compliance with the FAIR principles ( findability , accessibility , interoperability , and reusability ) for scholarly digital objects [ 17 ] , we designed a Reproducible Epigenomic Analysis ( REA ) pipeline for ChIP - seq and RNA - seq using Galaxy [ 18 ] , an open web - based platform where each analytical step is formally documented and can be shared and reproduced . [SEP] B-Application [SEP] Galaxy [SEP] B-Citation [SEP] [ 18 ]"
44,45,B-Application [SEP] Galaxy,B-Citation [SEP] [ 18 ],120,"To enhance compliance with the FAIR principles ( findability , accessibility , interoperability , and reusability ) for scholarly digital objects [ 17 ] , we designed a Reproducible Epigenomic Analysis ( REA ) pipeline for ChIP - seq and RNA - seq using Galaxy [ 18 ] , an open web - based platform where each analytical step is formally documented and can be shared and reproduced .","To enhance compliance with the FAIR principles ( findability , accessibility , interoperability , and reusability ) for scholarly digital objects [ 17 ] , we designed a Reproducible Epigenomic Analysis ( REA ) pipeline for ChIP - seq and RNA - seq using Galaxy [ 18 ] , an open web - based platform where each analytical step is formally documented and can be shared and reproduced . [SEP] B-Application [SEP] Galaxy [SEP] B-Citation [SEP] [ 18 ]","To enhance compliance with the FAIR principles ( findability , accessibility , interoperability , and reusability ) for scholarly digital objects [ 17 ] , we designed a Reproducible Epigenomic Analysis ( REA ) pipeline for ChIP - seq and RNA - seq using Galaxy [ 18 ] , an open web - based platform where each analytical step is formally documented and can be shared and reproduced . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Application [SEP] Galaxy"
7,11,B-Application [SEP] administered,B-Application [SEP] a,121,These workflows were executed on a locally administered Galaxy server via a Docker container image [ 19 ] .,These workflows were executed on a locally administered Galaxy server via a Docker container image [ 19 ] . [SEP] B-Application [SEP] administered [SEP] B-Application [SEP] a,These workflows were executed on a locally administered Galaxy server via a Docker container image [ 19 ] . [SEP] B-Application [SEP] a [SEP] B-Application [SEP] administered
7,14,B-Application [SEP] administered,B-Citation [SEP] image [ 19,121,These workflows were executed on a locally administered Galaxy server via a Docker container image [ 19 ] .,These workflows were executed on a locally administered Galaxy server via a Docker container image [ 19 ] . [SEP] B-Application [SEP] administered [SEP] B-Citation [SEP] image [ 19,These workflows were executed on a locally administered Galaxy server via a Docker container image [ 19 ] . [SEP] B-Citation [SEP] image [ 19 [SEP] B-Application [SEP] administered
11,7,B-Application [SEP] a,B-Application [SEP] administered,121,These workflows were executed on a locally administered Galaxy server via a Docker container image [ 19 ] .,These workflows were executed on a locally administered Galaxy server via a Docker container image [ 19 ] . [SEP] B-Application [SEP] a [SEP] B-Application [SEP] administered,These workflows were executed on a locally administered Galaxy server via a Docker container image [ 19 ] . [SEP] B-Application [SEP] administered [SEP] B-Application [SEP] a
11,14,B-Application [SEP] a,B-Citation [SEP] image [ 19,121,These workflows were executed on a locally administered Galaxy server via a Docker container image [ 19 ] .,These workflows were executed on a locally administered Galaxy server via a Docker container image [ 19 ] . [SEP] B-Application [SEP] a [SEP] B-Citation [SEP] image [ 19,These workflows were executed on a locally administered Galaxy server via a Docker container image [ 19 ] . [SEP] B-Citation [SEP] image [ 19 [SEP] B-Application [SEP] a
14,7,B-Citation [SEP] image [ 19,B-Application [SEP] administered,121,These workflows were executed on a locally administered Galaxy server via a Docker container image [ 19 ] .,These workflows were executed on a locally administered Galaxy server via a Docker container image [ 19 ] . [SEP] B-Citation [SEP] image [ 19 [SEP] B-Application [SEP] administered,These workflows were executed on a locally administered Galaxy server via a Docker container image [ 19 ] . [SEP] B-Application [SEP] administered [SEP] B-Citation [SEP] image [ 19
14,11,B-Citation [SEP] image [ 19,B-Application [SEP] a,121,These workflows were executed on a locally administered Galaxy server via a Docker container image [ 19 ] .,These workflows were executed on a locally administered Galaxy server via a Docker container image [ 19 ] . [SEP] B-Citation [SEP] image [ 19 [SEP] B-Application [SEP] a,These workflows were executed on a locally administered Galaxy server via a Docker container image [ 19 ] . [SEP] B-Application [SEP] a [SEP] B-Citation [SEP] image [ 19
9,16,B-Application [SEP] Galaxy,B-Application [SEP] Jupyter,122,"Analytical steps that could not be integrated within a Galaxy workflow were captured and documented in Jupyter notebooks [ 20 ] , an open - source interactive computing environment that allows sharing of code , documentation , and results .","Analytical steps that could not be integrated within a Galaxy workflow were captured and documented in Jupyter notebooks [ 20 ] , an open - source interactive computing environment that allows sharing of code , documentation , and results . [SEP] B-Application [SEP] Galaxy [SEP] B-Application [SEP] Jupyter","Analytical steps that could not be integrated within a Galaxy workflow were captured and documented in Jupyter notebooks [ 20 ] , an open - source interactive computing environment that allows sharing of code , documentation , and results . [SEP] B-Application [SEP] Jupyter [SEP] B-Application [SEP] Galaxy"
9,18,B-Application [SEP] Galaxy,B-Citation [SEP] [ 20 ],122,"Analytical steps that could not be integrated within a Galaxy workflow were captured and documented in Jupyter notebooks [ 20 ] , an open - source interactive computing environment that allows sharing of code , documentation , and results .","Analytical steps that could not be integrated within a Galaxy workflow were captured and documented in Jupyter notebooks [ 20 ] , an open - source interactive computing environment that allows sharing of code , documentation , and results . [SEP] B-Application [SEP] Galaxy [SEP] B-Citation [SEP] [ 20 ]","Analytical steps that could not be integrated within a Galaxy workflow were captured and documented in Jupyter notebooks [ 20 ] , an open - source interactive computing environment that allows sharing of code , documentation , and results . [SEP] B-Citation [SEP] [ 20 ] [SEP] B-Application [SEP] Galaxy"
16,9,B-Application [SEP] Jupyter,B-Application [SEP] Galaxy,122,"Analytical steps that could not be integrated within a Galaxy workflow were captured and documented in Jupyter notebooks [ 20 ] , an open - source interactive computing environment that allows sharing of code , documentation , and results .","Analytical steps that could not be integrated within a Galaxy workflow were captured and documented in Jupyter notebooks [ 20 ] , an open - source interactive computing environment that allows sharing of code , documentation , and results . [SEP] B-Application [SEP] Jupyter [SEP] B-Application [SEP] Galaxy","Analytical steps that could not be integrated within a Galaxy workflow were captured and documented in Jupyter notebooks [ 20 ] , an open - source interactive computing environment that allows sharing of code , documentation , and results . [SEP] B-Application [SEP] Galaxy [SEP] B-Application [SEP] Jupyter"
16,18,B-Application [SEP] Jupyter,B-Citation [SEP] [ 20 ],122,"Analytical steps that could not be integrated within a Galaxy workflow were captured and documented in Jupyter notebooks [ 20 ] , an open - source interactive computing environment that allows sharing of code , documentation , and results .","Analytical steps that could not be integrated within a Galaxy workflow were captured and documented in Jupyter notebooks [ 20 ] , an open - source interactive computing environment that allows sharing of code , documentation , and results . [SEP] B-Application [SEP] Jupyter [SEP] B-Citation [SEP] [ 20 ]","Analytical steps that could not be integrated within a Galaxy workflow were captured and documented in Jupyter notebooks [ 20 ] , an open - source interactive computing environment that allows sharing of code , documentation , and results . [SEP] B-Citation [SEP] [ 20 ] [SEP] B-Application [SEP] Jupyter"
18,9,B-Citation [SEP] [ 20 ],B-Application [SEP] Galaxy,122,"Analytical steps that could not be integrated within a Galaxy workflow were captured and documented in Jupyter notebooks [ 20 ] , an open - source interactive computing environment that allows sharing of code , documentation , and results .","Analytical steps that could not be integrated within a Galaxy workflow were captured and documented in Jupyter notebooks [ 20 ] , an open - source interactive computing environment that allows sharing of code , documentation , and results . [SEP] B-Citation [SEP] [ 20 ] [SEP] B-Application [SEP] Galaxy","Analytical steps that could not be integrated within a Galaxy workflow were captured and documented in Jupyter notebooks [ 20 ] , an open - source interactive computing environment that allows sharing of code , documentation , and results . [SEP] B-Application [SEP] Galaxy [SEP] B-Citation [SEP] [ 20 ]"
18,16,B-Citation [SEP] [ 20 ],B-Application [SEP] Jupyter,122,"Analytical steps that could not be integrated within a Galaxy workflow were captured and documented in Jupyter notebooks [ 20 ] , an open - source interactive computing environment that allows sharing of code , documentation , and results .","Analytical steps that could not be integrated within a Galaxy workflow were captured and documented in Jupyter notebooks [ 20 ] , an open - source interactive computing environment that allows sharing of code , documentation , and results . [SEP] B-Citation [SEP] [ 20 ] [SEP] B-Application [SEP] Jupyter","Analytical steps that could not be integrated within a Galaxy workflow were captured and documented in Jupyter notebooks [ 20 ] , an open - source interactive computing environment that allows sharing of code , documentation , and results . [SEP] B-Application [SEP] Jupyter [SEP] B-Citation [SEP] [ 20 ]"
18,16,B-Citation [SEP] [ 22 ],B-Application [SEP] Zenodo,123,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] .,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] . [SEP] B-Citation [SEP] [ 22 ] [SEP] B-Application [SEP] Zenodo,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] . [SEP] B-Application [SEP] Zenodo [SEP] B-Citation [SEP] [ 22 ]
18,9,B-Citation [SEP] [ 22 ],B-Citation [SEP] [ 21 ],123,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] .,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] . [SEP] B-Citation [SEP] [ 22 ] [SEP] B-Citation [SEP] [ 21 ],The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] . [SEP] B-Citation [SEP] [ 21 ] [SEP] B-Citation [SEP] [ 22 ]
18,7,B-Citation [SEP] [ 22 ],B-Application [SEP] GitHub,123,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] .,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] . [SEP] B-Citation [SEP] [ 22 ] [SEP] B-Application [SEP] GitHub,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] . [SEP] B-Application [SEP] GitHub [SEP] B-Citation [SEP] [ 22 ]
18,1,B-Citation [SEP] [ 22 ],B-PlugIn [SEP] REA pipeline,123,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] .,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] . [SEP] B-Citation [SEP] [ 22 ] [SEP] B-PlugIn [SEP] REA pipeline,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] . [SEP] B-PlugIn [SEP] REA pipeline [SEP] B-Citation [SEP] [ 22 ]
16,18,B-Application [SEP] Zenodo,B-Citation [SEP] [ 22 ],123,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] .,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] . [SEP] B-Application [SEP] Zenodo [SEP] B-Citation [SEP] [ 22 ],The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] . [SEP] B-Citation [SEP] [ 22 ] [SEP] B-Application [SEP] Zenodo
16,9,B-Application [SEP] Zenodo,B-Citation [SEP] [ 21 ],123,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] .,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] . [SEP] B-Application [SEP] Zenodo [SEP] B-Citation [SEP] [ 21 ],The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] . [SEP] B-Citation [SEP] [ 21 ] [SEP] B-Application [SEP] Zenodo
16,7,B-Application [SEP] Zenodo,B-Application [SEP] GitHub,123,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] .,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] . [SEP] B-Application [SEP] Zenodo [SEP] B-Application [SEP] GitHub,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] . [SEP] B-Application [SEP] GitHub [SEP] B-Application [SEP] Zenodo
16,1,B-Application [SEP] Zenodo,B-PlugIn [SEP] REA pipeline,123,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] .,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] . [SEP] B-Application [SEP] Zenodo [SEP] B-PlugIn [SEP] REA pipeline,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] . [SEP] B-PlugIn [SEP] REA pipeline [SEP] B-Application [SEP] Zenodo
9,18,B-Citation [SEP] [ 21 ],B-Citation [SEP] [ 22 ],123,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] .,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] . [SEP] B-Citation [SEP] [ 21 ] [SEP] B-Citation [SEP] [ 22 ],The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] . [SEP] B-Citation [SEP] [ 22 ] [SEP] B-Citation [SEP] [ 21 ]
9,16,B-Citation [SEP] [ 21 ],B-Application [SEP] Zenodo,123,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] .,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] . [SEP] B-Citation [SEP] [ 21 ] [SEP] B-Application [SEP] Zenodo,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] . [SEP] B-Application [SEP] Zenodo [SEP] B-Citation [SEP] [ 21 ]
9,7,B-Citation [SEP] [ 21 ],B-Application [SEP] GitHub,123,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] .,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] . [SEP] B-Citation [SEP] [ 21 ] [SEP] B-Application [SEP] GitHub,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] . [SEP] B-Application [SEP] GitHub [SEP] B-Citation [SEP] [ 21 ]
9,1,B-Citation [SEP] [ 21 ],B-PlugIn [SEP] REA pipeline,123,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] .,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] . [SEP] B-Citation [SEP] [ 21 ] [SEP] B-PlugIn [SEP] REA pipeline,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] . [SEP] B-PlugIn [SEP] REA pipeline [SEP] B-Citation [SEP] [ 21 ]
7,18,B-Application [SEP] GitHub,B-Citation [SEP] [ 22 ],123,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] .,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] . [SEP] B-Application [SEP] GitHub [SEP] B-Citation [SEP] [ 22 ],The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] . [SEP] B-Citation [SEP] [ 22 ] [SEP] B-Application [SEP] GitHub
7,16,B-Application [SEP] GitHub,B-Application [SEP] Zenodo,123,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] .,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] . [SEP] B-Application [SEP] GitHub [SEP] B-Application [SEP] Zenodo,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] . [SEP] B-Application [SEP] Zenodo [SEP] B-Application [SEP] GitHub
7,9,B-Application [SEP] GitHub,B-Citation [SEP] [ 21 ],123,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] .,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] . [SEP] B-Application [SEP] GitHub [SEP] B-Citation [SEP] [ 21 ],The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] . [SEP] B-Citation [SEP] [ 21 ] [SEP] B-Application [SEP] GitHub
7,1,B-Application [SEP] GitHub,B-PlugIn [SEP] REA pipeline,123,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] .,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] . [SEP] B-Application [SEP] GitHub [SEP] B-PlugIn [SEP] REA pipeline,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] . [SEP] B-PlugIn [SEP] REA pipeline [SEP] B-Application [SEP] GitHub
1,18,B-PlugIn [SEP] REA pipeline,B-Citation [SEP] [ 22 ],123,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] .,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] . [SEP] B-PlugIn [SEP] REA pipeline [SEP] B-Citation [SEP] [ 22 ],The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] . [SEP] B-Citation [SEP] [ 22 ] [SEP] B-PlugIn [SEP] REA pipeline
1,16,B-PlugIn [SEP] REA pipeline,B-Application [SEP] Zenodo,123,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] .,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] . [SEP] B-PlugIn [SEP] REA pipeline [SEP] B-Application [SEP] Zenodo,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] . [SEP] B-Application [SEP] Zenodo [SEP] B-PlugIn [SEP] REA pipeline
1,9,B-PlugIn [SEP] REA pipeline,B-Citation [SEP] [ 21 ],123,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] .,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] . [SEP] B-PlugIn [SEP] REA pipeline [SEP] B-Citation [SEP] [ 21 ],The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] . [SEP] B-Citation [SEP] [ 21 ] [SEP] B-PlugIn [SEP] REA pipeline
1,7,B-PlugIn [SEP] REA pipeline,B-Application [SEP] GitHub,123,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] .,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] . [SEP] B-PlugIn [SEP] REA pipeline [SEP] B-Application [SEP] GitHub,The REA pipeline is available in the GitHub repository [ 21 ] and in the associated Zenodo release [ 22 ] . [SEP] B-Application [SEP] GitHub [SEP] B-PlugIn [SEP] REA pipeline
56,55,B-Citation [SEP] [ 27 ],B-Version [SEP] 2,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 27 ] [SEP] B-Version [SEP] 2","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 27 ]"
56,54,B-Citation [SEP] [ 27 ],B-Application [SEP] DESeq,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 27 ] [SEP] B-Application [SEP] DESeq","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] DESeq [SEP] B-Citation [SEP] [ 27 ]"
56,41,B-Citation [SEP] [ 27 ],B-Citation [SEP] [ 26 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 27 ] [SEP] B-Citation [SEP] [ 26 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 26 ] [SEP] B-Citation [SEP] [ 27 ]"
56,40,B-Citation [SEP] [ 27 ],B-Application [SEP] MAnorm,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 27 ] [SEP] B-Application [SEP] MAnorm","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] MAnorm [SEP] B-Citation [SEP] [ 27 ]"
56,30,B-Citation [SEP] [ 27 ],B-Citation [SEP] [ 25 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 27 ] [SEP] B-Citation [SEP] [ 25 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Citation [SEP] [ 27 ]"
56,8,B-Citation [SEP] [ 27 ],B-Version [SEP] 2,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 27 ] [SEP] B-Version [SEP] 2","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 27 ]"
56,28,B-Citation [SEP] [ 27 ],B-Application [SEP] epic,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 27 ] [SEP] B-Application [SEP] epic","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] epic [SEP] B-Citation [SEP] [ 27 ]"
56,20,B-Citation [SEP] [ 27 ],B-Citation [SEP] [ 24 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 27 ] [SEP] B-Citation [SEP] [ 24 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 24 ] [SEP] B-Citation [SEP] [ 27 ]"
56,19,B-Citation [SEP] [ 27 ],B-Application [SEP] HTSeq,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 27 ] [SEP] B-Application [SEP] HTSeq","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] HTSeq [SEP] B-Citation [SEP] [ 27 ]"
56,9,B-Citation [SEP] [ 27 ],B-Citation [SEP] [ 23 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 27 ] [SEP] B-Citation [SEP] [ 23 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 23 ] [SEP] B-Citation [SEP] [ 27 ]"
56,7,B-Citation [SEP] [ 27 ],B-Application [SEP] Bowtie,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 27 ] [SEP] B-Application [SEP] Bowtie","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] Bowtie [SEP] B-Citation [SEP] [ 27 ]"
56,29,B-Citation [SEP] [ 27 ],B-Version [SEP] 2,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 27 ] [SEP] B-Version [SEP] 2","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 27 ]"
55,56,B-Version [SEP] 2,B-Citation [SEP] [ 27 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 27 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 27 ] [SEP] B-Version [SEP] 2"
55,54,B-Version [SEP] 2,B-Application [SEP] DESeq,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] DESeq","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] DESeq [SEP] B-Version [SEP] 2"
55,41,B-Version [SEP] 2,B-Citation [SEP] [ 26 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 26 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 26 ] [SEP] B-Version [SEP] 2"
55,40,B-Version [SEP] 2,B-Application [SEP] MAnorm,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] MAnorm","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] MAnorm [SEP] B-Version [SEP] 2"
55,30,B-Version [SEP] 2,B-Citation [SEP] [ 25 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 25 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Version [SEP] 2"
55,28,B-Version [SEP] 2,B-Application [SEP] epic,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] epic","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] epic [SEP] B-Version [SEP] 2"
55,20,B-Version [SEP] 2,B-Citation [SEP] [ 24 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 24 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 24 ] [SEP] B-Version [SEP] 2"
55,19,B-Version [SEP] 2,B-Application [SEP] HTSeq,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] HTSeq","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] HTSeq [SEP] B-Version [SEP] 2"
55,9,B-Version [SEP] 2,B-Citation [SEP] [ 23 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 23 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 23 ] [SEP] B-Version [SEP] 2"
55,7,B-Version [SEP] 2,B-Application [SEP] Bowtie,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] Bowtie","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] Bowtie [SEP] B-Version [SEP] 2"
54,56,B-Application [SEP] DESeq,B-Citation [SEP] [ 27 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] DESeq [SEP] B-Citation [SEP] [ 27 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 27 ] [SEP] B-Application [SEP] DESeq"
54,55,B-Application [SEP] DESeq,B-Version [SEP] 2,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] DESeq [SEP] B-Version [SEP] 2","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] DESeq"
54,41,B-Application [SEP] DESeq,B-Citation [SEP] [ 26 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] DESeq [SEP] B-Citation [SEP] [ 26 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 26 ] [SEP] B-Application [SEP] DESeq"
54,40,B-Application [SEP] DESeq,B-Application [SEP] MAnorm,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] DESeq [SEP] B-Application [SEP] MAnorm","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] MAnorm [SEP] B-Application [SEP] DESeq"
54,30,B-Application [SEP] DESeq,B-Citation [SEP] [ 25 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] DESeq [SEP] B-Citation [SEP] [ 25 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Application [SEP] DESeq"
54,8,B-Application [SEP] DESeq,B-Version [SEP] 2,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] DESeq [SEP] B-Version [SEP] 2","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] DESeq"
54,28,B-Application [SEP] DESeq,B-Application [SEP] epic,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] DESeq [SEP] B-Application [SEP] epic","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] epic [SEP] B-Application [SEP] DESeq"
54,20,B-Application [SEP] DESeq,B-Citation [SEP] [ 24 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] DESeq [SEP] B-Citation [SEP] [ 24 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 24 ] [SEP] B-Application [SEP] DESeq"
54,19,B-Application [SEP] DESeq,B-Application [SEP] HTSeq,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] DESeq [SEP] B-Application [SEP] HTSeq","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] HTSeq [SEP] B-Application [SEP] DESeq"
54,9,B-Application [SEP] DESeq,B-Citation [SEP] [ 23 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] DESeq [SEP] B-Citation [SEP] [ 23 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 23 ] [SEP] B-Application [SEP] DESeq"
54,7,B-Application [SEP] DESeq,B-Application [SEP] Bowtie,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] DESeq [SEP] B-Application [SEP] Bowtie","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] Bowtie [SEP] B-Application [SEP] DESeq"
54,29,B-Application [SEP] DESeq,B-Version [SEP] 2,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] DESeq [SEP] B-Version [SEP] 2","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] DESeq"
41,56,B-Citation [SEP] [ 26 ],B-Citation [SEP] [ 27 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 26 ] [SEP] B-Citation [SEP] [ 27 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 27 ] [SEP] B-Citation [SEP] [ 26 ]"
41,55,B-Citation [SEP] [ 26 ],B-Version [SEP] 2,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 26 ] [SEP] B-Version [SEP] 2","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 26 ]"
41,54,B-Citation [SEP] [ 26 ],B-Application [SEP] DESeq,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 26 ] [SEP] B-Application [SEP] DESeq","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] DESeq [SEP] B-Citation [SEP] [ 26 ]"
41,40,B-Citation [SEP] [ 26 ],B-Application [SEP] MAnorm,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 26 ] [SEP] B-Application [SEP] MAnorm","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] MAnorm [SEP] B-Citation [SEP] [ 26 ]"
41,30,B-Citation [SEP] [ 26 ],B-Citation [SEP] [ 25 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 26 ] [SEP] B-Citation [SEP] [ 25 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Citation [SEP] [ 26 ]"
41,8,B-Citation [SEP] [ 26 ],B-Version [SEP] 2,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 26 ] [SEP] B-Version [SEP] 2","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 26 ]"
41,28,B-Citation [SEP] [ 26 ],B-Application [SEP] epic,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 26 ] [SEP] B-Application [SEP] epic","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] epic [SEP] B-Citation [SEP] [ 26 ]"
41,20,B-Citation [SEP] [ 26 ],B-Citation [SEP] [ 24 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 26 ] [SEP] B-Citation [SEP] [ 24 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 24 ] [SEP] B-Citation [SEP] [ 26 ]"
41,19,B-Citation [SEP] [ 26 ],B-Application [SEP] HTSeq,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 26 ] [SEP] B-Application [SEP] HTSeq","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] HTSeq [SEP] B-Citation [SEP] [ 26 ]"
41,9,B-Citation [SEP] [ 26 ],B-Citation [SEP] [ 23 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 26 ] [SEP] B-Citation [SEP] [ 23 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 23 ] [SEP] B-Citation [SEP] [ 26 ]"
41,7,B-Citation [SEP] [ 26 ],B-Application [SEP] Bowtie,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 26 ] [SEP] B-Application [SEP] Bowtie","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] Bowtie [SEP] B-Citation [SEP] [ 26 ]"
41,29,B-Citation [SEP] [ 26 ],B-Version [SEP] 2,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 26 ] [SEP] B-Version [SEP] 2","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 26 ]"
40,56,B-Application [SEP] MAnorm,B-Citation [SEP] [ 27 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] MAnorm [SEP] B-Citation [SEP] [ 27 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 27 ] [SEP] B-Application [SEP] MAnorm"
40,55,B-Application [SEP] MAnorm,B-Version [SEP] 2,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] MAnorm [SEP] B-Version [SEP] 2","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] MAnorm"
40,54,B-Application [SEP] MAnorm,B-Application [SEP] DESeq,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] MAnorm [SEP] B-Application [SEP] DESeq","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] DESeq [SEP] B-Application [SEP] MAnorm"
40,41,B-Application [SEP] MAnorm,B-Citation [SEP] [ 26 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] MAnorm [SEP] B-Citation [SEP] [ 26 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 26 ] [SEP] B-Application [SEP] MAnorm"
40,30,B-Application [SEP] MAnorm,B-Citation [SEP] [ 25 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] MAnorm [SEP] B-Citation [SEP] [ 25 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Application [SEP] MAnorm"
40,8,B-Application [SEP] MAnorm,B-Version [SEP] 2,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] MAnorm [SEP] B-Version [SEP] 2","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] MAnorm"
40,28,B-Application [SEP] MAnorm,B-Application [SEP] epic,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] MAnorm [SEP] B-Application [SEP] epic","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] epic [SEP] B-Application [SEP] MAnorm"
40,20,B-Application [SEP] MAnorm,B-Citation [SEP] [ 24 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] MAnorm [SEP] B-Citation [SEP] [ 24 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 24 ] [SEP] B-Application [SEP] MAnorm"
40,19,B-Application [SEP] MAnorm,B-Application [SEP] HTSeq,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] MAnorm [SEP] B-Application [SEP] HTSeq","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] HTSeq [SEP] B-Application [SEP] MAnorm"
40,9,B-Application [SEP] MAnorm,B-Citation [SEP] [ 23 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] MAnorm [SEP] B-Citation [SEP] [ 23 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 23 ] [SEP] B-Application [SEP] MAnorm"
40,7,B-Application [SEP] MAnorm,B-Application [SEP] Bowtie,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] MAnorm [SEP] B-Application [SEP] Bowtie","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] Bowtie [SEP] B-Application [SEP] MAnorm"
40,29,B-Application [SEP] MAnorm,B-Version [SEP] 2,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] MAnorm [SEP] B-Version [SEP] 2","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] MAnorm"
30,56,B-Citation [SEP] [ 25 ],B-Citation [SEP] [ 27 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Citation [SEP] [ 27 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 27 ] [SEP] B-Citation [SEP] [ 25 ]"
30,55,B-Citation [SEP] [ 25 ],B-Version [SEP] 2,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Version [SEP] 2","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 25 ]"
30,54,B-Citation [SEP] [ 25 ],B-Application [SEP] DESeq,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Application [SEP] DESeq","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] DESeq [SEP] B-Citation [SEP] [ 25 ]"
30,41,B-Citation [SEP] [ 25 ],B-Citation [SEP] [ 26 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Citation [SEP] [ 26 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 26 ] [SEP] B-Citation [SEP] [ 25 ]"
30,40,B-Citation [SEP] [ 25 ],B-Application [SEP] MAnorm,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Application [SEP] MAnorm","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] MAnorm [SEP] B-Citation [SEP] [ 25 ]"
30,8,B-Citation [SEP] [ 25 ],B-Version [SEP] 2,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Version [SEP] 2","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 25 ]"
30,28,B-Citation [SEP] [ 25 ],B-Application [SEP] epic,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Application [SEP] epic","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] epic [SEP] B-Citation [SEP] [ 25 ]"
30,20,B-Citation [SEP] [ 25 ],B-Citation [SEP] [ 24 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Citation [SEP] [ 24 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 24 ] [SEP] B-Citation [SEP] [ 25 ]"
30,19,B-Citation [SEP] [ 25 ],B-Application [SEP] HTSeq,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Application [SEP] HTSeq","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] HTSeq [SEP] B-Citation [SEP] [ 25 ]"
30,9,B-Citation [SEP] [ 25 ],B-Citation [SEP] [ 23 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Citation [SEP] [ 23 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 23 ] [SEP] B-Citation [SEP] [ 25 ]"
30,7,B-Citation [SEP] [ 25 ],B-Application [SEP] Bowtie,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Application [SEP] Bowtie","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] Bowtie [SEP] B-Citation [SEP] [ 25 ]"
30,29,B-Citation [SEP] [ 25 ],B-Version [SEP] 2,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Version [SEP] 2","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 25 ]"
8,56,B-Version [SEP] 2,B-Citation [SEP] [ 27 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 27 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 27 ] [SEP] B-Version [SEP] 2"
8,54,B-Version [SEP] 2,B-Application [SEP] DESeq,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] DESeq","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] DESeq [SEP] B-Version [SEP] 2"
8,41,B-Version [SEP] 2,B-Citation [SEP] [ 26 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 26 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 26 ] [SEP] B-Version [SEP] 2"
8,40,B-Version [SEP] 2,B-Application [SEP] MAnorm,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] MAnorm","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] MAnorm [SEP] B-Version [SEP] 2"
8,30,B-Version [SEP] 2,B-Citation [SEP] [ 25 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 25 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Version [SEP] 2"
8,28,B-Version [SEP] 2,B-Application [SEP] epic,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] epic","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] epic [SEP] B-Version [SEP] 2"
8,20,B-Version [SEP] 2,B-Citation [SEP] [ 24 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 24 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 24 ] [SEP] B-Version [SEP] 2"
8,19,B-Version [SEP] 2,B-Application [SEP] HTSeq,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] HTSeq","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] HTSeq [SEP] B-Version [SEP] 2"
8,9,B-Version [SEP] 2,B-Citation [SEP] [ 23 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 23 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 23 ] [SEP] B-Version [SEP] 2"
8,7,B-Version [SEP] 2,B-Application [SEP] Bowtie,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] Bowtie","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] Bowtie [SEP] B-Version [SEP] 2"
28,56,B-Application [SEP] epic,B-Citation [SEP] [ 27 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] epic [SEP] B-Citation [SEP] [ 27 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 27 ] [SEP] B-Application [SEP] epic"
28,55,B-Application [SEP] epic,B-Version [SEP] 2,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] epic [SEP] B-Version [SEP] 2","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] epic"
28,54,B-Application [SEP] epic,B-Application [SEP] DESeq,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] epic [SEP] B-Application [SEP] DESeq","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] DESeq [SEP] B-Application [SEP] epic"
28,41,B-Application [SEP] epic,B-Citation [SEP] [ 26 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] epic [SEP] B-Citation [SEP] [ 26 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 26 ] [SEP] B-Application [SEP] epic"
28,40,B-Application [SEP] epic,B-Application [SEP] MAnorm,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] epic [SEP] B-Application [SEP] MAnorm","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] MAnorm [SEP] B-Application [SEP] epic"
28,30,B-Application [SEP] epic,B-Citation [SEP] [ 25 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] epic [SEP] B-Citation [SEP] [ 25 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Application [SEP] epic"
28,8,B-Application [SEP] epic,B-Version [SEP] 2,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] epic [SEP] B-Version [SEP] 2","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] epic"
28,20,B-Application [SEP] epic,B-Citation [SEP] [ 24 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] epic [SEP] B-Citation [SEP] [ 24 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 24 ] [SEP] B-Application [SEP] epic"
28,19,B-Application [SEP] epic,B-Application [SEP] HTSeq,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] epic [SEP] B-Application [SEP] HTSeq","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] HTSeq [SEP] B-Application [SEP] epic"
28,9,B-Application [SEP] epic,B-Citation [SEP] [ 23 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] epic [SEP] B-Citation [SEP] [ 23 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 23 ] [SEP] B-Application [SEP] epic"
28,7,B-Application [SEP] epic,B-Application [SEP] Bowtie,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] epic [SEP] B-Application [SEP] Bowtie","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] Bowtie [SEP] B-Application [SEP] epic"
28,29,B-Application [SEP] epic,B-Version [SEP] 2,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] epic [SEP] B-Version [SEP] 2","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] epic"
20,56,B-Citation [SEP] [ 24 ],B-Citation [SEP] [ 27 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 24 ] [SEP] B-Citation [SEP] [ 27 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 27 ] [SEP] B-Citation [SEP] [ 24 ]"
20,55,B-Citation [SEP] [ 24 ],B-Version [SEP] 2,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 24 ] [SEP] B-Version [SEP] 2","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 24 ]"
20,54,B-Citation [SEP] [ 24 ],B-Application [SEP] DESeq,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 24 ] [SEP] B-Application [SEP] DESeq","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] DESeq [SEP] B-Citation [SEP] [ 24 ]"
20,41,B-Citation [SEP] [ 24 ],B-Citation [SEP] [ 26 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 24 ] [SEP] B-Citation [SEP] [ 26 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 26 ] [SEP] B-Citation [SEP] [ 24 ]"
20,40,B-Citation [SEP] [ 24 ],B-Application [SEP] MAnorm,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 24 ] [SEP] B-Application [SEP] MAnorm","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] MAnorm [SEP] B-Citation [SEP] [ 24 ]"
20,30,B-Citation [SEP] [ 24 ],B-Citation [SEP] [ 25 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 24 ] [SEP] B-Citation [SEP] [ 25 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Citation [SEP] [ 24 ]"
20,8,B-Citation [SEP] [ 24 ],B-Version [SEP] 2,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 24 ] [SEP] B-Version [SEP] 2","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 24 ]"
20,28,B-Citation [SEP] [ 24 ],B-Application [SEP] epic,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 24 ] [SEP] B-Application [SEP] epic","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] epic [SEP] B-Citation [SEP] [ 24 ]"
20,19,B-Citation [SEP] [ 24 ],B-Application [SEP] HTSeq,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 24 ] [SEP] B-Application [SEP] HTSeq","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] HTSeq [SEP] B-Citation [SEP] [ 24 ]"
20,9,B-Citation [SEP] [ 24 ],B-Citation [SEP] [ 23 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 24 ] [SEP] B-Citation [SEP] [ 23 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 23 ] [SEP] B-Citation [SEP] [ 24 ]"
20,7,B-Citation [SEP] [ 24 ],B-Application [SEP] Bowtie,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 24 ] [SEP] B-Application [SEP] Bowtie","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] Bowtie [SEP] B-Citation [SEP] [ 24 ]"
20,29,B-Citation [SEP] [ 24 ],B-Version [SEP] 2,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 24 ] [SEP] B-Version [SEP] 2","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 24 ]"
19,56,B-Application [SEP] HTSeq,B-Citation [SEP] [ 27 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] HTSeq [SEP] B-Citation [SEP] [ 27 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 27 ] [SEP] B-Application [SEP] HTSeq"
19,55,B-Application [SEP] HTSeq,B-Version [SEP] 2,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] HTSeq [SEP] B-Version [SEP] 2","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] HTSeq"
19,54,B-Application [SEP] HTSeq,B-Application [SEP] DESeq,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] HTSeq [SEP] B-Application [SEP] DESeq","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] DESeq [SEP] B-Application [SEP] HTSeq"
19,41,B-Application [SEP] HTSeq,B-Citation [SEP] [ 26 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] HTSeq [SEP] B-Citation [SEP] [ 26 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 26 ] [SEP] B-Application [SEP] HTSeq"
19,40,B-Application [SEP] HTSeq,B-Application [SEP] MAnorm,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] HTSeq [SEP] B-Application [SEP] MAnorm","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] MAnorm [SEP] B-Application [SEP] HTSeq"
19,30,B-Application [SEP] HTSeq,B-Citation [SEP] [ 25 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] HTSeq [SEP] B-Citation [SEP] [ 25 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Application [SEP] HTSeq"
19,8,B-Application [SEP] HTSeq,B-Version [SEP] 2,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] HTSeq [SEP] B-Version [SEP] 2","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] HTSeq"
19,28,B-Application [SEP] HTSeq,B-Application [SEP] epic,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] HTSeq [SEP] B-Application [SEP] epic","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] epic [SEP] B-Application [SEP] HTSeq"
19,20,B-Application [SEP] HTSeq,B-Citation [SEP] [ 24 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] HTSeq [SEP] B-Citation [SEP] [ 24 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 24 ] [SEP] B-Application [SEP] HTSeq"
19,9,B-Application [SEP] HTSeq,B-Citation [SEP] [ 23 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] HTSeq [SEP] B-Citation [SEP] [ 23 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 23 ] [SEP] B-Application [SEP] HTSeq"
19,7,B-Application [SEP] HTSeq,B-Application [SEP] Bowtie,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] HTSeq [SEP] B-Application [SEP] Bowtie","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] Bowtie [SEP] B-Application [SEP] HTSeq"
19,29,B-Application [SEP] HTSeq,B-Version [SEP] 2,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] HTSeq [SEP] B-Version [SEP] 2","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] HTSeq"
9,56,B-Citation [SEP] [ 23 ],B-Citation [SEP] [ 27 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 23 ] [SEP] B-Citation [SEP] [ 27 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 27 ] [SEP] B-Citation [SEP] [ 23 ]"
9,55,B-Citation [SEP] [ 23 ],B-Version [SEP] 2,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 23 ] [SEP] B-Version [SEP] 2","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 23 ]"
9,54,B-Citation [SEP] [ 23 ],B-Application [SEP] DESeq,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 23 ] [SEP] B-Application [SEP] DESeq","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] DESeq [SEP] B-Citation [SEP] [ 23 ]"
9,41,B-Citation [SEP] [ 23 ],B-Citation [SEP] [ 26 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 23 ] [SEP] B-Citation [SEP] [ 26 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 26 ] [SEP] B-Citation [SEP] [ 23 ]"
9,40,B-Citation [SEP] [ 23 ],B-Application [SEP] MAnorm,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 23 ] [SEP] B-Application [SEP] MAnorm","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] MAnorm [SEP] B-Citation [SEP] [ 23 ]"
9,30,B-Citation [SEP] [ 23 ],B-Citation [SEP] [ 25 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 23 ] [SEP] B-Citation [SEP] [ 25 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Citation [SEP] [ 23 ]"
9,8,B-Citation [SEP] [ 23 ],B-Version [SEP] 2,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 23 ] [SEP] B-Version [SEP] 2","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 23 ]"
9,28,B-Citation [SEP] [ 23 ],B-Application [SEP] epic,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 23 ] [SEP] B-Application [SEP] epic","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] epic [SEP] B-Citation [SEP] [ 23 ]"
9,20,B-Citation [SEP] [ 23 ],B-Citation [SEP] [ 24 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 23 ] [SEP] B-Citation [SEP] [ 24 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 24 ] [SEP] B-Citation [SEP] [ 23 ]"
9,19,B-Citation [SEP] [ 23 ],B-Application [SEP] HTSeq,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 23 ] [SEP] B-Application [SEP] HTSeq","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] HTSeq [SEP] B-Citation [SEP] [ 23 ]"
9,7,B-Citation [SEP] [ 23 ],B-Application [SEP] Bowtie,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 23 ] [SEP] B-Application [SEP] Bowtie","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] Bowtie [SEP] B-Citation [SEP] [ 23 ]"
9,29,B-Citation [SEP] [ 23 ],B-Version [SEP] 2,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 23 ] [SEP] B-Version [SEP] 2","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 23 ]"
7,56,B-Application [SEP] Bowtie,B-Citation [SEP] [ 27 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] Bowtie [SEP] B-Citation [SEP] [ 27 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 27 ] [SEP] B-Application [SEP] Bowtie"
7,55,B-Application [SEP] Bowtie,B-Version [SEP] 2,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] Bowtie [SEP] B-Version [SEP] 2","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] Bowtie"
7,54,B-Application [SEP] Bowtie,B-Application [SEP] DESeq,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] Bowtie [SEP] B-Application [SEP] DESeq","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] DESeq [SEP] B-Application [SEP] Bowtie"
7,41,B-Application [SEP] Bowtie,B-Citation [SEP] [ 26 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] Bowtie [SEP] B-Citation [SEP] [ 26 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 26 ] [SEP] B-Application [SEP] Bowtie"
7,40,B-Application [SEP] Bowtie,B-Application [SEP] MAnorm,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] Bowtie [SEP] B-Application [SEP] MAnorm","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] MAnorm [SEP] B-Application [SEP] Bowtie"
7,30,B-Application [SEP] Bowtie,B-Citation [SEP] [ 25 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] Bowtie [SEP] B-Citation [SEP] [ 25 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Application [SEP] Bowtie"
7,8,B-Application [SEP] Bowtie,B-Version [SEP] 2,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] Bowtie [SEP] B-Version [SEP] 2","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] Bowtie"
7,28,B-Application [SEP] Bowtie,B-Application [SEP] epic,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] Bowtie [SEP] B-Application [SEP] epic","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] epic [SEP] B-Application [SEP] Bowtie"
7,20,B-Application [SEP] Bowtie,B-Citation [SEP] [ 24 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] Bowtie [SEP] B-Citation [SEP] [ 24 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 24 ] [SEP] B-Application [SEP] Bowtie"
7,19,B-Application [SEP] Bowtie,B-Application [SEP] HTSeq,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] Bowtie [SEP] B-Application [SEP] HTSeq","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] HTSeq [SEP] B-Application [SEP] Bowtie"
7,9,B-Application [SEP] Bowtie,B-Citation [SEP] [ 23 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] Bowtie [SEP] B-Citation [SEP] [ 23 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 23 ] [SEP] B-Application [SEP] Bowtie"
7,29,B-Application [SEP] Bowtie,B-Version [SEP] 2,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] Bowtie [SEP] B-Version [SEP] 2","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] Bowtie"
29,56,B-Version [SEP] 2,B-Citation [SEP] [ 27 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 27 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 27 ] [SEP] B-Version [SEP] 2"
29,54,B-Version [SEP] 2,B-Application [SEP] DESeq,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] DESeq","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] DESeq [SEP] B-Version [SEP] 2"
29,41,B-Version [SEP] 2,B-Citation [SEP] [ 26 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 26 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 26 ] [SEP] B-Version [SEP] 2"
29,40,B-Version [SEP] 2,B-Application [SEP] MAnorm,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] MAnorm","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] MAnorm [SEP] B-Version [SEP] 2"
29,30,B-Version [SEP] 2,B-Citation [SEP] [ 25 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 25 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Version [SEP] 2"
29,28,B-Version [SEP] 2,B-Application [SEP] epic,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] epic","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] epic [SEP] B-Version [SEP] 2"
29,20,B-Version [SEP] 2,B-Citation [SEP] [ 24 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 24 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 24 ] [SEP] B-Version [SEP] 2"
29,19,B-Version [SEP] 2,B-Application [SEP] HTSeq,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] HTSeq","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] HTSeq [SEP] B-Version [SEP] 2"
29,9,B-Version [SEP] 2,B-Citation [SEP] [ 23 ],124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 23 ]","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Citation [SEP] [ 23 ] [SEP] B-Version [SEP] 2"
29,7,B-Version [SEP] 2,B-Application [SEP] Bowtie,124,"We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis .","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] Bowtie","We used well - established tools including Bowtie 2 [ 23 ] for short - read sequence alignment , HTSeq [ 24 ] for feature mapping quantification , epic 2 [ 25 ] for ChIP - seq peak calling , MAnorm [ 26 ] for quantitative comparison of ChIP - seq data , and DESeq 2 [ 27 ] for differential gene expression analysis . [SEP] B-Application [SEP] Bowtie [SEP] B-Version [SEP] 2"
25,20,B-Version [SEP] 2,B-Citation [SEP] [ 28 ],125,"Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method .","Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 28 ]","Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method . [SEP] B-Citation [SEP] [ 28 ] [SEP] B-Version [SEP] 2"
25,24,B-Version [SEP] 2,B-Application [SEP] Bowtie,125,"Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method .","Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] Bowtie","Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method . [SEP] B-Application [SEP] Bowtie [SEP] B-Version [SEP] 2"
25,18,B-Version [SEP] 2,B-Abbreviation [SEP] BWA,125,"Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method .","Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method . [SEP] B-Version [SEP] 2 [SEP] B-Abbreviation [SEP] BWA","Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method . [SEP] B-Abbreviation [SEP] BWA [SEP] B-Version [SEP] 2"
25,13,B-Version [SEP] 2,B-Application [SEP] Burrows - Wheeler Aligner,125,"Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method .","Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] Burrows - Wheeler Aligner","Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method . [SEP] B-Application [SEP] Burrows - Wheeler Aligner [SEP] B-Version [SEP] 2"
20,25,B-Citation [SEP] [ 28 ],B-Version [SEP] 2,125,"Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method .","Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method . [SEP] B-Citation [SEP] [ 28 ] [SEP] B-Version [SEP] 2","Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 28 ]"
20,24,B-Citation [SEP] [ 28 ],B-Application [SEP] Bowtie,125,"Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method .","Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method . [SEP] B-Citation [SEP] [ 28 ] [SEP] B-Application [SEP] Bowtie","Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method . [SEP] B-Application [SEP] Bowtie [SEP] B-Citation [SEP] [ 28 ]"
20,18,B-Citation [SEP] [ 28 ],B-Abbreviation [SEP] BWA,125,"Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method .","Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method . [SEP] B-Citation [SEP] [ 28 ] [SEP] B-Abbreviation [SEP] BWA","Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method . [SEP] B-Abbreviation [SEP] BWA [SEP] B-Citation [SEP] [ 28 ]"
20,13,B-Citation [SEP] [ 28 ],B-Application [SEP] Burrows - Wheeler Aligner,125,"Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method .","Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method . [SEP] B-Citation [SEP] [ 28 ] [SEP] B-Application [SEP] Burrows - Wheeler Aligner","Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method . [SEP] B-Application [SEP] Burrows - Wheeler Aligner [SEP] B-Citation [SEP] [ 28 ]"
24,25,B-Application [SEP] Bowtie,B-Version [SEP] 2,125,"Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method .","Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method . [SEP] B-Application [SEP] Bowtie [SEP] B-Version [SEP] 2","Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] Bowtie"
24,20,B-Application [SEP] Bowtie,B-Citation [SEP] [ 28 ],125,"Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method .","Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method . [SEP] B-Application [SEP] Bowtie [SEP] B-Citation [SEP] [ 28 ]","Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method . [SEP] B-Citation [SEP] [ 28 ] [SEP] B-Application [SEP] Bowtie"
24,18,B-Application [SEP] Bowtie,B-Abbreviation [SEP] BWA,125,"Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method .","Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method . [SEP] B-Application [SEP] Bowtie [SEP] B-Abbreviation [SEP] BWA","Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method . [SEP] B-Abbreviation [SEP] BWA [SEP] B-Application [SEP] Bowtie"
24,13,B-Application [SEP] Bowtie,B-Application [SEP] Burrows - Wheeler Aligner,125,"Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method .","Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method . [SEP] B-Application [SEP] Bowtie [SEP] B-Application [SEP] Burrows - Wheeler Aligner","Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method . [SEP] B-Application [SEP] Burrows - Wheeler Aligner [SEP] B-Application [SEP] Bowtie"
18,25,B-Abbreviation [SEP] BWA,B-Version [SEP] 2,125,"Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method .","Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method . [SEP] B-Abbreviation [SEP] BWA [SEP] B-Version [SEP] 2","Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method . [SEP] B-Version [SEP] 2 [SEP] B-Abbreviation [SEP] BWA"
18,20,B-Abbreviation [SEP] BWA,B-Citation [SEP] [ 28 ],125,"Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method .","Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method . [SEP] B-Abbreviation [SEP] BWA [SEP] B-Citation [SEP] [ 28 ]","Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method . [SEP] B-Citation [SEP] [ 28 ] [SEP] B-Abbreviation [SEP] BWA"
18,24,B-Abbreviation [SEP] BWA,B-Application [SEP] Bowtie,125,"Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method .","Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method . [SEP] B-Abbreviation [SEP] BWA [SEP] B-Application [SEP] Bowtie","Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method . [SEP] B-Application [SEP] Bowtie [SEP] B-Abbreviation [SEP] BWA"
18,13,B-Abbreviation [SEP] BWA,B-Application [SEP] Burrows - Wheeler Aligner,125,"Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method .","Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method . [SEP] B-Abbreviation [SEP] BWA [SEP] B-Application [SEP] Burrows - Wheeler Aligner","Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method . [SEP] B-Application [SEP] Burrows - Wheeler Aligner [SEP] B-Abbreviation [SEP] BWA"
13,25,B-Application [SEP] Burrows - Wheeler Aligner,B-Version [SEP] 2,125,"Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method .","Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method . [SEP] B-Application [SEP] Burrows - Wheeler Aligner [SEP] B-Version [SEP] 2","Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] Burrows - Wheeler Aligner"
13,20,B-Application [SEP] Burrows - Wheeler Aligner,B-Citation [SEP] [ 28 ],125,"Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method .","Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method . [SEP] B-Application [SEP] Burrows - Wheeler Aligner [SEP] B-Citation [SEP] [ 28 ]","Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method . [SEP] B-Citation [SEP] [ 28 ] [SEP] B-Application [SEP] Burrows - Wheeler Aligner"
13,24,B-Application [SEP] Burrows - Wheeler Aligner,B-Application [SEP] Bowtie,125,"Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method .","Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method . [SEP] B-Application [SEP] Burrows - Wheeler Aligner [SEP] B-Application [SEP] Bowtie","Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method . [SEP] B-Application [SEP] Bowtie [SEP] B-Application [SEP] Burrows - Wheeler Aligner"
13,18,B-Application [SEP] Burrows - Wheeler Aligner,B-Abbreviation [SEP] BWA,125,"Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method .","Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method . [SEP] B-Application [SEP] Burrows - Wheeler Aligner [SEP] B-Abbreviation [SEP] BWA","Two of the most commonly used aligners for ChIP - seq analysis are Burrows - Wheeler Aligner ( BWA ) [ 28 ] and Bowtie 2 , which carry out fast mapping of DNA sequences using the Burrows - Wheeler transform method . [SEP] B-Abbreviation [SEP] BWA [SEP] B-Application [SEP] Burrows - Wheeler Aligner"
24,28,B-Application [SEP] Integrative Genomics Viewer,B-Abbreviation [SEP] IGV,127,"After mapping , duplicated reads were removed and ChIP - seq signal distribution over B . rapa genome was visualized and inspected using the Integrative Genomics Viewer ( IGV ) [ 29 ] .","After mapping , duplicated reads were removed and ChIP - seq signal distribution over B . rapa genome was visualized and inspected using the Integrative Genomics Viewer ( IGV ) [ 29 ] . [SEP] B-Application [SEP] Integrative Genomics Viewer [SEP] B-Abbreviation [SEP] IGV","After mapping , duplicated reads were removed and ChIP - seq signal distribution over B . rapa genome was visualized and inspected using the Integrative Genomics Viewer ( IGV ) [ 29 ] . [SEP] B-Abbreviation [SEP] IGV [SEP] B-Application [SEP] Integrative Genomics Viewer"
24,30,B-Application [SEP] Integrative Genomics Viewer,B-Citation [SEP] [ 29 ],127,"After mapping , duplicated reads were removed and ChIP - seq signal distribution over B . rapa genome was visualized and inspected using the Integrative Genomics Viewer ( IGV ) [ 29 ] .","After mapping , duplicated reads were removed and ChIP - seq signal distribution over B . rapa genome was visualized and inspected using the Integrative Genomics Viewer ( IGV ) [ 29 ] . [SEP] B-Application [SEP] Integrative Genomics Viewer [SEP] B-Citation [SEP] [ 29 ]","After mapping , duplicated reads were removed and ChIP - seq signal distribution over B . rapa genome was visualized and inspected using the Integrative Genomics Viewer ( IGV ) [ 29 ] . [SEP] B-Citation [SEP] [ 29 ] [SEP] B-Application [SEP] Integrative Genomics Viewer"
28,24,B-Abbreviation [SEP] IGV,B-Application [SEP] Integrative Genomics Viewer,127,"After mapping , duplicated reads were removed and ChIP - seq signal distribution over B . rapa genome was visualized and inspected using the Integrative Genomics Viewer ( IGV ) [ 29 ] .","After mapping , duplicated reads were removed and ChIP - seq signal distribution over B . rapa genome was visualized and inspected using the Integrative Genomics Viewer ( IGV ) [ 29 ] . [SEP] B-Abbreviation [SEP] IGV [SEP] B-Application [SEP] Integrative Genomics Viewer","After mapping , duplicated reads were removed and ChIP - seq signal distribution over B . rapa genome was visualized and inspected using the Integrative Genomics Viewer ( IGV ) [ 29 ] . [SEP] B-Application [SEP] Integrative Genomics Viewer [SEP] B-Abbreviation [SEP] IGV"
28,30,B-Abbreviation [SEP] IGV,B-Citation [SEP] [ 29 ],127,"After mapping , duplicated reads were removed and ChIP - seq signal distribution over B . rapa genome was visualized and inspected using the Integrative Genomics Viewer ( IGV ) [ 29 ] .","After mapping , duplicated reads were removed and ChIP - seq signal distribution over B . rapa genome was visualized and inspected using the Integrative Genomics Viewer ( IGV ) [ 29 ] . [SEP] B-Abbreviation [SEP] IGV [SEP] B-Citation [SEP] [ 29 ]","After mapping , duplicated reads were removed and ChIP - seq signal distribution over B . rapa genome was visualized and inspected using the Integrative Genomics Viewer ( IGV ) [ 29 ] . [SEP] B-Citation [SEP] [ 29 ] [SEP] B-Abbreviation [SEP] IGV"
30,24,B-Citation [SEP] [ 29 ],B-Application [SEP] Integrative Genomics Viewer,127,"After mapping , duplicated reads were removed and ChIP - seq signal distribution over B . rapa genome was visualized and inspected using the Integrative Genomics Viewer ( IGV ) [ 29 ] .","After mapping , duplicated reads were removed and ChIP - seq signal distribution over B . rapa genome was visualized and inspected using the Integrative Genomics Viewer ( IGV ) [ 29 ] . [SEP] B-Citation [SEP] [ 29 ] [SEP] B-Application [SEP] Integrative Genomics Viewer","After mapping , duplicated reads were removed and ChIP - seq signal distribution over B . rapa genome was visualized and inspected using the Integrative Genomics Viewer ( IGV ) [ 29 ] . [SEP] B-Application [SEP] Integrative Genomics Viewer [SEP] B-Citation [SEP] [ 29 ]"
30,28,B-Citation [SEP] [ 29 ],B-Abbreviation [SEP] IGV,127,"After mapping , duplicated reads were removed and ChIP - seq signal distribution over B . rapa genome was visualized and inspected using the Integrative Genomics Viewer ( IGV ) [ 29 ] .","After mapping , duplicated reads were removed and ChIP - seq signal distribution over B . rapa genome was visualized and inspected using the Integrative Genomics Viewer ( IGV ) [ 29 ] . [SEP] B-Citation [SEP] [ 29 ] [SEP] B-Abbreviation [SEP] IGV","After mapping , duplicated reads were removed and ChIP - seq signal distribution over B . rapa genome was visualized and inspected using the Integrative Genomics Viewer ( IGV ) [ 29 ] . [SEP] B-Abbreviation [SEP] IGV [SEP] B-Citation [SEP] [ 29 ]"
12,13,B-Application [SEP] MACS,B-Version [SEP] 2,128,"We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation .","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Application [SEP] MACS [SEP] B-Version [SEP] 2","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] MACS"
12,14,B-Application [SEP] MACS,B-Citation [SEP] [ 30 ],128,"We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation .","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Application [SEP] MACS [SEP] B-Citation [SEP] [ 30 ]","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Citation [SEP] [ 30 ] [SEP] B-Application [SEP] MACS"
12,41,B-Application [SEP] MACS,B-Application [SEP] epic,128,"We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation .","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Application [SEP] MACS [SEP] B-Application [SEP] epic","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Application [SEP] epic [SEP] B-Application [SEP] MACS"
12,42,B-Application [SEP] MACS,B-Version [SEP] 2,128,"We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation .","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Application [SEP] MACS [SEP] B-Version [SEP] 2","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] MACS"
12,49,B-Application [SEP] MACS,B-Application [SEP] SICER,128,"We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation .","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Application [SEP] MACS [SEP] B-Application [SEP] SICER","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Application [SEP] SICER [SEP] B-Application [SEP] MACS"
12,50,B-Application [SEP] MACS,B-Citation [SEP] [ 31 ],128,"We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation .","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Application [SEP] MACS [SEP] B-Citation [SEP] [ 31 ]","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Citation [SEP] [ 31 ] [SEP] B-Application [SEP] MACS"
13,12,B-Version [SEP] 2,B-Application [SEP] MACS,128,"We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation .","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] MACS","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Application [SEP] MACS [SEP] B-Version [SEP] 2"
13,14,B-Version [SEP] 2,B-Citation [SEP] [ 30 ],128,"We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation .","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 30 ]","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Citation [SEP] [ 30 ] [SEP] B-Version [SEP] 2"
13,41,B-Version [SEP] 2,B-Application [SEP] epic,128,"We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation .","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] epic","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Application [SEP] epic [SEP] B-Version [SEP] 2"
13,49,B-Version [SEP] 2,B-Application [SEP] SICER,128,"We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation .","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] SICER","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Application [SEP] SICER [SEP] B-Version [SEP] 2"
13,50,B-Version [SEP] 2,B-Citation [SEP] [ 31 ],128,"We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation .","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 31 ]","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Citation [SEP] [ 31 ] [SEP] B-Version [SEP] 2"
14,12,B-Citation [SEP] [ 30 ],B-Application [SEP] MACS,128,"We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation .","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Citation [SEP] [ 30 ] [SEP] B-Application [SEP] MACS","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Application [SEP] MACS [SEP] B-Citation [SEP] [ 30 ]"
14,13,B-Citation [SEP] [ 30 ],B-Version [SEP] 2,128,"We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation .","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Citation [SEP] [ 30 ] [SEP] B-Version [SEP] 2","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 30 ]"
14,41,B-Citation [SEP] [ 30 ],B-Application [SEP] epic,128,"We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation .","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Citation [SEP] [ 30 ] [SEP] B-Application [SEP] epic","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Application [SEP] epic [SEP] B-Citation [SEP] [ 30 ]"
14,42,B-Citation [SEP] [ 30 ],B-Version [SEP] 2,128,"We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation .","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Citation [SEP] [ 30 ] [SEP] B-Version [SEP] 2","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 30 ]"
14,49,B-Citation [SEP] [ 30 ],B-Application [SEP] SICER,128,"We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation .","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Citation [SEP] [ 30 ] [SEP] B-Application [SEP] SICER","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Application [SEP] SICER [SEP] B-Citation [SEP] [ 30 ]"
14,50,B-Citation [SEP] [ 30 ],B-Citation [SEP] [ 31 ],128,"We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation .","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Citation [SEP] [ 30 ] [SEP] B-Citation [SEP] [ 31 ]","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Citation [SEP] [ 31 ] [SEP] B-Citation [SEP] [ 30 ]"
41,12,B-Application [SEP] epic,B-Application [SEP] MACS,128,"We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation .","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Application [SEP] epic [SEP] B-Application [SEP] MACS","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Application [SEP] MACS [SEP] B-Application [SEP] epic"
41,13,B-Application [SEP] epic,B-Version [SEP] 2,128,"We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation .","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Application [SEP] epic [SEP] B-Version [SEP] 2","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] epic"
41,14,B-Application [SEP] epic,B-Citation [SEP] [ 30 ],128,"We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation .","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Application [SEP] epic [SEP] B-Citation [SEP] [ 30 ]","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Citation [SEP] [ 30 ] [SEP] B-Application [SEP] epic"
41,42,B-Application [SEP] epic,B-Version [SEP] 2,128,"We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation .","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Application [SEP] epic [SEP] B-Version [SEP] 2","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] epic"
41,49,B-Application [SEP] epic,B-Application [SEP] SICER,128,"We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation .","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Application [SEP] epic [SEP] B-Application [SEP] SICER","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Application [SEP] SICER [SEP] B-Application [SEP] epic"
41,50,B-Application [SEP] epic,B-Citation [SEP] [ 31 ],128,"We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation .","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Application [SEP] epic [SEP] B-Citation [SEP] [ 31 ]","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Citation [SEP] [ 31 ] [SEP] B-Application [SEP] epic"
42,12,B-Version [SEP] 2,B-Application [SEP] MACS,128,"We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation .","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] MACS","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Application [SEP] MACS [SEP] B-Version [SEP] 2"
42,14,B-Version [SEP] 2,B-Citation [SEP] [ 30 ],128,"We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation .","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 30 ]","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Citation [SEP] [ 30 ] [SEP] B-Version [SEP] 2"
42,41,B-Version [SEP] 2,B-Application [SEP] epic,128,"We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation .","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] epic","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Application [SEP] epic [SEP] B-Version [SEP] 2"
42,49,B-Version [SEP] 2,B-Application [SEP] SICER,128,"We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation .","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] SICER","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Application [SEP] SICER [SEP] B-Version [SEP] 2"
42,50,B-Version [SEP] 2,B-Citation [SEP] [ 31 ],128,"We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation .","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 31 ]","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Citation [SEP] [ 31 ] [SEP] B-Version [SEP] 2"
49,12,B-Application [SEP] SICER,B-Application [SEP] MACS,128,"We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation .","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Application [SEP] SICER [SEP] B-Application [SEP] MACS","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Application [SEP] MACS [SEP] B-Application [SEP] SICER"
49,13,B-Application [SEP] SICER,B-Version [SEP] 2,128,"We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation .","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Application [SEP] SICER [SEP] B-Version [SEP] 2","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] SICER"
49,14,B-Application [SEP] SICER,B-Citation [SEP] [ 30 ],128,"We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation .","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Application [SEP] SICER [SEP] B-Citation [SEP] [ 30 ]","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Citation [SEP] [ 30 ] [SEP] B-Application [SEP] SICER"
49,41,B-Application [SEP] SICER,B-Application [SEP] epic,128,"We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation .","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Application [SEP] SICER [SEP] B-Application [SEP] epic","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Application [SEP] epic [SEP] B-Application [SEP] SICER"
49,42,B-Application [SEP] SICER,B-Version [SEP] 2,128,"We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation .","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Application [SEP] SICER [SEP] B-Version [SEP] 2","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] SICER"
49,50,B-Application [SEP] SICER,B-Citation [SEP] [ 31 ],128,"We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation .","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Application [SEP] SICER [SEP] B-Citation [SEP] [ 31 ]","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Citation [SEP] [ 31 ] [SEP] B-Application [SEP] SICER"
50,12,B-Citation [SEP] [ 31 ],B-Application [SEP] MACS,128,"We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation .","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Citation [SEP] [ 31 ] [SEP] B-Application [SEP] MACS","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Application [SEP] MACS [SEP] B-Citation [SEP] [ 31 ]"
50,13,B-Citation [SEP] [ 31 ],B-Version [SEP] 2,128,"We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation .","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Citation [SEP] [ 31 ] [SEP] B-Version [SEP] 2","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 31 ]"
50,14,B-Citation [SEP] [ 31 ],B-Citation [SEP] [ 30 ],128,"We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation .","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Citation [SEP] [ 31 ] [SEP] B-Citation [SEP] [ 30 ]","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Citation [SEP] [ 30 ] [SEP] B-Citation [SEP] [ 31 ]"
50,41,B-Citation [SEP] [ 31 ],B-Application [SEP] epic,128,"We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation .","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Citation [SEP] [ 31 ] [SEP] B-Application [SEP] epic","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Application [SEP] epic [SEP] B-Citation [SEP] [ 31 ]"
50,42,B-Citation [SEP] [ 31 ],B-Version [SEP] 2,128,"We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation .","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Citation [SEP] [ 31 ] [SEP] B-Version [SEP] 2","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Version [SEP] 2 [SEP] B-Citation [SEP] [ 31 ]"
50,49,B-Citation [SEP] [ 31 ],B-Application [SEP] SICER,128,"We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation .","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Citation [SEP] [ 31 ] [SEP] B-Application [SEP] SICER","We compared 2 widely used but different peak - calling algorithms : MACS 2 [ 30 ] , an algorithm initially designed to identify sharp peaks but extended to detect broad peaks such as those arising from this analysis ; and epic 2 , a highly performant implementation of SICER [ 31 ] , an algorithm designed for noisy and diffuse ChIP - seq data such as histone methylation . [SEP] B-Application [SEP] SICER [SEP] B-Citation [SEP] [ 31 ]"
23,22,B-Citation [SEP] [ 33 ],B-Application [SEP] agriGO,129,These gene lists were used as input for singular enrichment analysis ( SEA ) of Gene Ontology ( GO ) terms using agriGO [ 33 ] .,These gene lists were used as input for singular enrichment analysis ( SEA ) of Gene Ontology ( GO ) terms using agriGO [ 33 ] . [SEP] B-Citation [SEP] [ 33 ] [SEP] B-Application [SEP] agriGO,These gene lists were used as input for singular enrichment analysis ( SEA ) of Gene Ontology ( GO ) terms using agriGO [ 33 ] . [SEP] B-Application [SEP] agriGO [SEP] B-Citation [SEP] [ 33 ]
22,23,B-Application [SEP] agriGO,B-Citation [SEP] [ 33 ],129,These gene lists were used as input for singular enrichment analysis ( SEA ) of Gene Ontology ( GO ) terms using agriGO [ 33 ] .,These gene lists were used as input for singular enrichment analysis ( SEA ) of Gene Ontology ( GO ) terms using agriGO [ 33 ] . [SEP] B-Application [SEP] agriGO [SEP] B-Citation [SEP] [ 33 ],These gene lists were used as input for singular enrichment analysis ( SEA ) of Gene Ontology ( GO ) terms using agriGO [ 33 ] . [SEP] B-Citation [SEP] [ 33 ] [SEP] B-Application [SEP] agriGO
12,13,B-Application [SEP] REVIGO,B-Citation [SEP] [ 34 ],130,The resulting GO term list was summarized and reduced in complexity using REVIGO [ 34 ] .,The resulting GO term list was summarized and reduced in complexity using REVIGO [ 34 ] . [SEP] B-Application [SEP] REVIGO [SEP] B-Citation [SEP] [ 34 ],The resulting GO term list was summarized and reduced in complexity using REVIGO [ 34 ] . [SEP] B-Citation [SEP] [ 34 ] [SEP] B-Application [SEP] REVIGO
13,12,B-Citation [SEP] [ 34 ],B-Application [SEP] REVIGO,130,The resulting GO term list was summarized and reduced in complexity using REVIGO [ 34 ] .,The resulting GO term list was summarized and reduced in complexity using REVIGO [ 34 ] . [SEP] B-Citation [SEP] [ 34 ] [SEP] B-Application [SEP] REVIGO,The resulting GO term list was summarized and reduced in complexity using REVIGO [ 34 ] . [SEP] B-Application [SEP] REVIGO [SEP] B-Citation [SEP] [ 34 ]
21,24,B-Application [SEP] Galaxy,B-ProgrammingEnvironment [SEP] Jupyter,131,"The pipeline was constructed using a set of well - established genomic tools and approaches , using a combination of a Galaxy environment and Jupyter notebooks [ 20 ] .","The pipeline was constructed using a set of well - established genomic tools and approaches , using a combination of a Galaxy environment and Jupyter notebooks [ 20 ] . [SEP] B-Application [SEP] Galaxy [SEP] B-ProgrammingEnvironment [SEP] Jupyter","The pipeline was constructed using a set of well - established genomic tools and approaches , using a combination of a Galaxy environment and Jupyter notebooks [ 20 ] . [SEP] B-ProgrammingEnvironment [SEP] Jupyter [SEP] B-Application [SEP] Galaxy"
21,26,B-Application [SEP] Galaxy,B-Citation [SEP] [ 20 ],131,"The pipeline was constructed using a set of well - established genomic tools and approaches , using a combination of a Galaxy environment and Jupyter notebooks [ 20 ] .","The pipeline was constructed using a set of well - established genomic tools and approaches , using a combination of a Galaxy environment and Jupyter notebooks [ 20 ] . [SEP] B-Application [SEP] Galaxy [SEP] B-Citation [SEP] [ 20 ]","The pipeline was constructed using a set of well - established genomic tools and approaches , using a combination of a Galaxy environment and Jupyter notebooks [ 20 ] . [SEP] B-Citation [SEP] [ 20 ] [SEP] B-Application [SEP] Galaxy"
24,21,B-ProgrammingEnvironment [SEP] Jupyter,B-Application [SEP] Galaxy,131,"The pipeline was constructed using a set of well - established genomic tools and approaches , using a combination of a Galaxy environment and Jupyter notebooks [ 20 ] .","The pipeline was constructed using a set of well - established genomic tools and approaches , using a combination of a Galaxy environment and Jupyter notebooks [ 20 ] . [SEP] B-ProgrammingEnvironment [SEP] Jupyter [SEP] B-Application [SEP] Galaxy","The pipeline was constructed using a set of well - established genomic tools and approaches , using a combination of a Galaxy environment and Jupyter notebooks [ 20 ] . [SEP] B-Application [SEP] Galaxy [SEP] B-ProgrammingEnvironment [SEP] Jupyter"
24,26,B-ProgrammingEnvironment [SEP] Jupyter,B-Citation [SEP] [ 20 ],131,"The pipeline was constructed using a set of well - established genomic tools and approaches , using a combination of a Galaxy environment and Jupyter notebooks [ 20 ] .","The pipeline was constructed using a set of well - established genomic tools and approaches , using a combination of a Galaxy environment and Jupyter notebooks [ 20 ] . [SEP] B-ProgrammingEnvironment [SEP] Jupyter [SEP] B-Citation [SEP] [ 20 ]","The pipeline was constructed using a set of well - established genomic tools and approaches , using a combination of a Galaxy environment and Jupyter notebooks [ 20 ] . [SEP] B-Citation [SEP] [ 20 ] [SEP] B-ProgrammingEnvironment [SEP] Jupyter"
26,21,B-Citation [SEP] [ 20 ],B-Application [SEP] Galaxy,131,"The pipeline was constructed using a set of well - established genomic tools and approaches , using a combination of a Galaxy environment and Jupyter notebooks [ 20 ] .","The pipeline was constructed using a set of well - established genomic tools and approaches , using a combination of a Galaxy environment and Jupyter notebooks [ 20 ] . [SEP] B-Citation [SEP] [ 20 ] [SEP] B-Application [SEP] Galaxy","The pipeline was constructed using a set of well - established genomic tools and approaches , using a combination of a Galaxy environment and Jupyter notebooks [ 20 ] . [SEP] B-Application [SEP] Galaxy [SEP] B-Citation [SEP] [ 20 ]"
26,24,B-Citation [SEP] [ 20 ],B-ProgrammingEnvironment [SEP] Jupyter,131,"The pipeline was constructed using a set of well - established genomic tools and approaches , using a combination of a Galaxy environment and Jupyter notebooks [ 20 ] .","The pipeline was constructed using a set of well - established genomic tools and approaches , using a combination of a Galaxy environment and Jupyter notebooks [ 20 ] . [SEP] B-Citation [SEP] [ 20 ] [SEP] B-ProgrammingEnvironment [SEP] Jupyter","The pipeline was constructed using a set of well - established genomic tools and approaches , using a combination of a Galaxy environment and Jupyter notebooks [ 20 ] . [SEP] B-ProgrammingEnvironment [SEP] Jupyter [SEP] B-Citation [SEP] [ 20 ]"
0,4,B-PlugIn [SEP] Jupyter Lab,B-ProgrammingEnvironment [SEP] R,132,"Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) .","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-PlugIn [SEP] Jupyter Lab [SEP] B-ProgrammingEnvironment [SEP] R","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-PlugIn [SEP] Jupyter Lab"
0,6,B-PlugIn [SEP] Jupyter Lab,B-PlugIn [SEP] bash,132,"Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) .","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-PlugIn [SEP] Jupyter Lab [SEP] B-PlugIn [SEP] bash","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-PlugIn [SEP] bash [SEP] B-PlugIn [SEP] Jupyter Lab"
0,11,B-PlugIn [SEP] Jupyter Lab,B-Application [SEP] Anaconda,132,"Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) .","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-PlugIn [SEP] Jupyter Lab [SEP] B-Application [SEP] Anaconda","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Application [SEP] Anaconda [SEP] B-PlugIn [SEP] Jupyter Lab"
0,12,B-PlugIn [SEP] Jupyter Lab,B-Version [SEP] 3,132,"Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) .","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-PlugIn [SEP] Jupyter Lab [SEP] B-Version [SEP] 3","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Version [SEP] 3 [SEP] B-PlugIn [SEP] Jupyter Lab"
0,14,B-PlugIn [SEP] Jupyter Lab,B-Developer [SEP] Anaconda Software Distribution,132,"Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) .","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-PlugIn [SEP] Jupyter Lab [SEP] B-Developer [SEP] Anaconda Software Distribution","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Developer [SEP] Anaconda Software Distribution [SEP] B-PlugIn [SEP] Jupyter Lab"
0,18,B-PlugIn [SEP] Jupyter Lab,B-Release [SEP] 2018,132,"Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) .","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-PlugIn [SEP] Jupyter Lab [SEP] B-Release [SEP] 2018","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Release [SEP] 2018 [SEP] B-PlugIn [SEP] Jupyter Lab"
4,0,B-ProgrammingEnvironment [SEP] R,B-PlugIn [SEP] Jupyter Lab,132,"Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) .","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-PlugIn [SEP] Jupyter Lab","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-PlugIn [SEP] Jupyter Lab [SEP] B-ProgrammingEnvironment [SEP] R"
4,6,B-ProgrammingEnvironment [SEP] R,B-PlugIn [SEP] bash,132,"Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) .","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-PlugIn [SEP] bash","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-PlugIn [SEP] bash [SEP] B-ProgrammingEnvironment [SEP] R"
4,11,B-ProgrammingEnvironment [SEP] R,B-Application [SEP] Anaconda,132,"Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) .","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Application [SEP] Anaconda","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Application [SEP] Anaconda [SEP] B-ProgrammingEnvironment [SEP] R"
4,12,B-ProgrammingEnvironment [SEP] R,B-Version [SEP] 3,132,"Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) .","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Version [SEP] 3","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Version [SEP] 3 [SEP] B-ProgrammingEnvironment [SEP] R"
4,14,B-ProgrammingEnvironment [SEP] R,B-Developer [SEP] Anaconda Software Distribution,132,"Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) .","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Developer [SEP] Anaconda Software Distribution","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Developer [SEP] Anaconda Software Distribution [SEP] B-ProgrammingEnvironment [SEP] R"
4,18,B-ProgrammingEnvironment [SEP] R,B-Release [SEP] 2018,132,"Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) .","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Release [SEP] 2018","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Release [SEP] 2018 [SEP] B-ProgrammingEnvironment [SEP] R"
6,0,B-PlugIn [SEP] bash,B-PlugIn [SEP] Jupyter Lab,132,"Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) .","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-PlugIn [SEP] bash [SEP] B-PlugIn [SEP] Jupyter Lab","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-PlugIn [SEP] Jupyter Lab [SEP] B-PlugIn [SEP] bash"
6,4,B-PlugIn [SEP] bash,B-ProgrammingEnvironment [SEP] R,132,"Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) .","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-PlugIn [SEP] bash [SEP] B-ProgrammingEnvironment [SEP] R","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-PlugIn [SEP] bash"
6,11,B-PlugIn [SEP] bash,B-Application [SEP] Anaconda,132,"Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) .","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-PlugIn [SEP] bash [SEP] B-Application [SEP] Anaconda","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Application [SEP] Anaconda [SEP] B-PlugIn [SEP] bash"
6,12,B-PlugIn [SEP] bash,B-Version [SEP] 3,132,"Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) .","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-PlugIn [SEP] bash [SEP] B-Version [SEP] 3","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Version [SEP] 3 [SEP] B-PlugIn [SEP] bash"
6,14,B-PlugIn [SEP] bash,B-Developer [SEP] Anaconda Software Distribution,132,"Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) .","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-PlugIn [SEP] bash [SEP] B-Developer [SEP] Anaconda Software Distribution","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Developer [SEP] Anaconda Software Distribution [SEP] B-PlugIn [SEP] bash"
6,18,B-PlugIn [SEP] bash,B-Release [SEP] 2018,132,"Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) .","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-PlugIn [SEP] bash [SEP] B-Release [SEP] 2018","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Release [SEP] 2018 [SEP] B-PlugIn [SEP] bash"
11,0,B-Application [SEP] Anaconda,B-PlugIn [SEP] Jupyter Lab,132,"Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) .","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Application [SEP] Anaconda [SEP] B-PlugIn [SEP] Jupyter Lab","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-PlugIn [SEP] Jupyter Lab [SEP] B-Application [SEP] Anaconda"
11,4,B-Application [SEP] Anaconda,B-ProgrammingEnvironment [SEP] R,132,"Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) .","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Application [SEP] Anaconda [SEP] B-ProgrammingEnvironment [SEP] R","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Application [SEP] Anaconda"
11,6,B-Application [SEP] Anaconda,B-PlugIn [SEP] bash,132,"Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) .","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Application [SEP] Anaconda [SEP] B-PlugIn [SEP] bash","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-PlugIn [SEP] bash [SEP] B-Application [SEP] Anaconda"
11,12,B-Application [SEP] Anaconda,B-Version [SEP] 3,132,"Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) .","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Application [SEP] Anaconda [SEP] B-Version [SEP] 3","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Version [SEP] 3 [SEP] B-Application [SEP] Anaconda"
11,14,B-Application [SEP] Anaconda,B-Developer [SEP] Anaconda Software Distribution,132,"Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) .","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Application [SEP] Anaconda [SEP] B-Developer [SEP] Anaconda Software Distribution","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Developer [SEP] Anaconda Software Distribution [SEP] B-Application [SEP] Anaconda"
11,18,B-Application [SEP] Anaconda,B-Release [SEP] 2018,132,"Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) .","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Application [SEP] Anaconda [SEP] B-Release [SEP] 2018","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Release [SEP] 2018 [SEP] B-Application [SEP] Anaconda"
12,0,B-Version [SEP] 3,B-PlugIn [SEP] Jupyter Lab,132,"Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) .","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Version [SEP] 3 [SEP] B-PlugIn [SEP] Jupyter Lab","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-PlugIn [SEP] Jupyter Lab [SEP] B-Version [SEP] 3"
12,4,B-Version [SEP] 3,B-ProgrammingEnvironment [SEP] R,132,"Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) .","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Version [SEP] 3 [SEP] B-ProgrammingEnvironment [SEP] R","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Version [SEP] 3"
12,6,B-Version [SEP] 3,B-PlugIn [SEP] bash,132,"Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) .","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Version [SEP] 3 [SEP] B-PlugIn [SEP] bash","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-PlugIn [SEP] bash [SEP] B-Version [SEP] 3"
12,11,B-Version [SEP] 3,B-Application [SEP] Anaconda,132,"Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) .","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Version [SEP] 3 [SEP] B-Application [SEP] Anaconda","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Application [SEP] Anaconda [SEP] B-Version [SEP] 3"
12,14,B-Version [SEP] 3,B-Developer [SEP] Anaconda Software Distribution,132,"Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) .","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Version [SEP] 3 [SEP] B-Developer [SEP] Anaconda Software Distribution","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Developer [SEP] Anaconda Software Distribution [SEP] B-Version [SEP] 3"
12,18,B-Version [SEP] 3,B-Release [SEP] 2018,132,"Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) .","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Version [SEP] 3 [SEP] B-Release [SEP] 2018","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Release [SEP] 2018 [SEP] B-Version [SEP] 3"
14,0,B-Developer [SEP] Anaconda Software Distribution,B-PlugIn [SEP] Jupyter Lab,132,"Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) .","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Developer [SEP] Anaconda Software Distribution [SEP] B-PlugIn [SEP] Jupyter Lab","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-PlugIn [SEP] Jupyter Lab [SEP] B-Developer [SEP] Anaconda Software Distribution"
14,4,B-Developer [SEP] Anaconda Software Distribution,B-ProgrammingEnvironment [SEP] R,132,"Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) .","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Developer [SEP] Anaconda Software Distribution [SEP] B-ProgrammingEnvironment [SEP] R","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Developer [SEP] Anaconda Software Distribution"
14,6,B-Developer [SEP] Anaconda Software Distribution,B-PlugIn [SEP] bash,132,"Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) .","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Developer [SEP] Anaconda Software Distribution [SEP] B-PlugIn [SEP] bash","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-PlugIn [SEP] bash [SEP] B-Developer [SEP] Anaconda Software Distribution"
14,11,B-Developer [SEP] Anaconda Software Distribution,B-Application [SEP] Anaconda,132,"Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) .","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Developer [SEP] Anaconda Software Distribution [SEP] B-Application [SEP] Anaconda","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Application [SEP] Anaconda [SEP] B-Developer [SEP] Anaconda Software Distribution"
14,12,B-Developer [SEP] Anaconda Software Distribution,B-Version [SEP] 3,132,"Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) .","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Developer [SEP] Anaconda Software Distribution [SEP] B-Version [SEP] 3","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Version [SEP] 3 [SEP] B-Developer [SEP] Anaconda Software Distribution"
14,18,B-Developer [SEP] Anaconda Software Distribution,B-Release [SEP] 2018,132,"Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) .","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Developer [SEP] Anaconda Software Distribution [SEP] B-Release [SEP] 2018","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Release [SEP] 2018 [SEP] B-Developer [SEP] Anaconda Software Distribution"
18,0,B-Release [SEP] 2018,B-PlugIn [SEP] Jupyter Lab,132,"Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) .","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Release [SEP] 2018 [SEP] B-PlugIn [SEP] Jupyter Lab","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-PlugIn [SEP] Jupyter Lab [SEP] B-Release [SEP] 2018"
18,4,B-Release [SEP] 2018,B-ProgrammingEnvironment [SEP] R,132,"Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) .","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Release [SEP] 2018 [SEP] B-ProgrammingEnvironment [SEP] R","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Release [SEP] 2018"
18,6,B-Release [SEP] 2018,B-PlugIn [SEP] bash,132,"Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) .","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Release [SEP] 2018 [SEP] B-PlugIn [SEP] bash","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-PlugIn [SEP] bash [SEP] B-Release [SEP] 2018"
18,11,B-Release [SEP] 2018,B-Application [SEP] Anaconda,132,"Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) .","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Release [SEP] 2018 [SEP] B-Application [SEP] Anaconda","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Application [SEP] Anaconda [SEP] B-Release [SEP] 2018"
18,12,B-Release [SEP] 2018,B-Version [SEP] 3,132,"Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) .","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Release [SEP] 2018 [SEP] B-Version [SEP] 3","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Version [SEP] 3 [SEP] B-Release [SEP] 2018"
18,14,B-Release [SEP] 2018,B-Developer [SEP] Anaconda Software Distribution,132,"Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) .","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Release [SEP] 2018 [SEP] B-Developer [SEP] Anaconda Software Distribution","Jupyter Lab ' s R and bash kernels were installed using Anaconda 3 ( Anaconda Software Distribution , 2018 ) . [SEP] B-Developer [SEP] Anaconda Software Distribution [SEP] B-Release [SEP] 2018"
14,1,B-Citation [SEP] container [ 52,B-Application [SEP] REA,133,The REA pipeline was implemented as a series of steps distributed within a Docker container [ 52 ] that includes all required software dependencies .,The REA pipeline was implemented as a series of steps distributed within a Docker container [ 52 ] that includes all required software dependencies . [SEP] B-Citation [SEP] container [ 52 [SEP] B-Application [SEP] REA,The REA pipeline was implemented as a series of steps distributed within a Docker container [ 52 ] that includes all required software dependencies . [SEP] B-Application [SEP] REA [SEP] B-Citation [SEP] container [ 52
14,12,B-Citation [SEP] container [ 52,B-Application [SEP] a,133,The REA pipeline was implemented as a series of steps distributed within a Docker container [ 52 ] that includes all required software dependencies .,The REA pipeline was implemented as a series of steps distributed within a Docker container [ 52 ] that includes all required software dependencies . [SEP] B-Citation [SEP] container [ 52 [SEP] B-Application [SEP] a,The REA pipeline was implemented as a series of steps distributed within a Docker container [ 52 ] that includes all required software dependencies . [SEP] B-Application [SEP] a [SEP] B-Citation [SEP] container [ 52
1,14,B-Application [SEP] REA,B-Citation [SEP] container [ 52,133,The REA pipeline was implemented as a series of steps distributed within a Docker container [ 52 ] that includes all required software dependencies .,The REA pipeline was implemented as a series of steps distributed within a Docker container [ 52 ] that includes all required software dependencies . [SEP] B-Application [SEP] REA [SEP] B-Citation [SEP] container [ 52,The REA pipeline was implemented as a series of steps distributed within a Docker container [ 52 ] that includes all required software dependencies . [SEP] B-Citation [SEP] container [ 52 [SEP] B-Application [SEP] REA
1,12,B-Application [SEP] REA,B-Application [SEP] a,133,The REA pipeline was implemented as a series of steps distributed within a Docker container [ 52 ] that includes all required software dependencies .,The REA pipeline was implemented as a series of steps distributed within a Docker container [ 52 ] that includes all required software dependencies . [SEP] B-Application [SEP] REA [SEP] B-Application [SEP] a,The REA pipeline was implemented as a series of steps distributed within a Docker container [ 52 ] that includes all required software dependencies . [SEP] B-Application [SEP] a [SEP] B-Application [SEP] REA
12,14,B-Application [SEP] a,B-Citation [SEP] container [ 52,133,The REA pipeline was implemented as a series of steps distributed within a Docker container [ 52 ] that includes all required software dependencies .,The REA pipeline was implemented as a series of steps distributed within a Docker container [ 52 ] that includes all required software dependencies . [SEP] B-Application [SEP] a [SEP] B-Citation [SEP] container [ 52,The REA pipeline was implemented as a series of steps distributed within a Docker container [ 52 ] that includes all required software dependencies . [SEP] B-Citation [SEP] container [ 52 [SEP] B-Application [SEP] a
12,1,B-Application [SEP] a,B-Application [SEP] REA,133,The REA pipeline was implemented as a series of steps distributed within a Docker container [ 52 ] that includes all required software dependencies .,The REA pipeline was implemented as a series of steps distributed within a Docker container [ 52 ] that includes all required software dependencies . [SEP] B-Application [SEP] a [SEP] B-Application [SEP] REA,The REA pipeline was implemented as a series of steps distributed within a Docker container [ 52 ] that includes all required software dependencies . [SEP] B-Application [SEP] REA [SEP] B-Application [SEP] a
8,11,B-Application [SEP] Dockerized,B-Application [SEP] Galaxy,134,"To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu .","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Dockerized [SEP] B-Application [SEP] Galaxy","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Galaxy [SEP] B-Application [SEP] Dockerized"
8,12,B-Application [SEP] Dockerized,B-Citation [SEP] [ 53 ],134,"To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu .","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Dockerized [SEP] B-Citation [SEP] [ 53 ]","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Citation [SEP] [ 53 ] [SEP] B-Application [SEP] Dockerized"
8,16,B-Application [SEP] Dockerized,B-Application [SEP] Docker,134,"To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu .","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Dockerized [SEP] B-Application [SEP] Docker","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Docker [SEP] B-Application [SEP] Dockerized"
8,18,B-Application [SEP] Dockerized,B-Version [SEP] 18 . 09 . 3,134,"To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu .","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Dockerized [SEP] B-Version [SEP] 18 . 09 . 3","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Version [SEP] 18 . 09 . 3 [SEP] B-Application [SEP] Dockerized"
8,30,B-Application [SEP] Dockerized,B-Application [SEP] Docker - CE,134,"To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu .","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Dockerized [SEP] B-Application [SEP] Docker - CE","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Docker - CE [SEP] B-Application [SEP] Dockerized"
8,34,B-Application [SEP] Dockerized,B-OperatingSystem [SEP] Ubuntu,134,"To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu .","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Dockerized [SEP] B-OperatingSystem [SEP] Ubuntu","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-OperatingSystem [SEP] Ubuntu [SEP] B-Application [SEP] Dockerized"
11,8,B-Application [SEP] Galaxy,B-Application [SEP] Dockerized,134,"To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu .","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Galaxy [SEP] B-Application [SEP] Dockerized","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Dockerized [SEP] B-Application [SEP] Galaxy"
11,12,B-Application [SEP] Galaxy,B-Citation [SEP] [ 53 ],134,"To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu .","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Galaxy [SEP] B-Citation [SEP] [ 53 ]","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Citation [SEP] [ 53 ] [SEP] B-Application [SEP] Galaxy"
11,16,B-Application [SEP] Galaxy,B-Application [SEP] Docker,134,"To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu .","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Galaxy [SEP] B-Application [SEP] Docker","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Docker [SEP] B-Application [SEP] Galaxy"
11,18,B-Application [SEP] Galaxy,B-Version [SEP] 18 . 09 . 3,134,"To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu .","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Galaxy [SEP] B-Version [SEP] 18 . 09 . 3","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Version [SEP] 18 . 09 . 3 [SEP] B-Application [SEP] Galaxy"
11,30,B-Application [SEP] Galaxy,B-Application [SEP] Docker - CE,134,"To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu .","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Galaxy [SEP] B-Application [SEP] Docker - CE","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Docker - CE [SEP] B-Application [SEP] Galaxy"
11,34,B-Application [SEP] Galaxy,B-OperatingSystem [SEP] Ubuntu,134,"To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu .","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Galaxy [SEP] B-OperatingSystem [SEP] Ubuntu","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-OperatingSystem [SEP] Ubuntu [SEP] B-Application [SEP] Galaxy"
12,8,B-Citation [SEP] [ 53 ],B-Application [SEP] Dockerized,134,"To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu .","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Citation [SEP] [ 53 ] [SEP] B-Application [SEP] Dockerized","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Dockerized [SEP] B-Citation [SEP] [ 53 ]"
12,11,B-Citation [SEP] [ 53 ],B-Application [SEP] Galaxy,134,"To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu .","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Citation [SEP] [ 53 ] [SEP] B-Application [SEP] Galaxy","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Galaxy [SEP] B-Citation [SEP] [ 53 ]"
12,16,B-Citation [SEP] [ 53 ],B-Application [SEP] Docker,134,"To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu .","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Citation [SEP] [ 53 ] [SEP] B-Application [SEP] Docker","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Docker [SEP] B-Citation [SEP] [ 53 ]"
12,18,B-Citation [SEP] [ 53 ],B-Version [SEP] 18 . 09 . 3,134,"To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu .","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Citation [SEP] [ 53 ] [SEP] B-Version [SEP] 18 . 09 . 3","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Version [SEP] 18 . 09 . 3 [SEP] B-Citation [SEP] [ 53 ]"
12,30,B-Citation [SEP] [ 53 ],B-Application [SEP] Docker - CE,134,"To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu .","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Citation [SEP] [ 53 ] [SEP] B-Application [SEP] Docker - CE","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Docker - CE [SEP] B-Citation [SEP] [ 53 ]"
12,34,B-Citation [SEP] [ 53 ],B-OperatingSystem [SEP] Ubuntu,134,"To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu .","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Citation [SEP] [ 53 ] [SEP] B-OperatingSystem [SEP] Ubuntu","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-OperatingSystem [SEP] Ubuntu [SEP] B-Citation [SEP] [ 53 ]"
16,8,B-Application [SEP] Docker,B-Application [SEP] Dockerized,134,"To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu .","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Docker [SEP] B-Application [SEP] Dockerized","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Dockerized [SEP] B-Application [SEP] Docker"
16,11,B-Application [SEP] Docker,B-Application [SEP] Galaxy,134,"To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu .","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Docker [SEP] B-Application [SEP] Galaxy","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Galaxy [SEP] B-Application [SEP] Docker"
16,12,B-Application [SEP] Docker,B-Citation [SEP] [ 53 ],134,"To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu .","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Docker [SEP] B-Citation [SEP] [ 53 ]","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Citation [SEP] [ 53 ] [SEP] B-Application [SEP] Docker"
16,18,B-Application [SEP] Docker,B-Version [SEP] 18 . 09 . 3,134,"To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu .","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Docker [SEP] B-Version [SEP] 18 . 09 . 3","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Version [SEP] 18 . 09 . 3 [SEP] B-Application [SEP] Docker"
16,30,B-Application [SEP] Docker,B-Application [SEP] Docker - CE,134,"To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu .","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Docker [SEP] B-Application [SEP] Docker - CE","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Docker - CE [SEP] B-Application [SEP] Docker"
16,34,B-Application [SEP] Docker,B-OperatingSystem [SEP] Ubuntu,134,"To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu .","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Docker [SEP] B-OperatingSystem [SEP] Ubuntu","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-OperatingSystem [SEP] Ubuntu [SEP] B-Application [SEP] Docker"
18,8,B-Version [SEP] 18 . 09 . 3,B-Application [SEP] Dockerized,134,"To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu .","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Version [SEP] 18 . 09 . 3 [SEP] B-Application [SEP] Dockerized","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Dockerized [SEP] B-Version [SEP] 18 . 09 . 3"
18,11,B-Version [SEP] 18 . 09 . 3,B-Application [SEP] Galaxy,134,"To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu .","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Version [SEP] 18 . 09 . 3 [SEP] B-Application [SEP] Galaxy","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Galaxy [SEP] B-Version [SEP] 18 . 09 . 3"
18,12,B-Version [SEP] 18 . 09 . 3,B-Citation [SEP] [ 53 ],134,"To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu .","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Version [SEP] 18 . 09 . 3 [SEP] B-Citation [SEP] [ 53 ]","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Citation [SEP] [ 53 ] [SEP] B-Version [SEP] 18 . 09 . 3"
18,16,B-Version [SEP] 18 . 09 . 3,B-Application [SEP] Docker,134,"To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu .","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Version [SEP] 18 . 09 . 3 [SEP] B-Application [SEP] Docker","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Docker [SEP] B-Version [SEP] 18 . 09 . 3"
18,30,B-Version [SEP] 18 . 09 . 3,B-Application [SEP] Docker - CE,134,"To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu .","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Version [SEP] 18 . 09 . 3 [SEP] B-Application [SEP] Docker - CE","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Docker - CE [SEP] B-Version [SEP] 18 . 09 . 3"
18,34,B-Version [SEP] 18 . 09 . 3,B-OperatingSystem [SEP] Ubuntu,134,"To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu .","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Version [SEP] 18 . 09 . 3 [SEP] B-OperatingSystem [SEP] Ubuntu","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-OperatingSystem [SEP] Ubuntu [SEP] B-Version [SEP] 18 . 09 . 3"
30,8,B-Application [SEP] Docker - CE,B-Application [SEP] Dockerized,134,"To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu .","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Docker - CE [SEP] B-Application [SEP] Dockerized","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Dockerized [SEP] B-Application [SEP] Docker - CE"
30,11,B-Application [SEP] Docker - CE,B-Application [SEP] Galaxy,134,"To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu .","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Docker - CE [SEP] B-Application [SEP] Galaxy","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Galaxy [SEP] B-Application [SEP] Docker - CE"
30,12,B-Application [SEP] Docker - CE,B-Citation [SEP] [ 53 ],134,"To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu .","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Docker - CE [SEP] B-Citation [SEP] [ 53 ]","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Citation [SEP] [ 53 ] [SEP] B-Application [SEP] Docker - CE"
30,16,B-Application [SEP] Docker - CE,B-Application [SEP] Docker,134,"To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu .","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Docker - CE [SEP] B-Application [SEP] Docker","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Docker [SEP] B-Application [SEP] Docker - CE"
30,18,B-Application [SEP] Docker - CE,B-Version [SEP] 18 . 09 . 3,134,"To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu .","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Docker - CE [SEP] B-Version [SEP] 18 . 09 . 3","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Version [SEP] 18 . 09 . 3 [SEP] B-Application [SEP] Docker - CE"
30,34,B-Application [SEP] Docker - CE,B-OperatingSystem [SEP] Ubuntu,134,"To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu .","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Docker - CE [SEP] B-OperatingSystem [SEP] Ubuntu","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-OperatingSystem [SEP] Ubuntu [SEP] B-Application [SEP] Docker - CE"
34,8,B-OperatingSystem [SEP] Ubuntu,B-Application [SEP] Dockerized,134,"To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu .","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-OperatingSystem [SEP] Ubuntu [SEP] B-Application [SEP] Dockerized","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Dockerized [SEP] B-OperatingSystem [SEP] Ubuntu"
34,11,B-OperatingSystem [SEP] Ubuntu,B-Application [SEP] Galaxy,134,"To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu .","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-OperatingSystem [SEP] Ubuntu [SEP] B-Application [SEP] Galaxy","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Galaxy [SEP] B-OperatingSystem [SEP] Ubuntu"
34,12,B-OperatingSystem [SEP] Ubuntu,B-Citation [SEP] [ 53 ],134,"To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu .","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-OperatingSystem [SEP] Ubuntu [SEP] B-Citation [SEP] [ 53 ]","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Citation [SEP] [ 53 ] [SEP] B-OperatingSystem [SEP] Ubuntu"
34,16,B-OperatingSystem [SEP] Ubuntu,B-Application [SEP] Docker,134,"To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu .","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-OperatingSystem [SEP] Ubuntu [SEP] B-Application [SEP] Docker","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Docker [SEP] B-OperatingSystem [SEP] Ubuntu"
34,18,B-OperatingSystem [SEP] Ubuntu,B-Version [SEP] 18 . 09 . 3,134,"To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu .","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-OperatingSystem [SEP] Ubuntu [SEP] B-Version [SEP] 18 . 09 . 3","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Version [SEP] 18 . 09 . 3 [SEP] B-OperatingSystem [SEP] Ubuntu"
34,30,B-OperatingSystem [SEP] Ubuntu,B-Application [SEP] Docker - CE,134,"To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu .","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-OperatingSystem [SEP] Ubuntu [SEP] B-Application [SEP] Docker - CE","To be able to download and use a Dockerized version of Galaxy [ 53 ] , Docker version 18 . 09 . 3 was first installed following the documentation on Docker - CE for Ubuntu . [SEP] B-Application [SEP] Docker - CE [SEP] B-OperatingSystem [SEP] Ubuntu"
2,4,B-Application [SEP] Galaxy,B-Version [SEP] 18 . 05,135,"Next , Galaxy version 18 . 05 was locally installed with the following commands: .","Next , Galaxy version 18 . 05 was locally installed with the following commands: . [SEP] B-Application [SEP] Galaxy [SEP] B-Version [SEP] 18 . 05","Next , Galaxy version 18 . 05 was locally installed with the following commands: . [SEP] B-Version [SEP] 18 . 05 [SEP] B-Application [SEP] Galaxy"
4,2,B-Version [SEP] 18 . 05,B-Application [SEP] Galaxy,135,"Next , Galaxy version 18 . 05 was locally installed with the following commands: .","Next , Galaxy version 18 . 05 was locally installed with the following commands: . [SEP] B-Version [SEP] 18 . 05 [SEP] B-Application [SEP] Galaxy","Next , Galaxy version 18 . 05 was locally installed with the following commands: . [SEP] B-Application [SEP] Galaxy [SEP] B-Version [SEP] 18 . 05"
10,2,B-URL [SEP] http://localhost:8080/,B-Application [SEP] Galaxy,136,This local Galaxy server can be accessed and administered on http://localhost:8080/ .,This local Galaxy server can be accessed and administered on http://localhost:8080/ . [SEP] B-URL [SEP] http://localhost:8080/ [SEP] B-Application [SEP] Galaxy,This local Galaxy server can be accessed and administered on http://localhost:8080/ . [SEP] B-Application [SEP] Galaxy [SEP] B-URL [SEP] http://localhost:8080/
2,10,B-Application [SEP] Galaxy,B-URL [SEP] http://localhost:8080/,136,This local Galaxy server can be accessed and administered on http://localhost:8080/ .,This local Galaxy server can be accessed and administered on http://localhost:8080/ . [SEP] B-Application [SEP] Galaxy [SEP] B-URL [SEP] http://localhost:8080/,This local Galaxy server can be accessed and administered on http://localhost:8080/ . [SEP] B-URL [SEP] http://localhost:8080/ [SEP] B-Application [SEP] Galaxy
40,39,B-PlugIn [SEP] pip,B-ProgrammingEnvironment [SEP] Python,137,"Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool .","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-PlugIn [SEP] pip [SEP] B-ProgrammingEnvironment [SEP] Python","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-ProgrammingEnvironment [SEP] Python [SEP] B-PlugIn [SEP] pip"
40,32,B-PlugIn [SEP] pip,B-Application [SEP] Docker,137,"Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool .","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-PlugIn [SEP] pip [SEP] B-Application [SEP] Docker","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Application [SEP] Docker [SEP] B-PlugIn [SEP] pip"
40,6,B-PlugIn [SEP] pip,B-Application [SEP] Galaxy Tool Shed,137,"Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool .","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-PlugIn [SEP] pip [SEP] B-Application [SEP] Galaxy Tool Shed","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Application [SEP] Galaxy Tool Shed [SEP] B-PlugIn [SEP] pip"
40,17,B-PlugIn [SEP] pip,B-Version [SEP] 0 . 0 . 14,137,"Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool .","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-PlugIn [SEP] pip [SEP] B-Version [SEP] 0 . 0 . 14","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Version [SEP] 0 . 0 . 14 [SEP] B-PlugIn [SEP] pip"
40,14,B-PlugIn [SEP] pip,B-Application [SEP] epic 2,137,"Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool .","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-PlugIn [SEP] pip [SEP] B-Application [SEP] epic 2","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Application [SEP] epic 2 [SEP] B-PlugIn [SEP] pip"
40,22,B-PlugIn [SEP] pip,B-Citation [SEP] [ 25 ],137,"Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool .","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-PlugIn [SEP] pip [SEP] B-Citation [SEP] [ 25 ]","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-PlugIn [SEP] pip"
39,40,B-ProgrammingEnvironment [SEP] Python,B-PlugIn [SEP] pip,137,"Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool .","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-ProgrammingEnvironment [SEP] Python [SEP] B-PlugIn [SEP] pip","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-PlugIn [SEP] pip [SEP] B-ProgrammingEnvironment [SEP] Python"
39,32,B-ProgrammingEnvironment [SEP] Python,B-Application [SEP] Docker,137,"Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool .","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-ProgrammingEnvironment [SEP] Python [SEP] B-Application [SEP] Docker","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Application [SEP] Docker [SEP] B-ProgrammingEnvironment [SEP] Python"
39,6,B-ProgrammingEnvironment [SEP] Python,B-Application [SEP] Galaxy Tool Shed,137,"Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool .","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-ProgrammingEnvironment [SEP] Python [SEP] B-Application [SEP] Galaxy Tool Shed","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Application [SEP] Galaxy Tool Shed [SEP] B-ProgrammingEnvironment [SEP] Python"
39,17,B-ProgrammingEnvironment [SEP] Python,B-Version [SEP] 0 . 0 . 14,137,"Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool .","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-ProgrammingEnvironment [SEP] Python [SEP] B-Version [SEP] 0 . 0 . 14","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Version [SEP] 0 . 0 . 14 [SEP] B-ProgrammingEnvironment [SEP] Python"
39,14,B-ProgrammingEnvironment [SEP] Python,B-Application [SEP] epic 2,137,"Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool .","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-ProgrammingEnvironment [SEP] Python [SEP] B-Application [SEP] epic 2","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Application [SEP] epic 2 [SEP] B-ProgrammingEnvironment [SEP] Python"
39,22,B-ProgrammingEnvironment [SEP] Python,B-Citation [SEP] [ 25 ],137,"Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool .","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-ProgrammingEnvironment [SEP] Python [SEP] B-Citation [SEP] [ 25 ]","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-ProgrammingEnvironment [SEP] Python"
32,40,B-Application [SEP] Docker,B-PlugIn [SEP] pip,137,"Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool .","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Application [SEP] Docker [SEP] B-PlugIn [SEP] pip","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-PlugIn [SEP] pip [SEP] B-Application [SEP] Docker"
32,39,B-Application [SEP] Docker,B-ProgrammingEnvironment [SEP] Python,137,"Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool .","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Application [SEP] Docker [SEP] B-ProgrammingEnvironment [SEP] Python","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-ProgrammingEnvironment [SEP] Python [SEP] B-Application [SEP] Docker"
32,6,B-Application [SEP] Docker,B-Application [SEP] Galaxy Tool Shed,137,"Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool .","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Application [SEP] Docker [SEP] B-Application [SEP] Galaxy Tool Shed","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Application [SEP] Galaxy Tool Shed [SEP] B-Application [SEP] Docker"
32,17,B-Application [SEP] Docker,B-Version [SEP] 0 . 0 . 14,137,"Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool .","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Application [SEP] Docker [SEP] B-Version [SEP] 0 . 0 . 14","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Version [SEP] 0 . 0 . 14 [SEP] B-Application [SEP] Docker"
32,14,B-Application [SEP] Docker,B-Application [SEP] epic 2,137,"Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool .","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Application [SEP] Docker [SEP] B-Application [SEP] epic 2","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Application [SEP] epic 2 [SEP] B-Application [SEP] Docker"
32,22,B-Application [SEP] Docker,B-Citation [SEP] [ 25 ],137,"Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool .","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Application [SEP] Docker [SEP] B-Citation [SEP] [ 25 ]","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Application [SEP] Docker"
6,40,B-Application [SEP] Galaxy Tool Shed,B-PlugIn [SEP] pip,137,"Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool .","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Application [SEP] Galaxy Tool Shed [SEP] B-PlugIn [SEP] pip","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-PlugIn [SEP] pip [SEP] B-Application [SEP] Galaxy Tool Shed"
6,39,B-Application [SEP] Galaxy Tool Shed,B-ProgrammingEnvironment [SEP] Python,137,"Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool .","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Application [SEP] Galaxy Tool Shed [SEP] B-ProgrammingEnvironment [SEP] Python","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-ProgrammingEnvironment [SEP] Python [SEP] B-Application [SEP] Galaxy Tool Shed"
6,32,B-Application [SEP] Galaxy Tool Shed,B-Application [SEP] Docker,137,"Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool .","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Application [SEP] Galaxy Tool Shed [SEP] B-Application [SEP] Docker","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Application [SEP] Docker [SEP] B-Application [SEP] Galaxy Tool Shed"
6,17,B-Application [SEP] Galaxy Tool Shed,B-Version [SEP] 0 . 0 . 14,137,"Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool .","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Application [SEP] Galaxy Tool Shed [SEP] B-Version [SEP] 0 . 0 . 14","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Version [SEP] 0 . 0 . 14 [SEP] B-Application [SEP] Galaxy Tool Shed"
6,14,B-Application [SEP] Galaxy Tool Shed,B-Application [SEP] epic 2,137,"Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool .","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Application [SEP] Galaxy Tool Shed [SEP] B-Application [SEP] epic 2","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Application [SEP] epic 2 [SEP] B-Application [SEP] Galaxy Tool Shed"
6,22,B-Application [SEP] Galaxy Tool Shed,B-Citation [SEP] [ 25 ],137,"Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool .","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Application [SEP] Galaxy Tool Shed [SEP] B-Citation [SEP] [ 25 ]","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Application [SEP] Galaxy Tool Shed"
17,40,B-Version [SEP] 0 . 0 . 14,B-PlugIn [SEP] pip,137,"Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool .","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Version [SEP] 0 . 0 . 14 [SEP] B-PlugIn [SEP] pip","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-PlugIn [SEP] pip [SEP] B-Version [SEP] 0 . 0 . 14"
17,39,B-Version [SEP] 0 . 0 . 14,B-ProgrammingEnvironment [SEP] Python,137,"Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool .","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Version [SEP] 0 . 0 . 14 [SEP] B-ProgrammingEnvironment [SEP] Python","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-ProgrammingEnvironment [SEP] Python [SEP] B-Version [SEP] 0 . 0 . 14"
17,32,B-Version [SEP] 0 . 0 . 14,B-Application [SEP] Docker,137,"Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool .","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Version [SEP] 0 . 0 . 14 [SEP] B-Application [SEP] Docker","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Application [SEP] Docker [SEP] B-Version [SEP] 0 . 0 . 14"
17,6,B-Version [SEP] 0 . 0 . 14,B-Application [SEP] Galaxy Tool Shed,137,"Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool .","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Version [SEP] 0 . 0 . 14 [SEP] B-Application [SEP] Galaxy Tool Shed","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Application [SEP] Galaxy Tool Shed [SEP] B-Version [SEP] 0 . 0 . 14"
17,14,B-Version [SEP] 0 . 0 . 14,B-Application [SEP] epic 2,137,"Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool .","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Version [SEP] 0 . 0 . 14 [SEP] B-Application [SEP] epic 2","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Application [SEP] epic 2 [SEP] B-Version [SEP] 0 . 0 . 14"
17,22,B-Version [SEP] 0 . 0 . 14,B-Citation [SEP] [ 25 ],137,"Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool .","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Version [SEP] 0 . 0 . 14 [SEP] B-Citation [SEP] [ 25 ]","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Version [SEP] 0 . 0 . 14"
14,40,B-Application [SEP] epic 2,B-PlugIn [SEP] pip,137,"Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool .","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Application [SEP] epic 2 [SEP] B-PlugIn [SEP] pip","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-PlugIn [SEP] pip [SEP] B-Application [SEP] epic 2"
14,39,B-Application [SEP] epic 2,B-ProgrammingEnvironment [SEP] Python,137,"Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool .","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Application [SEP] epic 2 [SEP] B-ProgrammingEnvironment [SEP] Python","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-ProgrammingEnvironment [SEP] Python [SEP] B-Application [SEP] epic 2"
14,32,B-Application [SEP] epic 2,B-Application [SEP] Docker,137,"Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool .","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Application [SEP] epic 2 [SEP] B-Application [SEP] Docker","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Application [SEP] Docker [SEP] B-Application [SEP] epic 2"
14,6,B-Application [SEP] epic 2,B-Application [SEP] Galaxy Tool Shed,137,"Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool .","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Application [SEP] epic 2 [SEP] B-Application [SEP] Galaxy Tool Shed","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Application [SEP] Galaxy Tool Shed [SEP] B-Application [SEP] epic 2"
14,17,B-Application [SEP] epic 2,B-Version [SEP] 0 . 0 . 14,137,"Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool .","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Application [SEP] epic 2 [SEP] B-Version [SEP] 0 . 0 . 14","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Version [SEP] 0 . 0 . 14 [SEP] B-Application [SEP] epic 2"
14,22,B-Application [SEP] epic 2,B-Citation [SEP] [ 25 ],137,"Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool .","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Application [SEP] epic 2 [SEP] B-Citation [SEP] [ 25 ]","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Application [SEP] epic 2"
22,40,B-Citation [SEP] [ 25 ],B-PlugIn [SEP] pip,137,"Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool .","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-PlugIn [SEP] pip","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-PlugIn [SEP] pip [SEP] B-Citation [SEP] [ 25 ]"
22,39,B-Citation [SEP] [ 25 ],B-ProgrammingEnvironment [SEP] Python,137,"Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool .","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-ProgrammingEnvironment [SEP] Python","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-ProgrammingEnvironment [SEP] Python [SEP] B-Citation [SEP] [ 25 ]"
22,32,B-Citation [SEP] [ 25 ],B-Application [SEP] Docker,137,"Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool .","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Application [SEP] Docker","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Application [SEP] Docker [SEP] B-Citation [SEP] [ 25 ]"
22,6,B-Citation [SEP] [ 25 ],B-Application [SEP] Galaxy Tool Shed,137,"Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool .","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Application [SEP] Galaxy Tool Shed","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Application [SEP] Galaxy Tool Shed [SEP] B-Citation [SEP] [ 25 ]"
22,17,B-Citation [SEP] [ 25 ],B-Version [SEP] 0 . 0 . 14,137,"Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool .","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Version [SEP] 0 . 0 . 14","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Version [SEP] 0 . 0 . 14 [SEP] B-Citation [SEP] [ 25 ]"
22,14,B-Citation [SEP] [ 25 ],B-Application [SEP] epic 2,137,"Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool .","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Application [SEP] epic 2","Most tools were installed from the Galaxy Tool Shed , with the exception of epic 2 v 0 . 0 . 14 [ 25 ] , which we manually installed inside the Docker container via an interactive session using Python pip and wrapped as a Galaxy tool . [SEP] B-Application [SEP] epic 2 [SEP] B-Citation [SEP] [ 25 ]"
15,1,B-Application [SEP] Galaxy Tool Shed,B-PlugIn [SEP] wrapped epic 2,138,Our wrapped epic 2 tool has been successfully integrated into Galaxy and published into the Galaxy Tool Shed [ 54 ] .,Our wrapped epic 2 tool has been successfully integrated into Galaxy and published into the Galaxy Tool Shed [ 54 ] . [SEP] B-Application [SEP] Galaxy Tool Shed [SEP] B-PlugIn [SEP] wrapped epic 2,Our wrapped epic 2 tool has been successfully integrated into Galaxy and published into the Galaxy Tool Shed [ 54 ] . [SEP] B-PlugIn [SEP] wrapped epic 2 [SEP] B-Application [SEP] Galaxy Tool Shed
15,10,B-Application [SEP] Galaxy Tool Shed,B-Application [SEP] Galaxy,138,Our wrapped epic 2 tool has been successfully integrated into Galaxy and published into the Galaxy Tool Shed [ 54 ] .,Our wrapped epic 2 tool has been successfully integrated into Galaxy and published into the Galaxy Tool Shed [ 54 ] . [SEP] B-Application [SEP] Galaxy Tool Shed [SEP] B-Application [SEP] Galaxy,Our wrapped epic 2 tool has been successfully integrated into Galaxy and published into the Galaxy Tool Shed [ 54 ] . [SEP] B-Application [SEP] Galaxy [SEP] B-Application [SEP] Galaxy Tool Shed
15,18,B-Application [SEP] Galaxy Tool Shed,B-Citation [SEP] [ 54 ],138,Our wrapped epic 2 tool has been successfully integrated into Galaxy and published into the Galaxy Tool Shed [ 54 ] .,Our wrapped epic 2 tool has been successfully integrated into Galaxy and published into the Galaxy Tool Shed [ 54 ] . [SEP] B-Application [SEP] Galaxy Tool Shed [SEP] B-Citation [SEP] [ 54 ],Our wrapped epic 2 tool has been successfully integrated into Galaxy and published into the Galaxy Tool Shed [ 54 ] . [SEP] B-Citation [SEP] [ 54 ] [SEP] B-Application [SEP] Galaxy Tool Shed
1,15,B-PlugIn [SEP] wrapped epic 2,B-Application [SEP] Galaxy Tool Shed,138,Our wrapped epic 2 tool has been successfully integrated into Galaxy and published into the Galaxy Tool Shed [ 54 ] .,Our wrapped epic 2 tool has been successfully integrated into Galaxy and published into the Galaxy Tool Shed [ 54 ] . [SEP] B-PlugIn [SEP] wrapped epic 2 [SEP] B-Application [SEP] Galaxy Tool Shed,Our wrapped epic 2 tool has been successfully integrated into Galaxy and published into the Galaxy Tool Shed [ 54 ] . [SEP] B-Application [SEP] Galaxy Tool Shed [SEP] B-PlugIn [SEP] wrapped epic 2
1,10,B-PlugIn [SEP] wrapped epic 2,B-Application [SEP] Galaxy,138,Our wrapped epic 2 tool has been successfully integrated into Galaxy and published into the Galaxy Tool Shed [ 54 ] .,Our wrapped epic 2 tool has been successfully integrated into Galaxy and published into the Galaxy Tool Shed [ 54 ] . [SEP] B-PlugIn [SEP] wrapped epic 2 [SEP] B-Application [SEP] Galaxy,Our wrapped epic 2 tool has been successfully integrated into Galaxy and published into the Galaxy Tool Shed [ 54 ] . [SEP] B-Application [SEP] Galaxy [SEP] B-PlugIn [SEP] wrapped epic 2
1,18,B-PlugIn [SEP] wrapped epic 2,B-Citation [SEP] [ 54 ],138,Our wrapped epic 2 tool has been successfully integrated into Galaxy and published into the Galaxy Tool Shed [ 54 ] .,Our wrapped epic 2 tool has been successfully integrated into Galaxy and published into the Galaxy Tool Shed [ 54 ] . [SEP] B-PlugIn [SEP] wrapped epic 2 [SEP] B-Citation [SEP] [ 54 ],Our wrapped epic 2 tool has been successfully integrated into Galaxy and published into the Galaxy Tool Shed [ 54 ] . [SEP] B-Citation [SEP] [ 54 ] [SEP] B-PlugIn [SEP] wrapped epic 2
10,15,B-Application [SEP] Galaxy,B-Application [SEP] Galaxy Tool Shed,138,Our wrapped epic 2 tool has been successfully integrated into Galaxy and published into the Galaxy Tool Shed [ 54 ] .,Our wrapped epic 2 tool has been successfully integrated into Galaxy and published into the Galaxy Tool Shed [ 54 ] . [SEP] B-Application [SEP] Galaxy [SEP] B-Application [SEP] Galaxy Tool Shed,Our wrapped epic 2 tool has been successfully integrated into Galaxy and published into the Galaxy Tool Shed [ 54 ] . [SEP] B-Application [SEP] Galaxy Tool Shed [SEP] B-Application [SEP] Galaxy
10,1,B-Application [SEP] Galaxy,B-PlugIn [SEP] wrapped epic 2,138,Our wrapped epic 2 tool has been successfully integrated into Galaxy and published into the Galaxy Tool Shed [ 54 ] .,Our wrapped epic 2 tool has been successfully integrated into Galaxy and published into the Galaxy Tool Shed [ 54 ] . [SEP] B-Application [SEP] Galaxy [SEP] B-PlugIn [SEP] wrapped epic 2,Our wrapped epic 2 tool has been successfully integrated into Galaxy and published into the Galaxy Tool Shed [ 54 ] . [SEP] B-PlugIn [SEP] wrapped epic 2 [SEP] B-Application [SEP] Galaxy
10,18,B-Application [SEP] Galaxy,B-Citation [SEP] [ 54 ],138,Our wrapped epic 2 tool has been successfully integrated into Galaxy and published into the Galaxy Tool Shed [ 54 ] .,Our wrapped epic 2 tool has been successfully integrated into Galaxy and published into the Galaxy Tool Shed [ 54 ] . [SEP] B-Application [SEP] Galaxy [SEP] B-Citation [SEP] [ 54 ],Our wrapped epic 2 tool has been successfully integrated into Galaxy and published into the Galaxy Tool Shed [ 54 ] . [SEP] B-Citation [SEP] [ 54 ] [SEP] B-Application [SEP] Galaxy
18,15,B-Citation [SEP] [ 54 ],B-Application [SEP] Galaxy Tool Shed,138,Our wrapped epic 2 tool has been successfully integrated into Galaxy and published into the Galaxy Tool Shed [ 54 ] .,Our wrapped epic 2 tool has been successfully integrated into Galaxy and published into the Galaxy Tool Shed [ 54 ] . [SEP] B-Citation [SEP] [ 54 ] [SEP] B-Application [SEP] Galaxy Tool Shed,Our wrapped epic 2 tool has been successfully integrated into Galaxy and published into the Galaxy Tool Shed [ 54 ] . [SEP] B-Application [SEP] Galaxy Tool Shed [SEP] B-Citation [SEP] [ 54 ]
18,1,B-Citation [SEP] [ 54 ],B-PlugIn [SEP] wrapped epic 2,138,Our wrapped epic 2 tool has been successfully integrated into Galaxy and published into the Galaxy Tool Shed [ 54 ] .,Our wrapped epic 2 tool has been successfully integrated into Galaxy and published into the Galaxy Tool Shed [ 54 ] . [SEP] B-Citation [SEP] [ 54 ] [SEP] B-PlugIn [SEP] wrapped epic 2,Our wrapped epic 2 tool has been successfully integrated into Galaxy and published into the Galaxy Tool Shed [ 54 ] . [SEP] B-PlugIn [SEP] wrapped epic 2 [SEP] B-Citation [SEP] [ 54 ]
18,10,B-Citation [SEP] [ 54 ],B-Application [SEP] Galaxy,138,Our wrapped epic 2 tool has been successfully integrated into Galaxy and published into the Galaxy Tool Shed [ 54 ] .,Our wrapped epic 2 tool has been successfully integrated into Galaxy and published into the Galaxy Tool Shed [ 54 ] . [SEP] B-Citation [SEP] [ 54 ] [SEP] B-Application [SEP] Galaxy,Our wrapped epic 2 tool has been successfully integrated into Galaxy and published into the Galaxy Tool Shed [ 54 ] . [SEP] B-Application [SEP] Galaxy [SEP] B-Citation [SEP] [ 54 ]
10,13,B-Application [SEP] Zenodo,B-Citation [SEP] [ 22 ],139,All of these files are also available in the associated Zenodo snapshot release [ 22 ] .,All of these files are also available in the associated Zenodo snapshot release [ 22 ] . [SEP] B-Application [SEP] Zenodo [SEP] B-Citation [SEP] [ 22 ],All of these files are also available in the associated Zenodo snapshot release [ 22 ] . [SEP] B-Citation [SEP] [ 22 ] [SEP] B-Application [SEP] Zenodo
13,10,B-Citation [SEP] [ 22 ],B-Application [SEP] Zenodo,139,All of these files are also available in the associated Zenodo snapshot release [ 22 ] .,All of these files are also available in the associated Zenodo snapshot release [ 22 ] . [SEP] B-Citation [SEP] [ 22 ] [SEP] B-Application [SEP] Zenodo,All of these files are also available in the associated Zenodo snapshot release [ 22 ] . [SEP] B-Application [SEP] Zenodo [SEP] B-Citation [SEP] [ 22 ]
22,20,B-Citation [SEP] [ 55 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848,140,"A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] .","A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] . [SEP] B-Citation [SEP] [ 55 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848","A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848 [SEP] B-Citation [SEP] [ 55 ]"
22,8,B-Citation [SEP] [ 55 ],B-Application [SEP] Trimmomatic,140,"A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] .","A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] . [SEP] B-Citation [SEP] [ 55 ] [SEP] B-Application [SEP] Trimmomatic","A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] . [SEP] B-Application [SEP] Trimmomatic [SEP] B-Citation [SEP] [ 55 ]"
22,11,B-Citation [SEP] [ 55 ],B-Version [SEP] 0 . 36 . 5,140,"A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] .","A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] . [SEP] B-Citation [SEP] [ 55 ] [SEP] B-Version [SEP] 0 . 36 . 5","A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] . [SEP] B-Version [SEP] 0 . 36 . 5 [SEP] B-Citation [SEP] [ 55 ]"
22,18,B-Citation [SEP] [ 55 ],B-Developer [SEP] Trimmomatic,140,"A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] .","A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] . [SEP] B-Citation [SEP] [ 55 ] [SEP] B-Developer [SEP] Trimmomatic","A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] . [SEP] B-Developer [SEP] Trimmomatic [SEP] B-Citation [SEP] [ 55 ]"
20,22,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848,B-Citation [SEP] [ 55 ],140,"A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] .","A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848 [SEP] B-Citation [SEP] [ 55 ]","A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] . [SEP] B-Citation [SEP] [ 55 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848"
20,8,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848,B-Application [SEP] Trimmomatic,140,"A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] .","A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848 [SEP] B-Application [SEP] Trimmomatic","A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] . [SEP] B-Application [SEP] Trimmomatic [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848"
20,11,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848,B-Version [SEP] 0 . 36 . 5,140,"A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] .","A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848 [SEP] B-Version [SEP] 0 . 36 . 5","A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] . [SEP] B-Version [SEP] 0 . 36 . 5 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848"
20,18,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848,B-Developer [SEP] Trimmomatic,140,"A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] .","A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848 [SEP] B-Developer [SEP] Trimmomatic","A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] . [SEP] B-Developer [SEP] Trimmomatic [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848"
8,22,B-Application [SEP] Trimmomatic,B-Citation [SEP] [ 55 ],140,"A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] .","A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] . [SEP] B-Application [SEP] Trimmomatic [SEP] B-Citation [SEP] [ 55 ]","A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] . [SEP] B-Citation [SEP] [ 55 ] [SEP] B-Application [SEP] Trimmomatic"
8,20,B-Application [SEP] Trimmomatic,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848,140,"A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] .","A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] . [SEP] B-Application [SEP] Trimmomatic [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848","A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848 [SEP] B-Application [SEP] Trimmomatic"
8,11,B-Application [SEP] Trimmomatic,B-Version [SEP] 0 . 36 . 5,140,"A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] .","A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] . [SEP] B-Application [SEP] Trimmomatic [SEP] B-Version [SEP] 0 . 36 . 5","A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] . [SEP] B-Version [SEP] 0 . 36 . 5 [SEP] B-Application [SEP] Trimmomatic"
8,18,B-Application [SEP] Trimmomatic,B-Developer [SEP] Trimmomatic,140,"A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] .","A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] . [SEP] B-Application [SEP] Trimmomatic [SEP] B-Developer [SEP] Trimmomatic","A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] . [SEP] B-Developer [SEP] Trimmomatic [SEP] B-Application [SEP] Trimmomatic"
11,22,B-Version [SEP] 0 . 36 . 5,B-Citation [SEP] [ 55 ],140,"A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] .","A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] . [SEP] B-Version [SEP] 0 . 36 . 5 [SEP] B-Citation [SEP] [ 55 ]","A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] . [SEP] B-Citation [SEP] [ 55 ] [SEP] B-Version [SEP] 0 . 36 . 5"
11,20,B-Version [SEP] 0 . 36 . 5,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848,140,"A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] .","A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] . [SEP] B-Version [SEP] 0 . 36 . 5 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848","A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848 [SEP] B-Version [SEP] 0 . 36 . 5"
11,8,B-Version [SEP] 0 . 36 . 5,B-Application [SEP] Trimmomatic,140,"A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] .","A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] . [SEP] B-Version [SEP] 0 . 36 . 5 [SEP] B-Application [SEP] Trimmomatic","A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] . [SEP] B-Application [SEP] Trimmomatic [SEP] B-Version [SEP] 0 . 36 . 5"
11,18,B-Version [SEP] 0 . 36 . 5,B-Developer [SEP] Trimmomatic,140,"A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] .","A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] . [SEP] B-Version [SEP] 0 . 36 . 5 [SEP] B-Developer [SEP] Trimmomatic","A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] . [SEP] B-Developer [SEP] Trimmomatic [SEP] B-Version [SEP] 0 . 36 . 5"
18,22,B-Developer [SEP] Trimmomatic,B-Citation [SEP] [ 55 ],140,"A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] .","A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] . [SEP] B-Developer [SEP] Trimmomatic [SEP] B-Citation [SEP] [ 55 ]","A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] . [SEP] B-Citation [SEP] [ 55 ] [SEP] B-Developer [SEP] Trimmomatic"
18,20,B-Developer [SEP] Trimmomatic,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848,140,"A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] .","A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] . [SEP] B-Developer [SEP] Trimmomatic [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848","A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011848 [SEP] B-Developer [SEP] Trimmomatic"
18,8,B-Developer [SEP] Trimmomatic,B-Application [SEP] Trimmomatic,140,"A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] .","A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] . [SEP] B-Developer [SEP] Trimmomatic [SEP] B-Application [SEP] Trimmomatic","A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] . [SEP] B-Application [SEP] Trimmomatic [SEP] B-Developer [SEP] Trimmomatic"
18,11,B-Developer [SEP] Trimmomatic,B-Version [SEP] 0 . 36 . 5,140,"A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] .","A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] . [SEP] B-Developer [SEP] Trimmomatic [SEP] B-Version [SEP] 0 . 36 . 5","A first step of trimming was performed with Trimmomatic ( v 0 . 36 . 5 ) ( Trimmomatic , https://scicrunch.org/resolver/RRID:SCR_011848 ) [ 55 ] . [SEP] B-Version [SEP] 0 . 36 . 5 [SEP] B-Developer [SEP] Trimmomatic"
15,18,B-Application [SEP] using Bowtie,B-Version [SEP] v 2 . 3 . 4 .,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] using Bowtie [SEP] B-Version [SEP] v 2 . 3 . 4 .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Version [SEP] v 2 . 3 . 4 . [SEP] B-Application [SEP] using Bowtie"
15,26,B-Application [SEP] using Bowtie,B-Developer [SEP] (,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] using Bowtie [SEP] B-Developer [SEP] (","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Developer [SEP] ( [SEP] B-Application [SEP] using Bowtie"
15,28,B-Application [SEP] using Bowtie,"B-URL [SEP] ,",141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] using Bowtie [SEP] B-URL [SEP] ,","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-URL [SEP] , [SEP] B-Application [SEP] using Bowtie"
15,31,B-Application [SEP] using Bowtie,B-Application [SEP] or,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] using Bowtie [SEP] B-Application [SEP] or","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] or [SEP] B-Application [SEP] using Bowtie"
15,33,B-Application [SEP] using Bowtie,B-Version [SEP] v 0 . 7 . 17 .,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] using Bowtie [SEP] B-Version [SEP] v 0 . 7 . 17 .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Version [SEP] v 0 . 7 . 17 . [SEP] B-Application [SEP] using Bowtie"
15,41,B-Application [SEP] using Bowtie,B-Developer [SEP] (,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] using Bowtie [SEP] B-Developer [SEP] (","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Developer [SEP] ( [SEP] B-Application [SEP] using Bowtie"
15,43,B-Application [SEP] using Bowtie,"B-URL [SEP] ,",141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] using Bowtie [SEP] B-URL [SEP] ,","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-URL [SEP] , [SEP] B-Application [SEP] using Bowtie"
15,52,B-Application [SEP] using Bowtie,B-Application [SEP] with SAMtools,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] using Bowtie [SEP] B-Application [SEP] with SAMtools","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] with SAMtools [SEP] B-Application [SEP] using Bowtie"
15,54,B-Application [SEP] using Bowtie,B-Citation [SEP] Flagstat [ 56,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] using Bowtie [SEP] B-Citation [SEP] Flagstat [ 56","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Citation [SEP] Flagstat [ 56 [SEP] B-Application [SEP] using Bowtie"
18,15,B-Version [SEP] v 2 . 3 . 4 .,B-Application [SEP] using Bowtie,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Version [SEP] v 2 . 3 . 4 . [SEP] B-Application [SEP] using Bowtie","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] using Bowtie [SEP] B-Version [SEP] v 2 . 3 . 4 ."
18,26,B-Version [SEP] v 2 . 3 . 4 .,B-Developer [SEP] (,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Version [SEP] v 2 . 3 . 4 . [SEP] B-Developer [SEP] (","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Developer [SEP] ( [SEP] B-Version [SEP] v 2 . 3 . 4 ."
18,28,B-Version [SEP] v 2 . 3 . 4 .,"B-URL [SEP] ,",141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Version [SEP] v 2 . 3 . 4 . [SEP] B-URL [SEP] ,","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-URL [SEP] , [SEP] B-Version [SEP] v 2 . 3 . 4 ."
18,31,B-Version [SEP] v 2 . 3 . 4 .,B-Application [SEP] or,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Version [SEP] v 2 . 3 . 4 . [SEP] B-Application [SEP] or","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] or [SEP] B-Version [SEP] v 2 . 3 . 4 ."
18,33,B-Version [SEP] v 2 . 3 . 4 .,B-Version [SEP] v 0 . 7 . 17 .,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Version [SEP] v 2 . 3 . 4 . [SEP] B-Version [SEP] v 0 . 7 . 17 .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Version [SEP] v 0 . 7 . 17 . [SEP] B-Version [SEP] v 2 . 3 . 4 ."
18,41,B-Version [SEP] v 2 . 3 . 4 .,B-Developer [SEP] (,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Version [SEP] v 2 . 3 . 4 . [SEP] B-Developer [SEP] (","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Developer [SEP] ( [SEP] B-Version [SEP] v 2 . 3 . 4 ."
18,43,B-Version [SEP] v 2 . 3 . 4 .,"B-URL [SEP] ,",141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Version [SEP] v 2 . 3 . 4 . [SEP] B-URL [SEP] ,","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-URL [SEP] , [SEP] B-Version [SEP] v 2 . 3 . 4 ."
18,52,B-Version [SEP] v 2 . 3 . 4 .,B-Application [SEP] with SAMtools,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Version [SEP] v 2 . 3 . 4 . [SEP] B-Application [SEP] with SAMtools","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] with SAMtools [SEP] B-Version [SEP] v 2 . 3 . 4 ."
18,54,B-Version [SEP] v 2 . 3 . 4 .,B-Citation [SEP] Flagstat [ 56,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Version [SEP] v 2 . 3 . 4 . [SEP] B-Citation [SEP] Flagstat [ 56","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Citation [SEP] Flagstat [ 56 [SEP] B-Version [SEP] v 2 . 3 . 4 ."
26,15,B-Developer [SEP] (,B-Application [SEP] using Bowtie,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Developer [SEP] ( [SEP] B-Application [SEP] using Bowtie","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] using Bowtie [SEP] B-Developer [SEP] ("
26,18,B-Developer [SEP] (,B-Version [SEP] v 2 . 3 . 4 .,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Developer [SEP] ( [SEP] B-Version [SEP] v 2 . 3 . 4 .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Version [SEP] v 2 . 3 . 4 . [SEP] B-Developer [SEP] ("
26,28,B-Developer [SEP] (,"B-URL [SEP] ,",141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Developer [SEP] ( [SEP] B-URL [SEP] ,","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-URL [SEP] , [SEP] B-Developer [SEP] ("
26,31,B-Developer [SEP] (,B-Application [SEP] or,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Developer [SEP] ( [SEP] B-Application [SEP] or","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] or [SEP] B-Developer [SEP] ("
26,33,B-Developer [SEP] (,B-Version [SEP] v 0 . 7 . 17 .,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Developer [SEP] ( [SEP] B-Version [SEP] v 0 . 7 . 17 .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Version [SEP] v 0 . 7 . 17 . [SEP] B-Developer [SEP] ("
26,43,B-Developer [SEP] (,"B-URL [SEP] ,",141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Developer [SEP] ( [SEP] B-URL [SEP] ,","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-URL [SEP] , [SEP] B-Developer [SEP] ("
26,52,B-Developer [SEP] (,B-Application [SEP] with SAMtools,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Developer [SEP] ( [SEP] B-Application [SEP] with SAMtools","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] with SAMtools [SEP] B-Developer [SEP] ("
26,54,B-Developer [SEP] (,B-Citation [SEP] Flagstat [ 56,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Developer [SEP] ( [SEP] B-Citation [SEP] Flagstat [ 56","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Citation [SEP] Flagstat [ 56 [SEP] B-Developer [SEP] ("
28,15,"B-URL [SEP] ,",B-Application [SEP] using Bowtie,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-URL [SEP] , [SEP] B-Application [SEP] using Bowtie","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] using Bowtie [SEP] B-URL [SEP] ,"
28,18,"B-URL [SEP] ,",B-Version [SEP] v 2 . 3 . 4 .,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-URL [SEP] , [SEP] B-Version [SEP] v 2 . 3 . 4 .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Version [SEP] v 2 . 3 . 4 . [SEP] B-URL [SEP] ,"
28,26,"B-URL [SEP] ,",B-Developer [SEP] (,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-URL [SEP] , [SEP] B-Developer [SEP] (","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Developer [SEP] ( [SEP] B-URL [SEP] ,"
28,31,"B-URL [SEP] ,",B-Application [SEP] or,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-URL [SEP] , [SEP] B-Application [SEP] or","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] or [SEP] B-URL [SEP] ,"
28,33,"B-URL [SEP] ,",B-Version [SEP] v 0 . 7 . 17 .,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-URL [SEP] , [SEP] B-Version [SEP] v 0 . 7 . 17 .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Version [SEP] v 0 . 7 . 17 . [SEP] B-URL [SEP] ,"
28,41,"B-URL [SEP] ,",B-Developer [SEP] (,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-URL [SEP] , [SEP] B-Developer [SEP] (","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Developer [SEP] ( [SEP] B-URL [SEP] ,"
28,52,"B-URL [SEP] ,",B-Application [SEP] with SAMtools,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-URL [SEP] , [SEP] B-Application [SEP] with SAMtools","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] with SAMtools [SEP] B-URL [SEP] ,"
28,54,"B-URL [SEP] ,",B-Citation [SEP] Flagstat [ 56,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-URL [SEP] , [SEP] B-Citation [SEP] Flagstat [ 56","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Citation [SEP] Flagstat [ 56 [SEP] B-URL [SEP] ,"
31,15,B-Application [SEP] or,B-Application [SEP] using Bowtie,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] or [SEP] B-Application [SEP] using Bowtie","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] using Bowtie [SEP] B-Application [SEP] or"
31,18,B-Application [SEP] or,B-Version [SEP] v 2 . 3 . 4 .,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] or [SEP] B-Version [SEP] v 2 . 3 . 4 .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Version [SEP] v 2 . 3 . 4 . [SEP] B-Application [SEP] or"
31,26,B-Application [SEP] or,B-Developer [SEP] (,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] or [SEP] B-Developer [SEP] (","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Developer [SEP] ( [SEP] B-Application [SEP] or"
31,28,B-Application [SEP] or,"B-URL [SEP] ,",141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] or [SEP] B-URL [SEP] ,","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-URL [SEP] , [SEP] B-Application [SEP] or"
31,33,B-Application [SEP] or,B-Version [SEP] v 0 . 7 . 17 .,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] or [SEP] B-Version [SEP] v 0 . 7 . 17 .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Version [SEP] v 0 . 7 . 17 . [SEP] B-Application [SEP] or"
31,41,B-Application [SEP] or,B-Developer [SEP] (,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] or [SEP] B-Developer [SEP] (","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Developer [SEP] ( [SEP] B-Application [SEP] or"
31,43,B-Application [SEP] or,"B-URL [SEP] ,",141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] or [SEP] B-URL [SEP] ,","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-URL [SEP] , [SEP] B-Application [SEP] or"
31,52,B-Application [SEP] or,B-Application [SEP] with SAMtools,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] or [SEP] B-Application [SEP] with SAMtools","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] with SAMtools [SEP] B-Application [SEP] or"
31,54,B-Application [SEP] or,B-Citation [SEP] Flagstat [ 56,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] or [SEP] B-Citation [SEP] Flagstat [ 56","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Citation [SEP] Flagstat [ 56 [SEP] B-Application [SEP] or"
33,15,B-Version [SEP] v 0 . 7 . 17 .,B-Application [SEP] using Bowtie,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Version [SEP] v 0 . 7 . 17 . [SEP] B-Application [SEP] using Bowtie","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] using Bowtie [SEP] B-Version [SEP] v 0 . 7 . 17 ."
33,18,B-Version [SEP] v 0 . 7 . 17 .,B-Version [SEP] v 2 . 3 . 4 .,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Version [SEP] v 0 . 7 . 17 . [SEP] B-Version [SEP] v 2 . 3 . 4 .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Version [SEP] v 2 . 3 . 4 . [SEP] B-Version [SEP] v 0 . 7 . 17 ."
33,26,B-Version [SEP] v 0 . 7 . 17 .,B-Developer [SEP] (,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Version [SEP] v 0 . 7 . 17 . [SEP] B-Developer [SEP] (","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Developer [SEP] ( [SEP] B-Version [SEP] v 0 . 7 . 17 ."
33,28,B-Version [SEP] v 0 . 7 . 17 .,"B-URL [SEP] ,",141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Version [SEP] v 0 . 7 . 17 . [SEP] B-URL [SEP] ,","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-URL [SEP] , [SEP] B-Version [SEP] v 0 . 7 . 17 ."
33,31,B-Version [SEP] v 0 . 7 . 17 .,B-Application [SEP] or,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Version [SEP] v 0 . 7 . 17 . [SEP] B-Application [SEP] or","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] or [SEP] B-Version [SEP] v 0 . 7 . 17 ."
33,41,B-Version [SEP] v 0 . 7 . 17 .,B-Developer [SEP] (,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Version [SEP] v 0 . 7 . 17 . [SEP] B-Developer [SEP] (","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Developer [SEP] ( [SEP] B-Version [SEP] v 0 . 7 . 17 ."
33,43,B-Version [SEP] v 0 . 7 . 17 .,"B-URL [SEP] ,",141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Version [SEP] v 0 . 7 . 17 . [SEP] B-URL [SEP] ,","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-URL [SEP] , [SEP] B-Version [SEP] v 0 . 7 . 17 ."
33,52,B-Version [SEP] v 0 . 7 . 17 .,B-Application [SEP] with SAMtools,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Version [SEP] v 0 . 7 . 17 . [SEP] B-Application [SEP] with SAMtools","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] with SAMtools [SEP] B-Version [SEP] v 0 . 7 . 17 ."
33,54,B-Version [SEP] v 0 . 7 . 17 .,B-Citation [SEP] Flagstat [ 56,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Version [SEP] v 0 . 7 . 17 . [SEP] B-Citation [SEP] Flagstat [ 56","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Citation [SEP] Flagstat [ 56 [SEP] B-Version [SEP] v 0 . 7 . 17 ."
41,15,B-Developer [SEP] (,B-Application [SEP] using Bowtie,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Developer [SEP] ( [SEP] B-Application [SEP] using Bowtie","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] using Bowtie [SEP] B-Developer [SEP] ("
41,18,B-Developer [SEP] (,B-Version [SEP] v 2 . 3 . 4 .,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Developer [SEP] ( [SEP] B-Version [SEP] v 2 . 3 . 4 .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Version [SEP] v 2 . 3 . 4 . [SEP] B-Developer [SEP] ("
41,28,B-Developer [SEP] (,"B-URL [SEP] ,",141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Developer [SEP] ( [SEP] B-URL [SEP] ,","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-URL [SEP] , [SEP] B-Developer [SEP] ("
41,31,B-Developer [SEP] (,B-Application [SEP] or,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Developer [SEP] ( [SEP] B-Application [SEP] or","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] or [SEP] B-Developer [SEP] ("
41,33,B-Developer [SEP] (,B-Version [SEP] v 0 . 7 . 17 .,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Developer [SEP] ( [SEP] B-Version [SEP] v 0 . 7 . 17 .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Version [SEP] v 0 . 7 . 17 . [SEP] B-Developer [SEP] ("
41,43,B-Developer [SEP] (,"B-URL [SEP] ,",141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Developer [SEP] ( [SEP] B-URL [SEP] ,","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-URL [SEP] , [SEP] B-Developer [SEP] ("
41,52,B-Developer [SEP] (,B-Application [SEP] with SAMtools,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Developer [SEP] ( [SEP] B-Application [SEP] with SAMtools","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] with SAMtools [SEP] B-Developer [SEP] ("
41,54,B-Developer [SEP] (,B-Citation [SEP] Flagstat [ 56,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Developer [SEP] ( [SEP] B-Citation [SEP] Flagstat [ 56","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Citation [SEP] Flagstat [ 56 [SEP] B-Developer [SEP] ("
43,15,"B-URL [SEP] ,",B-Application [SEP] using Bowtie,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-URL [SEP] , [SEP] B-Application [SEP] using Bowtie","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] using Bowtie [SEP] B-URL [SEP] ,"
43,18,"B-URL [SEP] ,",B-Version [SEP] v 2 . 3 . 4 .,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-URL [SEP] , [SEP] B-Version [SEP] v 2 . 3 . 4 .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Version [SEP] v 2 . 3 . 4 . [SEP] B-URL [SEP] ,"
43,26,"B-URL [SEP] ,",B-Developer [SEP] (,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-URL [SEP] , [SEP] B-Developer [SEP] (","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Developer [SEP] ( [SEP] B-URL [SEP] ,"
43,31,"B-URL [SEP] ,",B-Application [SEP] or,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-URL [SEP] , [SEP] B-Application [SEP] or","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] or [SEP] B-URL [SEP] ,"
43,33,"B-URL [SEP] ,",B-Version [SEP] v 0 . 7 . 17 .,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-URL [SEP] , [SEP] B-Version [SEP] v 0 . 7 . 17 .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Version [SEP] v 0 . 7 . 17 . [SEP] B-URL [SEP] ,"
43,41,"B-URL [SEP] ,",B-Developer [SEP] (,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-URL [SEP] , [SEP] B-Developer [SEP] (","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Developer [SEP] ( [SEP] B-URL [SEP] ,"
43,52,"B-URL [SEP] ,",B-Application [SEP] with SAMtools,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-URL [SEP] , [SEP] B-Application [SEP] with SAMtools","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] with SAMtools [SEP] B-URL [SEP] ,"
43,54,"B-URL [SEP] ,",B-Citation [SEP] Flagstat [ 56,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-URL [SEP] , [SEP] B-Citation [SEP] Flagstat [ 56","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Citation [SEP] Flagstat [ 56 [SEP] B-URL [SEP] ,"
52,15,B-Application [SEP] with SAMtools,B-Application [SEP] using Bowtie,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] with SAMtools [SEP] B-Application [SEP] using Bowtie","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] using Bowtie [SEP] B-Application [SEP] with SAMtools"
52,18,B-Application [SEP] with SAMtools,B-Version [SEP] v 2 . 3 . 4 .,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] with SAMtools [SEP] B-Version [SEP] v 2 . 3 . 4 .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Version [SEP] v 2 . 3 . 4 . [SEP] B-Application [SEP] with SAMtools"
52,26,B-Application [SEP] with SAMtools,B-Developer [SEP] (,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] with SAMtools [SEP] B-Developer [SEP] (","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Developer [SEP] ( [SEP] B-Application [SEP] with SAMtools"
52,28,B-Application [SEP] with SAMtools,"B-URL [SEP] ,",141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] with SAMtools [SEP] B-URL [SEP] ,","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-URL [SEP] , [SEP] B-Application [SEP] with SAMtools"
52,31,B-Application [SEP] with SAMtools,B-Application [SEP] or,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] with SAMtools [SEP] B-Application [SEP] or","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] or [SEP] B-Application [SEP] with SAMtools"
52,33,B-Application [SEP] with SAMtools,B-Version [SEP] v 0 . 7 . 17 .,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] with SAMtools [SEP] B-Version [SEP] v 0 . 7 . 17 .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Version [SEP] v 0 . 7 . 17 . [SEP] B-Application [SEP] with SAMtools"
52,41,B-Application [SEP] with SAMtools,B-Developer [SEP] (,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] with SAMtools [SEP] B-Developer [SEP] (","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Developer [SEP] ( [SEP] B-Application [SEP] with SAMtools"
52,43,B-Application [SEP] with SAMtools,"B-URL [SEP] ,",141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] with SAMtools [SEP] B-URL [SEP] ,","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-URL [SEP] , [SEP] B-Application [SEP] with SAMtools"
52,54,B-Application [SEP] with SAMtools,B-Citation [SEP] Flagstat [ 56,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] with SAMtools [SEP] B-Citation [SEP] Flagstat [ 56","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Citation [SEP] Flagstat [ 56 [SEP] B-Application [SEP] with SAMtools"
54,15,B-Citation [SEP] Flagstat [ 56,B-Application [SEP] using Bowtie,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Citation [SEP] Flagstat [ 56 [SEP] B-Application [SEP] using Bowtie","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] using Bowtie [SEP] B-Citation [SEP] Flagstat [ 56"
54,18,B-Citation [SEP] Flagstat [ 56,B-Version [SEP] v 2 . 3 . 4 .,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Citation [SEP] Flagstat [ 56 [SEP] B-Version [SEP] v 2 . 3 . 4 .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Version [SEP] v 2 . 3 . 4 . [SEP] B-Citation [SEP] Flagstat [ 56"
54,26,B-Citation [SEP] Flagstat [ 56,B-Developer [SEP] (,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Citation [SEP] Flagstat [ 56 [SEP] B-Developer [SEP] (","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Developer [SEP] ( [SEP] B-Citation [SEP] Flagstat [ 56"
54,28,B-Citation [SEP] Flagstat [ 56,"B-URL [SEP] ,",141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Citation [SEP] Flagstat [ 56 [SEP] B-URL [SEP] ,","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-URL [SEP] , [SEP] B-Citation [SEP] Flagstat [ 56"
54,31,B-Citation [SEP] Flagstat [ 56,B-Application [SEP] or,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Citation [SEP] Flagstat [ 56 [SEP] B-Application [SEP] or","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] or [SEP] B-Citation [SEP] Flagstat [ 56"
54,33,B-Citation [SEP] Flagstat [ 56,B-Version [SEP] v 0 . 7 . 17 .,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Citation [SEP] Flagstat [ 56 [SEP] B-Version [SEP] v 0 . 7 . 17 .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Version [SEP] v 0 . 7 . 17 . [SEP] B-Citation [SEP] Flagstat [ 56"
54,41,B-Citation [SEP] Flagstat [ 56,B-Developer [SEP] (,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Citation [SEP] Flagstat [ 56 [SEP] B-Developer [SEP] (","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Developer [SEP] ( [SEP] B-Citation [SEP] Flagstat [ 56"
54,43,B-Citation [SEP] Flagstat [ 56,"B-URL [SEP] ,",141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Citation [SEP] Flagstat [ 56 [SEP] B-URL [SEP] ,","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-URL [SEP] , [SEP] B-Citation [SEP] Flagstat [ 56"
54,52,B-Citation [SEP] Flagstat [ 56,B-Application [SEP] with SAMtools,141,"Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] .","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Citation [SEP] Flagstat [ 56 [SEP] B-Application [SEP] with SAMtools","Trimmed reads were mapped to the B . rapa Chiifu v 3 . 0 genome using Bowtie 2 v 2 . 3 . 4 . 2 ( Bowtie , https://scicrunch.org/resolver/RRID:SCR_005476 ) or BWA v 0 . 7 . 17 . 3 ( BWA , https://scicrunch.org/resolver/RRID:SCR_010910 ) , and the results were compared with SAMtools Flagstat [ 56 ] . [SEP] B-Application [SEP] with SAMtools [SEP] B-Citation [SEP] Flagstat [ 56"
57,55,B-Citation [SEP] [ 57 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Citation [SEP] [ 57 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525 [SEP] B-Citation [SEP] [ 57 ]"
57,53,B-Citation [SEP] [ 57 ],B-Developer [SEP] Picard,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Citation [SEP] [ 57 ] [SEP] B-Developer [SEP] Picard","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Developer [SEP] Picard [SEP] B-Citation [SEP] [ 57 ]"
57,45,B-Citation [SEP] [ 57 ],B-Version [SEP] 2 . 18 . 2 . 0,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Citation [SEP] [ 57 ] [SEP] B-Version [SEP] 2 . 18 . 2 . 0","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Version [SEP] 2 . 18 . 2 . 0 [SEP] B-Citation [SEP] [ 57 ]"
57,13,B-Citation [SEP] [ 57 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Citation [SEP] [ 57 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105 [SEP] B-Citation [SEP] [ 57 ]"
57,11,B-Citation [SEP] [ 57 ],B-Developer [SEP] SAMTOOLS,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Citation [SEP] [ 57 ] [SEP] B-Developer [SEP] SAMTOOLS","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Developer [SEP] SAMTOOLS [SEP] B-Citation [SEP] [ 57 ]"
57,7,B-Citation [SEP] [ 57 ],B-Version [SEP] 1 . 8,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Citation [SEP] [ 57 ] [SEP] B-Version [SEP] 1 . 8","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Version [SEP] 1 . 8 [SEP] B-Citation [SEP] [ 57 ]"
57,5,B-Citation [SEP] [ 57 ],B-Application [SEP] SAMtools,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Citation [SEP] [ 57 ] [SEP] B-Application [SEP] SAMtools","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Application [SEP] SAMtools [SEP] B-Citation [SEP] [ 57 ]"
57,42,B-Citation [SEP] [ 57 ],B-Application [SEP] Picard MarkDuplicates,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Citation [SEP] [ 57 ] [SEP] B-Application [SEP] Picard MarkDuplicates","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Application [SEP] Picard MarkDuplicates [SEP] B-Citation [SEP] [ 57 ]"
55,57,B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525,B-Citation [SEP] [ 57 ],142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525 [SEP] B-Citation [SEP] [ 57 ]","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Citation [SEP] [ 57 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525"
55,53,B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525,B-Developer [SEP] Picard,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525 [SEP] B-Developer [SEP] Picard","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Developer [SEP] Picard [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525"
55,45,B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525,B-Version [SEP] 2 . 18 . 2 . 0,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525 [SEP] B-Version [SEP] 2 . 18 . 2 . 0","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Version [SEP] 2 . 18 . 2 . 0 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525"
55,13,B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525"
55,11,B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525,B-Developer [SEP] SAMTOOLS,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525 [SEP] B-Developer [SEP] SAMTOOLS","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Developer [SEP] SAMTOOLS [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525"
55,7,B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525,B-Version [SEP] 1 . 8,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525 [SEP] B-Version [SEP] 1 . 8","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Version [SEP] 1 . 8 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525"
55,5,B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525,B-Application [SEP] SAMtools,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525 [SEP] B-Application [SEP] SAMtools","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Application [SEP] SAMtools [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525"
55,42,B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525,B-Application [SEP] Picard MarkDuplicates,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525 [SEP] B-Application [SEP] Picard MarkDuplicates","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Application [SEP] Picard MarkDuplicates [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525"
53,57,B-Developer [SEP] Picard,B-Citation [SEP] [ 57 ],142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Developer [SEP] Picard [SEP] B-Citation [SEP] [ 57 ]","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Citation [SEP] [ 57 ] [SEP] B-Developer [SEP] Picard"
53,55,B-Developer [SEP] Picard,B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Developer [SEP] Picard [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525 [SEP] B-Developer [SEP] Picard"
53,45,B-Developer [SEP] Picard,B-Version [SEP] 2 . 18 . 2 . 0,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Developer [SEP] Picard [SEP] B-Version [SEP] 2 . 18 . 2 . 0","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Version [SEP] 2 . 18 . 2 . 0 [SEP] B-Developer [SEP] Picard"
53,13,B-Developer [SEP] Picard,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Developer [SEP] Picard [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105 [SEP] B-Developer [SEP] Picard"
53,11,B-Developer [SEP] Picard,B-Developer [SEP] SAMTOOLS,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Developer [SEP] Picard [SEP] B-Developer [SEP] SAMTOOLS","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Developer [SEP] SAMTOOLS [SEP] B-Developer [SEP] Picard"
53,7,B-Developer [SEP] Picard,B-Version [SEP] 1 . 8,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Developer [SEP] Picard [SEP] B-Version [SEP] 1 . 8","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Version [SEP] 1 . 8 [SEP] B-Developer [SEP] Picard"
53,5,B-Developer [SEP] Picard,B-Application [SEP] SAMtools,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Developer [SEP] Picard [SEP] B-Application [SEP] SAMtools","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Application [SEP] SAMtools [SEP] B-Developer [SEP] Picard"
53,42,B-Developer [SEP] Picard,B-Application [SEP] Picard MarkDuplicates,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Developer [SEP] Picard [SEP] B-Application [SEP] Picard MarkDuplicates","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Application [SEP] Picard MarkDuplicates [SEP] B-Developer [SEP] Picard"
45,57,B-Version [SEP] 2 . 18 . 2 . 0,B-Citation [SEP] [ 57 ],142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Version [SEP] 2 . 18 . 2 . 0 [SEP] B-Citation [SEP] [ 57 ]","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Citation [SEP] [ 57 ] [SEP] B-Version [SEP] 2 . 18 . 2 . 0"
45,55,B-Version [SEP] 2 . 18 . 2 . 0,B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Version [SEP] 2 . 18 . 2 . 0 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525 [SEP] B-Version [SEP] 2 . 18 . 2 . 0"
45,53,B-Version [SEP] 2 . 18 . 2 . 0,B-Developer [SEP] Picard,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Version [SEP] 2 . 18 . 2 . 0 [SEP] B-Developer [SEP] Picard","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Developer [SEP] Picard [SEP] B-Version [SEP] 2 . 18 . 2 . 0"
45,13,B-Version [SEP] 2 . 18 . 2 . 0,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Version [SEP] 2 . 18 . 2 . 0 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105 [SEP] B-Version [SEP] 2 . 18 . 2 . 0"
45,11,B-Version [SEP] 2 . 18 . 2 . 0,B-Developer [SEP] SAMTOOLS,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Version [SEP] 2 . 18 . 2 . 0 [SEP] B-Developer [SEP] SAMTOOLS","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Developer [SEP] SAMTOOLS [SEP] B-Version [SEP] 2 . 18 . 2 . 0"
45,7,B-Version [SEP] 2 . 18 . 2 . 0,B-Version [SEP] 1 . 8,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Version [SEP] 2 . 18 . 2 . 0 [SEP] B-Version [SEP] 1 . 8","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Version [SEP] 1 . 8 [SEP] B-Version [SEP] 2 . 18 . 2 . 0"
45,5,B-Version [SEP] 2 . 18 . 2 . 0,B-Application [SEP] SAMtools,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Version [SEP] 2 . 18 . 2 . 0 [SEP] B-Application [SEP] SAMtools","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Application [SEP] SAMtools [SEP] B-Version [SEP] 2 . 18 . 2 . 0"
45,42,B-Version [SEP] 2 . 18 . 2 . 0,B-Application [SEP] Picard MarkDuplicates,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Version [SEP] 2 . 18 . 2 . 0 [SEP] B-Application [SEP] Picard MarkDuplicates","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Application [SEP] Picard MarkDuplicates [SEP] B-Version [SEP] 2 . 18 . 2 . 0"
13,57,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105,B-Citation [SEP] [ 57 ],142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105 [SEP] B-Citation [SEP] [ 57 ]","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Citation [SEP] [ 57 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105"
13,55,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105,B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105"
13,53,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105,B-Developer [SEP] Picard,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105 [SEP] B-Developer [SEP] Picard","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Developer [SEP] Picard [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105"
13,45,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105,B-Version [SEP] 2 . 18 . 2 . 0,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105 [SEP] B-Version [SEP] 2 . 18 . 2 . 0","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Version [SEP] 2 . 18 . 2 . 0 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105"
13,11,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105,B-Developer [SEP] SAMTOOLS,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105 [SEP] B-Developer [SEP] SAMTOOLS","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Developer [SEP] SAMTOOLS [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105"
13,7,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105,B-Version [SEP] 1 . 8,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105 [SEP] B-Version [SEP] 1 . 8","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Version [SEP] 1 . 8 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105"
13,5,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105,B-Application [SEP] SAMtools,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105 [SEP] B-Application [SEP] SAMtools","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Application [SEP] SAMtools [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105"
13,42,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105,B-Application [SEP] Picard MarkDuplicates,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105 [SEP] B-Application [SEP] Picard MarkDuplicates","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Application [SEP] Picard MarkDuplicates [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105"
11,57,B-Developer [SEP] SAMTOOLS,B-Citation [SEP] [ 57 ],142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Developer [SEP] SAMTOOLS [SEP] B-Citation [SEP] [ 57 ]","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Citation [SEP] [ 57 ] [SEP] B-Developer [SEP] SAMTOOLS"
11,55,B-Developer [SEP] SAMTOOLS,B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Developer [SEP] SAMTOOLS [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525 [SEP] B-Developer [SEP] SAMTOOLS"
11,53,B-Developer [SEP] SAMTOOLS,B-Developer [SEP] Picard,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Developer [SEP] SAMTOOLS [SEP] B-Developer [SEP] Picard","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Developer [SEP] Picard [SEP] B-Developer [SEP] SAMTOOLS"
11,45,B-Developer [SEP] SAMTOOLS,B-Version [SEP] 2 . 18 . 2 . 0,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Developer [SEP] SAMTOOLS [SEP] B-Version [SEP] 2 . 18 . 2 . 0","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Version [SEP] 2 . 18 . 2 . 0 [SEP] B-Developer [SEP] SAMTOOLS"
11,13,B-Developer [SEP] SAMTOOLS,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Developer [SEP] SAMTOOLS [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105 [SEP] B-Developer [SEP] SAMTOOLS"
11,7,B-Developer [SEP] SAMTOOLS,B-Version [SEP] 1 . 8,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Developer [SEP] SAMTOOLS [SEP] B-Version [SEP] 1 . 8","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Version [SEP] 1 . 8 [SEP] B-Developer [SEP] SAMTOOLS"
11,5,B-Developer [SEP] SAMTOOLS,B-Application [SEP] SAMtools,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Developer [SEP] SAMTOOLS [SEP] B-Application [SEP] SAMtools","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Application [SEP] SAMtools [SEP] B-Developer [SEP] SAMTOOLS"
11,42,B-Developer [SEP] SAMTOOLS,B-Application [SEP] Picard MarkDuplicates,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Developer [SEP] SAMTOOLS [SEP] B-Application [SEP] Picard MarkDuplicates","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Application [SEP] Picard MarkDuplicates [SEP] B-Developer [SEP] SAMTOOLS"
7,57,B-Version [SEP] 1 . 8,B-Citation [SEP] [ 57 ],142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Version [SEP] 1 . 8 [SEP] B-Citation [SEP] [ 57 ]","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Citation [SEP] [ 57 ] [SEP] B-Version [SEP] 1 . 8"
7,55,B-Version [SEP] 1 . 8,B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Version [SEP] 1 . 8 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525 [SEP] B-Version [SEP] 1 . 8"
7,53,B-Version [SEP] 1 . 8,B-Developer [SEP] Picard,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Version [SEP] 1 . 8 [SEP] B-Developer [SEP] Picard","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Developer [SEP] Picard [SEP] B-Version [SEP] 1 . 8"
7,45,B-Version [SEP] 1 . 8,B-Version [SEP] 2 . 18 . 2 . 0,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Version [SEP] 1 . 8 [SEP] B-Version [SEP] 2 . 18 . 2 . 0","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Version [SEP] 2 . 18 . 2 . 0 [SEP] B-Version [SEP] 1 . 8"
7,13,B-Version [SEP] 1 . 8,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Version [SEP] 1 . 8 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105 [SEP] B-Version [SEP] 1 . 8"
7,11,B-Version [SEP] 1 . 8,B-Developer [SEP] SAMTOOLS,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Version [SEP] 1 . 8 [SEP] B-Developer [SEP] SAMTOOLS","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Developer [SEP] SAMTOOLS [SEP] B-Version [SEP] 1 . 8"
7,5,B-Version [SEP] 1 . 8,B-Application [SEP] SAMtools,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Version [SEP] 1 . 8 [SEP] B-Application [SEP] SAMtools","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Application [SEP] SAMtools [SEP] B-Version [SEP] 1 . 8"
7,42,B-Version [SEP] 1 . 8,B-Application [SEP] Picard MarkDuplicates,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Version [SEP] 1 . 8 [SEP] B-Application [SEP] Picard MarkDuplicates","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Application [SEP] Picard MarkDuplicates [SEP] B-Version [SEP] 1 . 8"
5,57,B-Application [SEP] SAMtools,B-Citation [SEP] [ 57 ],142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Application [SEP] SAMtools [SEP] B-Citation [SEP] [ 57 ]","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Citation [SEP] [ 57 ] [SEP] B-Application [SEP] SAMtools"
5,55,B-Application [SEP] SAMtools,B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Application [SEP] SAMtools [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525 [SEP] B-Application [SEP] SAMtools"
5,53,B-Application [SEP] SAMtools,B-Developer [SEP] Picard,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Application [SEP] SAMtools [SEP] B-Developer [SEP] Picard","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Developer [SEP] Picard [SEP] B-Application [SEP] SAMtools"
5,45,B-Application [SEP] SAMtools,B-Version [SEP] 2 . 18 . 2 . 0,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Application [SEP] SAMtools [SEP] B-Version [SEP] 2 . 18 . 2 . 0","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Version [SEP] 2 . 18 . 2 . 0 [SEP] B-Application [SEP] SAMtools"
5,13,B-Application [SEP] SAMtools,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Application [SEP] SAMtools [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105 [SEP] B-Application [SEP] SAMtools"
5,11,B-Application [SEP] SAMtools,B-Developer [SEP] SAMTOOLS,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Application [SEP] SAMtools [SEP] B-Developer [SEP] SAMTOOLS","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Developer [SEP] SAMTOOLS [SEP] B-Application [SEP] SAMtools"
5,7,B-Application [SEP] SAMtools,B-Version [SEP] 1 . 8,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Application [SEP] SAMtools [SEP] B-Version [SEP] 1 . 8","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Version [SEP] 1 . 8 [SEP] B-Application [SEP] SAMtools"
5,42,B-Application [SEP] SAMtools,B-Application [SEP] Picard MarkDuplicates,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Application [SEP] SAMtools [SEP] B-Application [SEP] Picard MarkDuplicates","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Application [SEP] Picard MarkDuplicates [SEP] B-Application [SEP] SAMtools"
42,57,B-Application [SEP] Picard MarkDuplicates,B-Citation [SEP] [ 57 ],142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Application [SEP] Picard MarkDuplicates [SEP] B-Citation [SEP] [ 57 ]","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Citation [SEP] [ 57 ] [SEP] B-Application [SEP] Picard MarkDuplicates"
42,55,B-Application [SEP] Picard MarkDuplicates,B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Application [SEP] Picard MarkDuplicates [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_006525 [SEP] B-Application [SEP] Picard MarkDuplicates"
42,53,B-Application [SEP] Picard MarkDuplicates,B-Developer [SEP] Picard,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Application [SEP] Picard MarkDuplicates [SEP] B-Developer [SEP] Picard","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Developer [SEP] Picard [SEP] B-Application [SEP] Picard MarkDuplicates"
42,45,B-Application [SEP] Picard MarkDuplicates,B-Version [SEP] 2 . 18 . 2 . 0,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Application [SEP] Picard MarkDuplicates [SEP] B-Version [SEP] 2 . 18 . 2 . 0","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Version [SEP] 2 . 18 . 2 . 0 [SEP] B-Application [SEP] Picard MarkDuplicates"
42,13,B-Application [SEP] Picard MarkDuplicates,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Application [SEP] Picard MarkDuplicates [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_002105 [SEP] B-Application [SEP] Picard MarkDuplicates"
42,11,B-Application [SEP] Picard MarkDuplicates,B-Developer [SEP] SAMTOOLS,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Application [SEP] Picard MarkDuplicates [SEP] B-Developer [SEP] SAMTOOLS","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Developer [SEP] SAMTOOLS [SEP] B-Application [SEP] Picard MarkDuplicates"
42,7,B-Application [SEP] Picard MarkDuplicates,B-Version [SEP] 1 . 8,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Application [SEP] Picard MarkDuplicates [SEP] B-Version [SEP] 1 . 8","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Version [SEP] 1 . 8 [SEP] B-Application [SEP] Picard MarkDuplicates"
42,5,B-Application [SEP] Picard MarkDuplicates,B-Application [SEP] SAMtools,142,"BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] .","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Application [SEP] Picard MarkDuplicates [SEP] B-Application [SEP] SAMtools","BAM files were filtered with SAMtools v 1 . 8 ( SAMTOOLS , https://scicrunch.org/resolver/RRID:SCR_002105 ) by mapping quality ( including concordance of mates ) and by duplication state ( possible duplicate reads that may arise during library preparation ) , marked by Picard MarkDuplicates v 2 . 18 . 2 . 0 ( Picard , https://scicrunch.org/resolver/RRID:SRC_006525 ) [ 57 ] . [SEP] B-Application [SEP] SAMtools [SEP] B-Application [SEP] Picard MarkDuplicates"
17,20,B-Application [SEP] epic 2,B-Version [SEP] 0 . 0 . 14,143,"The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes .","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Application [SEP] epic 2 [SEP] B-Version [SEP] 0 . 0 . 14","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Version [SEP] 0 . 0 . 14 [SEP] B-Application [SEP] epic 2"
17,26,B-Application [SEP] epic 2,B-Application [SEP] MACS 2,143,"The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes .","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Application [SEP] epic 2 [SEP] B-Application [SEP] MACS 2","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Application [SEP] MACS 2 [SEP] B-Application [SEP] epic 2"
17,29,B-Application [SEP] epic 2,B-Version [SEP] 2 . 1 . 1,143,"The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes .","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Application [SEP] epic 2 [SEP] B-Version [SEP] 2 . 1 . 1","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Version [SEP] 2 . 1 . 1 [SEP] B-Application [SEP] epic 2"
17,35,B-Application [SEP] epic 2,B-Application [SEP] MACS 2,143,"The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes .","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Application [SEP] epic 2 [SEP] B-Application [SEP] MACS 2","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Application [SEP] MACS 2 [SEP] B-Application [SEP] epic 2"
17,38,B-Application [SEP] epic 2,B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_013291,143,"The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes .","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Application [SEP] epic 2 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_013291","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_013291 [SEP] B-Application [SEP] epic 2"
20,17,B-Version [SEP] 0 . 0 . 14,B-Application [SEP] epic 2,143,"The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes .","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Version [SEP] 0 . 0 . 14 [SEP] B-Application [SEP] epic 2","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Application [SEP] epic 2 [SEP] B-Version [SEP] 0 . 0 . 14"
20,26,B-Version [SEP] 0 . 0 . 14,B-Application [SEP] MACS 2,143,"The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes .","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Version [SEP] 0 . 0 . 14 [SEP] B-Application [SEP] MACS 2","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Application [SEP] MACS 2 [SEP] B-Version [SEP] 0 . 0 . 14"
20,29,B-Version [SEP] 0 . 0 . 14,B-Version [SEP] 2 . 1 . 1,143,"The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes .","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Version [SEP] 0 . 0 . 14 [SEP] B-Version [SEP] 2 . 1 . 1","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Version [SEP] 2 . 1 . 1 [SEP] B-Version [SEP] 0 . 0 . 14"
20,35,B-Version [SEP] 0 . 0 . 14,B-Application [SEP] MACS 2,143,"The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes .","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Version [SEP] 0 . 0 . 14 [SEP] B-Application [SEP] MACS 2","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Application [SEP] MACS 2 [SEP] B-Version [SEP] 0 . 0 . 14"
20,38,B-Version [SEP] 0 . 0 . 14,B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_013291,143,"The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes .","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Version [SEP] 0 . 0 . 14 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_013291","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_013291 [SEP] B-Version [SEP] 0 . 0 . 14"
20,47,B-Version [SEP] 0 . 0 . 14,B-Application [SEP] epic 2,143,"The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes .","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Version [SEP] 0 . 0 . 14 [SEP] B-Application [SEP] epic 2","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Application [SEP] epic 2 [SEP] B-Version [SEP] 0 . 0 . 14"
26,17,B-Application [SEP] MACS 2,B-Application [SEP] epic 2,143,"The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes .","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Application [SEP] MACS 2 [SEP] B-Application [SEP] epic 2","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Application [SEP] epic 2 [SEP] B-Application [SEP] MACS 2"
26,20,B-Application [SEP] MACS 2,B-Version [SEP] 0 . 0 . 14,143,"The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes .","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Application [SEP] MACS 2 [SEP] B-Version [SEP] 0 . 0 . 14","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Version [SEP] 0 . 0 . 14 [SEP] B-Application [SEP] MACS 2"
26,29,B-Application [SEP] MACS 2,B-Version [SEP] 2 . 1 . 1,143,"The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes .","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Application [SEP] MACS 2 [SEP] B-Version [SEP] 2 . 1 . 1","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Version [SEP] 2 . 1 . 1 [SEP] B-Application [SEP] MACS 2"
26,38,B-Application [SEP] MACS 2,B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_013291,143,"The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes .","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Application [SEP] MACS 2 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_013291","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_013291 [SEP] B-Application [SEP] MACS 2"
26,47,B-Application [SEP] MACS 2,B-Application [SEP] epic 2,143,"The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes .","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Application [SEP] MACS 2 [SEP] B-Application [SEP] epic 2","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Application [SEP] epic 2 [SEP] B-Application [SEP] MACS 2"
29,17,B-Version [SEP] 2 . 1 . 1,B-Application [SEP] epic 2,143,"The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes .","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Version [SEP] 2 . 1 . 1 [SEP] B-Application [SEP] epic 2","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Application [SEP] epic 2 [SEP] B-Version [SEP] 2 . 1 . 1"
29,20,B-Version [SEP] 2 . 1 . 1,B-Version [SEP] 0 . 0 . 14,143,"The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes .","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Version [SEP] 2 . 1 . 1 [SEP] B-Version [SEP] 0 . 0 . 14","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Version [SEP] 0 . 0 . 14 [SEP] B-Version [SEP] 2 . 1 . 1"
29,26,B-Version [SEP] 2 . 1 . 1,B-Application [SEP] MACS 2,143,"The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes .","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Version [SEP] 2 . 1 . 1 [SEP] B-Application [SEP] MACS 2","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Application [SEP] MACS 2 [SEP] B-Version [SEP] 2 . 1 . 1"
29,35,B-Version [SEP] 2 . 1 . 1,B-Application [SEP] MACS 2,143,"The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes .","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Version [SEP] 2 . 1 . 1 [SEP] B-Application [SEP] MACS 2","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Application [SEP] MACS 2 [SEP] B-Version [SEP] 2 . 1 . 1"
29,38,B-Version [SEP] 2 . 1 . 1,B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_013291,143,"The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes .","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Version [SEP] 2 . 1 . 1 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_013291","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_013291 [SEP] B-Version [SEP] 2 . 1 . 1"
29,47,B-Version [SEP] 2 . 1 . 1,B-Application [SEP] epic 2,143,"The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes .","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Version [SEP] 2 . 1 . 1 [SEP] B-Application [SEP] epic 2","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Application [SEP] epic 2 [SEP] B-Version [SEP] 2 . 1 . 1"
35,17,B-Application [SEP] MACS 2,B-Application [SEP] epic 2,143,"The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes .","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Application [SEP] MACS 2 [SEP] B-Application [SEP] epic 2","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Application [SEP] epic 2 [SEP] B-Application [SEP] MACS 2"
35,20,B-Application [SEP] MACS 2,B-Version [SEP] 0 . 0 . 14,143,"The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes .","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Application [SEP] MACS 2 [SEP] B-Version [SEP] 0 . 0 . 14","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Version [SEP] 0 . 0 . 14 [SEP] B-Application [SEP] MACS 2"
35,29,B-Application [SEP] MACS 2,B-Version [SEP] 2 . 1 . 1,143,"The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes .","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Application [SEP] MACS 2 [SEP] B-Version [SEP] 2 . 1 . 1","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Version [SEP] 2 . 1 . 1 [SEP] B-Application [SEP] MACS 2"
35,38,B-Application [SEP] MACS 2,B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_013291,143,"The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes .","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Application [SEP] MACS 2 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_013291","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_013291 [SEP] B-Application [SEP] MACS 2"
35,47,B-Application [SEP] MACS 2,B-Application [SEP] epic 2,143,"The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes .","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Application [SEP] MACS 2 [SEP] B-Application [SEP] epic 2","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Application [SEP] epic 2 [SEP] B-Application [SEP] MACS 2"
38,17,B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_013291,B-Application [SEP] epic 2,143,"The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes .","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_013291 [SEP] B-Application [SEP] epic 2","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Application [SEP] epic 2 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_013291"
38,20,B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_013291,B-Version [SEP] 0 . 0 . 14,143,"The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes .","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_013291 [SEP] B-Version [SEP] 0 . 0 . 14","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Version [SEP] 0 . 0 . 14 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_013291"
38,26,B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_013291,B-Application [SEP] MACS 2,143,"The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes .","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_013291 [SEP] B-Application [SEP] MACS 2","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Application [SEP] MACS 2 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_013291"
38,29,B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_013291,B-Version [SEP] 2 . 1 . 1,143,"The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes .","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_013291 [SEP] B-Version [SEP] 2 . 1 . 1","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Version [SEP] 2 . 1 . 1 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_013291"
38,35,B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_013291,B-Application [SEP] MACS 2,143,"The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes .","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_013291 [SEP] B-Application [SEP] MACS 2","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Application [SEP] MACS 2 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_013291"
38,47,B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_013291,B-Application [SEP] epic 2,143,"The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes .","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_013291 [SEP] B-Application [SEP] epic 2","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Application [SEP] epic 2 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_013291"
47,20,B-Application [SEP] epic 2,B-Version [SEP] 0 . 0 . 14,143,"The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes .","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Application [SEP] epic 2 [SEP] B-Version [SEP] 0 . 0 . 14","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Version [SEP] 0 . 0 . 14 [SEP] B-Application [SEP] epic 2"
47,26,B-Application [SEP] epic 2,B-Application [SEP] MACS 2,143,"The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes .","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Application [SEP] epic 2 [SEP] B-Application [SEP] MACS 2","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Application [SEP] MACS 2 [SEP] B-Application [SEP] epic 2"
47,29,B-Application [SEP] epic 2,B-Version [SEP] 2 . 1 . 1,143,"The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes .","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Application [SEP] epic 2 [SEP] B-Version [SEP] 2 . 1 . 1","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Version [SEP] 2 . 1 . 1 [SEP] B-Application [SEP] epic 2"
47,35,B-Application [SEP] epic 2,B-Application [SEP] MACS 2,143,"The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes .","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Application [SEP] epic 2 [SEP] B-Application [SEP] MACS 2","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Application [SEP] MACS 2 [SEP] B-Application [SEP] epic 2"
47,38,B-Application [SEP] epic 2,B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_013291,143,"The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes .","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-Application [SEP] epic 2 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_013291","The set of deduplicated reads was used for ChIP - seq peak calling on pooled replicates using epic 2 v 0 . 0 . 14 or MACS 2 v 2 . 1 . 1 ( MACS 2 , https://scicrunch.org/resolver/RRID:SRC_013291 ) for comparison to one another ; the epic 2 output was then used for downstream processes . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SRC_013291 [SEP] B-Application [SEP] epic 2"
32,34,"B-URL [SEP] ,",B-Citation [SEP] ) [ 59,144,"Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp .","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-URL [SEP] , [SEP] B-Citation [SEP] ) [ 59","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Citation [SEP] ) [ 59 [SEP] B-URL [SEP] ,"
32,30,"B-URL [SEP] ,",B-Developer [SEP] (,144,"Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp .","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-URL [SEP] , [SEP] B-Developer [SEP] (","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Developer [SEP] ( [SEP] B-URL [SEP] ,"
32,11,"B-URL [SEP] ,",B-Application [SEP] using,144,"Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp .","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-URL [SEP] , [SEP] B-Application [SEP] using","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Application [SEP] using [SEP] B-URL [SEP] ,"
32,23,"B-URL [SEP] ,",B-Application [SEP] using,144,"Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp .","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-URL [SEP] , [SEP] B-Application [SEP] using","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Application [SEP] using [SEP] B-URL [SEP] ,"
32,12,"B-URL [SEP] ,",B-Citation [SEP] MultiQC [ 58,144,"Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp .","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-URL [SEP] , [SEP] B-Citation [SEP] MultiQC [ 58","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Citation [SEP] MultiQC [ 58 [SEP] B-URL [SEP] ,"
32,24,"B-URL [SEP] ,",B-Version [SEP] DeepTools 3 . 1 .,144,"Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp .","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-URL [SEP] , [SEP] B-Version [SEP] DeepTools 3 . 1 .","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Version [SEP] DeepTools 3 . 1 . [SEP] B-URL [SEP] ,"
34,32,B-Citation [SEP] ) [ 59,"B-URL [SEP] ,",144,"Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp .","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Citation [SEP] ) [ 59 [SEP] B-URL [SEP] ,","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-URL [SEP] , [SEP] B-Citation [SEP] ) [ 59"
34,30,B-Citation [SEP] ) [ 59,B-Developer [SEP] (,144,"Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp .","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Citation [SEP] ) [ 59 [SEP] B-Developer [SEP] (","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Developer [SEP] ( [SEP] B-Citation [SEP] ) [ 59"
34,11,B-Citation [SEP] ) [ 59,B-Application [SEP] using,144,"Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp .","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Citation [SEP] ) [ 59 [SEP] B-Application [SEP] using","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Application [SEP] using [SEP] B-Citation [SEP] ) [ 59"
34,23,B-Citation [SEP] ) [ 59,B-Application [SEP] using,144,"Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp .","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Citation [SEP] ) [ 59 [SEP] B-Application [SEP] using","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Application [SEP] using [SEP] B-Citation [SEP] ) [ 59"
34,12,B-Citation [SEP] ) [ 59,B-Citation [SEP] MultiQC [ 58,144,"Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp .","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Citation [SEP] ) [ 59 [SEP] B-Citation [SEP] MultiQC [ 58","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Citation [SEP] MultiQC [ 58 [SEP] B-Citation [SEP] ) [ 59"
34,24,B-Citation [SEP] ) [ 59,B-Version [SEP] DeepTools 3 . 1 .,144,"Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp .","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Citation [SEP] ) [ 59 [SEP] B-Version [SEP] DeepTools 3 . 1 .","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Version [SEP] DeepTools 3 . 1 . [SEP] B-Citation [SEP] ) [ 59"
30,32,B-Developer [SEP] (,"B-URL [SEP] ,",144,"Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp .","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Developer [SEP] ( [SEP] B-URL [SEP] ,","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-URL [SEP] , [SEP] B-Developer [SEP] ("
30,34,B-Developer [SEP] (,B-Citation [SEP] ) [ 59,144,"Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp .","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Developer [SEP] ( [SEP] B-Citation [SEP] ) [ 59","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Citation [SEP] ) [ 59 [SEP] B-Developer [SEP] ("
30,11,B-Developer [SEP] (,B-Application [SEP] using,144,"Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp .","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Developer [SEP] ( [SEP] B-Application [SEP] using","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Application [SEP] using [SEP] B-Developer [SEP] ("
30,23,B-Developer [SEP] (,B-Application [SEP] using,144,"Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp .","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Developer [SEP] ( [SEP] B-Application [SEP] using","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Application [SEP] using [SEP] B-Developer [SEP] ("
30,12,B-Developer [SEP] (,B-Citation [SEP] MultiQC [ 58,144,"Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp .","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Developer [SEP] ( [SEP] B-Citation [SEP] MultiQC [ 58","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Citation [SEP] MultiQC [ 58 [SEP] B-Developer [SEP] ("
30,24,B-Developer [SEP] (,B-Version [SEP] DeepTools 3 . 1 .,144,"Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp .","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Developer [SEP] ( [SEP] B-Version [SEP] DeepTools 3 . 1 .","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Version [SEP] DeepTools 3 . 1 . [SEP] B-Developer [SEP] ("
11,32,B-Application [SEP] using,"B-URL [SEP] ,",144,"Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp .","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Application [SEP] using [SEP] B-URL [SEP] ,","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-URL [SEP] , [SEP] B-Application [SEP] using"
11,34,B-Application [SEP] using,B-Citation [SEP] ) [ 59,144,"Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp .","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Application [SEP] using [SEP] B-Citation [SEP] ) [ 59","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Citation [SEP] ) [ 59 [SEP] B-Application [SEP] using"
11,30,B-Application [SEP] using,B-Developer [SEP] (,144,"Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp .","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Application [SEP] using [SEP] B-Developer [SEP] (","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Developer [SEP] ( [SEP] B-Application [SEP] using"
11,12,B-Application [SEP] using,B-Citation [SEP] MultiQC [ 58,144,"Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp .","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Application [SEP] using [SEP] B-Citation [SEP] MultiQC [ 58","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Citation [SEP] MultiQC [ 58 [SEP] B-Application [SEP] using"
11,24,B-Application [SEP] using,B-Version [SEP] DeepTools 3 . 1 .,144,"Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp .","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Application [SEP] using [SEP] B-Version [SEP] DeepTools 3 . 1 .","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Version [SEP] DeepTools 3 . 1 . [SEP] B-Application [SEP] using"
23,32,B-Application [SEP] using,"B-URL [SEP] ,",144,"Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp .","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Application [SEP] using [SEP] B-URL [SEP] ,","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-URL [SEP] , [SEP] B-Application [SEP] using"
23,34,B-Application [SEP] using,B-Citation [SEP] ) [ 59,144,"Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp .","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Application [SEP] using [SEP] B-Citation [SEP] ) [ 59","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Citation [SEP] ) [ 59 [SEP] B-Application [SEP] using"
23,30,B-Application [SEP] using,B-Developer [SEP] (,144,"Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp .","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Application [SEP] using [SEP] B-Developer [SEP] (","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Developer [SEP] ( [SEP] B-Application [SEP] using"
23,12,B-Application [SEP] using,B-Citation [SEP] MultiQC [ 58,144,"Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp .","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Application [SEP] using [SEP] B-Citation [SEP] MultiQC [ 58","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Citation [SEP] MultiQC [ 58 [SEP] B-Application [SEP] using"
23,24,B-Application [SEP] using,B-Version [SEP] DeepTools 3 . 1 .,144,"Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp .","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Application [SEP] using [SEP] B-Version [SEP] DeepTools 3 . 1 .","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Version [SEP] DeepTools 3 . 1 . [SEP] B-Application [SEP] using"
12,32,B-Citation [SEP] MultiQC [ 58,"B-URL [SEP] ,",144,"Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp .","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Citation [SEP] MultiQC [ 58 [SEP] B-URL [SEP] ,","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-URL [SEP] , [SEP] B-Citation [SEP] MultiQC [ 58"
12,34,B-Citation [SEP] MultiQC [ 58,B-Citation [SEP] ) [ 59,144,"Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp .","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Citation [SEP] MultiQC [ 58 [SEP] B-Citation [SEP] ) [ 59","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Citation [SEP] ) [ 59 [SEP] B-Citation [SEP] MultiQC [ 58"
12,30,B-Citation [SEP] MultiQC [ 58,B-Developer [SEP] (,144,"Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp .","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Citation [SEP] MultiQC [ 58 [SEP] B-Developer [SEP] (","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Developer [SEP] ( [SEP] B-Citation [SEP] MultiQC [ 58"
12,11,B-Citation [SEP] MultiQC [ 58,B-Application [SEP] using,144,"Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp .","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Citation [SEP] MultiQC [ 58 [SEP] B-Application [SEP] using","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Application [SEP] using [SEP] B-Citation [SEP] MultiQC [ 58"
12,23,B-Citation [SEP] MultiQC [ 58,B-Application [SEP] using,144,"Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp .","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Citation [SEP] MultiQC [ 58 [SEP] B-Application [SEP] using","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Application [SEP] using [SEP] B-Citation [SEP] MultiQC [ 58"
12,24,B-Citation [SEP] MultiQC [ 58,B-Version [SEP] DeepTools 3 . 1 .,144,"Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp .","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Citation [SEP] MultiQC [ 58 [SEP] B-Version [SEP] DeepTools 3 . 1 .","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Version [SEP] DeepTools 3 . 1 . [SEP] B-Citation [SEP] MultiQC [ 58"
24,32,B-Version [SEP] DeepTools 3 . 1 .,"B-URL [SEP] ,",144,"Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp .","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Version [SEP] DeepTools 3 . 1 . [SEP] B-URL [SEP] ,","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-URL [SEP] , [SEP] B-Version [SEP] DeepTools 3 . 1 ."
24,34,B-Version [SEP] DeepTools 3 . 1 .,B-Citation [SEP] ) [ 59,144,"Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp .","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Version [SEP] DeepTools 3 . 1 . [SEP] B-Citation [SEP] ) [ 59","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Citation [SEP] ) [ 59 [SEP] B-Version [SEP] DeepTools 3 . 1 ."
24,30,B-Version [SEP] DeepTools 3 . 1 .,B-Developer [SEP] (,144,"Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp .","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Version [SEP] DeepTools 3 . 1 . [SEP] B-Developer [SEP] (","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Developer [SEP] ( [SEP] B-Version [SEP] DeepTools 3 . 1 ."
24,11,B-Version [SEP] DeepTools 3 . 1 .,B-Application [SEP] using,144,"Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp .","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Version [SEP] DeepTools 3 . 1 . [SEP] B-Application [SEP] using","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Application [SEP] using [SEP] B-Version [SEP] DeepTools 3 . 1 ."
24,23,B-Version [SEP] DeepTools 3 . 1 .,B-Application [SEP] using,144,"Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp .","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Version [SEP] DeepTools 3 . 1 . [SEP] B-Application [SEP] using","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Application [SEP] using [SEP] B-Version [SEP] DeepTools 3 . 1 ."
24,12,B-Version [SEP] DeepTools 3 . 1 .,B-Citation [SEP] MultiQC [ 58,144,"Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp .","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Version [SEP] DeepTools 3 . 1 . [SEP] B-Citation [SEP] MultiQC [ 58","Additional steps in the workflow are aimed at collecting quality metrics using MultiQC [ 58 ] , as well as producing bigwig files using DeepTools 3 . 1 . 2 ( Deeptools , https://scicrunch.org/resolver/RRID:SCR_016366 ) [ 59 ] with the coverage of filtered alignments on bin sizes of 50 bp . [SEP] B-Citation [SEP] MultiQC [ 58 [SEP] B-Version [SEP] DeepTools 3 . 1 ."
22,24,B-Application [SEP] with,B-Version [SEP] v 1 . 2 .,145,"Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values .","Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values . [SEP] B-Application [SEP] with [SEP] B-Version [SEP] v 1 . 2 .","Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values . [SEP] B-Version [SEP] v 1 . 2 . [SEP] B-Application [SEP] with"
22,30,B-Application [SEP] with,B-Developer [SEP] (,145,"Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values .","Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values . [SEP] B-Application [SEP] with [SEP] B-Developer [SEP] (","Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values . [SEP] B-Developer [SEP] ( [SEP] B-Application [SEP] with"
22,32,B-Application [SEP] with,"B-URL [SEP] ,",145,"Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values .","Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values . [SEP] B-Application [SEP] with [SEP] B-URL [SEP] ,","Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values . [SEP] B-URL [SEP] , [SEP] B-Application [SEP] with"
22,34,B-Application [SEP] with,B-Citation [SEP] ) [ 26,145,"Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values .","Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values . [SEP] B-Application [SEP] with [SEP] B-Citation [SEP] ) [ 26","Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values . [SEP] B-Citation [SEP] ) [ 26 [SEP] B-Application [SEP] with"
24,22,B-Version [SEP] v 1 . 2 .,B-Application [SEP] with,145,"Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values .","Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values . [SEP] B-Version [SEP] v 1 . 2 . [SEP] B-Application [SEP] with","Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values . [SEP] B-Application [SEP] with [SEP] B-Version [SEP] v 1 . 2 ."
24,30,B-Version [SEP] v 1 . 2 .,B-Developer [SEP] (,145,"Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values .","Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values . [SEP] B-Version [SEP] v 1 . 2 . [SEP] B-Developer [SEP] (","Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values . [SEP] B-Developer [SEP] ( [SEP] B-Version [SEP] v 1 . 2 ."
24,32,B-Version [SEP] v 1 . 2 .,"B-URL [SEP] ,",145,"Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values .","Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values . [SEP] B-Version [SEP] v 1 . 2 . [SEP] B-URL [SEP] ,","Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values . [SEP] B-URL [SEP] , [SEP] B-Version [SEP] v 1 . 2 ."
24,34,B-Version [SEP] v 1 . 2 .,B-Citation [SEP] ) [ 26,145,"Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values .","Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values . [SEP] B-Version [SEP] v 1 . 2 . [SEP] B-Citation [SEP] ) [ 26","Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values . [SEP] B-Citation [SEP] ) [ 26 [SEP] B-Version [SEP] v 1 . 2 ."
30,22,B-Developer [SEP] (,B-Application [SEP] with,145,"Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values .","Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values . [SEP] B-Developer [SEP] ( [SEP] B-Application [SEP] with","Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values . [SEP] B-Application [SEP] with [SEP] B-Developer [SEP] ("
30,24,B-Developer [SEP] (,B-Version [SEP] v 1 . 2 .,145,"Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values .","Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values . [SEP] B-Developer [SEP] ( [SEP] B-Version [SEP] v 1 . 2 .","Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values . [SEP] B-Version [SEP] v 1 . 2 . [SEP] B-Developer [SEP] ("
30,32,B-Developer [SEP] (,"B-URL [SEP] ,",145,"Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values .","Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values . [SEP] B-Developer [SEP] ( [SEP] B-URL [SEP] ,","Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values . [SEP] B-URL [SEP] , [SEP] B-Developer [SEP] ("
30,34,B-Developer [SEP] (,B-Citation [SEP] ) [ 26,145,"Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values .","Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values . [SEP] B-Developer [SEP] ( [SEP] B-Citation [SEP] ) [ 26","Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values . [SEP] B-Citation [SEP] ) [ 26 [SEP] B-Developer [SEP] ("
32,22,"B-URL [SEP] ,",B-Application [SEP] with,145,"Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values .","Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values . [SEP] B-URL [SEP] , [SEP] B-Application [SEP] with","Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values . [SEP] B-Application [SEP] with [SEP] B-URL [SEP] ,"
32,24,"B-URL [SEP] ,",B-Version [SEP] v 1 . 2 .,145,"Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values .","Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values . [SEP] B-URL [SEP] , [SEP] B-Version [SEP] v 1 . 2 .","Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values . [SEP] B-Version [SEP] v 1 . 2 . [SEP] B-URL [SEP] ,"
32,30,"B-URL [SEP] ,",B-Developer [SEP] (,145,"Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values .","Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values . [SEP] B-URL [SEP] , [SEP] B-Developer [SEP] (","Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values . [SEP] B-Developer [SEP] ( [SEP] B-URL [SEP] ,"
32,34,"B-URL [SEP] ,",B-Citation [SEP] ) [ 26,145,"Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values .","Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values . [SEP] B-URL [SEP] , [SEP] B-Citation [SEP] ) [ 26","Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values . [SEP] B-Citation [SEP] ) [ 26 [SEP] B-URL [SEP] ,"
34,22,B-Citation [SEP] ) [ 26,B-Application [SEP] with,145,"Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values .","Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values . [SEP] B-Citation [SEP] ) [ 26 [SEP] B-Application [SEP] with","Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values . [SEP] B-Application [SEP] with [SEP] B-Citation [SEP] ) [ 26"
34,24,B-Citation [SEP] ) [ 26,B-Version [SEP] v 1 . 2 .,145,"Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values .","Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values . [SEP] B-Citation [SEP] ) [ 26 [SEP] B-Version [SEP] v 1 . 2 .","Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values . [SEP] B-Version [SEP] v 1 . 2 . [SEP] B-Citation [SEP] ) [ 26"
34,30,B-Citation [SEP] ) [ 26,B-Developer [SEP] (,145,"Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values .","Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values . [SEP] B-Citation [SEP] ) [ 26 [SEP] B-Developer [SEP] (","Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values . [SEP] B-Developer [SEP] ( [SEP] B-Citation [SEP] ) [ 26"
34,32,B-Citation [SEP] ) [ 26,"B-URL [SEP] ,",145,"Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values .","Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values . [SEP] B-Citation [SEP] ) [ 26 [SEP] B-URL [SEP] ,","Differential levels of H3K 27me 3 histone mark intensities were computed by comparison of read abundances on our curated list of peaks with MAnorm v 1 . 2 . 0 ( MAnorm , https://scicrunch.org/resolver/RRID:SCR_010869 ) [ 26 ] , which uses MA plot methods to normalize read density levels on provided peaks and calculate P - values . [SEP] B-URL [SEP] , [SEP] B-Citation [SEP] ) [ 26"
50,48,B-Citation [SEP] [ 61 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011795,146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Citation [SEP] [ 61 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011795","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011795 [SEP] B-Citation [SEP] [ 61 ]"
50,44,B-Citation [SEP] [ 61 ],B-Application [SEP] ngs . plot,146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Citation [SEP] [ 61 ] [SEP] B-Application [SEP] ngs . plot","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ngs . plot [SEP] B-Citation [SEP] [ 61 ]"
50,40,B-Citation [SEP] [ 61 ],B-Application [SEP] ngs,146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Citation [SEP] [ 61 ] [SEP] B-Application [SEP] ngs","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ngs [SEP] B-Citation [SEP] [ 61 ]"
50,23,B-Citation [SEP] [ 61 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012828,146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Citation [SEP] [ 61 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012828","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012828 [SEP] B-Citation [SEP] [ 61 ]"
50,21,B-Citation [SEP] [ 61 ],B-Application [SEP] ChIPpeakAnno,146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Citation [SEP] [ 61 ] [SEP] B-Application [SEP] ChIPpeakAnno","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ChIPpeakAnno [SEP] B-Citation [SEP] [ 61 ]"
50,19,B-Citation [SEP] [ 61 ],B-Application [SEP] ChIPpeakAnno,146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Citation [SEP] [ 61 ] [SEP] B-Application [SEP] ChIPpeakAnno","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ChIPpeakAnno [SEP] B-Citation [SEP] [ 61 ]"
50,25,B-Citation [SEP] [ 61 ],B-Citation [SEP] [ 60 ],146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Citation [SEP] [ 61 ] [SEP] B-Citation [SEP] [ 60 ]","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Citation [SEP] [ 60 ] [SEP] B-Citation [SEP] [ 61 ]"
48,50,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011795,B-Citation [SEP] [ 61 ],146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011795 [SEP] B-Citation [SEP] [ 61 ]","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Citation [SEP] [ 61 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011795"
48,44,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011795,B-Application [SEP] ngs . plot,146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011795 [SEP] B-Application [SEP] ngs . plot","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ngs . plot [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011795"
48,40,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011795,B-Application [SEP] ngs,146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011795 [SEP] B-Application [SEP] ngs","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ngs [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011795"
48,23,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011795,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012828,146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011795 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012828","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012828 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011795"
48,21,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011795,B-Application [SEP] ChIPpeakAnno,146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011795 [SEP] B-Application [SEP] ChIPpeakAnno","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ChIPpeakAnno [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011795"
48,19,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011795,B-Application [SEP] ChIPpeakAnno,146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011795 [SEP] B-Application [SEP] ChIPpeakAnno","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ChIPpeakAnno [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011795"
48,25,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011795,B-Citation [SEP] [ 60 ],146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011795 [SEP] B-Citation [SEP] [ 60 ]","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Citation [SEP] [ 60 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011795"
44,50,B-Application [SEP] ngs . plot,B-Citation [SEP] [ 61 ],146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ngs . plot [SEP] B-Citation [SEP] [ 61 ]","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Citation [SEP] [ 61 ] [SEP] B-Application [SEP] ngs . plot"
44,48,B-Application [SEP] ngs . plot,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011795,146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ngs . plot [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011795","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011795 [SEP] B-Application [SEP] ngs . plot"
44,40,B-Application [SEP] ngs . plot,B-Application [SEP] ngs,146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ngs . plot [SEP] B-Application [SEP] ngs","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ngs [SEP] B-Application [SEP] ngs . plot"
44,23,B-Application [SEP] ngs . plot,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012828,146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ngs . plot [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012828","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012828 [SEP] B-Application [SEP] ngs . plot"
44,21,B-Application [SEP] ngs . plot,B-Application [SEP] ChIPpeakAnno,146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ngs . plot [SEP] B-Application [SEP] ChIPpeakAnno","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ChIPpeakAnno [SEP] B-Application [SEP] ngs . plot"
44,19,B-Application [SEP] ngs . plot,B-Application [SEP] ChIPpeakAnno,146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ngs . plot [SEP] B-Application [SEP] ChIPpeakAnno","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ChIPpeakAnno [SEP] B-Application [SEP] ngs . plot"
44,25,B-Application [SEP] ngs . plot,B-Citation [SEP] [ 60 ],146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ngs . plot [SEP] B-Citation [SEP] [ 60 ]","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Citation [SEP] [ 60 ] [SEP] B-Application [SEP] ngs . plot"
40,50,B-Application [SEP] ngs,B-Citation [SEP] [ 61 ],146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ngs [SEP] B-Citation [SEP] [ 61 ]","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Citation [SEP] [ 61 ] [SEP] B-Application [SEP] ngs"
40,48,B-Application [SEP] ngs,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011795,146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ngs [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011795","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011795 [SEP] B-Application [SEP] ngs"
40,44,B-Application [SEP] ngs,B-Application [SEP] ngs . plot,146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ngs [SEP] B-Application [SEP] ngs . plot","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ngs . plot [SEP] B-Application [SEP] ngs"
40,23,B-Application [SEP] ngs,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012828,146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ngs [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012828","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012828 [SEP] B-Application [SEP] ngs"
40,21,B-Application [SEP] ngs,B-Application [SEP] ChIPpeakAnno,146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ngs [SEP] B-Application [SEP] ChIPpeakAnno","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ChIPpeakAnno [SEP] B-Application [SEP] ngs"
40,19,B-Application [SEP] ngs,B-Application [SEP] ChIPpeakAnno,146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ngs [SEP] B-Application [SEP] ChIPpeakAnno","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ChIPpeakAnno [SEP] B-Application [SEP] ngs"
40,25,B-Application [SEP] ngs,B-Citation [SEP] [ 60 ],146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ngs [SEP] B-Citation [SEP] [ 60 ]","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Citation [SEP] [ 60 ] [SEP] B-Application [SEP] ngs"
23,50,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012828,B-Citation [SEP] [ 61 ],146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012828 [SEP] B-Citation [SEP] [ 61 ]","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Citation [SEP] [ 61 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012828"
23,48,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012828,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011795,146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012828 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011795","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011795 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012828"
23,44,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012828,B-Application [SEP] ngs . plot,146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012828 [SEP] B-Application [SEP] ngs . plot","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ngs . plot [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012828"
23,40,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012828,B-Application [SEP] ngs,146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012828 [SEP] B-Application [SEP] ngs","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ngs [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012828"
23,21,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012828,B-Application [SEP] ChIPpeakAnno,146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012828 [SEP] B-Application [SEP] ChIPpeakAnno","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ChIPpeakAnno [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012828"
23,19,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012828,B-Application [SEP] ChIPpeakAnno,146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012828 [SEP] B-Application [SEP] ChIPpeakAnno","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ChIPpeakAnno [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012828"
23,25,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012828,B-Citation [SEP] [ 60 ],146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012828 [SEP] B-Citation [SEP] [ 60 ]","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Citation [SEP] [ 60 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012828"
21,50,B-Application [SEP] ChIPpeakAnno,B-Citation [SEP] [ 61 ],146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ChIPpeakAnno [SEP] B-Citation [SEP] [ 61 ]","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Citation [SEP] [ 61 ] [SEP] B-Application [SEP] ChIPpeakAnno"
21,48,B-Application [SEP] ChIPpeakAnno,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011795,146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ChIPpeakAnno [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011795","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011795 [SEP] B-Application [SEP] ChIPpeakAnno"
21,44,B-Application [SEP] ChIPpeakAnno,B-Application [SEP] ngs . plot,146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ChIPpeakAnno [SEP] B-Application [SEP] ngs . plot","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ngs . plot [SEP] B-Application [SEP] ChIPpeakAnno"
21,40,B-Application [SEP] ChIPpeakAnno,B-Application [SEP] ngs,146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ChIPpeakAnno [SEP] B-Application [SEP] ngs","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ngs [SEP] B-Application [SEP] ChIPpeakAnno"
21,23,B-Application [SEP] ChIPpeakAnno,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012828,146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ChIPpeakAnno [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012828","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012828 [SEP] B-Application [SEP] ChIPpeakAnno"
21,25,B-Application [SEP] ChIPpeakAnno,B-Citation [SEP] [ 60 ],146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ChIPpeakAnno [SEP] B-Citation [SEP] [ 60 ]","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Citation [SEP] [ 60 ] [SEP] B-Application [SEP] ChIPpeakAnno"
19,50,B-Application [SEP] ChIPpeakAnno,B-Citation [SEP] [ 61 ],146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ChIPpeakAnno [SEP] B-Citation [SEP] [ 61 ]","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Citation [SEP] [ 61 ] [SEP] B-Application [SEP] ChIPpeakAnno"
19,48,B-Application [SEP] ChIPpeakAnno,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011795,146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ChIPpeakAnno [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011795","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011795 [SEP] B-Application [SEP] ChIPpeakAnno"
19,44,B-Application [SEP] ChIPpeakAnno,B-Application [SEP] ngs . plot,146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ChIPpeakAnno [SEP] B-Application [SEP] ngs . plot","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ngs . plot [SEP] B-Application [SEP] ChIPpeakAnno"
19,40,B-Application [SEP] ChIPpeakAnno,B-Application [SEP] ngs,146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ChIPpeakAnno [SEP] B-Application [SEP] ngs","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ngs [SEP] B-Application [SEP] ChIPpeakAnno"
19,23,B-Application [SEP] ChIPpeakAnno,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012828,146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ChIPpeakAnno [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012828","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012828 [SEP] B-Application [SEP] ChIPpeakAnno"
19,25,B-Application [SEP] ChIPpeakAnno,B-Citation [SEP] [ 60 ],146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ChIPpeakAnno [SEP] B-Citation [SEP] [ 60 ]","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Citation [SEP] [ 60 ] [SEP] B-Application [SEP] ChIPpeakAnno"
25,50,B-Citation [SEP] [ 60 ],B-Citation [SEP] [ 61 ],146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Citation [SEP] [ 60 ] [SEP] B-Citation [SEP] [ 61 ]","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Citation [SEP] [ 61 ] [SEP] B-Citation [SEP] [ 60 ]"
25,48,B-Citation [SEP] [ 60 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011795,146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Citation [SEP] [ 60 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011795","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_011795 [SEP] B-Citation [SEP] [ 60 ]"
25,44,B-Citation [SEP] [ 60 ],B-Application [SEP] ngs . plot,146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Citation [SEP] [ 60 ] [SEP] B-Application [SEP] ngs . plot","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ngs . plot [SEP] B-Citation [SEP] [ 60 ]"
25,40,B-Citation [SEP] [ 60 ],B-Application [SEP] ngs,146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Citation [SEP] [ 60 ] [SEP] B-Application [SEP] ngs","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ngs [SEP] B-Citation [SEP] [ 60 ]"
25,23,B-Citation [SEP] [ 60 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012828,146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Citation [SEP] [ 60 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012828","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_012828 [SEP] B-Citation [SEP] [ 60 ]"
25,21,B-Citation [SEP] [ 60 ],B-Application [SEP] ChIPpeakAnno,146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Citation [SEP] [ 60 ] [SEP] B-Application [SEP] ChIPpeakAnno","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ChIPpeakAnno [SEP] B-Citation [SEP] [ 60 ]"
25,19,B-Citation [SEP] [ 60 ],B-Application [SEP] ChIPpeakAnno,146,"Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] .","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Citation [SEP] [ 60 ] [SEP] B-Application [SEP] ChIPpeakAnno","Peaks from either epic 2 or MAnorm were annotated according to overlap of B . rapa gene models using ChIPpeakAnno ( ChIPpeakAnno , https://scicrunch.org/resolver/RRID:SCR_012828 ) [ 60 ] , and the distribution of ChIP signal over genes was visualized with ngs . plot ( ngs . plot , https://scicrunch.org/resolver/RRID:SCR_011795 ) [ 61 ] . [SEP] B-Application [SEP] ChIPpeakAnno [SEP] B-Citation [SEP] [ 60 ]"
11,12,B-Application [SEP] DESeq,B-Version [SEP] 2 1 . 18 .,147,"The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences .","The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences . [SEP] B-Application [SEP] DESeq [SEP] B-Version [SEP] 2 1 . 18 .","The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences . [SEP] B-Version [SEP] 2 1 . 18 . [SEP] B-Application [SEP] DESeq"
11,18,B-Application [SEP] DESeq,B-Application [SEP] (,147,"The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences .","The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences . [SEP] B-Application [SEP] DESeq [SEP] B-Application [SEP] (","The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences . [SEP] B-Application [SEP] ( [SEP] B-Application [SEP] DESeq"
11,19,B-Application [SEP] DESeq,B-Version [SEP] DESeq,147,"The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences .","The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences . [SEP] B-Application [SEP] DESeq [SEP] B-Version [SEP] DESeq","The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences . [SEP] B-Version [SEP] DESeq [SEP] B-Application [SEP] DESeq"
11,21,B-Application [SEP] DESeq,"B-URL [SEP] ,",147,"The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences .","The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences . [SEP] B-Application [SEP] DESeq [SEP] B-URL [SEP] ,","The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences . [SEP] B-URL [SEP] , [SEP] B-Application [SEP] DESeq"
12,11,B-Version [SEP] 2 1 . 18 .,B-Application [SEP] DESeq,147,"The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences .","The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences . [SEP] B-Version [SEP] 2 1 . 18 . [SEP] B-Application [SEP] DESeq","The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences . [SEP] B-Application [SEP] DESeq [SEP] B-Version [SEP] 2 1 . 18 ."
12,18,B-Version [SEP] 2 1 . 18 .,B-Application [SEP] (,147,"The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences .","The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences . [SEP] B-Version [SEP] 2 1 . 18 . [SEP] B-Application [SEP] (","The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences . [SEP] B-Application [SEP] ( [SEP] B-Version [SEP] 2 1 . 18 ."
12,19,B-Version [SEP] 2 1 . 18 .,B-Version [SEP] DESeq,147,"The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences .","The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences . [SEP] B-Version [SEP] 2 1 . 18 . [SEP] B-Version [SEP] DESeq","The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences . [SEP] B-Version [SEP] DESeq [SEP] B-Version [SEP] 2 1 . 18 ."
12,21,B-Version [SEP] 2 1 . 18 .,"B-URL [SEP] ,",147,"The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences .","The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences . [SEP] B-Version [SEP] 2 1 . 18 . [SEP] B-URL [SEP] ,","The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences . [SEP] B-URL [SEP] , [SEP] B-Version [SEP] 2 1 . 18 ."
18,11,B-Application [SEP] (,B-Application [SEP] DESeq,147,"The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences .","The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences . [SEP] B-Application [SEP] ( [SEP] B-Application [SEP] DESeq","The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences . [SEP] B-Application [SEP] DESeq [SEP] B-Application [SEP] ("
18,12,B-Application [SEP] (,B-Version [SEP] 2 1 . 18 .,147,"The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences .","The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences . [SEP] B-Application [SEP] ( [SEP] B-Version [SEP] 2 1 . 18 .","The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences . [SEP] B-Version [SEP] 2 1 . 18 . [SEP] B-Application [SEP] ("
18,19,B-Application [SEP] (,B-Version [SEP] DESeq,147,"The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences .","The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences . [SEP] B-Application [SEP] ( [SEP] B-Version [SEP] DESeq","The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences . [SEP] B-Version [SEP] DESeq [SEP] B-Application [SEP] ("
18,21,B-Application [SEP] (,"B-URL [SEP] ,",147,"The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences .","The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences . [SEP] B-Application [SEP] ( [SEP] B-URL [SEP] ,","The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences . [SEP] B-URL [SEP] , [SEP] B-Application [SEP] ("
19,11,B-Version [SEP] DESeq,B-Application [SEP] DESeq,147,"The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences .","The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences . [SEP] B-Version [SEP] DESeq [SEP] B-Application [SEP] DESeq","The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences . [SEP] B-Application [SEP] DESeq [SEP] B-Version [SEP] DESeq"
19,12,B-Version [SEP] DESeq,B-Version [SEP] 2 1 . 18 .,147,"The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences .","The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences . [SEP] B-Version [SEP] DESeq [SEP] B-Version [SEP] 2 1 . 18 .","The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences . [SEP] B-Version [SEP] 2 1 . 18 . [SEP] B-Version [SEP] DESeq"
19,18,B-Version [SEP] DESeq,B-Application [SEP] (,147,"The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences .","The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences . [SEP] B-Version [SEP] DESeq [SEP] B-Application [SEP] (","The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences . [SEP] B-Application [SEP] ( [SEP] B-Version [SEP] DESeq"
19,21,B-Version [SEP] DESeq,"B-URL [SEP] ,",147,"The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences .","The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences . [SEP] B-Version [SEP] DESeq [SEP] B-URL [SEP] ,","The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences . [SEP] B-URL [SEP] , [SEP] B-Version [SEP] DESeq"
21,11,"B-URL [SEP] ,",B-Application [SEP] DESeq,147,"The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences .","The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences . [SEP] B-URL [SEP] , [SEP] B-Application [SEP] DESeq","The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences . [SEP] B-Application [SEP] DESeq [SEP] B-URL [SEP] ,"
21,12,"B-URL [SEP] ,",B-Version [SEP] 2 1 . 18 .,147,"The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences .","The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences . [SEP] B-URL [SEP] , [SEP] B-Version [SEP] 2 1 . 18 .","The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences . [SEP] B-Version [SEP] 2 1 . 18 . [SEP] B-URL [SEP] ,"
21,18,"B-URL [SEP] ,",B-Application [SEP] (,147,"The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences .","The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences . [SEP] B-URL [SEP] , [SEP] B-Application [SEP] (","The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences . [SEP] B-Application [SEP] ( [SEP] B-URL [SEP] ,"
21,19,"B-URL [SEP] ,",B-Version [SEP] DESeq,147,"The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences .","The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences . [SEP] B-URL [SEP] , [SEP] B-Version [SEP] DESeq","The obtained counts were used for mRNA differential expression analysis with DESeq 2 1 . 18 . 1 ( DESeq 2 , https://scicrunch.org/resolver/RRID:SCR_015687 ) to infer gene expression changes of leaves compared to inflorescences . [SEP] B-Version [SEP] DESeq [SEP] B-URL [SEP] ,"
59,63,B-Application [SEP] REViGO,B-Citation [SEP] [ 34 ],148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Application [SEP] REViGO [SEP] B-Citation [SEP] [ 34 ]","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Citation [SEP] [ 34 ] [SEP] B-Application [SEP] REViGO"
59,61,B-Application [SEP] REViGO,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Application [SEP] REViGO [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825 [SEP] B-Application [SEP] REViGO"
59,6,B-Application [SEP] REViGO,B-Application [SEP] agriGO,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Application [SEP] REViGO [SEP] B-Application [SEP] agriGO","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Application [SEP] agriGO [SEP] B-Application [SEP] REViGO"
59,14,B-Application [SEP] REViGO,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Application [SEP] REViGO [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989 [SEP] B-Application [SEP] REViGO"
59,12,B-Application [SEP] REViGO,B-Developer [SEP] agriGO,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Application [SEP] REViGO [SEP] B-Developer [SEP] agriGO","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Developer [SEP] agriGO [SEP] B-Application [SEP] REViGO"
59,8,B-Application [SEP] REViGO,B-Version [SEP] 2 . 0,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Application [SEP] REViGO [SEP] B-Version [SEP] 2 . 0","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Application [SEP] REViGO"
59,16,B-Application [SEP] REViGO,B-Citation [SEP] [ 33 ],148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Application [SEP] REViGO [SEP] B-Citation [SEP] [ 33 ]","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Citation [SEP] [ 33 ] [SEP] B-Application [SEP] REViGO"
63,59,B-Citation [SEP] [ 34 ],B-Application [SEP] REViGO,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Citation [SEP] [ 34 ] [SEP] B-Application [SEP] REViGO","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Application [SEP] REViGO [SEP] B-Citation [SEP] [ 34 ]"
63,61,B-Citation [SEP] [ 34 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Citation [SEP] [ 34 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825 [SEP] B-Citation [SEP] [ 34 ]"
63,57,B-Citation [SEP] [ 34 ],B-Application [SEP] REViGO,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Citation [SEP] [ 34 ] [SEP] B-Application [SEP] REViGO","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Application [SEP] REViGO [SEP] B-Citation [SEP] [ 34 ]"
63,6,B-Citation [SEP] [ 34 ],B-Application [SEP] agriGO,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Citation [SEP] [ 34 ] [SEP] B-Application [SEP] agriGO","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Application [SEP] agriGO [SEP] B-Citation [SEP] [ 34 ]"
63,14,B-Citation [SEP] [ 34 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Citation [SEP] [ 34 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989 [SEP] B-Citation [SEP] [ 34 ]"
63,12,B-Citation [SEP] [ 34 ],B-Developer [SEP] agriGO,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Citation [SEP] [ 34 ] [SEP] B-Developer [SEP] agriGO","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Developer [SEP] agriGO [SEP] B-Citation [SEP] [ 34 ]"
63,8,B-Citation [SEP] [ 34 ],B-Version [SEP] 2 . 0,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Citation [SEP] [ 34 ] [SEP] B-Version [SEP] 2 . 0","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Citation [SEP] [ 34 ]"
63,16,B-Citation [SEP] [ 34 ],B-Citation [SEP] [ 33 ],148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Citation [SEP] [ 34 ] [SEP] B-Citation [SEP] [ 33 ]","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Citation [SEP] [ 33 ] [SEP] B-Citation [SEP] [ 34 ]"
61,59,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825,B-Application [SEP] REViGO,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825 [SEP] B-Application [SEP] REViGO","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Application [SEP] REViGO [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825"
61,63,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825,B-Citation [SEP] [ 34 ],148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825 [SEP] B-Citation [SEP] [ 34 ]","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Citation [SEP] [ 34 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825"
61,57,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825,B-Application [SEP] REViGO,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825 [SEP] B-Application [SEP] REViGO","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Application [SEP] REViGO [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825"
61,6,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825,B-Application [SEP] agriGO,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825 [SEP] B-Application [SEP] agriGO","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Application [SEP] agriGO [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825"
61,14,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825"
61,12,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825,B-Developer [SEP] agriGO,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825 [SEP] B-Developer [SEP] agriGO","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Developer [SEP] agriGO [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825"
61,8,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825,B-Version [SEP] 2 . 0,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825 [SEP] B-Version [SEP] 2 . 0","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Version [SEP] 2 . 0 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825"
61,16,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825,B-Citation [SEP] [ 33 ],148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825 [SEP] B-Citation [SEP] [ 33 ]","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Citation [SEP] [ 33 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825"
57,63,B-Application [SEP] REViGO,B-Citation [SEP] [ 34 ],148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Application [SEP] REViGO [SEP] B-Citation [SEP] [ 34 ]","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Citation [SEP] [ 34 ] [SEP] B-Application [SEP] REViGO"
57,61,B-Application [SEP] REViGO,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Application [SEP] REViGO [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825 [SEP] B-Application [SEP] REViGO"
57,6,B-Application [SEP] REViGO,B-Application [SEP] agriGO,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Application [SEP] REViGO [SEP] B-Application [SEP] agriGO","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Application [SEP] agriGO [SEP] B-Application [SEP] REViGO"
57,14,B-Application [SEP] REViGO,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Application [SEP] REViGO [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989 [SEP] B-Application [SEP] REViGO"
57,12,B-Application [SEP] REViGO,B-Developer [SEP] agriGO,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Application [SEP] REViGO [SEP] B-Developer [SEP] agriGO","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Developer [SEP] agriGO [SEP] B-Application [SEP] REViGO"
57,8,B-Application [SEP] REViGO,B-Version [SEP] 2 . 0,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Application [SEP] REViGO [SEP] B-Version [SEP] 2 . 0","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Application [SEP] REViGO"
57,16,B-Application [SEP] REViGO,B-Citation [SEP] [ 33 ],148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Application [SEP] REViGO [SEP] B-Citation [SEP] [ 33 ]","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Citation [SEP] [ 33 ] [SEP] B-Application [SEP] REViGO"
6,59,B-Application [SEP] agriGO,B-Application [SEP] REViGO,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Application [SEP] agriGO [SEP] B-Application [SEP] REViGO","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Application [SEP] REViGO [SEP] B-Application [SEP] agriGO"
6,63,B-Application [SEP] agriGO,B-Citation [SEP] [ 34 ],148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Application [SEP] agriGO [SEP] B-Citation [SEP] [ 34 ]","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Citation [SEP] [ 34 ] [SEP] B-Application [SEP] agriGO"
6,61,B-Application [SEP] agriGO,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Application [SEP] agriGO [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825 [SEP] B-Application [SEP] agriGO"
6,57,B-Application [SEP] agriGO,B-Application [SEP] REViGO,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Application [SEP] agriGO [SEP] B-Application [SEP] REViGO","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Application [SEP] REViGO [SEP] B-Application [SEP] agriGO"
6,14,B-Application [SEP] agriGO,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Application [SEP] agriGO [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989 [SEP] B-Application [SEP] agriGO"
6,12,B-Application [SEP] agriGO,B-Developer [SEP] agriGO,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Application [SEP] agriGO [SEP] B-Developer [SEP] agriGO","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Developer [SEP] agriGO [SEP] B-Application [SEP] agriGO"
6,8,B-Application [SEP] agriGO,B-Version [SEP] 2 . 0,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Application [SEP] agriGO [SEP] B-Version [SEP] 2 . 0","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Application [SEP] agriGO"
6,16,B-Application [SEP] agriGO,B-Citation [SEP] [ 33 ],148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Application [SEP] agriGO [SEP] B-Citation [SEP] [ 33 ]","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Citation [SEP] [ 33 ] [SEP] B-Application [SEP] agriGO"
14,59,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989,B-Application [SEP] REViGO,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989 [SEP] B-Application [SEP] REViGO","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Application [SEP] REViGO [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989"
14,63,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989,B-Citation [SEP] [ 34 ],148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989 [SEP] B-Citation [SEP] [ 34 ]","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Citation [SEP] [ 34 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989"
14,61,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989"
14,57,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989,B-Application [SEP] REViGO,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989 [SEP] B-Application [SEP] REViGO","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Application [SEP] REViGO [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989"
14,6,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989,B-Application [SEP] agriGO,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989 [SEP] B-Application [SEP] agriGO","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Application [SEP] agriGO [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989"
14,12,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989,B-Developer [SEP] agriGO,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989 [SEP] B-Developer [SEP] agriGO","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Developer [SEP] agriGO [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989"
14,8,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989,B-Version [SEP] 2 . 0,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989 [SEP] B-Version [SEP] 2 . 0","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Version [SEP] 2 . 0 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989"
14,16,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989,B-Citation [SEP] [ 33 ],148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989 [SEP] B-Citation [SEP] [ 33 ]","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Citation [SEP] [ 33 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989"
12,59,B-Developer [SEP] agriGO,B-Application [SEP] REViGO,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Developer [SEP] agriGO [SEP] B-Application [SEP] REViGO","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Application [SEP] REViGO [SEP] B-Developer [SEP] agriGO"
12,63,B-Developer [SEP] agriGO,B-Citation [SEP] [ 34 ],148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Developer [SEP] agriGO [SEP] B-Citation [SEP] [ 34 ]","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Citation [SEP] [ 34 ] [SEP] B-Developer [SEP] agriGO"
12,61,B-Developer [SEP] agriGO,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Developer [SEP] agriGO [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825 [SEP] B-Developer [SEP] agriGO"
12,57,B-Developer [SEP] agriGO,B-Application [SEP] REViGO,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Developer [SEP] agriGO [SEP] B-Application [SEP] REViGO","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Application [SEP] REViGO [SEP] B-Developer [SEP] agriGO"
12,6,B-Developer [SEP] agriGO,B-Application [SEP] agriGO,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Developer [SEP] agriGO [SEP] B-Application [SEP] agriGO","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Application [SEP] agriGO [SEP] B-Developer [SEP] agriGO"
12,14,B-Developer [SEP] agriGO,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Developer [SEP] agriGO [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989 [SEP] B-Developer [SEP] agriGO"
12,8,B-Developer [SEP] agriGO,B-Version [SEP] 2 . 0,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Developer [SEP] agriGO [SEP] B-Version [SEP] 2 . 0","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Developer [SEP] agriGO"
12,16,B-Developer [SEP] agriGO,B-Citation [SEP] [ 33 ],148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Developer [SEP] agriGO [SEP] B-Citation [SEP] [ 33 ]","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Citation [SEP] [ 33 ] [SEP] B-Developer [SEP] agriGO"
8,59,B-Version [SEP] 2 . 0,B-Application [SEP] REViGO,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Application [SEP] REViGO","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Application [SEP] REViGO [SEP] B-Version [SEP] 2 . 0"
8,63,B-Version [SEP] 2 . 0,B-Citation [SEP] [ 34 ],148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Citation [SEP] [ 34 ]","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Citation [SEP] [ 34 ] [SEP] B-Version [SEP] 2 . 0"
8,61,B-Version [SEP] 2 . 0,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Version [SEP] 2 . 0 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825 [SEP] B-Version [SEP] 2 . 0"
8,57,B-Version [SEP] 2 . 0,B-Application [SEP] REViGO,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Application [SEP] REViGO","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Application [SEP] REViGO [SEP] B-Version [SEP] 2 . 0"
8,6,B-Version [SEP] 2 . 0,B-Application [SEP] agriGO,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Application [SEP] agriGO","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Application [SEP] agriGO [SEP] B-Version [SEP] 2 . 0"
8,14,B-Version [SEP] 2 . 0,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Version [SEP] 2 . 0 [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989 [SEP] B-Version [SEP] 2 . 0"
8,12,B-Version [SEP] 2 . 0,B-Developer [SEP] agriGO,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Developer [SEP] agriGO","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Developer [SEP] agriGO [SEP] B-Version [SEP] 2 . 0"
8,16,B-Version [SEP] 2 . 0,B-Citation [SEP] [ 33 ],148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Citation [SEP] [ 33 ]","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Citation [SEP] [ 33 ] [SEP] B-Version [SEP] 2 . 0"
16,59,B-Citation [SEP] [ 33 ],B-Application [SEP] REViGO,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Citation [SEP] [ 33 ] [SEP] B-Application [SEP] REViGO","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Application [SEP] REViGO [SEP] B-Citation [SEP] [ 33 ]"
16,63,B-Citation [SEP] [ 33 ],B-Citation [SEP] [ 34 ],148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Citation [SEP] [ 33 ] [SEP] B-Citation [SEP] [ 34 ]","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Citation [SEP] [ 34 ] [SEP] B-Citation [SEP] [ 33 ]"
16,61,B-Citation [SEP] [ 33 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Citation [SEP] [ 33 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_005825 [SEP] B-Citation [SEP] [ 33 ]"
16,57,B-Citation [SEP] [ 33 ],B-Application [SEP] REViGO,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Citation [SEP] [ 33 ] [SEP] B-Application [SEP] REViGO","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Application [SEP] REViGO [SEP] B-Citation [SEP] [ 33 ]"
16,6,B-Citation [SEP] [ 33 ],B-Application [SEP] agriGO,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Citation [SEP] [ 33 ] [SEP] B-Application [SEP] agriGO","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Application [SEP] agriGO [SEP] B-Citation [SEP] [ 33 ]"
16,14,B-Citation [SEP] [ 33 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Citation [SEP] [ 33 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_006989 [SEP] B-Citation [SEP] [ 33 ]"
16,12,B-Citation [SEP] [ 33 ],B-Developer [SEP] agriGO,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Citation [SEP] [ 33 ] [SEP] B-Developer [SEP] agriGO","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Developer [SEP] agriGO [SEP] B-Citation [SEP] [ 33 ]"
16,8,B-Citation [SEP] [ 33 ],B-Version [SEP] 2 . 0,148,"Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) .","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Citation [SEP] [ 33 ] [SEP] B-Version [SEP] 2 . 0","Gene Ontology analysis was performed using agriGO v 2 . 0 ( agriGO , https://scicrunch.org/resolver/RRID:SCR_006989 ) [ 33 ] ( Fisher statistical test method ; Yekutieli Multi _ test adjustment method ; P < 0 . 05 ; and Plant GO slim ontology type ) ; data were visualized reduced in complexity and redundant GO terms using REViGO ( REViGO , https://scicrunch.org/resolver/RRID:SCR_005825 ) [ 34 ] with default parameters ( allowed similarity = 0 . 7 ; semantic similarity measure = SimRel ) . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Citation [SEP] [ 33 ]"
10,12,B-Application [SEP] AUGUSTUS,B-Application [SEP] Augustus,149,"We curated BraA . AG . a gene structure using AUGUSTUS ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 63 ] and Bra 013364 ( B . rapa genome V 1 . 5 ) gene information at the B . rapa database [ 46 ] .","We curated BraA . AG . a gene structure using AUGUSTUS ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 63 ] and Bra 013364 ( B . rapa genome V 1 . 5 ) gene information at the B . rapa database [ 46 ] . [SEP] B-Application [SEP] AUGUSTUS [SEP] B-Application [SEP] Augustus","We curated BraA . AG . a gene structure using AUGUSTUS ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 63 ] and Bra 013364 ( B . rapa genome V 1 . 5 ) gene information at the B . rapa database [ 46 ] . [SEP] B-Application [SEP] Augustus [SEP] B-Application [SEP] AUGUSTUS"
10,14,B-Application [SEP] AUGUSTUS,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_008417,149,"We curated BraA . AG . a gene structure using AUGUSTUS ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 63 ] and Bra 013364 ( B . rapa genome V 1 . 5 ) gene information at the B . rapa database [ 46 ] .","We curated BraA . AG . a gene structure using AUGUSTUS ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 63 ] and Bra 013364 ( B . rapa genome V 1 . 5 ) gene information at the B . rapa database [ 46 ] . [SEP] B-Application [SEP] AUGUSTUS [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_008417","We curated BraA . AG . a gene structure using AUGUSTUS ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 63 ] and Bra 013364 ( B . rapa genome V 1 . 5 ) gene information at the B . rapa database [ 46 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_008417 [SEP] B-Application [SEP] AUGUSTUS"
10,16,B-Application [SEP] AUGUSTUS,B-Citation [SEP] [ 63 ],149,"We curated BraA . AG . a gene structure using AUGUSTUS ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 63 ] and Bra 013364 ( B . rapa genome V 1 . 5 ) gene information at the B . rapa database [ 46 ] .","We curated BraA . AG . a gene structure using AUGUSTUS ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 63 ] and Bra 013364 ( B . rapa genome V 1 . 5 ) gene information at the B . rapa database [ 46 ] . [SEP] B-Application [SEP] AUGUSTUS [SEP] B-Citation [SEP] [ 63 ]","We curated BraA . AG . a gene structure using AUGUSTUS ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 63 ] and Bra 013364 ( B . rapa genome V 1 . 5 ) gene information at the B . rapa database [ 46 ] . [SEP] B-Citation [SEP] [ 63 ] [SEP] B-Application [SEP] AUGUSTUS"
12,10,B-Application [SEP] Augustus,B-Application [SEP] AUGUSTUS,149,"We curated BraA . AG . a gene structure using AUGUSTUS ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 63 ] and Bra 013364 ( B . rapa genome V 1 . 5 ) gene information at the B . rapa database [ 46 ] .","We curated BraA . AG . a gene structure using AUGUSTUS ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 63 ] and Bra 013364 ( B . rapa genome V 1 . 5 ) gene information at the B . rapa database [ 46 ] . [SEP] B-Application [SEP] Augustus [SEP] B-Application [SEP] AUGUSTUS","We curated BraA . AG . a gene structure using AUGUSTUS ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 63 ] and Bra 013364 ( B . rapa genome V 1 . 5 ) gene information at the B . rapa database [ 46 ] . [SEP] B-Application [SEP] AUGUSTUS [SEP] B-Application [SEP] Augustus"
12,14,B-Application [SEP] Augustus,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_008417,149,"We curated BraA . AG . a gene structure using AUGUSTUS ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 63 ] and Bra 013364 ( B . rapa genome V 1 . 5 ) gene information at the B . rapa database [ 46 ] .","We curated BraA . AG . a gene structure using AUGUSTUS ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 63 ] and Bra 013364 ( B . rapa genome V 1 . 5 ) gene information at the B . rapa database [ 46 ] . [SEP] B-Application [SEP] Augustus [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_008417","We curated BraA . AG . a gene structure using AUGUSTUS ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 63 ] and Bra 013364 ( B . rapa genome V 1 . 5 ) gene information at the B . rapa database [ 46 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_008417 [SEP] B-Application [SEP] Augustus"
12,16,B-Application [SEP] Augustus,B-Citation [SEP] [ 63 ],149,"We curated BraA . AG . a gene structure using AUGUSTUS ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 63 ] and Bra 013364 ( B . rapa genome V 1 . 5 ) gene information at the B . rapa database [ 46 ] .","We curated BraA . AG . a gene structure using AUGUSTUS ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 63 ] and Bra 013364 ( B . rapa genome V 1 . 5 ) gene information at the B . rapa database [ 46 ] . [SEP] B-Application [SEP] Augustus [SEP] B-Citation [SEP] [ 63 ]","We curated BraA . AG . a gene structure using AUGUSTUS ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 63 ] and Bra 013364 ( B . rapa genome V 1 . 5 ) gene information at the B . rapa database [ 46 ] . [SEP] B-Citation [SEP] [ 63 ] [SEP] B-Application [SEP] Augustus"
14,10,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_008417,B-Application [SEP] AUGUSTUS,149,"We curated BraA . AG . a gene structure using AUGUSTUS ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 63 ] and Bra 013364 ( B . rapa genome V 1 . 5 ) gene information at the B . rapa database [ 46 ] .","We curated BraA . AG . a gene structure using AUGUSTUS ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 63 ] and Bra 013364 ( B . rapa genome V 1 . 5 ) gene information at the B . rapa database [ 46 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_008417 [SEP] B-Application [SEP] AUGUSTUS","We curated BraA . AG . a gene structure using AUGUSTUS ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 63 ] and Bra 013364 ( B . rapa genome V 1 . 5 ) gene information at the B . rapa database [ 46 ] . [SEP] B-Application [SEP] AUGUSTUS [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_008417"
14,12,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_008417,B-Application [SEP] Augustus,149,"We curated BraA . AG . a gene structure using AUGUSTUS ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 63 ] and Bra 013364 ( B . rapa genome V 1 . 5 ) gene information at the B . rapa database [ 46 ] .","We curated BraA . AG . a gene structure using AUGUSTUS ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 63 ] and Bra 013364 ( B . rapa genome V 1 . 5 ) gene information at the B . rapa database [ 46 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_008417 [SEP] B-Application [SEP] Augustus","We curated BraA . AG . a gene structure using AUGUSTUS ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 63 ] and Bra 013364 ( B . rapa genome V 1 . 5 ) gene information at the B . rapa database [ 46 ] . [SEP] B-Application [SEP] Augustus [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_008417"
14,16,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_008417,B-Citation [SEP] [ 63 ],149,"We curated BraA . AG . a gene structure using AUGUSTUS ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 63 ] and Bra 013364 ( B . rapa genome V 1 . 5 ) gene information at the B . rapa database [ 46 ] .","We curated BraA . AG . a gene structure using AUGUSTUS ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 63 ] and Bra 013364 ( B . rapa genome V 1 . 5 ) gene information at the B . rapa database [ 46 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_008417 [SEP] B-Citation [SEP] [ 63 ]","We curated BraA . AG . a gene structure using AUGUSTUS ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 63 ] and Bra 013364 ( B . rapa genome V 1 . 5 ) gene information at the B . rapa database [ 46 ] . [SEP] B-Citation [SEP] [ 63 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_008417"
16,10,B-Citation [SEP] [ 63 ],B-Application [SEP] AUGUSTUS,149,"We curated BraA . AG . a gene structure using AUGUSTUS ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 63 ] and Bra 013364 ( B . rapa genome V 1 . 5 ) gene information at the B . rapa database [ 46 ] .","We curated BraA . AG . a gene structure using AUGUSTUS ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 63 ] and Bra 013364 ( B . rapa genome V 1 . 5 ) gene information at the B . rapa database [ 46 ] . [SEP] B-Citation [SEP] [ 63 ] [SEP] B-Application [SEP] AUGUSTUS","We curated BraA . AG . a gene structure using AUGUSTUS ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 63 ] and Bra 013364 ( B . rapa genome V 1 . 5 ) gene information at the B . rapa database [ 46 ] . [SEP] B-Application [SEP] AUGUSTUS [SEP] B-Citation [SEP] [ 63 ]"
16,12,B-Citation [SEP] [ 63 ],B-Application [SEP] Augustus,149,"We curated BraA . AG . a gene structure using AUGUSTUS ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 63 ] and Bra 013364 ( B . rapa genome V 1 . 5 ) gene information at the B . rapa database [ 46 ] .","We curated BraA . AG . a gene structure using AUGUSTUS ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 63 ] and Bra 013364 ( B . rapa genome V 1 . 5 ) gene information at the B . rapa database [ 46 ] . [SEP] B-Citation [SEP] [ 63 ] [SEP] B-Application [SEP] Augustus","We curated BraA . AG . a gene structure using AUGUSTUS ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 63 ] and Bra 013364 ( B . rapa genome V 1 . 5 ) gene information at the B . rapa database [ 46 ] . [SEP] B-Application [SEP] Augustus [SEP] B-Citation [SEP] [ 63 ]"
16,14,B-Citation [SEP] [ 63 ],B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_008417,149,"We curated BraA . AG . a gene structure using AUGUSTUS ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 63 ] and Bra 013364 ( B . rapa genome V 1 . 5 ) gene information at the B . rapa database [ 46 ] .","We curated BraA . AG . a gene structure using AUGUSTUS ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 63 ] and Bra 013364 ( B . rapa genome V 1 . 5 ) gene information at the B . rapa database [ 46 ] . [SEP] B-Citation [SEP] [ 63 ] [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_008417","We curated BraA . AG . a gene structure using AUGUSTUS ( Augustus , https://scicrunch.org/resolver/RRID:SCR_008417 ) [ 63 ] and Bra 013364 ( B . rapa genome V 1 . 5 ) gene information at the B . rapa database [ 46 ] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_008417 [SEP] B-Citation [SEP] [ 63 ]"
47,30,B-Citation [SEP] publication [ 22,B-URL [SEP] repository,150,"Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] .","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Citation [SEP] publication [ 22 [SEP] B-URL [SEP] repository","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-URL [SEP] repository [SEP] B-Citation [SEP] publication [ 22"
47,28,B-Citation [SEP] publication [ 22,B-Application [SEP] the,150,"Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] .","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Citation [SEP] publication [ 22 [SEP] B-Application [SEP] the","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Application [SEP] the [SEP] B-Citation [SEP] publication [ 22"
47,37,B-Citation [SEP] publication [ 22,B-Application [SEP] a,150,"Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] .","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Citation [SEP] publication [ 22 [SEP] B-Application [SEP] a","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Application [SEP] a [SEP] B-Citation [SEP] publication [ 22"
47,14,B-Citation [SEP] publication [ 22,B-Application [SEP] the,150,"Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] .","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Citation [SEP] publication [ 22 [SEP] B-Application [SEP] the","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Application [SEP] the [SEP] B-Citation [SEP] publication [ 22"
47,6,B-Citation [SEP] publication [ 22,B-Application [SEP] the,150,"Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] .","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Citation [SEP] publication [ 22 [SEP] B-Application [SEP] the","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Application [SEP] the [SEP] B-Citation [SEP] publication [ 22"
47,16,B-Citation [SEP] publication [ 22,B-PlugIn [SEP] /,150,"Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] .","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Citation [SEP] publication [ 22 [SEP] B-PlugIn [SEP] /","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-PlugIn [SEP] / [SEP] B-Citation [SEP] publication [ 22"
30,47,B-URL [SEP] repository,B-Citation [SEP] publication [ 22,150,"Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] .","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-URL [SEP] repository [SEP] B-Citation [SEP] publication [ 22","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Citation [SEP] publication [ 22 [SEP] B-URL [SEP] repository"
30,28,B-URL [SEP] repository,B-Application [SEP] the,150,"Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] .","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-URL [SEP] repository [SEP] B-Application [SEP] the","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Application [SEP] the [SEP] B-URL [SEP] repository"
30,37,B-URL [SEP] repository,B-Application [SEP] a,150,"Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] .","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-URL [SEP] repository [SEP] B-Application [SEP] a","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Application [SEP] a [SEP] B-URL [SEP] repository"
30,14,B-URL [SEP] repository,B-Application [SEP] the,150,"Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] .","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-URL [SEP] repository [SEP] B-Application [SEP] the","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Application [SEP] the [SEP] B-URL [SEP] repository"
30,6,B-URL [SEP] repository,B-Application [SEP] the,150,"Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] .","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-URL [SEP] repository [SEP] B-Application [SEP] the","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Application [SEP] the [SEP] B-URL [SEP] repository"
30,16,B-URL [SEP] repository,B-PlugIn [SEP] /,150,"Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] .","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-URL [SEP] repository [SEP] B-PlugIn [SEP] /","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-PlugIn [SEP] / [SEP] B-URL [SEP] repository"
28,47,B-Application [SEP] the,B-Citation [SEP] publication [ 22,150,"Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] .","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Application [SEP] the [SEP] B-Citation [SEP] publication [ 22","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Citation [SEP] publication [ 22 [SEP] B-Application [SEP] the"
28,30,B-Application [SEP] the,B-URL [SEP] repository,150,"Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] .","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Application [SEP] the [SEP] B-URL [SEP] repository","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-URL [SEP] repository [SEP] B-Application [SEP] the"
28,37,B-Application [SEP] the,B-Application [SEP] a,150,"Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] .","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Application [SEP] the [SEP] B-Application [SEP] a","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Application [SEP] a [SEP] B-Application [SEP] the"
28,16,B-Application [SEP] the,B-PlugIn [SEP] /,150,"Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] .","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Application [SEP] the [SEP] B-PlugIn [SEP] /","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-PlugIn [SEP] / [SEP] B-Application [SEP] the"
37,47,B-Application [SEP] a,B-Citation [SEP] publication [ 22,150,"Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] .","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Application [SEP] a [SEP] B-Citation [SEP] publication [ 22","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Citation [SEP] publication [ 22 [SEP] B-Application [SEP] a"
37,30,B-Application [SEP] a,B-URL [SEP] repository,150,"Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] .","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Application [SEP] a [SEP] B-URL [SEP] repository","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-URL [SEP] repository [SEP] B-Application [SEP] a"
37,28,B-Application [SEP] a,B-Application [SEP] the,150,"Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] .","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Application [SEP] a [SEP] B-Application [SEP] the","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Application [SEP] the [SEP] B-Application [SEP] a"
37,14,B-Application [SEP] a,B-Application [SEP] the,150,"Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] .","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Application [SEP] a [SEP] B-Application [SEP] the","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Application [SEP] the [SEP] B-Application [SEP] a"
37,6,B-Application [SEP] a,B-Application [SEP] the,150,"Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] .","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Application [SEP] a [SEP] B-Application [SEP] the","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Application [SEP] the [SEP] B-Application [SEP] a"
37,16,B-Application [SEP] a,B-PlugIn [SEP] /,150,"Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] .","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Application [SEP] a [SEP] B-PlugIn [SEP] /","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-PlugIn [SEP] / [SEP] B-Application [SEP] a"
14,47,B-Application [SEP] the,B-Citation [SEP] publication [ 22,150,"Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] .","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Application [SEP] the [SEP] B-Citation [SEP] publication [ 22","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Citation [SEP] publication [ 22 [SEP] B-Application [SEP] the"
14,30,B-Application [SEP] the,B-URL [SEP] repository,150,"Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] .","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Application [SEP] the [SEP] B-URL [SEP] repository","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-URL [SEP] repository [SEP] B-Application [SEP] the"
14,37,B-Application [SEP] the,B-Application [SEP] a,150,"Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] .","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Application [SEP] the [SEP] B-Application [SEP] a","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Application [SEP] a [SEP] B-Application [SEP] the"
14,16,B-Application [SEP] the,B-PlugIn [SEP] /,150,"Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] .","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Application [SEP] the [SEP] B-PlugIn [SEP] /","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-PlugIn [SEP] / [SEP] B-Application [SEP] the"
6,47,B-Application [SEP] the,B-Citation [SEP] publication [ 22,150,"Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] .","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Application [SEP] the [SEP] B-Citation [SEP] publication [ 22","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Citation [SEP] publication [ 22 [SEP] B-Application [SEP] the"
6,30,B-Application [SEP] the,B-URL [SEP] repository,150,"Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] .","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Application [SEP] the [SEP] B-URL [SEP] repository","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-URL [SEP] repository [SEP] B-Application [SEP] the"
6,37,B-Application [SEP] the,B-Application [SEP] a,150,"Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] .","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Application [SEP] the [SEP] B-Application [SEP] a","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Application [SEP] a [SEP] B-Application [SEP] the"
6,16,B-Application [SEP] the,B-PlugIn [SEP] /,150,"Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] .","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Application [SEP] the [SEP] B-PlugIn [SEP] /","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-PlugIn [SEP] / [SEP] B-Application [SEP] the"
16,47,B-PlugIn [SEP] /,B-Citation [SEP] publication [ 22,150,"Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] .","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-PlugIn [SEP] / [SEP] B-Citation [SEP] publication [ 22","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Citation [SEP] publication [ 22 [SEP] B-PlugIn [SEP] /"
16,30,B-PlugIn [SEP] /,B-URL [SEP] repository,150,"Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] .","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-PlugIn [SEP] / [SEP] B-URL [SEP] repository","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-URL [SEP] repository [SEP] B-PlugIn [SEP] /"
16,28,B-PlugIn [SEP] /,B-Application [SEP] the,150,"Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] .","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-PlugIn [SEP] / [SEP] B-Application [SEP] the","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Application [SEP] the [SEP] B-PlugIn [SEP] /"
16,37,B-PlugIn [SEP] /,B-Application [SEP] a,150,"Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] .","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-PlugIn [SEP] / [SEP] B-Application [SEP] a","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Application [SEP] a [SEP] B-PlugIn [SEP] /"
16,14,B-PlugIn [SEP] /,B-Application [SEP] the,150,"Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] .","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-PlugIn [SEP] / [SEP] B-Application [SEP] the","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Application [SEP] the [SEP] B-PlugIn [SEP] /"
16,6,B-PlugIn [SEP] /,B-Application [SEP] the,150,"Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] .","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-PlugIn [SEP] / [SEP] B-Application [SEP] the","Latest versions of the components of the REA pipeline , and instructions to deploy the Galaxy / Jupyter containers and run the analysis , can be found in the GitHub repository https://github.com/wilkinsonlab/epigenomics_pipeline ; this is associated with a Zenodo release to match the configuration used in this publication [ 22 ] . [SEP] B-Application [SEP] the [SEP] B-PlugIn [SEP] /"
1,6,B-Application [SEP] REA pipeline,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017544,151,"The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] REA pipeline [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017544","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017544 [SEP] B-Application [SEP] REA pipeline"
1,8,B-Application [SEP] REA pipeline,B-PlugIn [SEP] biotools : Epigenomics _ Workflow,151,"The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] REA pipeline [SEP] B-PlugIn [SEP] biotools : Epigenomics _ Workflow","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-PlugIn [SEP] biotools : Epigenomics _ Workflow [SEP] B-Application [SEP] REA pipeline"
1,16,B-Application [SEP] REA pipeline,B-Application [SEP] Galaxy,151,"The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] REA pipeline [SEP] B-Application [SEP] Galaxy","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] Galaxy [SEP] B-Application [SEP] REA pipeline"
1,20,B-Application [SEP] REA pipeline,B-Application [SEP] Jupyter at SciCrunch and,151,"The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] REA pipeline [SEP] B-Application [SEP] Jupyter at SciCrunch and","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] Jupyter at SciCrunch and [SEP] B-Application [SEP] REA pipeline"
1,24,B-Application [SEP] REA pipeline,B-URL [SEP] bio,151,"The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] REA pipeline [SEP] B-URL [SEP] bio","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-URL [SEP] bio [SEP] B-Application [SEP] REA pipeline"
1,25,B-Application [SEP] REA pipeline,B-Application [SEP] .,151,"The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] REA pipeline [SEP] B-Application [SEP] .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] . [SEP] B-Application [SEP] REA pipeline"
6,1,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017544,B-Application [SEP] REA pipeline,151,"The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017544 [SEP] B-Application [SEP] REA pipeline","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] REA pipeline [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017544"
6,8,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017544,B-PlugIn [SEP] biotools : Epigenomics _ Workflow,151,"The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017544 [SEP] B-PlugIn [SEP] biotools : Epigenomics _ Workflow","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-PlugIn [SEP] biotools : Epigenomics _ Workflow [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017544"
6,16,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017544,B-Application [SEP] Galaxy,151,"The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017544 [SEP] B-Application [SEP] Galaxy","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] Galaxy [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017544"
6,20,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017544,B-Application [SEP] Jupyter at SciCrunch and,151,"The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017544 [SEP] B-Application [SEP] Jupyter at SciCrunch and","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] Jupyter at SciCrunch and [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017544"
6,24,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017544,B-URL [SEP] bio,151,"The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017544 [SEP] B-URL [SEP] bio","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-URL [SEP] bio [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017544"
6,25,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017544,B-Application [SEP] .,151,"The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017544 [SEP] B-Application [SEP] .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017544"
8,1,B-PlugIn [SEP] biotools : Epigenomics _ Workflow,B-Application [SEP] REA pipeline,151,"The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-PlugIn [SEP] biotools : Epigenomics _ Workflow [SEP] B-Application [SEP] REA pipeline","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] REA pipeline [SEP] B-PlugIn [SEP] biotools : Epigenomics _ Workflow"
8,6,B-PlugIn [SEP] biotools : Epigenomics _ Workflow,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017544,151,"The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-PlugIn [SEP] biotools : Epigenomics _ Workflow [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017544","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017544 [SEP] B-PlugIn [SEP] biotools : Epigenomics _ Workflow"
8,16,B-PlugIn [SEP] biotools : Epigenomics _ Workflow,B-Application [SEP] Galaxy,151,"The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-PlugIn [SEP] biotools : Epigenomics _ Workflow [SEP] B-Application [SEP] Galaxy","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] Galaxy [SEP] B-PlugIn [SEP] biotools : Epigenomics _ Workflow"
8,20,B-PlugIn [SEP] biotools : Epigenomics _ Workflow,B-Application [SEP] Jupyter at SciCrunch and,151,"The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-PlugIn [SEP] biotools : Epigenomics _ Workflow [SEP] B-Application [SEP] Jupyter at SciCrunch and","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] Jupyter at SciCrunch and [SEP] B-PlugIn [SEP] biotools : Epigenomics _ Workflow"
8,24,B-PlugIn [SEP] biotools : Epigenomics _ Workflow,B-URL [SEP] bio,151,"The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-PlugIn [SEP] biotools : Epigenomics _ Workflow [SEP] B-URL [SEP] bio","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-URL [SEP] bio [SEP] B-PlugIn [SEP] biotools : Epigenomics _ Workflow"
8,25,B-PlugIn [SEP] biotools : Epigenomics _ Workflow,B-Application [SEP] .,151,"The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-PlugIn [SEP] biotools : Epigenomics _ Workflow [SEP] B-Application [SEP] .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] . [SEP] B-PlugIn [SEP] biotools : Epigenomics _ Workflow"
16,1,B-Application [SEP] Galaxy,B-Application [SEP] REA pipeline,151,"The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] Galaxy [SEP] B-Application [SEP] REA pipeline","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] REA pipeline [SEP] B-Application [SEP] Galaxy"
16,6,B-Application [SEP] Galaxy,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017544,151,"The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] Galaxy [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017544","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017544 [SEP] B-Application [SEP] Galaxy"
16,8,B-Application [SEP] Galaxy,B-PlugIn [SEP] biotools : Epigenomics _ Workflow,151,"The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] Galaxy [SEP] B-PlugIn [SEP] biotools : Epigenomics _ Workflow","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-PlugIn [SEP] biotools : Epigenomics _ Workflow [SEP] B-Application [SEP] Galaxy"
16,20,B-Application [SEP] Galaxy,B-Application [SEP] Jupyter at SciCrunch and,151,"The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] Galaxy [SEP] B-Application [SEP] Jupyter at SciCrunch and","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] Jupyter at SciCrunch and [SEP] B-Application [SEP] Galaxy"
16,24,B-Application [SEP] Galaxy,B-URL [SEP] bio,151,"The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] Galaxy [SEP] B-URL [SEP] bio","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-URL [SEP] bio [SEP] B-Application [SEP] Galaxy"
16,25,B-Application [SEP] Galaxy,B-Application [SEP] .,151,"The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] Galaxy [SEP] B-Application [SEP] .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] . [SEP] B-Application [SEP] Galaxy"
20,1,B-Application [SEP] Jupyter at SciCrunch and,B-Application [SEP] REA pipeline,151,"The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] Jupyter at SciCrunch and [SEP] B-Application [SEP] REA pipeline","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] REA pipeline [SEP] B-Application [SEP] Jupyter at SciCrunch and"
20,6,B-Application [SEP] Jupyter at SciCrunch and,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017544,151,"The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] Jupyter at SciCrunch and [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017544","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017544 [SEP] B-Application [SEP] Jupyter at SciCrunch and"
20,8,B-Application [SEP] Jupyter at SciCrunch and,B-PlugIn [SEP] biotools : Epigenomics _ Workflow,151,"The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] Jupyter at SciCrunch and [SEP] B-PlugIn [SEP] biotools : Epigenomics _ Workflow","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-PlugIn [SEP] biotools : Epigenomics _ Workflow [SEP] B-Application [SEP] Jupyter at SciCrunch and"
20,16,B-Application [SEP] Jupyter at SciCrunch and,B-Application [SEP] Galaxy,151,"The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] Jupyter at SciCrunch and [SEP] B-Application [SEP] Galaxy","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] Galaxy [SEP] B-Application [SEP] Jupyter at SciCrunch and"
20,24,B-Application [SEP] Jupyter at SciCrunch and,B-URL [SEP] bio,151,"The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] Jupyter at SciCrunch and [SEP] B-URL [SEP] bio","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-URL [SEP] bio [SEP] B-Application [SEP] Jupyter at SciCrunch and"
20,25,B-Application [SEP] Jupyter at SciCrunch and,B-Application [SEP] .,151,"The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] Jupyter at SciCrunch and [SEP] B-Application [SEP] .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] . [SEP] B-Application [SEP] Jupyter at SciCrunch and"
24,1,B-URL [SEP] bio,B-Application [SEP] REA pipeline,151,"The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-URL [SEP] bio [SEP] B-Application [SEP] REA pipeline","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] REA pipeline [SEP] B-URL [SEP] bio"
24,6,B-URL [SEP] bio,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017544,151,"The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-URL [SEP] bio [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017544","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017544 [SEP] B-URL [SEP] bio"
24,8,B-URL [SEP] bio,B-PlugIn [SEP] biotools : Epigenomics _ Workflow,151,"The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-URL [SEP] bio [SEP] B-PlugIn [SEP] biotools : Epigenomics _ Workflow","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-PlugIn [SEP] biotools : Epigenomics _ Workflow [SEP] B-URL [SEP] bio"
24,16,B-URL [SEP] bio,B-Application [SEP] Galaxy,151,"The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-URL [SEP] bio [SEP] B-Application [SEP] Galaxy","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] Galaxy [SEP] B-URL [SEP] bio"
24,20,B-URL [SEP] bio,B-Application [SEP] Jupyter at SciCrunch and,151,"The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-URL [SEP] bio [SEP] B-Application [SEP] Jupyter at SciCrunch and","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] Jupyter at SciCrunch and [SEP] B-URL [SEP] bio"
24,25,B-URL [SEP] bio,B-Application [SEP] .,151,"The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-URL [SEP] bio [SEP] B-Application [SEP] .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] . [SEP] B-URL [SEP] bio"
25,1,B-Application [SEP] .,B-Application [SEP] REA pipeline,151,"The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] . [SEP] B-Application [SEP] REA pipeline","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] REA pipeline [SEP] B-Application [SEP] ."
25,6,B-Application [SEP] .,B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017544,151,"The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017544","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-URL [SEP] https://scicrunch.org/resolver/RRID:SCR_017544 [SEP] B-Application [SEP] ."
25,8,B-Application [SEP] .,B-PlugIn [SEP] biotools : Epigenomics _ Workflow,151,"The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] . [SEP] B-PlugIn [SEP] biotools : Epigenomics _ Workflow","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-PlugIn [SEP] biotools : Epigenomics _ Workflow [SEP] B-Application [SEP] ."
25,16,B-Application [SEP] .,B-Application [SEP] Galaxy,151,"The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] . [SEP] B-Application [SEP] Galaxy","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] Galaxy [SEP] B-Application [SEP] ."
25,20,B-Application [SEP] .,B-Application [SEP] Jupyter at SciCrunch and,151,"The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] . [SEP] B-Application [SEP] Jupyter at SciCrunch and","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] Jupyter at SciCrunch and [SEP] B-Application [SEP] ."
25,24,B-Application [SEP] .,B-URL [SEP] bio,151,"The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively .","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-Application [SEP] . [SEP] B-URL [SEP] bio","The REA pipeline is registered as https://scicrunch.org/resolver/RRID:SCR_017544 and biotools : Epigenomics _ Workflow _ on _ Galaxy _ and _ Jupyter at SciCrunch and bio . tools databases , respectively . [SEP] B-URL [SEP] bio [SEP] B-Application [SEP] ."
179,187,B-Application [SEP] PRC 2,B-Application [SEP] REA,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] PRC 2 [SEP] B-Application [SEP] REA","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] REA [SEP] B-Application [SEP] PRC 2"
179,182,B-Application [SEP] PRC 2,B-AlternativeName [SEP] Polycomb repressive complex 2,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] PRC 2 [SEP] B-AlternativeName [SEP] Polycomb repressive complex 2","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] Polycomb repressive complex 2 [SEP] B-Application [SEP] PRC 2"
179,189,B-Application [SEP] PRC 2,B-AlternativeName [SEP] Reproducible Epigenomic Analysis,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] PRC 2 [SEP] B-AlternativeName [SEP] Reproducible Epigenomic Analysis","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] Reproducible Epigenomic Analysis [SEP] B-Application [SEP] PRC 2"
179,173,B-Application [SEP] PRC 2,B-AlternativeName [SEP] National Center for Biotechnology Information,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] PRC 2 [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-Application [SEP] PRC 2"
179,155,B-Application [SEP] PRC 2,B-Application [SEP] MACS,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] PRC 2 [SEP] B-Application [SEP] MACS","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] MACS [SEP] B-Application [SEP] PRC 2"
179,157,B-Application [SEP] PRC 2,B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] PRC 2 [SEP] B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq [SEP] B-Application [SEP] PRC 2"
179,116,B-Application [SEP] PRC 2,B-AlternativeName [SEP] integrative genomics viewer,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] PRC 2 [SEP] B-AlternativeName [SEP] integrative genomics viewer","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] integrative genomics viewer [SEP] B-Application [SEP] PRC 2"
179,114,B-Application [SEP] PRC 2,B-Application [SEP] IGV,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] PRC 2 [SEP] B-Application [SEP] IGV","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] IGV [SEP] B-Application [SEP] PRC 2"
179,171,B-Application [SEP] PRC 2,B-Application [SEP] NCBI,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] PRC 2 [SEP] B-Application [SEP] NCBI","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] NCBI [SEP] B-Application [SEP] PRC 2"
187,179,B-Application [SEP] REA,B-Application [SEP] PRC 2,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] REA [SEP] B-Application [SEP] PRC 2","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] PRC 2 [SEP] B-Application [SEP] REA"
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187,155,B-Application [SEP] REA,B-Application [SEP] MACS,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] REA [SEP] B-Application [SEP] MACS","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] MACS [SEP] B-Application [SEP] REA"
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182,187,B-AlternativeName [SEP] Polycomb repressive complex 2,B-Application [SEP] REA,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] Polycomb repressive complex 2 [SEP] B-Application [SEP] REA","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] REA [SEP] B-AlternativeName [SEP] Polycomb repressive complex 2"
182,189,B-AlternativeName [SEP] Polycomb repressive complex 2,B-AlternativeName [SEP] Reproducible Epigenomic Analysis,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] Polycomb repressive complex 2 [SEP] B-AlternativeName [SEP] Reproducible Epigenomic Analysis","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] Reproducible Epigenomic Analysis [SEP] B-AlternativeName [SEP] Polycomb repressive complex 2"
182,173,B-AlternativeName [SEP] Polycomb repressive complex 2,B-AlternativeName [SEP] National Center for Biotechnology Information,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] Polycomb repressive complex 2 [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-AlternativeName [SEP] Polycomb repressive complex 2"
182,155,B-AlternativeName [SEP] Polycomb repressive complex 2,B-Application [SEP] MACS,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] Polycomb repressive complex 2 [SEP] B-Application [SEP] MACS","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] MACS [SEP] B-AlternativeName [SEP] Polycomb repressive complex 2"
182,157,B-AlternativeName [SEP] Polycomb repressive complex 2,B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] Polycomb repressive complex 2 [SEP] B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq [SEP] B-AlternativeName [SEP] Polycomb repressive complex 2"
182,116,B-AlternativeName [SEP] Polycomb repressive complex 2,B-AlternativeName [SEP] integrative genomics viewer,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] Polycomb repressive complex 2 [SEP] B-AlternativeName [SEP] integrative genomics viewer","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] integrative genomics viewer [SEP] B-AlternativeName [SEP] Polycomb repressive complex 2"
182,114,B-AlternativeName [SEP] Polycomb repressive complex 2,B-Application [SEP] IGV,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] Polycomb repressive complex 2 [SEP] B-Application [SEP] IGV","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] IGV [SEP] B-AlternativeName [SEP] Polycomb repressive complex 2"
182,171,B-AlternativeName [SEP] Polycomb repressive complex 2,B-Application [SEP] NCBI,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] Polycomb repressive complex 2 [SEP] B-Application [SEP] NCBI","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] NCBI [SEP] B-AlternativeName [SEP] Polycomb repressive complex 2"
189,179,B-AlternativeName [SEP] Reproducible Epigenomic Analysis,B-Application [SEP] PRC 2,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] Reproducible Epigenomic Analysis [SEP] B-Application [SEP] PRC 2","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] PRC 2 [SEP] B-AlternativeName [SEP] Reproducible Epigenomic Analysis"
189,187,B-AlternativeName [SEP] Reproducible Epigenomic Analysis,B-Application [SEP] REA,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] Reproducible Epigenomic Analysis [SEP] B-Application [SEP] REA","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] REA [SEP] B-AlternativeName [SEP] Reproducible Epigenomic Analysis"
189,182,B-AlternativeName [SEP] Reproducible Epigenomic Analysis,B-AlternativeName [SEP] Polycomb repressive complex 2,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] Reproducible Epigenomic Analysis [SEP] B-AlternativeName [SEP] Polycomb repressive complex 2","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] Polycomb repressive complex 2 [SEP] B-AlternativeName [SEP] Reproducible Epigenomic Analysis"
189,173,B-AlternativeName [SEP] Reproducible Epigenomic Analysis,B-AlternativeName [SEP] National Center for Biotechnology Information,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] Reproducible Epigenomic Analysis [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-AlternativeName [SEP] Reproducible Epigenomic Analysis"
189,155,B-AlternativeName [SEP] Reproducible Epigenomic Analysis,B-Application [SEP] MACS,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] Reproducible Epigenomic Analysis [SEP] B-Application [SEP] MACS","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] MACS [SEP] B-AlternativeName [SEP] Reproducible Epigenomic Analysis"
189,157,B-AlternativeName [SEP] Reproducible Epigenomic Analysis,B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] Reproducible Epigenomic Analysis [SEP] B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq [SEP] B-AlternativeName [SEP] Reproducible Epigenomic Analysis"
189,116,B-AlternativeName [SEP] Reproducible Epigenomic Analysis,B-AlternativeName [SEP] integrative genomics viewer,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] Reproducible Epigenomic Analysis [SEP] B-AlternativeName [SEP] integrative genomics viewer","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] integrative genomics viewer [SEP] B-AlternativeName [SEP] Reproducible Epigenomic Analysis"
189,114,B-AlternativeName [SEP] Reproducible Epigenomic Analysis,B-Application [SEP] IGV,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] Reproducible Epigenomic Analysis [SEP] B-Application [SEP] IGV","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] IGV [SEP] B-AlternativeName [SEP] Reproducible Epigenomic Analysis"
189,171,B-AlternativeName [SEP] Reproducible Epigenomic Analysis,B-Application [SEP] NCBI,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] Reproducible Epigenomic Analysis [SEP] B-Application [SEP] NCBI","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] NCBI [SEP] B-AlternativeName [SEP] Reproducible Epigenomic Analysis"
173,179,B-AlternativeName [SEP] National Center for Biotechnology Information,B-Application [SEP] PRC 2,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-Application [SEP] PRC 2","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] PRC 2 [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information"
173,187,B-AlternativeName [SEP] National Center for Biotechnology Information,B-Application [SEP] REA,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-Application [SEP] REA","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] REA [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information"
173,182,B-AlternativeName [SEP] National Center for Biotechnology Information,B-AlternativeName [SEP] Polycomb repressive complex 2,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-AlternativeName [SEP] Polycomb repressive complex 2","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] Polycomb repressive complex 2 [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information"
173,189,B-AlternativeName [SEP] National Center for Biotechnology Information,B-AlternativeName [SEP] Reproducible Epigenomic Analysis,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-AlternativeName [SEP] Reproducible Epigenomic Analysis","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] Reproducible Epigenomic Analysis [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information"
173,155,B-AlternativeName [SEP] National Center for Biotechnology Information,B-Application [SEP] MACS,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-Application [SEP] MACS","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] MACS [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information"
173,157,B-AlternativeName [SEP] National Center for Biotechnology Information,B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information"
173,116,B-AlternativeName [SEP] National Center for Biotechnology Information,B-AlternativeName [SEP] integrative genomics viewer,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-AlternativeName [SEP] integrative genomics viewer","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] integrative genomics viewer [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information"
173,114,B-AlternativeName [SEP] National Center for Biotechnology Information,B-Application [SEP] IGV,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-Application [SEP] IGV","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] IGV [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information"
173,171,B-AlternativeName [SEP] National Center for Biotechnology Information,B-Application [SEP] NCBI,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-Application [SEP] NCBI","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] NCBI [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information"
155,179,B-Application [SEP] MACS,B-Application [SEP] PRC 2,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] MACS [SEP] B-Application [SEP] PRC 2","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] PRC 2 [SEP] B-Application [SEP] MACS"
155,187,B-Application [SEP] MACS,B-Application [SEP] REA,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] MACS [SEP] B-Application [SEP] REA","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] REA [SEP] B-Application [SEP] MACS"
155,182,B-Application [SEP] MACS,B-AlternativeName [SEP] Polycomb repressive complex 2,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] MACS [SEP] B-AlternativeName [SEP] Polycomb repressive complex 2","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] Polycomb repressive complex 2 [SEP] B-Application [SEP] MACS"
155,189,B-Application [SEP] MACS,B-AlternativeName [SEP] Reproducible Epigenomic Analysis,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] MACS [SEP] B-AlternativeName [SEP] Reproducible Epigenomic Analysis","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] Reproducible Epigenomic Analysis [SEP] B-Application [SEP] MACS"
155,173,B-Application [SEP] MACS,B-AlternativeName [SEP] National Center for Biotechnology Information,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] MACS [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-Application [SEP] MACS"
155,157,B-Application [SEP] MACS,B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] MACS [SEP] B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq [SEP] B-Application [SEP] MACS"
155,116,B-Application [SEP] MACS,B-AlternativeName [SEP] integrative genomics viewer,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] MACS [SEP] B-AlternativeName [SEP] integrative genomics viewer","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] integrative genomics viewer [SEP] B-Application [SEP] MACS"
155,114,B-Application [SEP] MACS,B-Application [SEP] IGV,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] MACS [SEP] B-Application [SEP] IGV","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] IGV [SEP] B-Application [SEP] MACS"
155,171,B-Application [SEP] MACS,B-Application [SEP] NCBI,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] MACS [SEP] B-Application [SEP] NCBI","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] NCBI [SEP] B-Application [SEP] MACS"
157,179,B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq,B-Application [SEP] PRC 2,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq [SEP] B-Application [SEP] PRC 2","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] PRC 2 [SEP] B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq"
157,187,B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq,B-Application [SEP] REA,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq [SEP] B-Application [SEP] REA","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] REA [SEP] B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq"
157,182,B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq,B-AlternativeName [SEP] Polycomb repressive complex 2,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq [SEP] B-AlternativeName [SEP] Polycomb repressive complex 2","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] Polycomb repressive complex 2 [SEP] B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq"
157,189,B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq,B-AlternativeName [SEP] Reproducible Epigenomic Analysis,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq [SEP] B-AlternativeName [SEP] Reproducible Epigenomic Analysis","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] Reproducible Epigenomic Analysis [SEP] B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq"
157,173,B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq,B-AlternativeName [SEP] National Center for Biotechnology Information,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq"
157,155,B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq,B-Application [SEP] MACS,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq [SEP] B-Application [SEP] MACS","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] MACS [SEP] B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq"
157,116,B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq,B-AlternativeName [SEP] integrative genomics viewer,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq [SEP] B-AlternativeName [SEP] integrative genomics viewer","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] integrative genomics viewer [SEP] B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq"
157,114,B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq,B-Application [SEP] IGV,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq [SEP] B-Application [SEP] IGV","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] IGV [SEP] B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq"
157,171,B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq,B-Application [SEP] NCBI,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq [SEP] B-Application [SEP] NCBI","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] NCBI [SEP] B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq"
116,179,B-AlternativeName [SEP] integrative genomics viewer,B-Application [SEP] PRC 2,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] integrative genomics viewer [SEP] B-Application [SEP] PRC 2","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] PRC 2 [SEP] B-AlternativeName [SEP] integrative genomics viewer"
116,187,B-AlternativeName [SEP] integrative genomics viewer,B-Application [SEP] REA,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] integrative genomics viewer [SEP] B-Application [SEP] REA","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] REA [SEP] B-AlternativeName [SEP] integrative genomics viewer"
116,182,B-AlternativeName [SEP] integrative genomics viewer,B-AlternativeName [SEP] Polycomb repressive complex 2,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] integrative genomics viewer [SEP] B-AlternativeName [SEP] Polycomb repressive complex 2","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] Polycomb repressive complex 2 [SEP] B-AlternativeName [SEP] integrative genomics viewer"
116,189,B-AlternativeName [SEP] integrative genomics viewer,B-AlternativeName [SEP] Reproducible Epigenomic Analysis,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] integrative genomics viewer [SEP] B-AlternativeName [SEP] Reproducible Epigenomic Analysis","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] Reproducible Epigenomic Analysis [SEP] B-AlternativeName [SEP] integrative genomics viewer"
116,173,B-AlternativeName [SEP] integrative genomics viewer,B-AlternativeName [SEP] National Center for Biotechnology Information,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] integrative genomics viewer [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-AlternativeName [SEP] integrative genomics viewer"
116,155,B-AlternativeName [SEP] integrative genomics viewer,B-Application [SEP] MACS,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] integrative genomics viewer [SEP] B-Application [SEP] MACS","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] MACS [SEP] B-AlternativeName [SEP] integrative genomics viewer"
116,157,B-AlternativeName [SEP] integrative genomics viewer,B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] integrative genomics viewer [SEP] B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq [SEP] B-AlternativeName [SEP] integrative genomics viewer"
116,114,B-AlternativeName [SEP] integrative genomics viewer,B-Application [SEP] IGV,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] integrative genomics viewer [SEP] B-Application [SEP] IGV","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] IGV [SEP] B-AlternativeName [SEP] integrative genomics viewer"
116,171,B-AlternativeName [SEP] integrative genomics viewer,B-Application [SEP] NCBI,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] integrative genomics viewer [SEP] B-Application [SEP] NCBI","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] NCBI [SEP] B-AlternativeName [SEP] integrative genomics viewer"
114,179,B-Application [SEP] IGV,B-Application [SEP] PRC 2,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] IGV [SEP] B-Application [SEP] PRC 2","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] PRC 2 [SEP] B-Application [SEP] IGV"
114,187,B-Application [SEP] IGV,B-Application [SEP] REA,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] IGV [SEP] B-Application [SEP] REA","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] REA [SEP] B-Application [SEP] IGV"
114,182,B-Application [SEP] IGV,B-AlternativeName [SEP] Polycomb repressive complex 2,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] IGV [SEP] B-AlternativeName [SEP] Polycomb repressive complex 2","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] Polycomb repressive complex 2 [SEP] B-Application [SEP] IGV"
114,189,B-Application [SEP] IGV,B-AlternativeName [SEP] Reproducible Epigenomic Analysis,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] IGV [SEP] B-AlternativeName [SEP] Reproducible Epigenomic Analysis","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] Reproducible Epigenomic Analysis [SEP] B-Application [SEP] IGV"
114,173,B-Application [SEP] IGV,B-AlternativeName [SEP] National Center for Biotechnology Information,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] IGV [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] National Center for Biotechnology Information [SEP] B-Application [SEP] IGV"
114,155,B-Application [SEP] IGV,B-Application [SEP] MACS,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] IGV [SEP] B-Application [SEP] MACS","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] MACS [SEP] B-Application [SEP] IGV"
114,157,B-Application [SEP] IGV,B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] IGV [SEP] B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-AlternativeName [SEP] Model - based Analysis of ChIP - Seq [SEP] B-Application [SEP] IGV"
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171,179,B-Application [SEP] NCBI,B-Application [SEP] PRC 2,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] NCBI [SEP] B-Application [SEP] PRC 2","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] PRC 2 [SEP] B-Application [SEP] NCBI"
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171,114,B-Application [SEP] NCBI,B-Application [SEP] IGV,152,"3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : .","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] NCBI [SEP] B-Application [SEP] IGV","3 ′ RNA - seq : 3 ′ - end mRNA high - throughput sequencing ; AG : AGAMOUS ; bp : base pairs ; cDNA : complementary DNA ; ChIP : chromatin immunoprecipitation ; ChIP - seq : ChIP followed by high - throughput sequencing ; ChIP - qPCR : ChIP followed by real - time quantitative PCR ; CLF : CURLY LEAF ; DAG : days after germination ; DEG : differentially expressed genes ; FAIR : findability , accessibility , interoperability , and reusability ; FC : fold change ; FDR : false discovery rate ; GO : gene ontology ; H3K 27me 3 : histone H3 lysine 27 trimethylation ; IGV : integrative genomics viewer ; kb : kilobase pairs ; LOWESS : Locally Weighted Scatterplot Smoothing ; M : log fold - change of the normalized H3K 27me 3 read densities in leaves relative to inflorescences calculated by MAnorm ; MACS : Model - based Analysis of ChIP - Seq ; mRNA : messenger RNA ; NCBI : National Center for Biotechnology Information ; PRC 2 : Polycomb repressive complex 2 ; REA : Reproducible Epigenomic Analysis ; RNA - seq : RNA sequencing ; RT - qPCR : . [SEP] B-Application [SEP] IGV [SEP] B-Application [SEP] NCBI"
39,40,B-Application [SEP] using,B-Citation [SEP] limma [ 17,153,"The method of batch correction used for TCGA microarray data was based on median and standard deviation correction , following Hsu et al . [ 16 ] , and for TCGA RNA - seq data , a linear model using limma [ 17 ] .","The method of batch correction used for TCGA microarray data was based on median and standard deviation correction , following Hsu et al . [ 16 ] , and for TCGA RNA - seq data , a linear model using limma [ 17 ] . [SEP] B-Application [SEP] using [SEP] B-Citation [SEP] limma [ 17","The method of batch correction used for TCGA microarray data was based on median and standard deviation correction , following Hsu et al . [ 16 ] , and for TCGA RNA - seq data , a linear model using limma [ 17 ] . [SEP] B-Citation [SEP] limma [ 17 [SEP] B-Application [SEP] using"
40,39,B-Citation [SEP] limma [ 17,B-Application [SEP] using,153,"The method of batch correction used for TCGA microarray data was based on median and standard deviation correction , following Hsu et al . [ 16 ] , and for TCGA RNA - seq data , a linear model using limma [ 17 ] .","The method of batch correction used for TCGA microarray data was based on median and standard deviation correction , following Hsu et al . [ 16 ] , and for TCGA RNA - seq data , a linear model using limma [ 17 ] . [SEP] B-Citation [SEP] limma [ 17 [SEP] B-Application [SEP] using","The method of batch correction used for TCGA microarray data was based on median and standard deviation correction , following Hsu et al . [ 16 ] , and for TCGA RNA - seq data , a linear model using limma [ 17 ] . [SEP] B-Application [SEP] using [SEP] B-Citation [SEP] limma [ 17"
22,24,B-ProgrammingEnvironment [SEP] R,B-PlugIn [SEP] mclust,154,"Second , we considered a Gaussian splitting method in which the central mode is fit by a Gaussian density function using the R package mclust [ 18 ] .","Second , we considered a Gaussian splitting method in which the central mode is fit by a Gaussian density function using the R package mclust [ 18 ] . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-PlugIn [SEP] mclust","Second , we considered a Gaussian splitting method in which the central mode is fit by a Gaussian density function using the R package mclust [ 18 ] . [SEP] B-PlugIn [SEP] mclust [SEP] B-ProgrammingEnvironment [SEP] R"
22,25,B-ProgrammingEnvironment [SEP] R,B-Citation [SEP] [ 18 ],154,"Second , we considered a Gaussian splitting method in which the central mode is fit by a Gaussian density function using the R package mclust [ 18 ] .","Second , we considered a Gaussian splitting method in which the central mode is fit by a Gaussian density function using the R package mclust [ 18 ] . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Citation [SEP] [ 18 ]","Second , we considered a Gaussian splitting method in which the central mode is fit by a Gaussian density function using the R package mclust [ 18 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-ProgrammingEnvironment [SEP] R"
24,22,B-PlugIn [SEP] mclust,B-ProgrammingEnvironment [SEP] R,154,"Second , we considered a Gaussian splitting method in which the central mode is fit by a Gaussian density function using the R package mclust [ 18 ] .","Second , we considered a Gaussian splitting method in which the central mode is fit by a Gaussian density function using the R package mclust [ 18 ] . [SEP] B-PlugIn [SEP] mclust [SEP] B-ProgrammingEnvironment [SEP] R","Second , we considered a Gaussian splitting method in which the central mode is fit by a Gaussian density function using the R package mclust [ 18 ] . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-PlugIn [SEP] mclust"
24,25,B-PlugIn [SEP] mclust,B-Citation [SEP] [ 18 ],154,"Second , we considered a Gaussian splitting method in which the central mode is fit by a Gaussian density function using the R package mclust [ 18 ] .","Second , we considered a Gaussian splitting method in which the central mode is fit by a Gaussian density function using the R package mclust [ 18 ] . [SEP] B-PlugIn [SEP] mclust [SEP] B-Citation [SEP] [ 18 ]","Second , we considered a Gaussian splitting method in which the central mode is fit by a Gaussian density function using the R package mclust [ 18 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-PlugIn [SEP] mclust"
25,22,B-Citation [SEP] [ 18 ],B-ProgrammingEnvironment [SEP] R,154,"Second , we considered a Gaussian splitting method in which the central mode is fit by a Gaussian density function using the R package mclust [ 18 ] .","Second , we considered a Gaussian splitting method in which the central mode is fit by a Gaussian density function using the R package mclust [ 18 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-ProgrammingEnvironment [SEP] R","Second , we considered a Gaussian splitting method in which the central mode is fit by a Gaussian density function using the R package mclust [ 18 ] . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Citation [SEP] [ 18 ]"
25,24,B-Citation [SEP] [ 18 ],B-PlugIn [SEP] mclust,154,"Second , we considered a Gaussian splitting method in which the central mode is fit by a Gaussian density function using the R package mclust [ 18 ] .","Second , we considered a Gaussian splitting method in which the central mode is fit by a Gaussian density function using the R package mclust [ 18 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-PlugIn [SEP] mclust","Second , we considered a Gaussian splitting method in which the central mode is fit by a Gaussian density function using the R package mclust [ 18 ] . [SEP] B-PlugIn [SEP] mclust [SEP] B-Citation [SEP] [ 18 ]"
23,22,B-Citation [SEP] [ 22 ],B-Application [SEP] PantherDB,155,"Additionally , these sets of genes were also used to query several GO pathway analysis tools ( Gorilla [ 21 ] , PantherDB [ 22 ] ) .","Additionally , these sets of genes were also used to query several GO pathway analysis tools ( Gorilla [ 21 ] , PantherDB [ 22 ] ) . [SEP] B-Citation [SEP] [ 22 ] [SEP] B-Application [SEP] PantherDB","Additionally , these sets of genes were also used to query several GO pathway analysis tools ( Gorilla [ 21 ] , PantherDB [ 22 ] ) . [SEP] B-Application [SEP] PantherDB [SEP] B-Citation [SEP] [ 22 ]"
23,18,B-Citation [SEP] [ 22 ],B-Citation [SEP] [ 21 ],155,"Additionally , these sets of genes were also used to query several GO pathway analysis tools ( Gorilla [ 21 ] , PantherDB [ 22 ] ) .","Additionally , these sets of genes were also used to query several GO pathway analysis tools ( Gorilla [ 21 ] , PantherDB [ 22 ] ) . [SEP] B-Citation [SEP] [ 22 ] [SEP] B-Citation [SEP] [ 21 ]","Additionally , these sets of genes were also used to query several GO pathway analysis tools ( Gorilla [ 21 ] , PantherDB [ 22 ] ) . [SEP] B-Citation [SEP] [ 21 ] [SEP] B-Citation [SEP] [ 22 ]"
23,17,B-Citation [SEP] [ 22 ],B-Application [SEP] Gorilla,155,"Additionally , these sets of genes were also used to query several GO pathway analysis tools ( Gorilla [ 21 ] , PantherDB [ 22 ] ) .","Additionally , these sets of genes were also used to query several GO pathway analysis tools ( Gorilla [ 21 ] , PantherDB [ 22 ] ) . [SEP] B-Citation [SEP] [ 22 ] [SEP] B-Application [SEP] Gorilla","Additionally , these sets of genes were also used to query several GO pathway analysis tools ( Gorilla [ 21 ] , PantherDB [ 22 ] ) . [SEP] B-Application [SEP] Gorilla [SEP] B-Citation [SEP] [ 22 ]"
22,23,B-Application [SEP] PantherDB,B-Citation [SEP] [ 22 ],155,"Additionally , these sets of genes were also used to query several GO pathway analysis tools ( Gorilla [ 21 ] , PantherDB [ 22 ] ) .","Additionally , these sets of genes were also used to query several GO pathway analysis tools ( Gorilla [ 21 ] , PantherDB [ 22 ] ) . [SEP] B-Application [SEP] PantherDB [SEP] B-Citation [SEP] [ 22 ]","Additionally , these sets of genes were also used to query several GO pathway analysis tools ( Gorilla [ 21 ] , PantherDB [ 22 ] ) . [SEP] B-Citation [SEP] [ 22 ] [SEP] B-Application [SEP] PantherDB"
22,18,B-Application [SEP] PantherDB,B-Citation [SEP] [ 21 ],155,"Additionally , these sets of genes were also used to query several GO pathway analysis tools ( Gorilla [ 21 ] , PantherDB [ 22 ] ) .","Additionally , these sets of genes were also used to query several GO pathway analysis tools ( Gorilla [ 21 ] , PantherDB [ 22 ] ) . [SEP] B-Application [SEP] PantherDB [SEP] B-Citation [SEP] [ 21 ]","Additionally , these sets of genes were also used to query several GO pathway analysis tools ( Gorilla [ 21 ] , PantherDB [ 22 ] ) . [SEP] B-Citation [SEP] [ 21 ] [SEP] B-Application [SEP] PantherDB"
22,17,B-Application [SEP] PantherDB,B-Application [SEP] Gorilla,155,"Additionally , these sets of genes were also used to query several GO pathway analysis tools ( Gorilla [ 21 ] , PantherDB [ 22 ] ) .","Additionally , these sets of genes were also used to query several GO pathway analysis tools ( Gorilla [ 21 ] , PantherDB [ 22 ] ) . [SEP] B-Application [SEP] PantherDB [SEP] B-Application [SEP] Gorilla","Additionally , these sets of genes were also used to query several GO pathway analysis tools ( Gorilla [ 21 ] , PantherDB [ 22 ] ) . [SEP] B-Application [SEP] Gorilla [SEP] B-Application [SEP] PantherDB"
18,23,B-Citation [SEP] [ 21 ],B-Citation [SEP] [ 22 ],155,"Additionally , these sets of genes were also used to query several GO pathway analysis tools ( Gorilla [ 21 ] , PantherDB [ 22 ] ) .","Additionally , these sets of genes were also used to query several GO pathway analysis tools ( Gorilla [ 21 ] , PantherDB [ 22 ] ) . [SEP] B-Citation [SEP] [ 21 ] [SEP] B-Citation [SEP] [ 22 ]","Additionally , these sets of genes were also used to query several GO pathway analysis tools ( Gorilla [ 21 ] , PantherDB [ 22 ] ) . [SEP] B-Citation [SEP] [ 22 ] [SEP] B-Citation [SEP] [ 21 ]"
18,22,B-Citation [SEP] [ 21 ],B-Application [SEP] PantherDB,155,"Additionally , these sets of genes were also used to query several GO pathway analysis tools ( Gorilla [ 21 ] , PantherDB [ 22 ] ) .","Additionally , these sets of genes were also used to query several GO pathway analysis tools ( Gorilla [ 21 ] , PantherDB [ 22 ] ) . [SEP] B-Citation [SEP] [ 21 ] [SEP] B-Application [SEP] PantherDB","Additionally , these sets of genes were also used to query several GO pathway analysis tools ( Gorilla [ 21 ] , PantherDB [ 22 ] ) . [SEP] B-Application [SEP] PantherDB [SEP] B-Citation [SEP] [ 21 ]"
18,17,B-Citation [SEP] [ 21 ],B-Application [SEP] Gorilla,155,"Additionally , these sets of genes were also used to query several GO pathway analysis tools ( Gorilla [ 21 ] , PantherDB [ 22 ] ) .","Additionally , these sets of genes were also used to query several GO pathway analysis tools ( Gorilla [ 21 ] , PantherDB [ 22 ] ) . [SEP] B-Citation [SEP] [ 21 ] [SEP] B-Application [SEP] Gorilla","Additionally , these sets of genes were also used to query several GO pathway analysis tools ( Gorilla [ 21 ] , PantherDB [ 22 ] ) . [SEP] B-Application [SEP] Gorilla [SEP] B-Citation [SEP] [ 21 ]"
17,23,B-Application [SEP] Gorilla,B-Citation [SEP] [ 22 ],155,"Additionally , these sets of genes were also used to query several GO pathway analysis tools ( Gorilla [ 21 ] , PantherDB [ 22 ] ) .","Additionally , these sets of genes were also used to query several GO pathway analysis tools ( Gorilla [ 21 ] , PantherDB [ 22 ] ) . [SEP] B-Application [SEP] Gorilla [SEP] B-Citation [SEP] [ 22 ]","Additionally , these sets of genes were also used to query several GO pathway analysis tools ( Gorilla [ 21 ] , PantherDB [ 22 ] ) . [SEP] B-Citation [SEP] [ 22 ] [SEP] B-Application [SEP] Gorilla"
17,22,B-Application [SEP] Gorilla,B-Application [SEP] PantherDB,155,"Additionally , these sets of genes were also used to query several GO pathway analysis tools ( Gorilla [ 21 ] , PantherDB [ 22 ] ) .","Additionally , these sets of genes were also used to query several GO pathway analysis tools ( Gorilla [ 21 ] , PantherDB [ 22 ] ) . [SEP] B-Application [SEP] Gorilla [SEP] B-Application [SEP] PantherDB","Additionally , these sets of genes were also used to query several GO pathway analysis tools ( Gorilla [ 21 ] , PantherDB [ 22 ] ) . [SEP] B-Application [SEP] PantherDB [SEP] B-Application [SEP] Gorilla"
17,18,B-Application [SEP] Gorilla,B-Citation [SEP] [ 21 ],155,"Additionally , these sets of genes were also used to query several GO pathway analysis tools ( Gorilla [ 21 ] , PantherDB [ 22 ] ) .","Additionally , these sets of genes were also used to query several GO pathway analysis tools ( Gorilla [ 21 ] , PantherDB [ 22 ] ) . [SEP] B-Application [SEP] Gorilla [SEP] B-Citation [SEP] [ 21 ]","Additionally , these sets of genes were also used to query several GO pathway analysis tools ( Gorilla [ 21 ] , PantherDB [ 22 ] ) . [SEP] B-Citation [SEP] [ 21 ] [SEP] B-Application [SEP] Gorilla"
0,2,B-ProgrammingEnvironment [SEP] R,B-Version [SEP] 3 . 2 . 3,156,R version 3 . 2 . 3 was used for all analysis .,R version 3 . 2 . 3 was used for all analysis . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Version [SEP] 3 . 2 . 3,R version 3 . 2 . 3 was used for all analysis . [SEP] B-Version [SEP] 3 . 2 . 3 [SEP] B-ProgrammingEnvironment [SEP] R
2,0,B-Version [SEP] 3 . 2 . 3,B-ProgrammingEnvironment [SEP] R,156,R version 3 . 2 . 3 was used for all analysis .,R version 3 . 2 . 3 was used for all analysis . [SEP] B-Version [SEP] 3 . 2 . 3 [SEP] B-ProgrammingEnvironment [SEP] R,R version 3 . 2 . 3 was used for all analysis . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Version [SEP] 3 . 2 . 3
47,48,B-Application [SEP] RSEM,B-Citation [SEP] [ 33 ],157,"All five datasets contain samples from primary solid tumour and recurrent solid tumour collected at UNC using Illumina HiSeq 2000 RNA Sequencing Version 2 Analysis , were log 2 - transformed and reported as fragments per kilobase of transcript per million ( FPKM ) mapped reads via RSEM [ 33 ] .","All five datasets contain samples from primary solid tumour and recurrent solid tumour collected at UNC using Illumina HiSeq 2000 RNA Sequencing Version 2 Analysis , were log 2 - transformed and reported as fragments per kilobase of transcript per million ( FPKM ) mapped reads via RSEM [ 33 ] . [SEP] B-Application [SEP] RSEM [SEP] B-Citation [SEP] [ 33 ]","All five datasets contain samples from primary solid tumour and recurrent solid tumour collected at UNC using Illumina HiSeq 2000 RNA Sequencing Version 2 Analysis , were log 2 - transformed and reported as fragments per kilobase of transcript per million ( FPKM ) mapped reads via RSEM [ 33 ] . [SEP] B-Citation [SEP] [ 33 ] [SEP] B-Application [SEP] RSEM"
48,47,B-Citation [SEP] [ 33 ],B-Application [SEP] RSEM,157,"All five datasets contain samples from primary solid tumour and recurrent solid tumour collected at UNC using Illumina HiSeq 2000 RNA Sequencing Version 2 Analysis , were log 2 - transformed and reported as fragments per kilobase of transcript per million ( FPKM ) mapped reads via RSEM [ 33 ] .","All five datasets contain samples from primary solid tumour and recurrent solid tumour collected at UNC using Illumina HiSeq 2000 RNA Sequencing Version 2 Analysis , were log 2 - transformed and reported as fragments per kilobase of transcript per million ( FPKM ) mapped reads via RSEM [ 33 ] . [SEP] B-Citation [SEP] [ 33 ] [SEP] B-Application [SEP] RSEM","All five datasets contain samples from primary solid tumour and recurrent solid tumour collected at UNC using Illumina HiSeq 2000 RNA Sequencing Version 2 Analysis , were log 2 - transformed and reported as fragments per kilobase of transcript per million ( FPKM ) mapped reads via RSEM [ 33 ] . [SEP] B-Application [SEP] RSEM [SEP] B-Citation [SEP] [ 33 ]"
12,14,B-Application [SEP] GEM mapper,B-Version [SEP] 1 . 349,158,"These data were collected using an Illumina HiSeq 2000 , processed with GEM mapper 1 . 349 , and log 2 - transformed .","These data were collected using an Illumina HiSeq 2000 , processed with GEM mapper 1 . 349 , and log 2 - transformed . [SEP] B-Application [SEP] GEM mapper [SEP] B-Version [SEP] 1 . 349","These data were collected using an Illumina HiSeq 2000 , processed with GEM mapper 1 . 349 , and log 2 - transformed . [SEP] B-Version [SEP] 1 . 349 [SEP] B-Application [SEP] GEM mapper"
14,12,B-Version [SEP] 1 . 349,B-Application [SEP] GEM mapper,158,"These data were collected using an Illumina HiSeq 2000 , processed with GEM mapper 1 . 349 , and log 2 - transformed .","These data were collected using an Illumina HiSeq 2000 , processed with GEM mapper 1 . 349 , and log 2 - transformed . [SEP] B-Version [SEP] 1 . 349 [SEP] B-Application [SEP] GEM mapper","These data were collected using an Illumina HiSeq 2000 , processed with GEM mapper 1 . 349 , and log 2 - transformed . [SEP] B-Application [SEP] GEM mapper [SEP] B-Version [SEP] 1 . 349"
19,12,B-ProgrammingEnvironment [SEP] R,B-Version [SEP] 2 . 10 . 0,159,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) .,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Version [SEP] 2 . 10 . 0,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) . [SEP] B-Version [SEP] 2 . 10 . 0 [SEP] B-ProgrammingEnvironment [SEP] R
19,22,B-ProgrammingEnvironment [SEP] R,B-Version [SEP] 3 . 1 . 0,159,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) .,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Version [SEP] 3 . 1 . 0,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) . [SEP] B-Version [SEP] 3 . 1 . 0 [SEP] B-ProgrammingEnvironment [SEP] R
19,6,B-ProgrammingEnvironment [SEP] R,B-PlugIn [SEP] methylumi,159,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) .,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-PlugIn [SEP] methylumi,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) . [SEP] B-PlugIn [SEP] methylumi [SEP] B-ProgrammingEnvironment [SEP] R
12,19,B-Version [SEP] 2 . 10 . 0,B-ProgrammingEnvironment [SEP] R,159,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) .,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) . [SEP] B-Version [SEP] 2 . 10 . 0 [SEP] B-ProgrammingEnvironment [SEP] R,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Version [SEP] 2 . 10 . 0
12,22,B-Version [SEP] 2 . 10 . 0,B-Version [SEP] 3 . 1 . 0,159,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) .,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) . [SEP] B-Version [SEP] 2 . 10 . 0 [SEP] B-Version [SEP] 3 . 1 . 0,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) . [SEP] B-Version [SEP] 3 . 1 . 0 [SEP] B-Version [SEP] 2 . 10 . 0
12,6,B-Version [SEP] 2 . 10 . 0,B-PlugIn [SEP] methylumi,159,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) .,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) . [SEP] B-Version [SEP] 2 . 10 . 0 [SEP] B-PlugIn [SEP] methylumi,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) . [SEP] B-PlugIn [SEP] methylumi [SEP] B-Version [SEP] 2 . 10 . 0
12,7,B-Version [SEP] 2 . 10 . 0,B-ProgrammingEnvironment [SEP] R,159,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) .,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) . [SEP] B-Version [SEP] 2 . 10 . 0 [SEP] B-ProgrammingEnvironment [SEP] R,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Version [SEP] 2 . 10 . 0
22,19,B-Version [SEP] 3 . 1 . 0,B-ProgrammingEnvironment [SEP] R,159,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) .,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) . [SEP] B-Version [SEP] 3 . 1 . 0 [SEP] B-ProgrammingEnvironment [SEP] R,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Version [SEP] 3 . 1 . 0
22,12,B-Version [SEP] 3 . 1 . 0,B-Version [SEP] 2 . 10 . 0,159,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) .,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) . [SEP] B-Version [SEP] 3 . 1 . 0 [SEP] B-Version [SEP] 2 . 10 . 0,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) . [SEP] B-Version [SEP] 2 . 10 . 0 [SEP] B-Version [SEP] 3 . 1 . 0
22,6,B-Version [SEP] 3 . 1 . 0,B-PlugIn [SEP] methylumi,159,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) .,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) . [SEP] B-Version [SEP] 3 . 1 . 0 [SEP] B-PlugIn [SEP] methylumi,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) . [SEP] B-PlugIn [SEP] methylumi [SEP] B-Version [SEP] 3 . 1 . 0
22,7,B-Version [SEP] 3 . 1 . 0,B-ProgrammingEnvironment [SEP] R,159,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) .,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) . [SEP] B-Version [SEP] 3 . 1 . 0 [SEP] B-ProgrammingEnvironment [SEP] R,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Version [SEP] 3 . 1 . 0
6,19,B-PlugIn [SEP] methylumi,B-ProgrammingEnvironment [SEP] R,159,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) .,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) . [SEP] B-PlugIn [SEP] methylumi [SEP] B-ProgrammingEnvironment [SEP] R,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-PlugIn [SEP] methylumi
6,12,B-PlugIn [SEP] methylumi,B-Version [SEP] 2 . 10 . 0,159,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) .,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) . [SEP] B-PlugIn [SEP] methylumi [SEP] B-Version [SEP] 2 . 10 . 0,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) . [SEP] B-Version [SEP] 2 . 10 . 0 [SEP] B-PlugIn [SEP] methylumi
6,22,B-PlugIn [SEP] methylumi,B-Version [SEP] 3 . 1 . 0,159,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) .,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) . [SEP] B-PlugIn [SEP] methylumi [SEP] B-Version [SEP] 3 . 1 . 0,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) . [SEP] B-Version [SEP] 3 . 1 . 0 [SEP] B-PlugIn [SEP] methylumi
6,7,B-PlugIn [SEP] methylumi,B-ProgrammingEnvironment [SEP] R,159,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) .,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) . [SEP] B-PlugIn [SEP] methylumi [SEP] B-ProgrammingEnvironment [SEP] R,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-PlugIn [SEP] methylumi
7,12,B-ProgrammingEnvironment [SEP] R,B-Version [SEP] 2 . 10 . 0,159,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) .,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Version [SEP] 2 . 10 . 0,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) . [SEP] B-Version [SEP] 2 . 10 . 0 [SEP] B-ProgrammingEnvironment [SEP] R
7,22,B-ProgrammingEnvironment [SEP] R,B-Version [SEP] 3 . 1 . 0,159,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) .,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Version [SEP] 3 . 1 . 0,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) . [SEP] B-Version [SEP] 3 . 1 . 0 [SEP] B-ProgrammingEnvironment [SEP] R
7,6,B-ProgrammingEnvironment [SEP] R,B-PlugIn [SEP] methylumi,159,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) .,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-PlugIn [SEP] methylumi,Summary intensities were extracted by the methylumi R package ( v . 2 . 10 . 0 run in R v . 3 . 1 . 0 ) . [SEP] B-PlugIn [SEP] methylumi [SEP] B-ProgrammingEnvironment [SEP] R
9,11,B-ProgrammingEnvironment [SEP] R,B-PlugIn [SEP] Bioconductor,160,A variable standard deviation Gaussian mixture model from the R / Bioconductor package mclust ( version 5 . 0 . 2 run on R version 3 . 1 . 2 ) was used to cluster genes by skew difference .,A variable standard deviation Gaussian mixture model from the R / Bioconductor package mclust ( version 5 . 0 . 2 run on R version 3 . 1 . 2 ) was used to cluster genes by skew difference . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-PlugIn [SEP] Bioconductor,A variable standard deviation Gaussian mixture model from the R / Bioconductor package mclust ( version 5 . 0 . 2 run on R version 3 . 1 . 2 ) was used to cluster genes by skew difference . [SEP] B-PlugIn [SEP] Bioconductor [SEP] B-ProgrammingEnvironment [SEP] R
9,13,B-ProgrammingEnvironment [SEP] R,B-PlugIn [SEP] mclust,160,A variable standard deviation Gaussian mixture model from the R / Bioconductor package mclust ( version 5 . 0 . 2 run on R version 3 . 1 . 2 ) was used to cluster genes by skew difference .,A variable standard deviation Gaussian mixture model from the R / Bioconductor package mclust ( version 5 . 0 . 2 run on R version 3 . 1 . 2 ) was used to cluster genes by skew difference . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-PlugIn [SEP] mclust,A variable standard deviation Gaussian mixture model from the R / Bioconductor package mclust ( version 5 . 0 . 2 run on R version 3 . 1 . 2 ) was used to cluster genes by skew difference . [SEP] B-PlugIn [SEP] mclust [SEP] B-ProgrammingEnvironment [SEP] R
9,16,B-ProgrammingEnvironment [SEP] R,B-Version [SEP] 5 . 0 . 2,160,A variable standard deviation Gaussian mixture model from the R / Bioconductor package mclust ( version 5 . 0 . 2 run on R version 3 . 1 . 2 ) was used to cluster genes by skew difference .,A variable standard deviation Gaussian mixture model from the R / Bioconductor package mclust ( version 5 . 0 . 2 run on R version 3 . 1 . 2 ) was used to cluster genes by skew difference . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Version [SEP] 5 . 0 . 2,A variable standard deviation Gaussian mixture model from the R / Bioconductor package mclust ( version 5 . 0 . 2 run on R version 3 . 1 . 2 ) was used to cluster genes by skew difference . [SEP] B-Version [SEP] 5 . 0 . 2 [SEP] B-ProgrammingEnvironment [SEP] R
9,25,B-ProgrammingEnvironment [SEP] R,B-Version [SEP] 3 . 1 . 2,160,A variable standard deviation Gaussian mixture model from the R / Bioconductor package mclust ( version 5 . 0 . 2 run on R version 3 . 1 . 2 ) was used to cluster genes by skew difference .,A variable standard deviation Gaussian mixture model from the R / Bioconductor package mclust ( version 5 . 0 . 2 run on R version 3 . 1 . 2 ) was used to cluster genes by skew difference . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Version [SEP] 3 . 1 . 2,A variable standard deviation Gaussian mixture model from the R / Bioconductor package mclust ( version 5 . 0 . 2 run on R version 3 . 1 . 2 ) was used to cluster genes by skew difference . [SEP] B-Version [SEP] 3 . 1 . 2 [SEP] B-ProgrammingEnvironment [SEP] R
11,9,B-PlugIn [SEP] Bioconductor,B-ProgrammingEnvironment [SEP] R,160,A variable standard deviation Gaussian mixture model from the R / Bioconductor package mclust ( version 5 . 0 . 2 run on R version 3 . 1 . 2 ) was used to cluster genes by skew difference .,A variable standard deviation Gaussian mixture model from the R / Bioconductor package mclust ( version 5 . 0 . 2 run on R version 3 . 1 . 2 ) was used to cluster genes by skew difference . [SEP] B-PlugIn [SEP] Bioconductor [SEP] B-ProgrammingEnvironment [SEP] R,A variable standard deviation Gaussian mixture model from the R / Bioconductor package mclust ( version 5 . 0 . 2 run on R version 3 . 1 . 2 ) was used to cluster genes by skew difference . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-PlugIn [SEP] Bioconductor
11,13,B-PlugIn [SEP] Bioconductor,B-PlugIn [SEP] mclust,160,A variable standard deviation Gaussian mixture model from the R / Bioconductor package mclust ( version 5 . 0 . 2 run on R version 3 . 1 . 2 ) was used to cluster genes by skew difference .,A variable standard deviation Gaussian mixture model from the R / Bioconductor package mclust ( version 5 . 0 . 2 run on R version 3 . 1 . 2 ) was used to cluster genes by skew difference . [SEP] B-PlugIn [SEP] Bioconductor [SEP] B-PlugIn [SEP] mclust,A variable standard deviation Gaussian mixture model from the R / Bioconductor package mclust ( version 5 . 0 . 2 run on R version 3 . 1 . 2 ) was used to cluster genes by skew difference . [SEP] B-PlugIn [SEP] mclust [SEP] B-PlugIn [SEP] Bioconductor
11,16,B-PlugIn [SEP] Bioconductor,B-Version [SEP] 5 . 0 . 2,160,A variable standard deviation Gaussian mixture model from the R / Bioconductor package mclust ( version 5 . 0 . 2 run on R version 3 . 1 . 2 ) was used to cluster genes by skew difference .,A variable standard deviation Gaussian mixture model from the R / Bioconductor package mclust ( version 5 . 0 . 2 run on R version 3 . 1 . 2 ) was used to cluster genes by skew difference . [SEP] B-PlugIn [SEP] Bioconductor [SEP] B-Version [SEP] 5 . 0 . 2,A variable standard deviation Gaussian mixture model from the R / Bioconductor package mclust ( version 5 . 0 . 2 run on R version 3 . 1 . 2 ) was used to cluster genes by skew difference . [SEP] B-Version [SEP] 5 . 0 . 2 [SEP] B-PlugIn [SEP] Bioconductor
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51,26,B-Citation [SEP] [ 37 ],B-Citation [SEP] [ 36 ],161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Citation [SEP] [ 37 ] [SEP] B-Citation [SEP] [ 36 ]","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-Citation [SEP] [ 37 ]"
45,51,B-Version [SEP] 3 . 1 . 2,B-Citation [SEP] [ 37 ],161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 3 . 1 . 2 [SEP] B-Citation [SEP] [ 37 ]","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Citation [SEP] [ 37 ] [SEP] B-Version [SEP] 3 . 1 . 2"
45,43,B-Version [SEP] 3 . 1 . 2,B-ProgrammingEnvironment [SEP] R,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 3 . 1 . 2 [SEP] B-ProgrammingEnvironment [SEP] R","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Version [SEP] 3 . 1 . 2"
45,38,B-Version [SEP] 3 . 1 . 2,B-Version [SEP] 2 . 1,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 3 . 1 . 2 [SEP] B-Version [SEP] 2 . 1","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 2 . 1 [SEP] B-Version [SEP] 3 . 1 . 2"
45,33,B-Version [SEP] 3 . 1 . 2,B-PlugIn [SEP] KEGG . db,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 3 . 1 . 2 [SEP] B-PlugIn [SEP] KEGG . db","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] KEGG . db [SEP] B-Version [SEP] 3 . 1 . 2"
45,31,B-Version [SEP] 3 . 1 . 2,B-PlugIn [SEP] Bioconductor,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 3 . 1 . 2 [SEP] B-PlugIn [SEP] Bioconductor","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] Bioconductor [SEP] B-Version [SEP] 3 . 1 . 2"
45,18,B-Version [SEP] 3 . 1 . 2,B-ProgrammingEnvironment [SEP] R,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 3 . 1 . 2 [SEP] B-ProgrammingEnvironment [SEP] R","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Version [SEP] 3 . 1 . 2"
45,10,B-Version [SEP] 3 . 1 . 2,B-Version [SEP] 1 . 7 . 4,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 3 . 1 . 2 [SEP] B-Version [SEP] 1 . 7 . 4","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 1 . 7 . 4 [SEP] B-Version [SEP] 3 . 1 . 2"
45,7,B-Version [SEP] 3 . 1 . 2,B-PlugIn [SEP] GOstats,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 3 . 1 . 2 [SEP] B-PlugIn [SEP] GOstats","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] GOstats [SEP] B-Version [SEP] 3 . 1 . 2"
45,5,B-Version [SEP] 3 . 1 . 2,B-PlugIn [SEP] Bioconductor,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 3 . 1 . 2 [SEP] B-PlugIn [SEP] Bioconductor","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] Bioconductor [SEP] B-Version [SEP] 3 . 1 . 2"
45,26,B-Version [SEP] 3 . 1 . 2,B-Citation [SEP] [ 36 ],161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 3 . 1 . 2 [SEP] B-Citation [SEP] [ 36 ]","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-Version [SEP] 3 . 1 . 2"
43,51,B-ProgrammingEnvironment [SEP] R,B-Citation [SEP] [ 37 ],161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Citation [SEP] [ 37 ]","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Citation [SEP] [ 37 ] [SEP] B-ProgrammingEnvironment [SEP] R"
43,45,B-ProgrammingEnvironment [SEP] R,B-Version [SEP] 3 . 1 . 2,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Version [SEP] 3 . 1 . 2","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 3 . 1 . 2 [SEP] B-ProgrammingEnvironment [SEP] R"
43,38,B-ProgrammingEnvironment [SEP] R,B-Version [SEP] 2 . 1,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Version [SEP] 2 . 1","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 2 . 1 [SEP] B-ProgrammingEnvironment [SEP] R"
43,33,B-ProgrammingEnvironment [SEP] R,B-PlugIn [SEP] KEGG . db,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-PlugIn [SEP] KEGG . db","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] KEGG . db [SEP] B-ProgrammingEnvironment [SEP] R"
43,31,B-ProgrammingEnvironment [SEP] R,B-PlugIn [SEP] Bioconductor,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-PlugIn [SEP] Bioconductor","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] Bioconductor [SEP] B-ProgrammingEnvironment [SEP] R"
43,20,B-ProgrammingEnvironment [SEP] R,B-Version [SEP] 3 . 1 . 2,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Version [SEP] 3 . 1 . 2","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 3 . 1 . 2 [SEP] B-ProgrammingEnvironment [SEP] R"
43,10,B-ProgrammingEnvironment [SEP] R,B-Version [SEP] 1 . 7 . 4,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Version [SEP] 1 . 7 . 4","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 1 . 7 . 4 [SEP] B-ProgrammingEnvironment [SEP] R"
43,7,B-ProgrammingEnvironment [SEP] R,B-PlugIn [SEP] GOstats,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-PlugIn [SEP] GOstats","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] GOstats [SEP] B-ProgrammingEnvironment [SEP] R"
43,5,B-ProgrammingEnvironment [SEP] R,B-PlugIn [SEP] Bioconductor,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-PlugIn [SEP] Bioconductor","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] Bioconductor [SEP] B-ProgrammingEnvironment [SEP] R"
43,26,B-ProgrammingEnvironment [SEP] R,B-Citation [SEP] [ 36 ],161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Citation [SEP] [ 36 ]","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-ProgrammingEnvironment [SEP] R"
38,51,B-Version [SEP] 2 . 1,B-Citation [SEP] [ 37 ],161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 2 . 1 [SEP] B-Citation [SEP] [ 37 ]","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Citation [SEP] [ 37 ] [SEP] B-Version [SEP] 2 . 1"
38,45,B-Version [SEP] 2 . 1,B-Version [SEP] 3 . 1 . 2,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 2 . 1 [SEP] B-Version [SEP] 3 . 1 . 2","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 3 . 1 . 2 [SEP] B-Version [SEP] 2 . 1"
38,43,B-Version [SEP] 2 . 1,B-ProgrammingEnvironment [SEP] R,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 2 . 1 [SEP] B-ProgrammingEnvironment [SEP] R","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Version [SEP] 2 . 1"
38,33,B-Version [SEP] 2 . 1,B-PlugIn [SEP] KEGG . db,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 2 . 1 [SEP] B-PlugIn [SEP] KEGG . db","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] KEGG . db [SEP] B-Version [SEP] 2 . 1"
38,31,B-Version [SEP] 2 . 1,B-PlugIn [SEP] Bioconductor,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 2 . 1 [SEP] B-PlugIn [SEP] Bioconductor","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] Bioconductor [SEP] B-Version [SEP] 2 . 1"
38,20,B-Version [SEP] 2 . 1,B-Version [SEP] 3 . 1 . 2,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 2 . 1 [SEP] B-Version [SEP] 3 . 1 . 2","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 3 . 1 . 2 [SEP] B-Version [SEP] 2 . 1"
38,18,B-Version [SEP] 2 . 1,B-ProgrammingEnvironment [SEP] R,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 2 . 1 [SEP] B-ProgrammingEnvironment [SEP] R","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Version [SEP] 2 . 1"
38,10,B-Version [SEP] 2 . 1,B-Version [SEP] 1 . 7 . 4,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 2 . 1 [SEP] B-Version [SEP] 1 . 7 . 4","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 1 . 7 . 4 [SEP] B-Version [SEP] 2 . 1"
38,7,B-Version [SEP] 2 . 1,B-PlugIn [SEP] GOstats,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 2 . 1 [SEP] B-PlugIn [SEP] GOstats","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] GOstats [SEP] B-Version [SEP] 2 . 1"
38,5,B-Version [SEP] 2 . 1,B-PlugIn [SEP] Bioconductor,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 2 . 1 [SEP] B-PlugIn [SEP] Bioconductor","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] Bioconductor [SEP] B-Version [SEP] 2 . 1"
38,26,B-Version [SEP] 2 . 1,B-Citation [SEP] [ 36 ],161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 2 . 1 [SEP] B-Citation [SEP] [ 36 ]","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-Version [SEP] 2 . 1"
33,51,B-PlugIn [SEP] KEGG . db,B-Citation [SEP] [ 37 ],161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] KEGG . db [SEP] B-Citation [SEP] [ 37 ]","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Citation [SEP] [ 37 ] [SEP] B-PlugIn [SEP] KEGG . db"
33,45,B-PlugIn [SEP] KEGG . db,B-Version [SEP] 3 . 1 . 2,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] KEGG . db [SEP] B-Version [SEP] 3 . 1 . 2","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 3 . 1 . 2 [SEP] B-PlugIn [SEP] KEGG . db"
33,43,B-PlugIn [SEP] KEGG . db,B-ProgrammingEnvironment [SEP] R,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] KEGG . db [SEP] B-ProgrammingEnvironment [SEP] R","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-PlugIn [SEP] KEGG . db"
33,38,B-PlugIn [SEP] KEGG . db,B-Version [SEP] 2 . 1,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] KEGG . db [SEP] B-Version [SEP] 2 . 1","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 2 . 1 [SEP] B-PlugIn [SEP] KEGG . db"
33,31,B-PlugIn [SEP] KEGG . db,B-PlugIn [SEP] Bioconductor,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] KEGG . db [SEP] B-PlugIn [SEP] Bioconductor","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] Bioconductor [SEP] B-PlugIn [SEP] KEGG . db"
33,20,B-PlugIn [SEP] KEGG . db,B-Version [SEP] 3 . 1 . 2,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] KEGG . db [SEP] B-Version [SEP] 3 . 1 . 2","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 3 . 1 . 2 [SEP] B-PlugIn [SEP] KEGG . db"
33,18,B-PlugIn [SEP] KEGG . db,B-ProgrammingEnvironment [SEP] R,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] KEGG . db [SEP] B-ProgrammingEnvironment [SEP] R","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-PlugIn [SEP] KEGG . db"
33,10,B-PlugIn [SEP] KEGG . db,B-Version [SEP] 1 . 7 . 4,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] KEGG . db [SEP] B-Version [SEP] 1 . 7 . 4","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 1 . 7 . 4 [SEP] B-PlugIn [SEP] KEGG . db"
33,7,B-PlugIn [SEP] KEGG . db,B-PlugIn [SEP] GOstats,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] KEGG . db [SEP] B-PlugIn [SEP] GOstats","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] GOstats [SEP] B-PlugIn [SEP] KEGG . db"
33,5,B-PlugIn [SEP] KEGG . db,B-PlugIn [SEP] Bioconductor,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] KEGG . db [SEP] B-PlugIn [SEP] Bioconductor","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] Bioconductor [SEP] B-PlugIn [SEP] KEGG . db"
33,26,B-PlugIn [SEP] KEGG . db,B-Citation [SEP] [ 36 ],161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] KEGG . db [SEP] B-Citation [SEP] [ 36 ]","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-PlugIn [SEP] KEGG . db"
31,51,B-PlugIn [SEP] Bioconductor,B-Citation [SEP] [ 37 ],161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] Bioconductor [SEP] B-Citation [SEP] [ 37 ]","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Citation [SEP] [ 37 ] [SEP] B-PlugIn [SEP] Bioconductor"
31,45,B-PlugIn [SEP] Bioconductor,B-Version [SEP] 3 . 1 . 2,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] Bioconductor [SEP] B-Version [SEP] 3 . 1 . 2","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 3 . 1 . 2 [SEP] B-PlugIn [SEP] Bioconductor"
31,43,B-PlugIn [SEP] Bioconductor,B-ProgrammingEnvironment [SEP] R,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] Bioconductor [SEP] B-ProgrammingEnvironment [SEP] R","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-PlugIn [SEP] Bioconductor"
31,38,B-PlugIn [SEP] Bioconductor,B-Version [SEP] 2 . 1,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] Bioconductor [SEP] B-Version [SEP] 2 . 1","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 2 . 1 [SEP] B-PlugIn [SEP] Bioconductor"
31,33,B-PlugIn [SEP] Bioconductor,B-PlugIn [SEP] KEGG . db,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] Bioconductor [SEP] B-PlugIn [SEP] KEGG . db","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] KEGG . db [SEP] B-PlugIn [SEP] Bioconductor"
31,20,B-PlugIn [SEP] Bioconductor,B-Version [SEP] 3 . 1 . 2,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] Bioconductor [SEP] B-Version [SEP] 3 . 1 . 2","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 3 . 1 . 2 [SEP] B-PlugIn [SEP] Bioconductor"
31,18,B-PlugIn [SEP] Bioconductor,B-ProgrammingEnvironment [SEP] R,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] Bioconductor [SEP] B-ProgrammingEnvironment [SEP] R","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-PlugIn [SEP] Bioconductor"
31,10,B-PlugIn [SEP] Bioconductor,B-Version [SEP] 1 . 7 . 4,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] Bioconductor [SEP] B-Version [SEP] 1 . 7 . 4","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 1 . 7 . 4 [SEP] B-PlugIn [SEP] Bioconductor"
31,7,B-PlugIn [SEP] Bioconductor,B-PlugIn [SEP] GOstats,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] Bioconductor [SEP] B-PlugIn [SEP] GOstats","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] GOstats [SEP] B-PlugIn [SEP] Bioconductor"
31,26,B-PlugIn [SEP] Bioconductor,B-Citation [SEP] [ 36 ],161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] Bioconductor [SEP] B-Citation [SEP] [ 36 ]","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-PlugIn [SEP] Bioconductor"
20,51,B-Version [SEP] 3 . 1 . 2,B-Citation [SEP] [ 37 ],161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 3 . 1 . 2 [SEP] B-Citation [SEP] [ 37 ]","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Citation [SEP] [ 37 ] [SEP] B-Version [SEP] 3 . 1 . 2"
20,43,B-Version [SEP] 3 . 1 . 2,B-ProgrammingEnvironment [SEP] R,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 3 . 1 . 2 [SEP] B-ProgrammingEnvironment [SEP] R","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Version [SEP] 3 . 1 . 2"
20,38,B-Version [SEP] 3 . 1 . 2,B-Version [SEP] 2 . 1,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 3 . 1 . 2 [SEP] B-Version [SEP] 2 . 1","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 2 . 1 [SEP] B-Version [SEP] 3 . 1 . 2"
20,33,B-Version [SEP] 3 . 1 . 2,B-PlugIn [SEP] KEGG . db,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 3 . 1 . 2 [SEP] B-PlugIn [SEP] KEGG . db","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] KEGG . db [SEP] B-Version [SEP] 3 . 1 . 2"
20,31,B-Version [SEP] 3 . 1 . 2,B-PlugIn [SEP] Bioconductor,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 3 . 1 . 2 [SEP] B-PlugIn [SEP] Bioconductor","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] Bioconductor [SEP] B-Version [SEP] 3 . 1 . 2"
20,18,B-Version [SEP] 3 . 1 . 2,B-ProgrammingEnvironment [SEP] R,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 3 . 1 . 2 [SEP] B-ProgrammingEnvironment [SEP] R","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Version [SEP] 3 . 1 . 2"
20,10,B-Version [SEP] 3 . 1 . 2,B-Version [SEP] 1 . 7 . 4,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 3 . 1 . 2 [SEP] B-Version [SEP] 1 . 7 . 4","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 1 . 7 . 4 [SEP] B-Version [SEP] 3 . 1 . 2"
20,7,B-Version [SEP] 3 . 1 . 2,B-PlugIn [SEP] GOstats,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 3 . 1 . 2 [SEP] B-PlugIn [SEP] GOstats","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] GOstats [SEP] B-Version [SEP] 3 . 1 . 2"
20,5,B-Version [SEP] 3 . 1 . 2,B-PlugIn [SEP] Bioconductor,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 3 . 1 . 2 [SEP] B-PlugIn [SEP] Bioconductor","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] Bioconductor [SEP] B-Version [SEP] 3 . 1 . 2"
20,26,B-Version [SEP] 3 . 1 . 2,B-Citation [SEP] [ 36 ],161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 3 . 1 . 2 [SEP] B-Citation [SEP] [ 36 ]","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-Version [SEP] 3 . 1 . 2"
18,51,B-ProgrammingEnvironment [SEP] R,B-Citation [SEP] [ 37 ],161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Citation [SEP] [ 37 ]","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Citation [SEP] [ 37 ] [SEP] B-ProgrammingEnvironment [SEP] R"
18,45,B-ProgrammingEnvironment [SEP] R,B-Version [SEP] 3 . 1 . 2,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Version [SEP] 3 . 1 . 2","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 3 . 1 . 2 [SEP] B-ProgrammingEnvironment [SEP] R"
18,38,B-ProgrammingEnvironment [SEP] R,B-Version [SEP] 2 . 1,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Version [SEP] 2 . 1","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 2 . 1 [SEP] B-ProgrammingEnvironment [SEP] R"
18,33,B-ProgrammingEnvironment [SEP] R,B-PlugIn [SEP] KEGG . db,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-PlugIn [SEP] KEGG . db","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] KEGG . db [SEP] B-ProgrammingEnvironment [SEP] R"
18,31,B-ProgrammingEnvironment [SEP] R,B-PlugIn [SEP] Bioconductor,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-PlugIn [SEP] Bioconductor","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] Bioconductor [SEP] B-ProgrammingEnvironment [SEP] R"
18,20,B-ProgrammingEnvironment [SEP] R,B-Version [SEP] 3 . 1 . 2,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Version [SEP] 3 . 1 . 2","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 3 . 1 . 2 [SEP] B-ProgrammingEnvironment [SEP] R"
18,10,B-ProgrammingEnvironment [SEP] R,B-Version [SEP] 1 . 7 . 4,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Version [SEP] 1 . 7 . 4","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 1 . 7 . 4 [SEP] B-ProgrammingEnvironment [SEP] R"
18,7,B-ProgrammingEnvironment [SEP] R,B-PlugIn [SEP] GOstats,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-PlugIn [SEP] GOstats","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] GOstats [SEP] B-ProgrammingEnvironment [SEP] R"
18,5,B-ProgrammingEnvironment [SEP] R,B-PlugIn [SEP] Bioconductor,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-PlugIn [SEP] Bioconductor","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] Bioconductor [SEP] B-ProgrammingEnvironment [SEP] R"
18,26,B-ProgrammingEnvironment [SEP] R,B-Citation [SEP] [ 36 ],161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Citation [SEP] [ 36 ]","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-ProgrammingEnvironment [SEP] R"
10,51,B-Version [SEP] 1 . 7 . 4,B-Citation [SEP] [ 37 ],161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 1 . 7 . 4 [SEP] B-Citation [SEP] [ 37 ]","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Citation [SEP] [ 37 ] [SEP] B-Version [SEP] 1 . 7 . 4"
10,45,B-Version [SEP] 1 . 7 . 4,B-Version [SEP] 3 . 1 . 2,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 1 . 7 . 4 [SEP] B-Version [SEP] 3 . 1 . 2","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 3 . 1 . 2 [SEP] B-Version [SEP] 1 . 7 . 4"
10,43,B-Version [SEP] 1 . 7 . 4,B-ProgrammingEnvironment [SEP] R,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 1 . 7 . 4 [SEP] B-ProgrammingEnvironment [SEP] R","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Version [SEP] 1 . 7 . 4"
10,38,B-Version [SEP] 1 . 7 . 4,B-Version [SEP] 2 . 1,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 1 . 7 . 4 [SEP] B-Version [SEP] 2 . 1","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 2 . 1 [SEP] B-Version [SEP] 1 . 7 . 4"
10,33,B-Version [SEP] 1 . 7 . 4,B-PlugIn [SEP] KEGG . db,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 1 . 7 . 4 [SEP] B-PlugIn [SEP] KEGG . db","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] KEGG . db [SEP] B-Version [SEP] 1 . 7 . 4"
10,31,B-Version [SEP] 1 . 7 . 4,B-PlugIn [SEP] Bioconductor,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 1 . 7 . 4 [SEP] B-PlugIn [SEP] Bioconductor","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] Bioconductor [SEP] B-Version [SEP] 1 . 7 . 4"
10,20,B-Version [SEP] 1 . 7 . 4,B-Version [SEP] 3 . 1 . 2,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 1 . 7 . 4 [SEP] B-Version [SEP] 3 . 1 . 2","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 3 . 1 . 2 [SEP] B-Version [SEP] 1 . 7 . 4"
10,18,B-Version [SEP] 1 . 7 . 4,B-ProgrammingEnvironment [SEP] R,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 1 . 7 . 4 [SEP] B-ProgrammingEnvironment [SEP] R","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Version [SEP] 1 . 7 . 4"
10,7,B-Version [SEP] 1 . 7 . 4,B-PlugIn [SEP] GOstats,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 1 . 7 . 4 [SEP] B-PlugIn [SEP] GOstats","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] GOstats [SEP] B-Version [SEP] 1 . 7 . 4"
10,5,B-Version [SEP] 1 . 7 . 4,B-PlugIn [SEP] Bioconductor,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 1 . 7 . 4 [SEP] B-PlugIn [SEP] Bioconductor","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] Bioconductor [SEP] B-Version [SEP] 1 . 7 . 4"
10,26,B-Version [SEP] 1 . 7 . 4,B-Citation [SEP] [ 36 ],161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 1 . 7 . 4 [SEP] B-Citation [SEP] [ 36 ]","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-Version [SEP] 1 . 7 . 4"
7,51,B-PlugIn [SEP] GOstats,B-Citation [SEP] [ 37 ],161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] GOstats [SEP] B-Citation [SEP] [ 37 ]","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Citation [SEP] [ 37 ] [SEP] B-PlugIn [SEP] GOstats"
7,45,B-PlugIn [SEP] GOstats,B-Version [SEP] 3 . 1 . 2,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] GOstats [SEP] B-Version [SEP] 3 . 1 . 2","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 3 . 1 . 2 [SEP] B-PlugIn [SEP] GOstats"
7,43,B-PlugIn [SEP] GOstats,B-ProgrammingEnvironment [SEP] R,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] GOstats [SEP] B-ProgrammingEnvironment [SEP] R","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-PlugIn [SEP] GOstats"
7,38,B-PlugIn [SEP] GOstats,B-Version [SEP] 2 . 1,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] GOstats [SEP] B-Version [SEP] 2 . 1","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 2 . 1 [SEP] B-PlugIn [SEP] GOstats"
7,33,B-PlugIn [SEP] GOstats,B-PlugIn [SEP] KEGG . db,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] GOstats [SEP] B-PlugIn [SEP] KEGG . db","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] KEGG . db [SEP] B-PlugIn [SEP] GOstats"
7,31,B-PlugIn [SEP] GOstats,B-PlugIn [SEP] Bioconductor,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] GOstats [SEP] B-PlugIn [SEP] Bioconductor","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] Bioconductor [SEP] B-PlugIn [SEP] GOstats"
7,20,B-PlugIn [SEP] GOstats,B-Version [SEP] 3 . 1 . 2,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] GOstats [SEP] B-Version [SEP] 3 . 1 . 2","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 3 . 1 . 2 [SEP] B-PlugIn [SEP] GOstats"
7,18,B-PlugIn [SEP] GOstats,B-ProgrammingEnvironment [SEP] R,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] GOstats [SEP] B-ProgrammingEnvironment [SEP] R","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-PlugIn [SEP] GOstats"
7,10,B-PlugIn [SEP] GOstats,B-Version [SEP] 1 . 7 . 4,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] GOstats [SEP] B-Version [SEP] 1 . 7 . 4","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 1 . 7 . 4 [SEP] B-PlugIn [SEP] GOstats"
7,5,B-PlugIn [SEP] GOstats,B-PlugIn [SEP] Bioconductor,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] GOstats [SEP] B-PlugIn [SEP] Bioconductor","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] Bioconductor [SEP] B-PlugIn [SEP] GOstats"
7,26,B-PlugIn [SEP] GOstats,B-Citation [SEP] [ 36 ],161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] GOstats [SEP] B-Citation [SEP] [ 36 ]","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-PlugIn [SEP] GOstats"
5,51,B-PlugIn [SEP] Bioconductor,B-Citation [SEP] [ 37 ],161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] Bioconductor [SEP] B-Citation [SEP] [ 37 ]","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Citation [SEP] [ 37 ] [SEP] B-PlugIn [SEP] Bioconductor"
5,45,B-PlugIn [SEP] Bioconductor,B-Version [SEP] 3 . 1 . 2,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] Bioconductor [SEP] B-Version [SEP] 3 . 1 . 2","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 3 . 1 . 2 [SEP] B-PlugIn [SEP] Bioconductor"
5,43,B-PlugIn [SEP] Bioconductor,B-ProgrammingEnvironment [SEP] R,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] Bioconductor [SEP] B-ProgrammingEnvironment [SEP] R","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-PlugIn [SEP] Bioconductor"
5,38,B-PlugIn [SEP] Bioconductor,B-Version [SEP] 2 . 1,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] Bioconductor [SEP] B-Version [SEP] 2 . 1","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 2 . 1 [SEP] B-PlugIn [SEP] Bioconductor"
5,33,B-PlugIn [SEP] Bioconductor,B-PlugIn [SEP] KEGG . db,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] Bioconductor [SEP] B-PlugIn [SEP] KEGG . db","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] KEGG . db [SEP] B-PlugIn [SEP] Bioconductor"
5,20,B-PlugIn [SEP] Bioconductor,B-Version [SEP] 3 . 1 . 2,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] Bioconductor [SEP] B-Version [SEP] 3 . 1 . 2","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 3 . 1 . 2 [SEP] B-PlugIn [SEP] Bioconductor"
5,18,B-PlugIn [SEP] Bioconductor,B-ProgrammingEnvironment [SEP] R,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] Bioconductor [SEP] B-ProgrammingEnvironment [SEP] R","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-PlugIn [SEP] Bioconductor"
5,10,B-PlugIn [SEP] Bioconductor,B-Version [SEP] 1 . 7 . 4,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] Bioconductor [SEP] B-Version [SEP] 1 . 7 . 4","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 1 . 7 . 4 [SEP] B-PlugIn [SEP] Bioconductor"
5,7,B-PlugIn [SEP] Bioconductor,B-PlugIn [SEP] GOstats,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] Bioconductor [SEP] B-PlugIn [SEP] GOstats","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] GOstats [SEP] B-PlugIn [SEP] Bioconductor"
5,26,B-PlugIn [SEP] Bioconductor,B-Citation [SEP] [ 36 ],161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] Bioconductor [SEP] B-Citation [SEP] [ 36 ]","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-PlugIn [SEP] Bioconductor"
26,51,B-Citation [SEP] [ 36 ],B-Citation [SEP] [ 37 ],161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-Citation [SEP] [ 37 ]","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Citation [SEP] [ 37 ] [SEP] B-Citation [SEP] [ 36 ]"
26,45,B-Citation [SEP] [ 36 ],B-Version [SEP] 3 . 1 . 2,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-Version [SEP] 3 . 1 . 2","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 3 . 1 . 2 [SEP] B-Citation [SEP] [ 36 ]"
26,43,B-Citation [SEP] [ 36 ],B-ProgrammingEnvironment [SEP] R,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-ProgrammingEnvironment [SEP] R","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Citation [SEP] [ 36 ]"
26,38,B-Citation [SEP] [ 36 ],B-Version [SEP] 2 . 1,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-Version [SEP] 2 . 1","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 2 . 1 [SEP] B-Citation [SEP] [ 36 ]"
26,33,B-Citation [SEP] [ 36 ],B-PlugIn [SEP] KEGG . db,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-PlugIn [SEP] KEGG . db","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] KEGG . db [SEP] B-Citation [SEP] [ 36 ]"
26,31,B-Citation [SEP] [ 36 ],B-PlugIn [SEP] Bioconductor,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-PlugIn [SEP] Bioconductor","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] Bioconductor [SEP] B-Citation [SEP] [ 36 ]"
26,20,B-Citation [SEP] [ 36 ],B-Version [SEP] 3 . 1 . 2,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-Version [SEP] 3 . 1 . 2","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 3 . 1 . 2 [SEP] B-Citation [SEP] [ 36 ]"
26,18,B-Citation [SEP] [ 36 ],B-ProgrammingEnvironment [SEP] R,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-ProgrammingEnvironment [SEP] R","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-ProgrammingEnvironment [SEP] R [SEP] B-Citation [SEP] [ 36 ]"
26,10,B-Citation [SEP] [ 36 ],B-Version [SEP] 1 . 7 . 4,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-Version [SEP] 1 . 7 . 4","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Version [SEP] 1 . 7 . 4 [SEP] B-Citation [SEP] [ 36 ]"
26,7,B-Citation [SEP] [ 36 ],B-PlugIn [SEP] GOstats,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-PlugIn [SEP] GOstats","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] GOstats [SEP] B-Citation [SEP] [ 36 ]"
26,5,B-Citation [SEP] [ 36 ],B-PlugIn [SEP] Bioconductor,161,"We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] .","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-Citation [SEP] [ 36 ] [SEP] B-PlugIn [SEP] Bioconductor","We used tools from the Bioconductor package GOstats ( version 1 . 7 . 4 , run on R version 3 . 1 . 2 ) [ 36 ] and the Bioconductor package KEGG . db ( version 2 . 1 run on R version 3 . 1 . 2 ) [ 37 ] . [SEP] B-PlugIn [SEP] Bioconductor [SEP] B-Citation [SEP] [ 36 ]"
18,20,B-Application [SEP] PANTHER,B-Citation [SEP] [ 17 ],162,The identified proteins and phosphoproteins in all three cell lines were grouped based on their class using the PANTHER system [ 17 ] as presented in supplementary Figure S1 .,The identified proteins and phosphoproteins in all three cell lines were grouped based on their class using the PANTHER system [ 17 ] as presented in supplementary Figure S1 . [SEP] B-Application [SEP] PANTHER [SEP] B-Citation [SEP] [ 17 ],The identified proteins and phosphoproteins in all three cell lines were grouped based on their class using the PANTHER system [ 17 ] as presented in supplementary Figure S1 . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Application [SEP] PANTHER
20,18,B-Citation [SEP] [ 17 ],B-Application [SEP] PANTHER,162,The identified proteins and phosphoproteins in all three cell lines were grouped based on their class using the PANTHER system [ 17 ] as presented in supplementary Figure S1 .,The identified proteins and phosphoproteins in all three cell lines were grouped based on their class using the PANTHER system [ 17 ] as presented in supplementary Figure S1 . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Application [SEP] PANTHER,The identified proteins and phosphoproteins in all three cell lines were grouped based on their class using the PANTHER system [ 17 ] as presented in supplementary Figure S1 . [SEP] B-Application [SEP] PANTHER [SEP] B-Citation [SEP] [ 17 ]
17,19,B-Application [SEP] DAVID,B-Citation [SEP] [ 19 ],163,We have examined the differentially expressed proteins and phosphoproteins and their involvement in pathway enrichment analysis using DAVID software [ 19 ] .,We have examined the differentially expressed proteins and phosphoproteins and their involvement in pathway enrichment analysis using DAVID software [ 19 ] . [SEP] B-Application [SEP] DAVID [SEP] B-Citation [SEP] [ 19 ],We have examined the differentially expressed proteins and phosphoproteins and their involvement in pathway enrichment analysis using DAVID software [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Application [SEP] DAVID
19,17,B-Citation [SEP] [ 19 ],B-Application [SEP] DAVID,163,We have examined the differentially expressed proteins and phosphoproteins and their involvement in pathway enrichment analysis using DAVID software [ 19 ] .,We have examined the differentially expressed proteins and phosphoproteins and their involvement in pathway enrichment analysis using DAVID software [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Application [SEP] DAVID,We have examined the differentially expressed proteins and phosphoproteins and their involvement in pathway enrichment analysis using DAVID software [ 19 ] . [SEP] B-Application [SEP] DAVID [SEP] B-Citation [SEP] [ 19 ]
16,9,B-Developer [SEP] Integrated Proteomics Applications,B-Application [SEP] Integrated Proteomics Pipeline,164,Peptide / protein identification and quantification were performed using Integrated Proteomics Pipeline - IP 2 ( Integrated Proteomics Applications ) .,Peptide / protein identification and quantification were performed using Integrated Proteomics Pipeline - IP 2 ( Integrated Proteomics Applications ) . [SEP] B-Developer [SEP] Integrated Proteomics Applications [SEP] B-Application [SEP] Integrated Proteomics Pipeline,Peptide / protein identification and quantification were performed using Integrated Proteomics Pipeline - IP 2 ( Integrated Proteomics Applications ) . [SEP] B-Application [SEP] Integrated Proteomics Pipeline [SEP] B-Developer [SEP] Integrated Proteomics Applications
16,14,B-Developer [SEP] Integrated Proteomics Applications,B-Version [SEP] 2,164,Peptide / protein identification and quantification were performed using Integrated Proteomics Pipeline - IP 2 ( Integrated Proteomics Applications ) .,Peptide / protein identification and quantification were performed using Integrated Proteomics Pipeline - IP 2 ( Integrated Proteomics Applications ) . [SEP] B-Developer [SEP] Integrated Proteomics Applications [SEP] B-Version [SEP] 2,Peptide / protein identification and quantification were performed using Integrated Proteomics Pipeline - IP 2 ( Integrated Proteomics Applications ) . [SEP] B-Version [SEP] 2 [SEP] B-Developer [SEP] Integrated Proteomics Applications
9,16,B-Application [SEP] Integrated Proteomics Pipeline,B-Developer [SEP] Integrated Proteomics Applications,164,Peptide / protein identification and quantification were performed using Integrated Proteomics Pipeline - IP 2 ( Integrated Proteomics Applications ) .,Peptide / protein identification and quantification were performed using Integrated Proteomics Pipeline - IP 2 ( Integrated Proteomics Applications ) . [SEP] B-Application [SEP] Integrated Proteomics Pipeline [SEP] B-Developer [SEP] Integrated Proteomics Applications,Peptide / protein identification and quantification were performed using Integrated Proteomics Pipeline - IP 2 ( Integrated Proteomics Applications ) . [SEP] B-Developer [SEP] Integrated Proteomics Applications [SEP] B-Application [SEP] Integrated Proteomics Pipeline
9,14,B-Application [SEP] Integrated Proteomics Pipeline,B-Version [SEP] 2,164,Peptide / protein identification and quantification were performed using Integrated Proteomics Pipeline - IP 2 ( Integrated Proteomics Applications ) .,Peptide / protein identification and quantification were performed using Integrated Proteomics Pipeline - IP 2 ( Integrated Proteomics Applications ) . [SEP] B-Application [SEP] Integrated Proteomics Pipeline [SEP] B-Version [SEP] 2,Peptide / protein identification and quantification were performed using Integrated Proteomics Pipeline - IP 2 ( Integrated Proteomics Applications ) . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] Integrated Proteomics Pipeline
14,16,B-Version [SEP] 2,B-Developer [SEP] Integrated Proteomics Applications,164,Peptide / protein identification and quantification were performed using Integrated Proteomics Pipeline - IP 2 ( Integrated Proteomics Applications ) .,Peptide / protein identification and quantification were performed using Integrated Proteomics Pipeline - IP 2 ( Integrated Proteomics Applications ) . [SEP] B-Version [SEP] 2 [SEP] B-Developer [SEP] Integrated Proteomics Applications,Peptide / protein identification and quantification were performed using Integrated Proteomics Pipeline - IP 2 ( Integrated Proteomics Applications ) . [SEP] B-Developer [SEP] Integrated Proteomics Applications [SEP] B-Version [SEP] 2
14,9,B-Version [SEP] 2,B-Application [SEP] Integrated Proteomics Pipeline,164,Peptide / protein identification and quantification were performed using Integrated Proteomics Pipeline - IP 2 ( Integrated Proteomics Applications ) .,Peptide / protein identification and quantification were performed using Integrated Proteomics Pipeline - IP 2 ( Integrated Proteomics Applications ) . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] Integrated Proteomics Pipeline,Peptide / protein identification and quantification were performed using Integrated Proteomics Pipeline - IP 2 ( Integrated Proteomics Applications ) . [SEP] B-Application [SEP] Integrated Proteomics Pipeline [SEP] B-Version [SEP] 2
12,11,B-Citation [SEP] [ 50 ],B-Application [SEP] RawConverter,165,The MS raw data files were converted into mzXML format using RawConverter [ 50 ] .,The MS raw data files were converted into mzXML format using RawConverter [ 50 ] . [SEP] B-Citation [SEP] [ 50 ] [SEP] B-Application [SEP] RawConverter,The MS raw data files were converted into mzXML format using RawConverter [ 50 ] . [SEP] B-Application [SEP] RawConverter [SEP] B-Citation [SEP] [ 50 ]
12,1,B-Citation [SEP] [ 50 ],B-Application [SEP] MS,165,The MS raw data files were converted into mzXML format using RawConverter [ 50 ] .,The MS raw data files were converted into mzXML format using RawConverter [ 50 ] . [SEP] B-Citation [SEP] [ 50 ] [SEP] B-Application [SEP] MS,The MS raw data files were converted into mzXML format using RawConverter [ 50 ] . [SEP] B-Application [SEP] MS [SEP] B-Citation [SEP] [ 50 ]
11,12,B-Application [SEP] RawConverter,B-Citation [SEP] [ 50 ],165,The MS raw data files were converted into mzXML format using RawConverter [ 50 ] .,The MS raw data files were converted into mzXML format using RawConverter [ 50 ] . [SEP] B-Application [SEP] RawConverter [SEP] B-Citation [SEP] [ 50 ],The MS raw data files were converted into mzXML format using RawConverter [ 50 ] . [SEP] B-Citation [SEP] [ 50 ] [SEP] B-Application [SEP] RawConverter
11,1,B-Application [SEP] RawConverter,B-Application [SEP] MS,165,The MS raw data files were converted into mzXML format using RawConverter [ 50 ] .,The MS raw data files were converted into mzXML format using RawConverter [ 50 ] . [SEP] B-Application [SEP] RawConverter [SEP] B-Application [SEP] MS,The MS raw data files were converted into mzXML format using RawConverter [ 50 ] . [SEP] B-Application [SEP] MS [SEP] B-Application [SEP] RawConverter
1,12,B-Application [SEP] MS,B-Citation [SEP] [ 50 ],165,The MS raw data files were converted into mzXML format using RawConverter [ 50 ] .,The MS raw data files were converted into mzXML format using RawConverter [ 50 ] . [SEP] B-Application [SEP] MS [SEP] B-Citation [SEP] [ 50 ],The MS raw data files were converted into mzXML format using RawConverter [ 50 ] . [SEP] B-Citation [SEP] [ 50 ] [SEP] B-Application [SEP] MS
1,11,B-Application [SEP] MS,B-Application [SEP] RawConverter,165,The MS raw data files were converted into mzXML format using RawConverter [ 50 ] .,The MS raw data files were converted into mzXML format using RawConverter [ 50 ] . [SEP] B-Application [SEP] MS [SEP] B-Application [SEP] RawConverter,The MS raw data files were converted into mzXML format using RawConverter [ 50 ] . [SEP] B-Application [SEP] RawConverter [SEP] B-Application [SEP] MS
13,23,B-Application [SEP] the,B-Application [SEP] using,166,"For protein identification , tandem mass spectra were searched against a database including the Uniprot human database , reversed sequences , and contaminate using ProLuCID [ 51 ] .","For protein identification , tandem mass spectra were searched against a database including the Uniprot human database , reversed sequences , and contaminate using ProLuCID [ 51 ] . [SEP] B-Application [SEP] the [SEP] B-Application [SEP] using","For protein identification , tandem mass spectra were searched against a database including the Uniprot human database , reversed sequences , and contaminate using ProLuCID [ 51 ] . [SEP] B-Application [SEP] using [SEP] B-Application [SEP] the"
13,24,B-Application [SEP] the,B-Citation [SEP] ProLuCID [ 51,166,"For protein identification , tandem mass spectra were searched against a database including the Uniprot human database , reversed sequences , and contaminate using ProLuCID [ 51 ] .","For protein identification , tandem mass spectra were searched against a database including the Uniprot human database , reversed sequences , and contaminate using ProLuCID [ 51 ] . [SEP] B-Application [SEP] the [SEP] B-Citation [SEP] ProLuCID [ 51","For protein identification , tandem mass spectra were searched against a database including the Uniprot human database , reversed sequences , and contaminate using ProLuCID [ 51 ] . [SEP] B-Citation [SEP] ProLuCID [ 51 [SEP] B-Application [SEP] the"
23,13,B-Application [SEP] using,B-Application [SEP] the,166,"For protein identification , tandem mass spectra were searched against a database including the Uniprot human database , reversed sequences , and contaminate using ProLuCID [ 51 ] .","For protein identification , tandem mass spectra were searched against a database including the Uniprot human database , reversed sequences , and contaminate using ProLuCID [ 51 ] . [SEP] B-Application [SEP] using [SEP] B-Application [SEP] the","For protein identification , tandem mass spectra were searched against a database including the Uniprot human database , reversed sequences , and contaminate using ProLuCID [ 51 ] . [SEP] B-Application [SEP] the [SEP] B-Application [SEP] using"
23,24,B-Application [SEP] using,B-Citation [SEP] ProLuCID [ 51,166,"For protein identification , tandem mass spectra were searched against a database including the Uniprot human database , reversed sequences , and contaminate using ProLuCID [ 51 ] .","For protein identification , tandem mass spectra were searched against a database including the Uniprot human database , reversed sequences , and contaminate using ProLuCID [ 51 ] . [SEP] B-Application [SEP] using [SEP] B-Citation [SEP] ProLuCID [ 51","For protein identification , tandem mass spectra were searched against a database including the Uniprot human database , reversed sequences , and contaminate using ProLuCID [ 51 ] . [SEP] B-Citation [SEP] ProLuCID [ 51 [SEP] B-Application [SEP] using"
24,13,B-Citation [SEP] ProLuCID [ 51,B-Application [SEP] the,166,"For protein identification , tandem mass spectra were searched against a database including the Uniprot human database , reversed sequences , and contaminate using ProLuCID [ 51 ] .","For protein identification , tandem mass spectra were searched against a database including the Uniprot human database , reversed sequences , and contaminate using ProLuCID [ 51 ] . [SEP] B-Citation [SEP] ProLuCID [ 51 [SEP] B-Application [SEP] the","For protein identification , tandem mass spectra were searched against a database including the Uniprot human database , reversed sequences , and contaminate using ProLuCID [ 51 ] . [SEP] B-Application [SEP] the [SEP] B-Citation [SEP] ProLuCID [ 51"
24,23,B-Citation [SEP] ProLuCID [ 51,B-Application [SEP] using,166,"For protein identification , tandem mass spectra were searched against a database including the Uniprot human database , reversed sequences , and contaminate using ProLuCID [ 51 ] .","For protein identification , tandem mass spectra were searched against a database including the Uniprot human database , reversed sequences , and contaminate using ProLuCID [ 51 ] . [SEP] B-Citation [SEP] ProLuCID [ 51 [SEP] B-Application [SEP] using","For protein identification , tandem mass spectra were searched against a database including the Uniprot human database , reversed sequences , and contaminate using ProLuCID [ 51 ] . [SEP] B-Application [SEP] using [SEP] B-Citation [SEP] ProLuCID [ 51"
15,16,B-Application [SEP] DTASelect,B-Citation [SEP] [ 52 ],167,Identified proteins were further filtered with 1 % false discovery rate ( FDR ) using DTASelect [ 52 ] .,Identified proteins were further filtered with 1 % false discovery rate ( FDR ) using DTASelect [ 52 ] . [SEP] B-Application [SEP] DTASelect [SEP] B-Citation [SEP] [ 52 ],Identified proteins were further filtered with 1 % false discovery rate ( FDR ) using DTASelect [ 52 ] . [SEP] B-Citation [SEP] [ 52 ] [SEP] B-Application [SEP] DTASelect
16,15,B-Citation [SEP] [ 52 ],B-Application [SEP] DTASelect,167,Identified proteins were further filtered with 1 % false discovery rate ( FDR ) using DTASelect [ 52 ] .,Identified proteins were further filtered with 1 % false discovery rate ( FDR ) using DTASelect [ 52 ] . [SEP] B-Citation [SEP] [ 52 ] [SEP] B-Application [SEP] DTASelect,Identified proteins were further filtered with 1 % false discovery rate ( FDR ) using DTASelect [ 52 ] . [SEP] B-Application [SEP] DTASelect [SEP] B-Citation [SEP] [ 52 ]
6,8,B-Application [SEP] Census tool,B-Citation [SEP] [ 53 ],168,Protein quantitative analysis was achieved by Census tool [ 53 ] .,Protein quantitative analysis was achieved by Census tool [ 53 ] . [SEP] B-Application [SEP] Census tool [SEP] B-Citation [SEP] [ 53 ],Protein quantitative analysis was achieved by Census tool [ 53 ] . [SEP] B-Citation [SEP] [ 53 ] [SEP] B-Application [SEP] Census tool
8,6,B-Citation [SEP] [ 53 ],B-Application [SEP] Census tool,168,Protein quantitative analysis was achieved by Census tool [ 53 ] .,Protein quantitative analysis was achieved by Census tool [ 53 ] . [SEP] B-Citation [SEP] [ 53 ] [SEP] B-Application [SEP] Census tool,Protein quantitative analysis was achieved by Census tool [ 53 ] . [SEP] B-Application [SEP] Census tool [SEP] B-Citation [SEP] [ 53 ]
11,16,B-PlugIn [SEP] COMPARE,B-Application [SEP] IP,169,"The statistical analysis for the quantitative results was done by quantitative COMPARE tool , part of IP 2 .","The statistical analysis for the quantitative results was done by quantitative COMPARE tool , part of IP 2 . [SEP] B-PlugIn [SEP] COMPARE [SEP] B-Application [SEP] IP","The statistical analysis for the quantitative results was done by quantitative COMPARE tool , part of IP 2 . [SEP] B-Application [SEP] IP [SEP] B-PlugIn [SEP] COMPARE"
11,17,B-PlugIn [SEP] COMPARE,B-Version [SEP] 2,169,"The statistical analysis for the quantitative results was done by quantitative COMPARE tool , part of IP 2 .","The statistical analysis for the quantitative results was done by quantitative COMPARE tool , part of IP 2 . [SEP] B-PlugIn [SEP] COMPARE [SEP] B-Version [SEP] 2","The statistical analysis for the quantitative results was done by quantitative COMPARE tool , part of IP 2 . [SEP] B-Version [SEP] 2 [SEP] B-PlugIn [SEP] COMPARE"
16,11,B-Application [SEP] IP,B-PlugIn [SEP] COMPARE,169,"The statistical analysis for the quantitative results was done by quantitative COMPARE tool , part of IP 2 .","The statistical analysis for the quantitative results was done by quantitative COMPARE tool , part of IP 2 . [SEP] B-Application [SEP] IP [SEP] B-PlugIn [SEP] COMPARE","The statistical analysis for the quantitative results was done by quantitative COMPARE tool , part of IP 2 . [SEP] B-PlugIn [SEP] COMPARE [SEP] B-Application [SEP] IP"
16,17,B-Application [SEP] IP,B-Version [SEP] 2,169,"The statistical analysis for the quantitative results was done by quantitative COMPARE tool , part of IP 2 .","The statistical analysis for the quantitative results was done by quantitative COMPARE tool , part of IP 2 . [SEP] B-Application [SEP] IP [SEP] B-Version [SEP] 2","The statistical analysis for the quantitative results was done by quantitative COMPARE tool , part of IP 2 . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] IP"
17,11,B-Version [SEP] 2,B-PlugIn [SEP] COMPARE,169,"The statistical analysis for the quantitative results was done by quantitative COMPARE tool , part of IP 2 .","The statistical analysis for the quantitative results was done by quantitative COMPARE tool , part of IP 2 . [SEP] B-Version [SEP] 2 [SEP] B-PlugIn [SEP] COMPARE","The statistical analysis for the quantitative results was done by quantitative COMPARE tool , part of IP 2 . [SEP] B-PlugIn [SEP] COMPARE [SEP] B-Version [SEP] 2"
17,16,B-Version [SEP] 2,B-Application [SEP] IP,169,"The statistical analysis for the quantitative results was done by quantitative COMPARE tool , part of IP 2 .","The statistical analysis for the quantitative results was done by quantitative COMPARE tool , part of IP 2 . [SEP] B-Version [SEP] 2 [SEP] B-Application [SEP] IP","The statistical analysis for the quantitative results was done by quantitative COMPARE tool , part of IP 2 . [SEP] B-Application [SEP] IP [SEP] B-Version [SEP] 2"
15,9,B-Abbreviation [SEP] PANTHER,B-Application [SEP] Protein Analysis THrough Evolutionary Relationships,170,Go enrichment analysis for protein classification was performed using Protein Analysis THrough Evolutionary Relationships ( PANTHER ) system .,Go enrichment analysis for protein classification was performed using Protein Analysis THrough Evolutionary Relationships ( PANTHER ) system . [SEP] B-Abbreviation [SEP] PANTHER [SEP] B-Application [SEP] Protein Analysis THrough Evolutionary Relationships,Go enrichment analysis for protein classification was performed using Protein Analysis THrough Evolutionary Relationships ( PANTHER ) system . [SEP] B-Application [SEP] Protein Analysis THrough Evolutionary Relationships [SEP] B-Abbreviation [SEP] PANTHER
9,15,B-Application [SEP] Protein Analysis THrough Evolutionary Relationships,B-Abbreviation [SEP] PANTHER,170,Go enrichment analysis for protein classification was performed using Protein Analysis THrough Evolutionary Relationships ( PANTHER ) system .,Go enrichment analysis for protein classification was performed using Protein Analysis THrough Evolutionary Relationships ( PANTHER ) system . [SEP] B-Application [SEP] Protein Analysis THrough Evolutionary Relationships [SEP] B-Abbreviation [SEP] PANTHER,Go enrichment analysis for protein classification was performed using Protein Analysis THrough Evolutionary Relationships ( PANTHER ) system . [SEP] B-Abbreviation [SEP] PANTHER [SEP] B-Application [SEP] Protein Analysis THrough Evolutionary Relationships
8,18,"B-Application [SEP] Database for Annotation , Visualization , and Integrated Discovery",B-Abbreviation [SEP] DAVID,171,"The pathway enrichment analysis was generated using the Database for Annotation , Visualization , and Integrated Discovery ( DAVID ) software .","The pathway enrichment analysis was generated using the Database for Annotation , Visualization , and Integrated Discovery ( DAVID ) software . [SEP] B-Application [SEP] Database for Annotation , Visualization , and Integrated Discovery [SEP] B-Abbreviation [SEP] DAVID","The pathway enrichment analysis was generated using the Database for Annotation , Visualization , and Integrated Discovery ( DAVID ) software . [SEP] B-Abbreviation [SEP] DAVID [SEP] B-Application [SEP] Database for Annotation , Visualization , and Integrated Discovery"
18,8,B-Abbreviation [SEP] DAVID,"B-Application [SEP] Database for Annotation , Visualization , and Integrated Discovery",171,"The pathway enrichment analysis was generated using the Database for Annotation , Visualization , and Integrated Discovery ( DAVID ) software .","The pathway enrichment analysis was generated using the Database for Annotation , Visualization , and Integrated Discovery ( DAVID ) software . [SEP] B-Abbreviation [SEP] DAVID [SEP] B-Application [SEP] Database for Annotation , Visualization , and Integrated Discovery","The pathway enrichment analysis was generated using the Database for Annotation , Visualization , and Integrated Discovery ( DAVID ) software . [SEP] B-Application [SEP] Database for Annotation , Visualization , and Integrated Discovery [SEP] B-Abbreviation [SEP] DAVID"
7,14,B-Application [SEP] Tableau,B-Version [SEP] 2018 . 1 . 1,172,"For treemap and Volcano plots visualization , Tableau software was used ( v . 2018 . 1 . 1 , Tableau , WA , USA ) .","For treemap and Volcano plots visualization , Tableau software was used ( v . 2018 . 1 . 1 , Tableau , WA , USA ) . [SEP] B-Application [SEP] Tableau [SEP] B-Version [SEP] 2018 . 1 . 1","For treemap and Volcano plots visualization , Tableau software was used ( v . 2018 . 1 . 1 , Tableau , WA , USA ) . [SEP] B-Version [SEP] 2018 . 1 . 1 [SEP] B-Application [SEP] Tableau"
7,20,B-Application [SEP] Tableau,B-Developer [SEP] Tableau,172,"For treemap and Volcano plots visualization , Tableau software was used ( v . 2018 . 1 . 1 , Tableau , WA , USA ) .","For treemap and Volcano plots visualization , Tableau software was used ( v . 2018 . 1 . 1 , Tableau , WA , USA ) . [SEP] B-Application [SEP] Tableau [SEP] B-Developer [SEP] Tableau","For treemap and Volcano plots visualization , Tableau software was used ( v . 2018 . 1 . 1 , Tableau , WA , USA ) . [SEP] B-Developer [SEP] Tableau [SEP] B-Application [SEP] Tableau"
14,7,B-Version [SEP] 2018 . 1 . 1,B-Application [SEP] Tableau,172,"For treemap and Volcano plots visualization , Tableau software was used ( v . 2018 . 1 . 1 , Tableau , WA , USA ) .","For treemap and Volcano plots visualization , Tableau software was used ( v . 2018 . 1 . 1 , Tableau , WA , USA ) . [SEP] B-Version [SEP] 2018 . 1 . 1 [SEP] B-Application [SEP] Tableau","For treemap and Volcano plots visualization , Tableau software was used ( v . 2018 . 1 . 1 , Tableau , WA , USA ) . [SEP] B-Application [SEP] Tableau [SEP] B-Version [SEP] 2018 . 1 . 1"
14,20,B-Version [SEP] 2018 . 1 . 1,B-Developer [SEP] Tableau,172,"For treemap and Volcano plots visualization , Tableau software was used ( v . 2018 . 1 . 1 , Tableau , WA , USA ) .","For treemap and Volcano plots visualization , Tableau software was used ( v . 2018 . 1 . 1 , Tableau , WA , USA ) . [SEP] B-Version [SEP] 2018 . 1 . 1 [SEP] B-Developer [SEP] Tableau","For treemap and Volcano plots visualization , Tableau software was used ( v . 2018 . 1 . 1 , Tableau , WA , USA ) . [SEP] B-Developer [SEP] Tableau [SEP] B-Version [SEP] 2018 . 1 . 1"
20,7,B-Developer [SEP] Tableau,B-Application [SEP] Tableau,172,"For treemap and Volcano plots visualization , Tableau software was used ( v . 2018 . 1 . 1 , Tableau , WA , USA ) .","For treemap and Volcano plots visualization , Tableau software was used ( v . 2018 . 1 . 1 , Tableau , WA , USA ) . [SEP] B-Developer [SEP] Tableau [SEP] B-Application [SEP] Tableau","For treemap and Volcano plots visualization , Tableau software was used ( v . 2018 . 1 . 1 , Tableau , WA , USA ) . [SEP] B-Application [SEP] Tableau [SEP] B-Developer [SEP] Tableau"
20,14,B-Developer [SEP] Tableau,B-Version [SEP] 2018 . 1 . 1,172,"For treemap and Volcano plots visualization , Tableau software was used ( v . 2018 . 1 . 1 , Tableau , WA , USA ) .","For treemap and Volcano plots visualization , Tableau software was used ( v . 2018 . 1 . 1 , Tableau , WA , USA ) . [SEP] B-Developer [SEP] Tableau [SEP] B-Version [SEP] 2018 . 1 . 1","For treemap and Volcano plots visualization , Tableau software was used ( v . 2018 . 1 . 1 , Tableau , WA , USA ) . [SEP] B-Version [SEP] 2018 . 1 . 1 [SEP] B-Developer [SEP] Tableau"
6,7,B-Application [SEP] Gaussian,B-Version [SEP] 16 C . 01,173,"Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) .","Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) . [SEP] B-Application [SEP] Gaussian [SEP] B-Version [SEP] 16 C . 01","Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) . [SEP] B-Version [SEP] 16 C . 01 [SEP] B-Application [SEP] Gaussian"
6,12,B-Application [SEP] Gaussian,B-Citation [SEP] [ 25 ],173,"Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) .","Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) . [SEP] B-Application [SEP] Gaussian [SEP] B-Citation [SEP] [ 25 ]","Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Application [SEP] Gaussian"
6,24,B-Application [SEP] Gaussian,B-Application [SEP] AutoDock Vina,173,"Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) .","Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) . [SEP] B-Application [SEP] Gaussian [SEP] B-Application [SEP] AutoDock Vina","Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) . [SEP] B-Application [SEP] AutoDock Vina [SEP] B-Application [SEP] Gaussian"
6,26,B-Application [SEP] Gaussian,B-Citation [SEP] [ 26 ],173,"Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) .","Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) . [SEP] B-Application [SEP] Gaussian [SEP] B-Citation [SEP] [ 26 ]","Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) . [SEP] B-Citation [SEP] [ 26 ] [SEP] B-Application [SEP] Gaussian"
7,6,B-Version [SEP] 16 C . 01,B-Application [SEP] Gaussian,173,"Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) .","Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) . [SEP] B-Version [SEP] 16 C . 01 [SEP] B-Application [SEP] Gaussian","Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) . [SEP] B-Application [SEP] Gaussian [SEP] B-Version [SEP] 16 C . 01"
7,12,B-Version [SEP] 16 C . 01,B-Citation [SEP] [ 25 ],173,"Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) .","Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) . [SEP] B-Version [SEP] 16 C . 01 [SEP] B-Citation [SEP] [ 25 ]","Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Version [SEP] 16 C . 01"
7,24,B-Version [SEP] 16 C . 01,B-Application [SEP] AutoDock Vina,173,"Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) .","Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) . [SEP] B-Version [SEP] 16 C . 01 [SEP] B-Application [SEP] AutoDock Vina","Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) . [SEP] B-Application [SEP] AutoDock Vina [SEP] B-Version [SEP] 16 C . 01"
7,26,B-Version [SEP] 16 C . 01,B-Citation [SEP] [ 26 ],173,"Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) .","Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) . [SEP] B-Version [SEP] 16 C . 01 [SEP] B-Citation [SEP] [ 26 ]","Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) . [SEP] B-Citation [SEP] [ 26 ] [SEP] B-Version [SEP] 16 C . 01"
12,6,B-Citation [SEP] [ 25 ],B-Application [SEP] Gaussian,173,"Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) .","Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Application [SEP] Gaussian","Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) . [SEP] B-Application [SEP] Gaussian [SEP] B-Citation [SEP] [ 25 ]"
12,7,B-Citation [SEP] [ 25 ],B-Version [SEP] 16 C . 01,173,"Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) .","Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Version [SEP] 16 C . 01","Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) . [SEP] B-Version [SEP] 16 C . 01 [SEP] B-Citation [SEP] [ 25 ]"
12,24,B-Citation [SEP] [ 25 ],B-Application [SEP] AutoDock Vina,173,"Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) .","Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Application [SEP] AutoDock Vina","Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) . [SEP] B-Application [SEP] AutoDock Vina [SEP] B-Citation [SEP] [ 25 ]"
12,26,B-Citation [SEP] [ 25 ],B-Citation [SEP] [ 26 ],173,"Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) .","Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Citation [SEP] [ 26 ]","Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) . [SEP] B-Citation [SEP] [ 26 ] [SEP] B-Citation [SEP] [ 25 ]"
24,6,B-Application [SEP] AutoDock Vina,B-Application [SEP] Gaussian,173,"Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) .","Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) . [SEP] B-Application [SEP] AutoDock Vina [SEP] B-Application [SEP] Gaussian","Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) . [SEP] B-Application [SEP] Gaussian [SEP] B-Application [SEP] AutoDock Vina"
24,7,B-Application [SEP] AutoDock Vina,B-Version [SEP] 16 C . 01,173,"Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) .","Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) . [SEP] B-Application [SEP] AutoDock Vina [SEP] B-Version [SEP] 16 C . 01","Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) . [SEP] B-Version [SEP] 16 C . 01 [SEP] B-Application [SEP] AutoDock Vina"
24,12,B-Application [SEP] AutoDock Vina,B-Citation [SEP] [ 25 ],173,"Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) .","Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) . [SEP] B-Application [SEP] AutoDock Vina [SEP] B-Citation [SEP] [ 25 ]","Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Application [SEP] AutoDock Vina"
24,26,B-Application [SEP] AutoDock Vina,B-Citation [SEP] [ 26 ],173,"Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) .","Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) . [SEP] B-Application [SEP] AutoDock Vina [SEP] B-Citation [SEP] [ 26 ]","Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) . [SEP] B-Citation [SEP] [ 26 ] [SEP] B-Application [SEP] AutoDock Vina"
26,6,B-Citation [SEP] [ 26 ],B-Application [SEP] Gaussian,173,"Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) .","Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) . [SEP] B-Citation [SEP] [ 26 ] [SEP] B-Application [SEP] Gaussian","Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) . [SEP] B-Application [SEP] Gaussian [SEP] B-Citation [SEP] [ 26 ]"
26,7,B-Citation [SEP] [ 26 ],B-Version [SEP] 16 C . 01,173,"Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) .","Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) . [SEP] B-Citation [SEP] [ 26 ] [SEP] B-Version [SEP] 16 C . 01","Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) . [SEP] B-Version [SEP] 16 C . 01 [SEP] B-Citation [SEP] [ 26 ]"
26,12,B-Citation [SEP] [ 26 ],B-Citation [SEP] [ 25 ],173,"Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) .","Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) . [SEP] B-Citation [SEP] [ 26 ] [SEP] B-Citation [SEP] [ 25 ]","Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Citation [SEP] [ 26 ]"
26,24,B-Citation [SEP] [ 26 ],B-Application [SEP] AutoDock Vina,173,"Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) .","Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) . [SEP] B-Citation [SEP] [ 26 ] [SEP] B-Application [SEP] AutoDock Vina","Analysing the optimised azole ligands ( Gaussian 16 C . 01 program [ 25 ] ) docked to the protein ( PDB code:3ewh.pdb , AutoDock Vina [ 26 ] ) , we noticed that ligands 1 - 6 and 9 nearly overlapped ( Figure 1 ) . [SEP] B-Application [SEP] AutoDock Vina [SEP] B-Citation [SEP] [ 26 ]"
8,7,B-Version [SEP] 4 1 . 3 .,B-Application [SEP] Psi,174,"For the analysis , we used the Psi 4 1 . 3 . 2 software [ 37 ] treating the complexes ligand - amino acid as a closed - shell system [ 38 , 39 ] and utilizing the recommended jun - cc - pVDZ basis set [ 40 ] .","For the analysis , we used the Psi 4 1 . 3 . 2 software [ 37 ] treating the complexes ligand - amino acid as a closed - shell system [ 38 , 39 ] and utilizing the recommended jun - cc - pVDZ basis set [ 40 ] . [SEP] B-Version [SEP] 4 1 . 3 . [SEP] B-Application [SEP] Psi","For the analysis , we used the Psi 4 1 . 3 . 2 software [ 37 ] treating the complexes ligand - amino acid as a closed - shell system [ 38 , 39 ] and utilizing the recommended jun - cc - pVDZ basis set [ 40 ] . [SEP] B-Application [SEP] Psi [SEP] B-Version [SEP] 4 1 . 3 ."
8,14,B-Version [SEP] 4 1 . 3 .,B-Citation [SEP] software [ 37,174,"For the analysis , we used the Psi 4 1 . 3 . 2 software [ 37 ] treating the complexes ligand - amino acid as a closed - shell system [ 38 , 39 ] and utilizing the recommended jun - cc - pVDZ basis set [ 40 ] .","For the analysis , we used the Psi 4 1 . 3 . 2 software [ 37 ] treating the complexes ligand - amino acid as a closed - shell system [ 38 , 39 ] and utilizing the recommended jun - cc - pVDZ basis set [ 40 ] . [SEP] B-Version [SEP] 4 1 . 3 . [SEP] B-Citation [SEP] software [ 37","For the analysis , we used the Psi 4 1 . 3 . 2 software [ 37 ] treating the complexes ligand - amino acid as a closed - shell system [ 38 , 39 ] and utilizing the recommended jun - cc - pVDZ basis set [ 40 ] . [SEP] B-Citation [SEP] software [ 37 [SEP] B-Version [SEP] 4 1 . 3 ."
7,8,B-Application [SEP] Psi,B-Version [SEP] 4 1 . 3 .,174,"For the analysis , we used the Psi 4 1 . 3 . 2 software [ 37 ] treating the complexes ligand - amino acid as a closed - shell system [ 38 , 39 ] and utilizing the recommended jun - cc - pVDZ basis set [ 40 ] .","For the analysis , we used the Psi 4 1 . 3 . 2 software [ 37 ] treating the complexes ligand - amino acid as a closed - shell system [ 38 , 39 ] and utilizing the recommended jun - cc - pVDZ basis set [ 40 ] . [SEP] B-Application [SEP] Psi [SEP] B-Version [SEP] 4 1 . 3 .","For the analysis , we used the Psi 4 1 . 3 . 2 software [ 37 ] treating the complexes ligand - amino acid as a closed - shell system [ 38 , 39 ] and utilizing the recommended jun - cc - pVDZ basis set [ 40 ] . [SEP] B-Version [SEP] 4 1 . 3 . [SEP] B-Application [SEP] Psi"
7,14,B-Application [SEP] Psi,B-Citation [SEP] software [ 37,174,"For the analysis , we used the Psi 4 1 . 3 . 2 software [ 37 ] treating the complexes ligand - amino acid as a closed - shell system [ 38 , 39 ] and utilizing the recommended jun - cc - pVDZ basis set [ 40 ] .","For the analysis , we used the Psi 4 1 . 3 . 2 software [ 37 ] treating the complexes ligand - amino acid as a closed - shell system [ 38 , 39 ] and utilizing the recommended jun - cc - pVDZ basis set [ 40 ] . [SEP] B-Application [SEP] Psi [SEP] B-Citation [SEP] software [ 37","For the analysis , we used the Psi 4 1 . 3 . 2 software [ 37 ] treating the complexes ligand - amino acid as a closed - shell system [ 38 , 39 ] and utilizing the recommended jun - cc - pVDZ basis set [ 40 ] . [SEP] B-Citation [SEP] software [ 37 [SEP] B-Application [SEP] Psi"
14,8,B-Citation [SEP] software [ 37,B-Version [SEP] 4 1 . 3 .,174,"For the analysis , we used the Psi 4 1 . 3 . 2 software [ 37 ] treating the complexes ligand - amino acid as a closed - shell system [ 38 , 39 ] and utilizing the recommended jun - cc - pVDZ basis set [ 40 ] .","For the analysis , we used the Psi 4 1 . 3 . 2 software [ 37 ] treating the complexes ligand - amino acid as a closed - shell system [ 38 , 39 ] and utilizing the recommended jun - cc - pVDZ basis set [ 40 ] . [SEP] B-Citation [SEP] software [ 37 [SEP] B-Version [SEP] 4 1 . 3 .","For the analysis , we used the Psi 4 1 . 3 . 2 software [ 37 ] treating the complexes ligand - amino acid as a closed - shell system [ 38 , 39 ] and utilizing the recommended jun - cc - pVDZ basis set [ 40 ] . [SEP] B-Version [SEP] 4 1 . 3 . [SEP] B-Citation [SEP] software [ 37"
14,7,B-Citation [SEP] software [ 37,B-Application [SEP] Psi,174,"For the analysis , we used the Psi 4 1 . 3 . 2 software [ 37 ] treating the complexes ligand - amino acid as a closed - shell system [ 38 , 39 ] and utilizing the recommended jun - cc - pVDZ basis set [ 40 ] .","For the analysis , we used the Psi 4 1 . 3 . 2 software [ 37 ] treating the complexes ligand - amino acid as a closed - shell system [ 38 , 39 ] and utilizing the recommended jun - cc - pVDZ basis set [ 40 ] . [SEP] B-Citation [SEP] software [ 37 [SEP] B-Application [SEP] Psi","For the analysis , we used the Psi 4 1 . 3 . 2 software [ 37 ] treating the complexes ligand - amino acid as a closed - shell system [ 38 , 39 ] and utilizing the recommended jun - cc - pVDZ basis set [ 40 ] . [SEP] B-Application [SEP] Psi [SEP] B-Citation [SEP] software [ 37"
37,35,B-Citation [SEP] [ 46 ],B-Application [SEP] GAMESS,175,"For this purpose , we applied the polarizable continuum ( PCM ) solvation model [ 45 ] with water as solvent on the MP 2 / 6 - 31G * level of theory using the GAMESS program [ 46 ] .","For this purpose , we applied the polarizable continuum ( PCM ) solvation model [ 45 ] with water as solvent on the MP 2 / 6 - 31G * level of theory using the GAMESS program [ 46 ] . [SEP] B-Citation [SEP] [ 46 ] [SEP] B-Application [SEP] GAMESS","For this purpose , we applied the polarizable continuum ( PCM ) solvation model [ 45 ] with water as solvent on the MP 2 / 6 - 31G * level of theory using the GAMESS program [ 46 ] . [SEP] B-Application [SEP] GAMESS [SEP] B-Citation [SEP] [ 46 ]"
35,37,B-Application [SEP] GAMESS,B-Citation [SEP] [ 46 ],175,"For this purpose , we applied the polarizable continuum ( PCM ) solvation model [ 45 ] with water as solvent on the MP 2 / 6 - 31G * level of theory using the GAMESS program [ 46 ] .","For this purpose , we applied the polarizable continuum ( PCM ) solvation model [ 45 ] with water as solvent on the MP 2 / 6 - 31G * level of theory using the GAMESS program [ 46 ] . [SEP] B-Application [SEP] GAMESS [SEP] B-Citation [SEP] [ 46 ]","For this purpose , we applied the polarizable continuum ( PCM ) solvation model [ 45 ] with water as solvent on the MP 2 / 6 - 31G * level of theory using the GAMESS program [ 46 ] . [SEP] B-Citation [SEP] [ 46 ] [SEP] B-Application [SEP] GAMESS"
21,22,B-Application [SEP] Mopac,B-Release [SEP] 2016,176,"In this evaluation , we considered values of the final heat of formation ( HOF ) under standard conditions using the Mopac 2016 program and its implemented module Mozyme [ 47 ] .","In this evaluation , we considered values of the final heat of formation ( HOF ) under standard conditions using the Mopac 2016 program and its implemented module Mozyme [ 47 ] . [SEP] B-Application [SEP] Mopac [SEP] B-Release [SEP] 2016","In this evaluation , we considered values of the final heat of formation ( HOF ) under standard conditions using the Mopac 2016 program and its implemented module Mozyme [ 47 ] . [SEP] B-Release [SEP] 2016 [SEP] B-Application [SEP] Mopac"
21,28,B-Application [SEP] Mopac,B-PlugIn [SEP] Mozyme,176,"In this evaluation , we considered values of the final heat of formation ( HOF ) under standard conditions using the Mopac 2016 program and its implemented module Mozyme [ 47 ] .","In this evaluation , we considered values of the final heat of formation ( HOF ) under standard conditions using the Mopac 2016 program and its implemented module Mozyme [ 47 ] . [SEP] B-Application [SEP] Mopac [SEP] B-PlugIn [SEP] Mozyme","In this evaluation , we considered values of the final heat of formation ( HOF ) under standard conditions using the Mopac 2016 program and its implemented module Mozyme [ 47 ] . [SEP] B-PlugIn [SEP] Mozyme [SEP] B-Application [SEP] Mopac"
21,29,B-Application [SEP] Mopac,B-Citation [SEP] [ 47 ],176,"In this evaluation , we considered values of the final heat of formation ( HOF ) under standard conditions using the Mopac 2016 program and its implemented module Mozyme [ 47 ] .","In this evaluation , we considered values of the final heat of formation ( HOF ) under standard conditions using the Mopac 2016 program and its implemented module Mozyme [ 47 ] . [SEP] B-Application [SEP] Mopac [SEP] B-Citation [SEP] [ 47 ]","In this evaluation , we considered values of the final heat of formation ( HOF ) under standard conditions using the Mopac 2016 program and its implemented module Mozyme [ 47 ] . [SEP] B-Citation [SEP] [ 47 ] [SEP] B-Application [SEP] Mopac"
22,21,B-Release [SEP] 2016,B-Application [SEP] Mopac,176,"In this evaluation , we considered values of the final heat of formation ( HOF ) under standard conditions using the Mopac 2016 program and its implemented module Mozyme [ 47 ] .","In this evaluation , we considered values of the final heat of formation ( HOF ) under standard conditions using the Mopac 2016 program and its implemented module Mozyme [ 47 ] . [SEP] B-Release [SEP] 2016 [SEP] B-Application [SEP] Mopac","In this evaluation , we considered values of the final heat of formation ( HOF ) under standard conditions using the Mopac 2016 program and its implemented module Mozyme [ 47 ] . [SEP] B-Application [SEP] Mopac [SEP] B-Release [SEP] 2016"
22,28,B-Release [SEP] 2016,B-PlugIn [SEP] Mozyme,176,"In this evaluation , we considered values of the final heat of formation ( HOF ) under standard conditions using the Mopac 2016 program and its implemented module Mozyme [ 47 ] .","In this evaluation , we considered values of the final heat of formation ( HOF ) under standard conditions using the Mopac 2016 program and its implemented module Mozyme [ 47 ] . [SEP] B-Release [SEP] 2016 [SEP] B-PlugIn [SEP] Mozyme","In this evaluation , we considered values of the final heat of formation ( HOF ) under standard conditions using the Mopac 2016 program and its implemented module Mozyme [ 47 ] . [SEP] B-PlugIn [SEP] Mozyme [SEP] B-Release [SEP] 2016"
22,29,B-Release [SEP] 2016,B-Citation [SEP] [ 47 ],176,"In this evaluation , we considered values of the final heat of formation ( HOF ) under standard conditions using the Mopac 2016 program and its implemented module Mozyme [ 47 ] .","In this evaluation , we considered values of the final heat of formation ( HOF ) under standard conditions using the Mopac 2016 program and its implemented module Mozyme [ 47 ] . [SEP] B-Release [SEP] 2016 [SEP] B-Citation [SEP] [ 47 ]","In this evaluation , we considered values of the final heat of formation ( HOF ) under standard conditions using the Mopac 2016 program and its implemented module Mozyme [ 47 ] . [SEP] B-Citation [SEP] [ 47 ] [SEP] B-Release [SEP] 2016"
28,21,B-PlugIn [SEP] Mozyme,B-Application [SEP] Mopac,176,"In this evaluation , we considered values of the final heat of formation ( HOF ) under standard conditions using the Mopac 2016 program and its implemented module Mozyme [ 47 ] .","In this evaluation , we considered values of the final heat of formation ( HOF ) under standard conditions using the Mopac 2016 program and its implemented module Mozyme [ 47 ] . [SEP] B-PlugIn [SEP] Mozyme [SEP] B-Application [SEP] Mopac","In this evaluation , we considered values of the final heat of formation ( HOF ) under standard conditions using the Mopac 2016 program and its implemented module Mozyme [ 47 ] . [SEP] B-Application [SEP] Mopac [SEP] B-PlugIn [SEP] Mozyme"
28,22,B-PlugIn [SEP] Mozyme,B-Release [SEP] 2016,176,"In this evaluation , we considered values of the final heat of formation ( HOF ) under standard conditions using the Mopac 2016 program and its implemented module Mozyme [ 47 ] .","In this evaluation , we considered values of the final heat of formation ( HOF ) under standard conditions using the Mopac 2016 program and its implemented module Mozyme [ 47 ] . [SEP] B-PlugIn [SEP] Mozyme [SEP] B-Release [SEP] 2016","In this evaluation , we considered values of the final heat of formation ( HOF ) under standard conditions using the Mopac 2016 program and its implemented module Mozyme [ 47 ] . [SEP] B-Release [SEP] 2016 [SEP] B-PlugIn [SEP] Mozyme"
28,29,B-PlugIn [SEP] Mozyme,B-Citation [SEP] [ 47 ],176,"In this evaluation , we considered values of the final heat of formation ( HOF ) under standard conditions using the Mopac 2016 program and its implemented module Mozyme [ 47 ] .","In this evaluation , we considered values of the final heat of formation ( HOF ) under standard conditions using the Mopac 2016 program and its implemented module Mozyme [ 47 ] . [SEP] B-PlugIn [SEP] Mozyme [SEP] B-Citation [SEP] [ 47 ]","In this evaluation , we considered values of the final heat of formation ( HOF ) under standard conditions using the Mopac 2016 program and its implemented module Mozyme [ 47 ] . [SEP] B-Citation [SEP] [ 47 ] [SEP] B-PlugIn [SEP] Mozyme"
29,21,B-Citation [SEP] [ 47 ],B-Application [SEP] Mopac,176,"In this evaluation , we considered values of the final heat of formation ( HOF ) under standard conditions using the Mopac 2016 program and its implemented module Mozyme [ 47 ] .","In this evaluation , we considered values of the final heat of formation ( HOF ) under standard conditions using the Mopac 2016 program and its implemented module Mozyme [ 47 ] . [SEP] B-Citation [SEP] [ 47 ] [SEP] B-Application [SEP] Mopac","In this evaluation , we considered values of the final heat of formation ( HOF ) under standard conditions using the Mopac 2016 program and its implemented module Mozyme [ 47 ] . [SEP] B-Application [SEP] Mopac [SEP] B-Citation [SEP] [ 47 ]"
29,22,B-Citation [SEP] [ 47 ],B-Release [SEP] 2016,176,"In this evaluation , we considered values of the final heat of formation ( HOF ) under standard conditions using the Mopac 2016 program and its implemented module Mozyme [ 47 ] .","In this evaluation , we considered values of the final heat of formation ( HOF ) under standard conditions using the Mopac 2016 program and its implemented module Mozyme [ 47 ] . [SEP] B-Citation [SEP] [ 47 ] [SEP] B-Release [SEP] 2016","In this evaluation , we considered values of the final heat of formation ( HOF ) under standard conditions using the Mopac 2016 program and its implemented module Mozyme [ 47 ] . [SEP] B-Release [SEP] 2016 [SEP] B-Citation [SEP] [ 47 ]"
29,28,B-Citation [SEP] [ 47 ],B-PlugIn [SEP] Mozyme,176,"In this evaluation , we considered values of the final heat of formation ( HOF ) under standard conditions using the Mopac 2016 program and its implemented module Mozyme [ 47 ] .","In this evaluation , we considered values of the final heat of formation ( HOF ) under standard conditions using the Mopac 2016 program and its implemented module Mozyme [ 47 ] . [SEP] B-Citation [SEP] [ 47 ] [SEP] B-PlugIn [SEP] Mozyme","In this evaluation , we considered values of the final heat of formation ( HOF ) under standard conditions using the Mopac 2016 program and its implemented module Mozyme [ 47 ] . [SEP] B-PlugIn [SEP] Mozyme [SEP] B-Citation [SEP] [ 47 ]"
5,8,B-Application [SEP] Desmond,B-Developer [SEP] Schrodinger Suite,177,"For this purpose , the Desmond software from Schrodinger Suite [ 49 ] was employed to simulate the solvated complexes .","For this purpose , the Desmond software from Schrodinger Suite [ 49 ] was employed to simulate the solvated complexes . [SEP] B-Application [SEP] Desmond [SEP] B-Developer [SEP] Schrodinger Suite","For this purpose , the Desmond software from Schrodinger Suite [ 49 ] was employed to simulate the solvated complexes . [SEP] B-Developer [SEP] Schrodinger Suite [SEP] B-Application [SEP] Desmond"
5,10,B-Application [SEP] Desmond,B-Citation [SEP] [ 49 ],177,"For this purpose , the Desmond software from Schrodinger Suite [ 49 ] was employed to simulate the solvated complexes .","For this purpose , the Desmond software from Schrodinger Suite [ 49 ] was employed to simulate the solvated complexes . [SEP] B-Application [SEP] Desmond [SEP] B-Citation [SEP] [ 49 ]","For this purpose , the Desmond software from Schrodinger Suite [ 49 ] was employed to simulate the solvated complexes . [SEP] B-Citation [SEP] [ 49 ] [SEP] B-Application [SEP] Desmond"
8,5,B-Developer [SEP] Schrodinger Suite,B-Application [SEP] Desmond,177,"For this purpose , the Desmond software from Schrodinger Suite [ 49 ] was employed to simulate the solvated complexes .","For this purpose , the Desmond software from Schrodinger Suite [ 49 ] was employed to simulate the solvated complexes . [SEP] B-Developer [SEP] Schrodinger Suite [SEP] B-Application [SEP] Desmond","For this purpose , the Desmond software from Schrodinger Suite [ 49 ] was employed to simulate the solvated complexes . [SEP] B-Application [SEP] Desmond [SEP] B-Developer [SEP] Schrodinger Suite"
8,10,B-Developer [SEP] Schrodinger Suite,B-Citation [SEP] [ 49 ],177,"For this purpose , the Desmond software from Schrodinger Suite [ 49 ] was employed to simulate the solvated complexes .","For this purpose , the Desmond software from Schrodinger Suite [ 49 ] was employed to simulate the solvated complexes . [SEP] B-Developer [SEP] Schrodinger Suite [SEP] B-Citation [SEP] [ 49 ]","For this purpose , the Desmond software from Schrodinger Suite [ 49 ] was employed to simulate the solvated complexes . [SEP] B-Citation [SEP] [ 49 ] [SEP] B-Developer [SEP] Schrodinger Suite"
10,5,B-Citation [SEP] [ 49 ],B-Application [SEP] Desmond,177,"For this purpose , the Desmond software from Schrodinger Suite [ 49 ] was employed to simulate the solvated complexes .","For this purpose , the Desmond software from Schrodinger Suite [ 49 ] was employed to simulate the solvated complexes . [SEP] B-Citation [SEP] [ 49 ] [SEP] B-Application [SEP] Desmond","For this purpose , the Desmond software from Schrodinger Suite [ 49 ] was employed to simulate the solvated complexes . [SEP] B-Application [SEP] Desmond [SEP] B-Citation [SEP] [ 49 ]"
10,8,B-Citation [SEP] [ 49 ],B-Developer [SEP] Schrodinger Suite,177,"For this purpose , the Desmond software from Schrodinger Suite [ 49 ] was employed to simulate the solvated complexes .","For this purpose , the Desmond software from Schrodinger Suite [ 49 ] was employed to simulate the solvated complexes . [SEP] B-Citation [SEP] [ 49 ] [SEP] B-Developer [SEP] Schrodinger Suite","For this purpose , the Desmond software from Schrodinger Suite [ 49 ] was employed to simulate the solvated complexes . [SEP] B-Developer [SEP] Schrodinger Suite [SEP] B-Citation [SEP] [ 49 ]"
9,10,B-Application [SEP] PM,B-Version [SEP] 7,178,"Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase .","Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase . [SEP] B-Application [SEP] PM [SEP] B-Version [SEP] 7","Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase . [SEP] B-Version [SEP] 7 [SEP] B-Application [SEP] PM"
9,12,B-Application [SEP] PM,B-Developer [SEP] Mopac,178,"Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase .","Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase . [SEP] B-Application [SEP] PM [SEP] B-Developer [SEP] Mopac","Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase . [SEP] B-Developer [SEP] Mopac [SEP] B-Application [SEP] PM"
9,13,B-Application [SEP] PM,B-Release [SEP] 2016,178,"Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase .","Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase . [SEP] B-Application [SEP] PM [SEP] B-Release [SEP] 2016","Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase . [SEP] B-Release [SEP] 2016 [SEP] B-Application [SEP] PM"
9,15,B-Application [SEP] PM,"B-Citation [SEP] [ 47 , 51 ]",178,"Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase .","Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase . [SEP] B-Application [SEP] PM [SEP] B-Citation [SEP] [ 47 , 51 ]","Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase . [SEP] B-Citation [SEP] [ 47 , 51 ] [SEP] B-Application [SEP] PM"
10,9,B-Version [SEP] 7,B-Application [SEP] PM,178,"Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase .","Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase . [SEP] B-Version [SEP] 7 [SEP] B-Application [SEP] PM","Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase . [SEP] B-Application [SEP] PM [SEP] B-Version [SEP] 7"
10,12,B-Version [SEP] 7,B-Developer [SEP] Mopac,178,"Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase .","Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase . [SEP] B-Version [SEP] 7 [SEP] B-Developer [SEP] Mopac","Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase . [SEP] B-Developer [SEP] Mopac [SEP] B-Version [SEP] 7"
10,13,B-Version [SEP] 7,B-Release [SEP] 2016,178,"Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase .","Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase . [SEP] B-Version [SEP] 7 [SEP] B-Release [SEP] 2016","Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase . [SEP] B-Release [SEP] 2016 [SEP] B-Version [SEP] 7"
10,15,B-Version [SEP] 7,"B-Citation [SEP] [ 47 , 51 ]",178,"Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase .","Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase . [SEP] B-Version [SEP] 7 [SEP] B-Citation [SEP] [ 47 , 51 ]","Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase . [SEP] B-Citation [SEP] [ 47 , 51 ] [SEP] B-Version [SEP] 7"
12,9,B-Developer [SEP] Mopac,B-Application [SEP] PM,178,"Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase .","Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase . [SEP] B-Developer [SEP] Mopac [SEP] B-Application [SEP] PM","Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase . [SEP] B-Application [SEP] PM [SEP] B-Developer [SEP] Mopac"
12,10,B-Developer [SEP] Mopac,B-Version [SEP] 7,178,"Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase .","Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase . [SEP] B-Developer [SEP] Mopac [SEP] B-Version [SEP] 7","Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase . [SEP] B-Version [SEP] 7 [SEP] B-Developer [SEP] Mopac"
12,13,B-Developer [SEP] Mopac,B-Release [SEP] 2016,178,"Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase .","Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase . [SEP] B-Developer [SEP] Mopac [SEP] B-Release [SEP] 2016","Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase . [SEP] B-Release [SEP] 2016 [SEP] B-Developer [SEP] Mopac"
12,15,B-Developer [SEP] Mopac,"B-Citation [SEP] [ 47 , 51 ]",178,"Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase .","Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase . [SEP] B-Developer [SEP] Mopac [SEP] B-Citation [SEP] [ 47 , 51 ]","Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase . [SEP] B-Citation [SEP] [ 47 , 51 ] [SEP] B-Developer [SEP] Mopac"
13,9,B-Release [SEP] 2016,B-Application [SEP] PM,178,"Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase .","Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase . [SEP] B-Release [SEP] 2016 [SEP] B-Application [SEP] PM","Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase . [SEP] B-Application [SEP] PM [SEP] B-Release [SEP] 2016"
13,10,B-Release [SEP] 2016,B-Version [SEP] 7,178,"Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase .","Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase . [SEP] B-Release [SEP] 2016 [SEP] B-Version [SEP] 7","Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase . [SEP] B-Version [SEP] 7 [SEP] B-Release [SEP] 2016"
13,12,B-Release [SEP] 2016,B-Developer [SEP] Mopac,178,"Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase .","Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase . [SEP] B-Release [SEP] 2016 [SEP] B-Developer [SEP] Mopac","Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase . [SEP] B-Developer [SEP] Mopac [SEP] B-Release [SEP] 2016"
13,15,B-Release [SEP] 2016,"B-Citation [SEP] [ 47 , 51 ]",178,"Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase .","Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase . [SEP] B-Release [SEP] 2016 [SEP] B-Citation [SEP] [ 47 , 51 ]","Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase . [SEP] B-Citation [SEP] [ 47 , 51 ] [SEP] B-Release [SEP] 2016"
15,9,"B-Citation [SEP] [ 47 , 51 ]",B-Application [SEP] PM,178,"Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase .","Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase . [SEP] B-Citation [SEP] [ 47 , 51 ] [SEP] B-Application [SEP] PM","Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase . [SEP] B-Application [SEP] PM [SEP] B-Citation [SEP] [ 47 , 51 ]"
15,10,"B-Citation [SEP] [ 47 , 51 ]",B-Version [SEP] 7,178,"Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase .","Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase . [SEP] B-Citation [SEP] [ 47 , 51 ] [SEP] B-Version [SEP] 7","Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase . [SEP] B-Version [SEP] 7 [SEP] B-Citation [SEP] [ 47 , 51 ]"
15,12,"B-Citation [SEP] [ 47 , 51 ]",B-Developer [SEP] Mopac,178,"Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase .","Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase . [SEP] B-Citation [SEP] [ 47 , 51 ] [SEP] B-Developer [SEP] Mopac","Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase . [SEP] B-Developer [SEP] Mopac [SEP] B-Citation [SEP] [ 47 , 51 ]"
15,13,"B-Citation [SEP] [ 47 , 51 ]",B-Release [SEP] 2016,178,"Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase .","Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase . [SEP] B-Citation [SEP] [ 47 , 51 ] [SEP] B-Release [SEP] 2016","Next , all the resulting conformations were optimized with PM 7 ( Mopac 2016 ) [ 47 , 51 ] , then each from the four most energetically stable conformers of hetarenes 1 - 9 , i . e . , with the lowest HOF , was optimized using density functional theory formalism [ 52 ] in the gaseous phase . [SEP] B-Release [SEP] 2016 [SEP] B-Citation [SEP] [ 47 , 51 ]"
37,31,B-Citation [SEP] [ 25 ],B-PlugIn [SEP] Gaussian 16 C .,179,"On this account , DFT calculations were executed , and geometries of each previously pre - optimized conformers of 1 - 9 ( Scheme 1 ) were further optimized using the Gaussian 16 C . 01 program [ 25 ] at the B3LYP / 6 - 31G ( d , p ) level of theory ( very tight criteria ) [ 53 ] .","On this account , DFT calculations were executed , and geometries of each previously pre - optimized conformers of 1 - 9 ( Scheme 1 ) were further optimized using the Gaussian 16 C . 01 program [ 25 ] at the B3LYP / 6 - 31G ( d , p ) level of theory ( very tight criteria ) [ 53 ] . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-PlugIn [SEP] Gaussian 16 C .","On this account , DFT calculations were executed , and geometries of each previously pre - optimized conformers of 1 - 9 ( Scheme 1 ) were further optimized using the Gaussian 16 C . 01 program [ 25 ] at the B3LYP / 6 - 31G ( d , p ) level of theory ( very tight criteria ) [ 53 ] . [SEP] B-PlugIn [SEP] Gaussian 16 C . [SEP] B-Citation [SEP] [ 25 ]"
37,35,B-Citation [SEP] [ 25 ],B-Version [SEP] 01,179,"On this account , DFT calculations were executed , and geometries of each previously pre - optimized conformers of 1 - 9 ( Scheme 1 ) were further optimized using the Gaussian 16 C . 01 program [ 25 ] at the B3LYP / 6 - 31G ( d , p ) level of theory ( very tight criteria ) [ 53 ] .","On this account , DFT calculations were executed , and geometries of each previously pre - optimized conformers of 1 - 9 ( Scheme 1 ) were further optimized using the Gaussian 16 C . 01 program [ 25 ] at the B3LYP / 6 - 31G ( d , p ) level of theory ( very tight criteria ) [ 53 ] . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Version [SEP] 01","On this account , DFT calculations were executed , and geometries of each previously pre - optimized conformers of 1 - 9 ( Scheme 1 ) were further optimized using the Gaussian 16 C . 01 program [ 25 ] at the B3LYP / 6 - 31G ( d , p ) level of theory ( very tight criteria ) [ 53 ] . [SEP] B-Version [SEP] 01 [SEP] B-Citation [SEP] [ 25 ]"
31,37,B-PlugIn [SEP] Gaussian 16 C .,B-Citation [SEP] [ 25 ],179,"On this account , DFT calculations were executed , and geometries of each previously pre - optimized conformers of 1 - 9 ( Scheme 1 ) were further optimized using the Gaussian 16 C . 01 program [ 25 ] at the B3LYP / 6 - 31G ( d , p ) level of theory ( very tight criteria ) [ 53 ] .","On this account , DFT calculations were executed , and geometries of each previously pre - optimized conformers of 1 - 9 ( Scheme 1 ) were further optimized using the Gaussian 16 C . 01 program [ 25 ] at the B3LYP / 6 - 31G ( d , p ) level of theory ( very tight criteria ) [ 53 ] . [SEP] B-PlugIn [SEP] Gaussian 16 C . [SEP] B-Citation [SEP] [ 25 ]","On this account , DFT calculations were executed , and geometries of each previously pre - optimized conformers of 1 - 9 ( Scheme 1 ) were further optimized using the Gaussian 16 C . 01 program [ 25 ] at the B3LYP / 6 - 31G ( d , p ) level of theory ( very tight criteria ) [ 53 ] . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-PlugIn [SEP] Gaussian 16 C ."
31,35,B-PlugIn [SEP] Gaussian 16 C .,B-Version [SEP] 01,179,"On this account , DFT calculations were executed , and geometries of each previously pre - optimized conformers of 1 - 9 ( Scheme 1 ) were further optimized using the Gaussian 16 C . 01 program [ 25 ] at the B3LYP / 6 - 31G ( d , p ) level of theory ( very tight criteria ) [ 53 ] .","On this account , DFT calculations were executed , and geometries of each previously pre - optimized conformers of 1 - 9 ( Scheme 1 ) were further optimized using the Gaussian 16 C . 01 program [ 25 ] at the B3LYP / 6 - 31G ( d , p ) level of theory ( very tight criteria ) [ 53 ] . [SEP] B-PlugIn [SEP] Gaussian 16 C . [SEP] B-Version [SEP] 01","On this account , DFT calculations were executed , and geometries of each previously pre - optimized conformers of 1 - 9 ( Scheme 1 ) were further optimized using the Gaussian 16 C . 01 program [ 25 ] at the B3LYP / 6 - 31G ( d , p ) level of theory ( very tight criteria ) [ 53 ] . [SEP] B-Version [SEP] 01 [SEP] B-PlugIn [SEP] Gaussian 16 C ."
35,37,B-Version [SEP] 01,B-Citation [SEP] [ 25 ],179,"On this account , DFT calculations were executed , and geometries of each previously pre - optimized conformers of 1 - 9 ( Scheme 1 ) were further optimized using the Gaussian 16 C . 01 program [ 25 ] at the B3LYP / 6 - 31G ( d , p ) level of theory ( very tight criteria ) [ 53 ] .","On this account , DFT calculations were executed , and geometries of each previously pre - optimized conformers of 1 - 9 ( Scheme 1 ) were further optimized using the Gaussian 16 C . 01 program [ 25 ] at the B3LYP / 6 - 31G ( d , p ) level of theory ( very tight criteria ) [ 53 ] . [SEP] B-Version [SEP] 01 [SEP] B-Citation [SEP] [ 25 ]","On this account , DFT calculations were executed , and geometries of each previously pre - optimized conformers of 1 - 9 ( Scheme 1 ) were further optimized using the Gaussian 16 C . 01 program [ 25 ] at the B3LYP / 6 - 31G ( d , p ) level of theory ( very tight criteria ) [ 53 ] . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Version [SEP] 01"
35,31,B-Version [SEP] 01,B-PlugIn [SEP] Gaussian 16 C .,179,"On this account , DFT calculations were executed , and geometries of each previously pre - optimized conformers of 1 - 9 ( Scheme 1 ) were further optimized using the Gaussian 16 C . 01 program [ 25 ] at the B3LYP / 6 - 31G ( d , p ) level of theory ( very tight criteria ) [ 53 ] .","On this account , DFT calculations were executed , and geometries of each previously pre - optimized conformers of 1 - 9 ( Scheme 1 ) were further optimized using the Gaussian 16 C . 01 program [ 25 ] at the B3LYP / 6 - 31G ( d , p ) level of theory ( very tight criteria ) [ 53 ] . [SEP] B-Version [SEP] 01 [SEP] B-PlugIn [SEP] Gaussian 16 C .","On this account , DFT calculations were executed , and geometries of each previously pre - optimized conformers of 1 - 9 ( Scheme 1 ) were further optimized using the Gaussian 16 C . 01 program [ 25 ] at the B3LYP / 6 - 31G ( d , p ) level of theory ( very tight criteria ) [ 53 ] . [SEP] B-PlugIn [SEP] Gaussian 16 C . [SEP] B-Version [SEP] 01"
60,66,B-Application [SEP] Gaussian 16 C . 01,B-Citation [SEP] [ 25 ],180,"The molecular electrostatic potential ( MEP ) was determined by the B3LYP / 6 - 311 + + G ( 2d , 3p ) approach for the conformers of azoles 1 - 9 ( 1st poses ) with geometry previously optimized at B3LYP / 6 - 31G ( d , p ) level of theory in the gaseous phase ( Gaussian 16 C . 01 program [ 25 ] , key - word , pop = esp ” ) .","The molecular electrostatic potential ( MEP ) was determined by the B3LYP / 6 - 311 + + G ( 2d , 3p ) approach for the conformers of azoles 1 - 9 ( 1st poses ) with geometry previously optimized at B3LYP / 6 - 31G ( d , p ) level of theory in the gaseous phase ( Gaussian 16 C . 01 program [ 25 ] , key - word , pop = esp ” ) . [SEP] B-Application [SEP] Gaussian 16 C . 01 [SEP] B-Citation [SEP] [ 25 ]","The molecular electrostatic potential ( MEP ) was determined by the B3LYP / 6 - 311 + + G ( 2d , 3p ) approach for the conformers of azoles 1 - 9 ( 1st poses ) with geometry previously optimized at B3LYP / 6 - 31G ( d , p ) level of theory in the gaseous phase ( Gaussian 16 C . 01 program [ 25 ] , key - word , pop = esp ” ) . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Application [SEP] Gaussian 16 C . 01"
66,60,B-Citation [SEP] [ 25 ],B-Application [SEP] Gaussian 16 C . 01,180,"The molecular electrostatic potential ( MEP ) was determined by the B3LYP / 6 - 311 + + G ( 2d , 3p ) approach for the conformers of azoles 1 - 9 ( 1st poses ) with geometry previously optimized at B3LYP / 6 - 31G ( d , p ) level of theory in the gaseous phase ( Gaussian 16 C . 01 program [ 25 ] , key - word , pop = esp ” ) .","The molecular electrostatic potential ( MEP ) was determined by the B3LYP / 6 - 311 + + G ( 2d , 3p ) approach for the conformers of azoles 1 - 9 ( 1st poses ) with geometry previously optimized at B3LYP / 6 - 31G ( d , p ) level of theory in the gaseous phase ( Gaussian 16 C . 01 program [ 25 ] , key - word , pop = esp ” ) . [SEP] B-Citation [SEP] [ 25 ] [SEP] B-Application [SEP] Gaussian 16 C . 01","The molecular electrostatic potential ( MEP ) was determined by the B3LYP / 6 - 311 + + G ( 2d , 3p ) approach for the conformers of azoles 1 - 9 ( 1st poses ) with geometry previously optimized at B3LYP / 6 - 31G ( d , p ) level of theory in the gaseous phase ( Gaussian 16 C . 01 program [ 25 ] , key - word , pop = esp ” ) . [SEP] B-Application [SEP] Gaussian 16 C . 01 [SEP] B-Citation [SEP] [ 25 ]"
11,13,B-Application [SEP] AutoDock Vina,B-Citation [SEP] [ 26 ],181,The genetic algorithm ( GA ) method implemented in the program AutoDock Vina [ 26 ] was employed to locate the appropriate binding orientations and conformations of the compounds into the VEGFR 2 binding pocket .,The genetic algorithm ( GA ) method implemented in the program AutoDock Vina [ 26 ] was employed to locate the appropriate binding orientations and conformations of the compounds into the VEGFR 2 binding pocket . [SEP] B-Application [SEP] AutoDock Vina [SEP] B-Citation [SEP] [ 26 ],The genetic algorithm ( GA ) method implemented in the program AutoDock Vina [ 26 ] was employed to locate the appropriate binding orientations and conformations of the compounds into the VEGFR 2 binding pocket . [SEP] B-Citation [SEP] [ 26 ] [SEP] B-Application [SEP] AutoDock Vina
13,11,B-Citation [SEP] [ 26 ],B-Application [SEP] AutoDock Vina,181,The genetic algorithm ( GA ) method implemented in the program AutoDock Vina [ 26 ] was employed to locate the appropriate binding orientations and conformations of the compounds into the VEGFR 2 binding pocket .,The genetic algorithm ( GA ) method implemented in the program AutoDock Vina [ 26 ] was employed to locate the appropriate binding orientations and conformations of the compounds into the VEGFR 2 binding pocket . [SEP] B-Citation [SEP] [ 26 ] [SEP] B-Application [SEP] AutoDock Vina,The genetic algorithm ( GA ) method implemented in the program AutoDock Vina [ 26 ] was employed to locate the appropriate binding orientations and conformations of the compounds into the VEGFR 2 binding pocket . [SEP] B-Application [SEP] AutoDock Vina [SEP] B-Citation [SEP] [ 26 ]
15,16,B-Application [SEP] Chimera,B-Version [SEP] 1 . 13 . 1,182,The outputs ( * . pdbqt files ) after docking procedure were visualized using the Chimera 1 . 13 . 1 package [ 54 ] .,The outputs ( * . pdbqt files ) after docking procedure were visualized using the Chimera 1 . 13 . 1 package [ 54 ] . [SEP] B-Application [SEP] Chimera [SEP] B-Version [SEP] 1 . 13 . 1,The outputs ( * . pdbqt files ) after docking procedure were visualized using the Chimera 1 . 13 . 1 package [ 54 ] . [SEP] B-Version [SEP] 1 . 13 . 1 [SEP] B-Application [SEP] Chimera
15,22,B-Application [SEP] Chimera,B-Citation [SEP] [ 54 ],182,The outputs ( * . pdbqt files ) after docking procedure were visualized using the Chimera 1 . 13 . 1 package [ 54 ] .,The outputs ( * . pdbqt files ) after docking procedure were visualized using the Chimera 1 . 13 . 1 package [ 54 ] . [SEP] B-Application [SEP] Chimera [SEP] B-Citation [SEP] [ 54 ],The outputs ( * . pdbqt files ) after docking procedure were visualized using the Chimera 1 . 13 . 1 package [ 54 ] . [SEP] B-Citation [SEP] [ 54 ] [SEP] B-Application [SEP] Chimera
16,15,B-Version [SEP] 1 . 13 . 1,B-Application [SEP] Chimera,182,The outputs ( * . pdbqt files ) after docking procedure were visualized using the Chimera 1 . 13 . 1 package [ 54 ] .,The outputs ( * . pdbqt files ) after docking procedure were visualized using the Chimera 1 . 13 . 1 package [ 54 ] . [SEP] B-Version [SEP] 1 . 13 . 1 [SEP] B-Application [SEP] Chimera,The outputs ( * . pdbqt files ) after docking procedure were visualized using the Chimera 1 . 13 . 1 package [ 54 ] . [SEP] B-Application [SEP] Chimera [SEP] B-Version [SEP] 1 . 13 . 1
16,22,B-Version [SEP] 1 . 13 . 1,B-Citation [SEP] [ 54 ],182,The outputs ( * . pdbqt files ) after docking procedure were visualized using the Chimera 1 . 13 . 1 package [ 54 ] .,The outputs ( * . pdbqt files ) after docking procedure were visualized using the Chimera 1 . 13 . 1 package [ 54 ] . [SEP] B-Version [SEP] 1 . 13 . 1 [SEP] B-Citation [SEP] [ 54 ],The outputs ( * . pdbqt files ) after docking procedure were visualized using the Chimera 1 . 13 . 1 package [ 54 ] . [SEP] B-Citation [SEP] [ 54 ] [SEP] B-Version [SEP] 1 . 13 . 1
22,15,B-Citation [SEP] [ 54 ],B-Application [SEP] Chimera,182,The outputs ( * . pdbqt files ) after docking procedure were visualized using the Chimera 1 . 13 . 1 package [ 54 ] .,The outputs ( * . pdbqt files ) after docking procedure were visualized using the Chimera 1 . 13 . 1 package [ 54 ] . [SEP] B-Citation [SEP] [ 54 ] [SEP] B-Application [SEP] Chimera,The outputs ( * . pdbqt files ) after docking procedure were visualized using the Chimera 1 . 13 . 1 package [ 54 ] . [SEP] B-Application [SEP] Chimera [SEP] B-Citation [SEP] [ 54 ]
22,16,B-Citation [SEP] [ 54 ],B-Version [SEP] 1 . 13 . 1,182,The outputs ( * . pdbqt files ) after docking procedure were visualized using the Chimera 1 . 13 . 1 package [ 54 ] .,The outputs ( * . pdbqt files ) after docking procedure were visualized using the Chimera 1 . 13 . 1 package [ 54 ] . [SEP] B-Citation [SEP] [ 54 ] [SEP] B-Version [SEP] 1 . 13 . 1,The outputs ( * . pdbqt files ) after docking procedure were visualized using the Chimera 1 . 13 . 1 package [ 54 ] . [SEP] B-Version [SEP] 1 . 13 . 1 [SEP] B-Citation [SEP] [ 54 ]
18,22,B-Application [SEP] with LigPlot,B-Version [SEP] . 2 .,183,"The projections of the 1st poses of azoles 1 - 9 docked to the kinase pocket were visualised with LigPlot + v . 2 . 2 software [ 55 , 56 ] ( Figure 2a - c ) .","The projections of the 1st poses of azoles 1 - 9 docked to the kinase pocket were visualised with LigPlot + v . 2 . 2 software [ 55 , 56 ] ( Figure 2a - c ) . [SEP] B-Application [SEP] with LigPlot [SEP] B-Version [SEP] . 2 .","The projections of the 1st poses of azoles 1 - 9 docked to the kinase pocket were visualised with LigPlot + v . 2 . 2 software [ 55 , 56 ] ( Figure 2a - c ) . [SEP] B-Version [SEP] . 2 . [SEP] B-Application [SEP] with LigPlot"
18,26,B-Application [SEP] with LigPlot,"B-Citation [SEP] software [ 55 , 56",183,"The projections of the 1st poses of azoles 1 - 9 docked to the kinase pocket were visualised with LigPlot + v . 2 . 2 software [ 55 , 56 ] ( Figure 2a - c ) .","The projections of the 1st poses of azoles 1 - 9 docked to the kinase pocket were visualised with LigPlot + v . 2 . 2 software [ 55 , 56 ] ( Figure 2a - c ) . [SEP] B-Application [SEP] with LigPlot [SEP] B-Citation [SEP] software [ 55 , 56","The projections of the 1st poses of azoles 1 - 9 docked to the kinase pocket were visualised with LigPlot + v . 2 . 2 software [ 55 , 56 ] ( Figure 2a - c ) . [SEP] B-Citation [SEP] software [ 55 , 56 [SEP] B-Application [SEP] with LigPlot"
22,18,B-Version [SEP] . 2 .,B-Application [SEP] with LigPlot,183,"The projections of the 1st poses of azoles 1 - 9 docked to the kinase pocket were visualised with LigPlot + v . 2 . 2 software [ 55 , 56 ] ( Figure 2a - c ) .","The projections of the 1st poses of azoles 1 - 9 docked to the kinase pocket were visualised with LigPlot + v . 2 . 2 software [ 55 , 56 ] ( Figure 2a - c ) . [SEP] B-Version [SEP] . 2 . [SEP] B-Application [SEP] with LigPlot","The projections of the 1st poses of azoles 1 - 9 docked to the kinase pocket were visualised with LigPlot + v . 2 . 2 software [ 55 , 56 ] ( Figure 2a - c ) . [SEP] B-Application [SEP] with LigPlot [SEP] B-Version [SEP] . 2 ."
22,26,B-Version [SEP] . 2 .,"B-Citation [SEP] software [ 55 , 56",183,"The projections of the 1st poses of azoles 1 - 9 docked to the kinase pocket were visualised with LigPlot + v . 2 . 2 software [ 55 , 56 ] ( Figure 2a - c ) .","The projections of the 1st poses of azoles 1 - 9 docked to the kinase pocket were visualised with LigPlot + v . 2 . 2 software [ 55 , 56 ] ( Figure 2a - c ) . [SEP] B-Version [SEP] . 2 . [SEP] B-Citation [SEP] software [ 55 , 56","The projections of the 1st poses of azoles 1 - 9 docked to the kinase pocket were visualised with LigPlot + v . 2 . 2 software [ 55 , 56 ] ( Figure 2a - c ) . [SEP] B-Citation [SEP] software [ 55 , 56 [SEP] B-Version [SEP] . 2 ."
26,18,"B-Citation [SEP] software [ 55 , 56",B-Application [SEP] with LigPlot,183,"The projections of the 1st poses of azoles 1 - 9 docked to the kinase pocket were visualised with LigPlot + v . 2 . 2 software [ 55 , 56 ] ( Figure 2a - c ) .","The projections of the 1st poses of azoles 1 - 9 docked to the kinase pocket were visualised with LigPlot + v . 2 . 2 software [ 55 , 56 ] ( Figure 2a - c ) . [SEP] B-Citation [SEP] software [ 55 , 56 [SEP] B-Application [SEP] with LigPlot","The projections of the 1st poses of azoles 1 - 9 docked to the kinase pocket were visualised with LigPlot + v . 2 . 2 software [ 55 , 56 ] ( Figure 2a - c ) . [SEP] B-Application [SEP] with LigPlot [SEP] B-Citation [SEP] software [ 55 , 56"
26,22,"B-Citation [SEP] software [ 55 , 56",B-Version [SEP] . 2 .,183,"The projections of the 1st poses of azoles 1 - 9 docked to the kinase pocket were visualised with LigPlot + v . 2 . 2 software [ 55 , 56 ] ( Figure 2a - c ) .","The projections of the 1st poses of azoles 1 - 9 docked to the kinase pocket were visualised with LigPlot + v . 2 . 2 software [ 55 , 56 ] ( Figure 2a - c ) . [SEP] B-Citation [SEP] software [ 55 , 56 [SEP] B-Version [SEP] . 2 .","The projections of the 1st poses of azoles 1 - 9 docked to the kinase pocket were visualised with LigPlot + v . 2 . 2 software [ 55 , 56 ] ( Figure 2a - c ) . [SEP] B-Version [SEP] . 2 . [SEP] B-Citation [SEP] software [ 55 , 56"
29,23,B-Citation [SEP] [ 50 ],B-Citation [SEP] [ 47 ],184,"For semi - empirical calculations with the use of the PM 7 method [ 48 ] , we used the Mopac 2016 software [ 47 ] and Mozyme method [ 50 ] .","For semi - empirical calculations with the use of the PM 7 method [ 48 ] , we used the Mopac 2016 software [ 47 ] and Mozyme method [ 50 ] . [SEP] B-Citation [SEP] [ 50 ] [SEP] B-Citation [SEP] [ 47 ]","For semi - empirical calculations with the use of the PM 7 method [ 48 ] , we used the Mopac 2016 software [ 47 ] and Mozyme method [ 50 ] . [SEP] B-Citation [SEP] [ 47 ] [SEP] B-Citation [SEP] [ 50 ]"
29,21,B-Citation [SEP] [ 50 ],B-Release [SEP] 2016,184,"For semi - empirical calculations with the use of the PM 7 method [ 48 ] , we used the Mopac 2016 software [ 47 ] and Mozyme method [ 50 ] .","For semi - empirical calculations with the use of the PM 7 method [ 48 ] , we used the Mopac 2016 software [ 47 ] and Mozyme method [ 50 ] . [SEP] B-Citation [SEP] [ 50 ] [SEP] B-Release [SEP] 2016","For semi - empirical calculations with the use of the PM 7 method [ 48 ] , we used the Mopac 2016 software [ 47 ] and Mozyme method [ 50 ] . [SEP] B-Release [SEP] 2016 [SEP] B-Citation [SEP] [ 50 ]"
29,20,B-Citation [SEP] [ 50 ],B-Application [SEP] Mopac,184,"For semi - empirical calculations with the use of the PM 7 method [ 48 ] , we used the Mopac 2016 software [ 47 ] and Mozyme method [ 50 ] .","For semi - empirical calculations with the use of the PM 7 method [ 48 ] , we used the Mopac 2016 software [ 47 ] and Mozyme method [ 50 ] . [SEP] B-Citation [SEP] [ 50 ] [SEP] B-Application [SEP] Mopac","For semi - empirical calculations with the use of the PM 7 method [ 48 ] , we used the Mopac 2016 software [ 47 ] and Mozyme method [ 50 ] . [SEP] B-Application [SEP] Mopac [SEP] B-Citation [SEP] [ 50 ]"
23,29,B-Citation [SEP] [ 47 ],B-Citation [SEP] [ 50 ],184,"For semi - empirical calculations with the use of the PM 7 method [ 48 ] , we used the Mopac 2016 software [ 47 ] and Mozyme method [ 50 ] .","For semi - empirical calculations with the use of the PM 7 method [ 48 ] , we used the Mopac 2016 software [ 47 ] and Mozyme method [ 50 ] . [SEP] B-Citation [SEP] [ 47 ] [SEP] B-Citation [SEP] [ 50 ]","For semi - empirical calculations with the use of the PM 7 method [ 48 ] , we used the Mopac 2016 software [ 47 ] and Mozyme method [ 50 ] . [SEP] B-Citation [SEP] [ 50 ] [SEP] B-Citation [SEP] [ 47 ]"
23,21,B-Citation [SEP] [ 47 ],B-Release [SEP] 2016,184,"For semi - empirical calculations with the use of the PM 7 method [ 48 ] , we used the Mopac 2016 software [ 47 ] and Mozyme method [ 50 ] .","For semi - empirical calculations with the use of the PM 7 method [ 48 ] , we used the Mopac 2016 software [ 47 ] and Mozyme method [ 50 ] . [SEP] B-Citation [SEP] [ 47 ] [SEP] B-Release [SEP] 2016","For semi - empirical calculations with the use of the PM 7 method [ 48 ] , we used the Mopac 2016 software [ 47 ] and Mozyme method [ 50 ] . [SEP] B-Release [SEP] 2016 [SEP] B-Citation [SEP] [ 47 ]"
23,20,B-Citation [SEP] [ 47 ],B-Application [SEP] Mopac,184,"For semi - empirical calculations with the use of the PM 7 method [ 48 ] , we used the Mopac 2016 software [ 47 ] and Mozyme method [ 50 ] .","For semi - empirical calculations with the use of the PM 7 method [ 48 ] , we used the Mopac 2016 software [ 47 ] and Mozyme method [ 50 ] . [SEP] B-Citation [SEP] [ 47 ] [SEP] B-Application [SEP] Mopac","For semi - empirical calculations with the use of the PM 7 method [ 48 ] , we used the Mopac 2016 software [ 47 ] and Mozyme method [ 50 ] . [SEP] B-Application [SEP] Mopac [SEP] B-Citation [SEP] [ 47 ]"
21,29,B-Release [SEP] 2016,B-Citation [SEP] [ 50 ],184,"For semi - empirical calculations with the use of the PM 7 method [ 48 ] , we used the Mopac 2016 software [ 47 ] and Mozyme method [ 50 ] .","For semi - empirical calculations with the use of the PM 7 method [ 48 ] , we used the Mopac 2016 software [ 47 ] and Mozyme method [ 50 ] . [SEP] B-Release [SEP] 2016 [SEP] B-Citation [SEP] [ 50 ]","For semi - empirical calculations with the use of the PM 7 method [ 48 ] , we used the Mopac 2016 software [ 47 ] and Mozyme method [ 50 ] . [SEP] B-Citation [SEP] [ 50 ] [SEP] B-Release [SEP] 2016"
21,23,B-Release [SEP] 2016,B-Citation [SEP] [ 47 ],184,"For semi - empirical calculations with the use of the PM 7 method [ 48 ] , we used the Mopac 2016 software [ 47 ] and Mozyme method [ 50 ] .","For semi - empirical calculations with the use of the PM 7 method [ 48 ] , we used the Mopac 2016 software [ 47 ] and Mozyme method [ 50 ] . [SEP] B-Release [SEP] 2016 [SEP] B-Citation [SEP] [ 47 ]","For semi - empirical calculations with the use of the PM 7 method [ 48 ] , we used the Mopac 2016 software [ 47 ] and Mozyme method [ 50 ] . [SEP] B-Citation [SEP] [ 47 ] [SEP] B-Release [SEP] 2016"
21,20,B-Release [SEP] 2016,B-Application [SEP] Mopac,184,"For semi - empirical calculations with the use of the PM 7 method [ 48 ] , we used the Mopac 2016 software [ 47 ] and Mozyme method [ 50 ] .","For semi - empirical calculations with the use of the PM 7 method [ 48 ] , we used the Mopac 2016 software [ 47 ] and Mozyme method [ 50 ] . [SEP] B-Release [SEP] 2016 [SEP] B-Application [SEP] Mopac","For semi - empirical calculations with the use of the PM 7 method [ 48 ] , we used the Mopac 2016 software [ 47 ] and Mozyme method [ 50 ] . [SEP] B-Application [SEP] Mopac [SEP] B-Release [SEP] 2016"
20,29,B-Application [SEP] Mopac,B-Citation [SEP] [ 50 ],184,"For semi - empirical calculations with the use of the PM 7 method [ 48 ] , we used the Mopac 2016 software [ 47 ] and Mozyme method [ 50 ] .","For semi - empirical calculations with the use of the PM 7 method [ 48 ] , we used the Mopac 2016 software [ 47 ] and Mozyme method [ 50 ] . [SEP] B-Application [SEP] Mopac [SEP] B-Citation [SEP] [ 50 ]","For semi - empirical calculations with the use of the PM 7 method [ 48 ] , we used the Mopac 2016 software [ 47 ] and Mozyme method [ 50 ] . [SEP] B-Citation [SEP] [ 50 ] [SEP] B-Application [SEP] Mopac"
20,23,B-Application [SEP] Mopac,B-Citation [SEP] [ 47 ],184,"For semi - empirical calculations with the use of the PM 7 method [ 48 ] , we used the Mopac 2016 software [ 47 ] and Mozyme method [ 50 ] .","For semi - empirical calculations with the use of the PM 7 method [ 48 ] , we used the Mopac 2016 software [ 47 ] and Mozyme method [ 50 ] . [SEP] B-Application [SEP] Mopac [SEP] B-Citation [SEP] [ 47 ]","For semi - empirical calculations with the use of the PM 7 method [ 48 ] , we used the Mopac 2016 software [ 47 ] and Mozyme method [ 50 ] . [SEP] B-Citation [SEP] [ 47 ] [SEP] B-Application [SEP] Mopac"
20,21,B-Application [SEP] Mopac,B-Release [SEP] 2016,184,"For semi - empirical calculations with the use of the PM 7 method [ 48 ] , we used the Mopac 2016 software [ 47 ] and Mozyme method [ 50 ] .","For semi - empirical calculations with the use of the PM 7 method [ 48 ] , we used the Mopac 2016 software [ 47 ] and Mozyme method [ 50 ] . [SEP] B-Application [SEP] Mopac [SEP] B-Release [SEP] 2016","For semi - empirical calculations with the use of the PM 7 method [ 48 ] , we used the Mopac 2016 software [ 47 ] and Mozyme method [ 50 ] . [SEP] B-Release [SEP] 2016 [SEP] B-Application [SEP] Mopac"
17,19,B-Application [SEP] GAMESS,B-Citation [SEP] [ 46 ],185,"For this purpose , we applied the MP 2 / 6 - 31G * level using the GAMESS program [ 46 ] , as well as the polarizable continuum ( PCM ) solvation model [ 45 ] and water as a solvent .","For this purpose , we applied the MP 2 / 6 - 31G * level using the GAMESS program [ 46 ] , as well as the polarizable continuum ( PCM ) solvation model [ 45 ] and water as a solvent . [SEP] B-Application [SEP] GAMESS [SEP] B-Citation [SEP] [ 46 ]","For this purpose , we applied the MP 2 / 6 - 31G * level using the GAMESS program [ 46 ] , as well as the polarizable continuum ( PCM ) solvation model [ 45 ] and water as a solvent . [SEP] B-Citation [SEP] [ 46 ] [SEP] B-Application [SEP] GAMESS"
19,17,B-Citation [SEP] [ 46 ],B-Application [SEP] GAMESS,185,"For this purpose , we applied the MP 2 / 6 - 31G * level using the GAMESS program [ 46 ] , as well as the polarizable continuum ( PCM ) solvation model [ 45 ] and water as a solvent .","For this purpose , we applied the MP 2 / 6 - 31G * level using the GAMESS program [ 46 ] , as well as the polarizable continuum ( PCM ) solvation model [ 45 ] and water as a solvent . [SEP] B-Citation [SEP] [ 46 ] [SEP] B-Application [SEP] GAMESS","For this purpose , we applied the MP 2 / 6 - 31G * level using the GAMESS program [ 46 ] , as well as the polarizable continuum ( PCM ) solvation model [ 45 ] and water as a solvent . [SEP] B-Application [SEP] GAMESS [SEP] B-Citation [SEP] [ 46 ]"
7,9,B-Application [SEP] Desmond,B-Citation [SEP] [ 49 ],186,"For molecular dynamics MD calculations , the Desmond software [ 49 ] was employed to simulate the solvated complexes .","For molecular dynamics MD calculations , the Desmond software [ 49 ] was employed to simulate the solvated complexes . [SEP] B-Application [SEP] Desmond [SEP] B-Citation [SEP] [ 49 ]","For molecular dynamics MD calculations , the Desmond software [ 49 ] was employed to simulate the solvated complexes . [SEP] B-Citation [SEP] [ 49 ] [SEP] B-Application [SEP] Desmond"
9,7,B-Citation [SEP] [ 49 ],B-Application [SEP] Desmond,186,"For molecular dynamics MD calculations , the Desmond software [ 49 ] was employed to simulate the solvated complexes .","For molecular dynamics MD calculations , the Desmond software [ 49 ] was employed to simulate the solvated complexes . [SEP] B-Citation [SEP] [ 49 ] [SEP] B-Application [SEP] Desmond","For molecular dynamics MD calculations , the Desmond software [ 49 ] was employed to simulate the solvated complexes . [SEP] B-Application [SEP] Desmond [SEP] B-Citation [SEP] [ 49 ]"
24,26,B-Application [SEP] the,B-Developer [SEP] (,187,"The output trajectory of indazole 1 was hierarchically clustered , basing on the RMSD matrix , into 15 clusters using trajectory analysis tools from the Maestro ( Schrodinger ) suite .","The output trajectory of indazole 1 was hierarchically clustered , basing on the RMSD matrix , into 15 clusters using trajectory analysis tools from the Maestro ( Schrodinger ) suite . [SEP] B-Application [SEP] the [SEP] B-Developer [SEP] (","The output trajectory of indazole 1 was hierarchically clustered , basing on the RMSD matrix , into 15 clusters using trajectory analysis tools from the Maestro ( Schrodinger ) suite . [SEP] B-Developer [SEP] ( [SEP] B-Application [SEP] the"
26,24,B-Developer [SEP] (,B-Application [SEP] the,187,"The output trajectory of indazole 1 was hierarchically clustered , basing on the RMSD matrix , into 15 clusters using trajectory analysis tools from the Maestro ( Schrodinger ) suite .","The output trajectory of indazole 1 was hierarchically clustered , basing on the RMSD matrix , into 15 clusters using trajectory analysis tools from the Maestro ( Schrodinger ) suite . [SEP] B-Developer [SEP] ( [SEP] B-Application [SEP] the","The output trajectory of indazole 1 was hierarchically clustered , basing on the RMSD matrix , into 15 clusters using trajectory analysis tools from the Maestro ( Schrodinger ) suite . [SEP] B-Application [SEP] the [SEP] B-Developer [SEP] ("
3,4,B-Application [SEP] CAVER,B-Version [SEP] 3 . 0,188,The output of CAVER 3 . 0 provided us with the necessary data for CAVERDOCK computational analysis of the time evolution of individual pathways .,The output of CAVER 3 . 0 provided us with the necessary data for CAVERDOCK computational analysis of the time evolution of individual pathways . [SEP] B-Application [SEP] CAVER [SEP] B-Version [SEP] 3 . 0,The output of CAVER 3 . 0 provided us with the necessary data for CAVERDOCK computational analysis of the time evolution of individual pathways . [SEP] B-Version [SEP] 3 . 0 [SEP] B-Application [SEP] CAVER
3,14,B-Application [SEP] CAVER,B-Application [SEP] CAVERDOCK,188,The output of CAVER 3 . 0 provided us with the necessary data for CAVERDOCK computational analysis of the time evolution of individual pathways .,The output of CAVER 3 . 0 provided us with the necessary data for CAVERDOCK computational analysis of the time evolution of individual pathways . [SEP] B-Application [SEP] CAVER [SEP] B-Application [SEP] CAVERDOCK,The output of CAVER 3 . 0 provided us with the necessary data for CAVERDOCK computational analysis of the time evolution of individual pathways . [SEP] B-Application [SEP] CAVERDOCK [SEP] B-Application [SEP] CAVER
4,3,B-Version [SEP] 3 . 0,B-Application [SEP] CAVER,188,The output of CAVER 3 . 0 provided us with the necessary data for CAVERDOCK computational analysis of the time evolution of individual pathways .,The output of CAVER 3 . 0 provided us with the necessary data for CAVERDOCK computational analysis of the time evolution of individual pathways . [SEP] B-Version [SEP] 3 . 0 [SEP] B-Application [SEP] CAVER,The output of CAVER 3 . 0 provided us with the necessary data for CAVERDOCK computational analysis of the time evolution of individual pathways . [SEP] B-Application [SEP] CAVER [SEP] B-Version [SEP] 3 . 0
4,14,B-Version [SEP] 3 . 0,B-Application [SEP] CAVERDOCK,188,The output of CAVER 3 . 0 provided us with the necessary data for CAVERDOCK computational analysis of the time evolution of individual pathways .,The output of CAVER 3 . 0 provided us with the necessary data for CAVERDOCK computational analysis of the time evolution of individual pathways . [SEP] B-Version [SEP] 3 . 0 [SEP] B-Application [SEP] CAVERDOCK,The output of CAVER 3 . 0 provided us with the necessary data for CAVERDOCK computational analysis of the time evolution of individual pathways . [SEP] B-Application [SEP] CAVERDOCK [SEP] B-Version [SEP] 3 . 0
14,3,B-Application [SEP] CAVERDOCK,B-Application [SEP] CAVER,188,The output of CAVER 3 . 0 provided us with the necessary data for CAVERDOCK computational analysis of the time evolution of individual pathways .,The output of CAVER 3 . 0 provided us with the necessary data for CAVERDOCK computational analysis of the time evolution of individual pathways . [SEP] B-Application [SEP] CAVERDOCK [SEP] B-Application [SEP] CAVER,The output of CAVER 3 . 0 provided us with the necessary data for CAVERDOCK computational analysis of the time evolution of individual pathways . [SEP] B-Application [SEP] CAVER [SEP] B-Application [SEP] CAVERDOCK
14,4,B-Application [SEP] CAVERDOCK,B-Version [SEP] 3 . 0,188,The output of CAVER 3 . 0 provided us with the necessary data for CAVERDOCK computational analysis of the time evolution of individual pathways .,The output of CAVER 3 . 0 provided us with the necessary data for CAVERDOCK computational analysis of the time evolution of individual pathways . [SEP] B-Application [SEP] CAVERDOCK [SEP] B-Version [SEP] 3 . 0,The output of CAVER 3 . 0 provided us with the necessary data for CAVERDOCK computational analysis of the time evolution of individual pathways . [SEP] B-Version [SEP] 3 . 0 [SEP] B-Application [SEP] CAVERDOCK
93,91,B-Developer [SEP] (,B-Version [SEP] SP,189,"The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) .","The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) . [SEP] B-Developer [SEP] ( [SEP] B-Version [SEP] SP","The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) . [SEP] B-Version [SEP] SP [SEP] B-Developer [SEP] ("
93,90,B-Developer [SEP] (,B-Extension [SEP] 75,189,"The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) .","The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) . [SEP] B-Developer [SEP] ( [SEP] B-Extension [SEP] 75","The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) . [SEP] B-Extension [SEP] 75 [SEP] B-Developer [SEP] ("
93,87,B-Developer [SEP] (,B-Version [SEP] . 5 .,189,"The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) .","The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) . [SEP] B-Developer [SEP] ( [SEP] B-Version [SEP] . 5 .","The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) . [SEP] B-Version [SEP] . 5 . [SEP] B-Developer [SEP] ("
93,84,B-Developer [SEP] (,B-Application [SEP] software,189,"The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) .","The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) . [SEP] B-Developer [SEP] ( [SEP] B-Application [SEP] software","The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) . [SEP] B-Application [SEP] software [SEP] B-Developer [SEP] ("
91,93,B-Version [SEP] SP,B-Developer [SEP] (,189,"The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) .","The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) . [SEP] B-Version [SEP] SP [SEP] B-Developer [SEP] (","The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) . [SEP] B-Developer [SEP] ( [SEP] B-Version [SEP] SP"
91,90,B-Version [SEP] SP,B-Extension [SEP] 75,189,"The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) .","The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) . [SEP] B-Version [SEP] SP [SEP] B-Extension [SEP] 75","The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) . [SEP] B-Extension [SEP] 75 [SEP] B-Version [SEP] SP"
91,87,B-Version [SEP] SP,B-Version [SEP] . 5 .,189,"The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) .","The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) . [SEP] B-Version [SEP] SP [SEP] B-Version [SEP] . 5 .","The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) . [SEP] B-Version [SEP] . 5 . [SEP] B-Version [SEP] SP"
91,84,B-Version [SEP] SP,B-Application [SEP] software,189,"The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) .","The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) . [SEP] B-Version [SEP] SP [SEP] B-Application [SEP] software","The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) . [SEP] B-Application [SEP] software [SEP] B-Version [SEP] SP"
90,93,B-Extension [SEP] 75,B-Developer [SEP] (,189,"The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) .","The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) . [SEP] B-Extension [SEP] 75 [SEP] B-Developer [SEP] (","The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) . [SEP] B-Developer [SEP] ( [SEP] B-Extension [SEP] 75"
90,91,B-Extension [SEP] 75,B-Version [SEP] SP,189,"The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) .","The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) . [SEP] B-Extension [SEP] 75 [SEP] B-Version [SEP] SP","The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) . [SEP] B-Version [SEP] SP [SEP] B-Extension [SEP] 75"
90,87,B-Extension [SEP] 75,B-Version [SEP] . 5 .,189,"The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) .","The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) . [SEP] B-Extension [SEP] 75 [SEP] B-Version [SEP] . 5 .","The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) . [SEP] B-Version [SEP] . 5 . [SEP] B-Extension [SEP] 75"
90,84,B-Extension [SEP] 75,B-Application [SEP] software,189,"The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) .","The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) . [SEP] B-Extension [SEP] 75 [SEP] B-Application [SEP] software","The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) . [SEP] B-Application [SEP] software [SEP] B-Extension [SEP] 75"
87,93,B-Version [SEP] . 5 .,B-Developer [SEP] (,189,"The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) .","The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) . [SEP] B-Version [SEP] . 5 . [SEP] B-Developer [SEP] (","The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) . [SEP] B-Developer [SEP] ( [SEP] B-Version [SEP] . 5 ."
87,91,B-Version [SEP] . 5 .,B-Version [SEP] SP,189,"The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) .","The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) . [SEP] B-Version [SEP] . 5 . [SEP] B-Version [SEP] SP","The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) . [SEP] B-Version [SEP] SP [SEP] B-Version [SEP] . 5 ."
87,90,B-Version [SEP] . 5 .,B-Extension [SEP] 75,189,"The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) .","The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) . [SEP] B-Version [SEP] . 5 . [SEP] B-Extension [SEP] 75","The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) . [SEP] B-Extension [SEP] 75 [SEP] B-Version [SEP] . 5 ."
87,84,B-Version [SEP] . 5 .,B-Application [SEP] software,189,"The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) .","The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) . [SEP] B-Version [SEP] . 5 . [SEP] B-Application [SEP] software","The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) . [SEP] B-Application [SEP] software [SEP] B-Version [SEP] . 5 ."
84,93,B-Application [SEP] software,B-Developer [SEP] (,189,"The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) .","The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) . [SEP] B-Application [SEP] software [SEP] B-Developer [SEP] (","The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) . [SEP] B-Developer [SEP] ( [SEP] B-Application [SEP] software"
84,91,B-Application [SEP] software,B-Version [SEP] SP,189,"The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) .","The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) . [SEP] B-Application [SEP] software [SEP] B-Version [SEP] SP","The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) . [SEP] B-Version [SEP] SP [SEP] B-Application [SEP] software"
84,90,B-Application [SEP] software,B-Extension [SEP] 75,189,"The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) .","The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) . [SEP] B-Application [SEP] software [SEP] B-Extension [SEP] 75","The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) . [SEP] B-Extension [SEP] 75 [SEP] B-Application [SEP] software"
84,87,B-Application [SEP] software,B-Version [SEP] . 5 .,189,"The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) .","The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) . [SEP] B-Application [SEP] software [SEP] B-Version [SEP] . 5 .","The MS - ESI parameters were as follows:positiveandnegativemode ; ESI interface voltage , 4 . 5 kV and − 3 . 5 kV ; detector voltage , 1 . 15 kV ; nebulizing gas flow , 1 . 5 mL / min ; drying gas flow , 15 mL / min ; heat block temperature , 200 ° C ; temperature of desolvation line pipe , 250 ° C , SCAN mode 300 - 600 m / z ; and chromatograms were analyzed using software LabSolutions ver . 5 . 75 SP 2 ( Shimadzu , Kyoto , Japan ) . [SEP] B-Version [SEP] . 5 . [SEP] B-Application [SEP] software"
5,17,B-Application [SEP] Orbitrap,B-Application [SEP] Xcalibur,190,"The spectra were recorded in Orbitrap operated with a resolution of 100 , 000 and processed using Xcalibur software ( Thermo Fisher Scientific ) . 4 . 8 .","The spectra were recorded in Orbitrap operated with a resolution of 100 , 000 and processed using Xcalibur software ( Thermo Fisher Scientific ) . 4 . 8 . [SEP] B-Application [SEP] Orbitrap [SEP] B-Application [SEP] Xcalibur","The spectra were recorded in Orbitrap operated with a resolution of 100 , 000 and processed using Xcalibur software ( Thermo Fisher Scientific ) . 4 . 8 . [SEP] B-Application [SEP] Xcalibur [SEP] B-Application [SEP] Orbitrap"
5,20,B-Application [SEP] Orbitrap,B-Developer [SEP] Thermo Fisher Scientific,190,"The spectra were recorded in Orbitrap operated with a resolution of 100 , 000 and processed using Xcalibur software ( Thermo Fisher Scientific ) . 4 . 8 .","The spectra were recorded in Orbitrap operated with a resolution of 100 , 000 and processed using Xcalibur software ( Thermo Fisher Scientific ) . 4 . 8 . [SEP] B-Application [SEP] Orbitrap [SEP] B-Developer [SEP] Thermo Fisher Scientific","The spectra were recorded in Orbitrap operated with a resolution of 100 , 000 and processed using Xcalibur software ( Thermo Fisher Scientific ) . 4 . 8 . [SEP] B-Developer [SEP] Thermo Fisher Scientific [SEP] B-Application [SEP] Orbitrap"
5,25,B-Application [SEP] Orbitrap,B-Version [SEP] 4 . 8 .,190,"The spectra were recorded in Orbitrap operated with a resolution of 100 , 000 and processed using Xcalibur software ( Thermo Fisher Scientific ) . 4 . 8 .","The spectra were recorded in Orbitrap operated with a resolution of 100 , 000 and processed using Xcalibur software ( Thermo Fisher Scientific ) . 4 . 8 . [SEP] B-Application [SEP] Orbitrap [SEP] B-Version [SEP] 4 . 8 .","The spectra were recorded in Orbitrap operated with a resolution of 100 , 000 and processed using Xcalibur software ( Thermo Fisher Scientific ) . 4 . 8 . [SEP] B-Version [SEP] 4 . 8 . [SEP] B-Application [SEP] Orbitrap"
17,5,B-Application [SEP] Xcalibur,B-Application [SEP] Orbitrap,190,"The spectra were recorded in Orbitrap operated with a resolution of 100 , 000 and processed using Xcalibur software ( Thermo Fisher Scientific ) . 4 . 8 .","The spectra were recorded in Orbitrap operated with a resolution of 100 , 000 and processed using Xcalibur software ( Thermo Fisher Scientific ) . 4 . 8 . [SEP] B-Application [SEP] Xcalibur [SEP] B-Application [SEP] Orbitrap","The spectra were recorded in Orbitrap operated with a resolution of 100 , 000 and processed using Xcalibur software ( Thermo Fisher Scientific ) . 4 . 8 . [SEP] B-Application [SEP] Orbitrap [SEP] B-Application [SEP] Xcalibur"
17,20,B-Application [SEP] Xcalibur,B-Developer [SEP] Thermo Fisher Scientific,190,"The spectra were recorded in Orbitrap operated with a resolution of 100 , 000 and processed using Xcalibur software ( Thermo Fisher Scientific ) . 4 . 8 .","The spectra were recorded in Orbitrap operated with a resolution of 100 , 000 and processed using Xcalibur software ( Thermo Fisher Scientific ) . 4 . 8 . [SEP] B-Application [SEP] Xcalibur [SEP] B-Developer [SEP] Thermo Fisher Scientific","The spectra were recorded in Orbitrap operated with a resolution of 100 , 000 and processed using Xcalibur software ( Thermo Fisher Scientific ) . 4 . 8 . [SEP] B-Developer [SEP] Thermo Fisher Scientific [SEP] B-Application [SEP] Xcalibur"
17,25,B-Application [SEP] Xcalibur,B-Version [SEP] 4 . 8 .,190,"The spectra were recorded in Orbitrap operated with a resolution of 100 , 000 and processed using Xcalibur software ( Thermo Fisher Scientific ) . 4 . 8 .","The spectra were recorded in Orbitrap operated with a resolution of 100 , 000 and processed using Xcalibur software ( Thermo Fisher Scientific ) . 4 . 8 . [SEP] B-Application [SEP] Xcalibur [SEP] B-Version [SEP] 4 . 8 .","The spectra were recorded in Orbitrap operated with a resolution of 100 , 000 and processed using Xcalibur software ( Thermo Fisher Scientific ) . 4 . 8 . [SEP] B-Version [SEP] 4 . 8 . [SEP] B-Application [SEP] Xcalibur"
20,5,B-Developer [SEP] Thermo Fisher Scientific,B-Application [SEP] Orbitrap,190,"The spectra were recorded in Orbitrap operated with a resolution of 100 , 000 and processed using Xcalibur software ( Thermo Fisher Scientific ) . 4 . 8 .","The spectra were recorded in Orbitrap operated with a resolution of 100 , 000 and processed using Xcalibur software ( Thermo Fisher Scientific ) . 4 . 8 . [SEP] B-Developer [SEP] Thermo Fisher Scientific [SEP] B-Application [SEP] Orbitrap","The spectra were recorded in Orbitrap operated with a resolution of 100 , 000 and processed using Xcalibur software ( Thermo Fisher Scientific ) . 4 . 8 . [SEP] B-Application [SEP] Orbitrap [SEP] B-Developer [SEP] Thermo Fisher Scientific"
20,17,B-Developer [SEP] Thermo Fisher Scientific,B-Application [SEP] Xcalibur,190,"The spectra were recorded in Orbitrap operated with a resolution of 100 , 000 and processed using Xcalibur software ( Thermo Fisher Scientific ) . 4 . 8 .","The spectra were recorded in Orbitrap operated with a resolution of 100 , 000 and processed using Xcalibur software ( Thermo Fisher Scientific ) . 4 . 8 . [SEP] B-Developer [SEP] Thermo Fisher Scientific [SEP] B-Application [SEP] Xcalibur","The spectra were recorded in Orbitrap operated with a resolution of 100 , 000 and processed using Xcalibur software ( Thermo Fisher Scientific ) . 4 . 8 . [SEP] B-Application [SEP] Xcalibur [SEP] B-Developer [SEP] Thermo Fisher Scientific"
20,25,B-Developer [SEP] Thermo Fisher Scientific,B-Version [SEP] 4 . 8 .,190,"The spectra were recorded in Orbitrap operated with a resolution of 100 , 000 and processed using Xcalibur software ( Thermo Fisher Scientific ) . 4 . 8 .","The spectra were recorded in Orbitrap operated with a resolution of 100 , 000 and processed using Xcalibur software ( Thermo Fisher Scientific ) . 4 . 8 . [SEP] B-Developer [SEP] Thermo Fisher Scientific [SEP] B-Version [SEP] 4 . 8 .","The spectra were recorded in Orbitrap operated with a resolution of 100 , 000 and processed using Xcalibur software ( Thermo Fisher Scientific ) . 4 . 8 . [SEP] B-Version [SEP] 4 . 8 . [SEP] B-Developer [SEP] Thermo Fisher Scientific"
25,5,B-Version [SEP] 4 . 8 .,B-Application [SEP] Orbitrap,190,"The spectra were recorded in Orbitrap operated with a resolution of 100 , 000 and processed using Xcalibur software ( Thermo Fisher Scientific ) . 4 . 8 .","The spectra were recorded in Orbitrap operated with a resolution of 100 , 000 and processed using Xcalibur software ( Thermo Fisher Scientific ) . 4 . 8 . [SEP] B-Version [SEP] 4 . 8 . [SEP] B-Application [SEP] Orbitrap","The spectra were recorded in Orbitrap operated with a resolution of 100 , 000 and processed using Xcalibur software ( Thermo Fisher Scientific ) . 4 . 8 . [SEP] B-Application [SEP] Orbitrap [SEP] B-Version [SEP] 4 . 8 ."
25,17,B-Version [SEP] 4 . 8 .,B-Application [SEP] Xcalibur,190,"The spectra were recorded in Orbitrap operated with a resolution of 100 , 000 and processed using Xcalibur software ( Thermo Fisher Scientific ) . 4 . 8 .","The spectra were recorded in Orbitrap operated with a resolution of 100 , 000 and processed using Xcalibur software ( Thermo Fisher Scientific ) . 4 . 8 . [SEP] B-Version [SEP] 4 . 8 . [SEP] B-Application [SEP] Xcalibur","The spectra were recorded in Orbitrap operated with a resolution of 100 , 000 and processed using Xcalibur software ( Thermo Fisher Scientific ) . 4 . 8 . [SEP] B-Application [SEP] Xcalibur [SEP] B-Version [SEP] 4 . 8 ."
25,20,B-Version [SEP] 4 . 8 .,B-Developer [SEP] Thermo Fisher Scientific,190,"The spectra were recorded in Orbitrap operated with a resolution of 100 , 000 and processed using Xcalibur software ( Thermo Fisher Scientific ) . 4 . 8 .","The spectra were recorded in Orbitrap operated with a resolution of 100 , 000 and processed using Xcalibur software ( Thermo Fisher Scientific ) . 4 . 8 . [SEP] B-Version [SEP] 4 . 8 . [SEP] B-Developer [SEP] Thermo Fisher Scientific","The spectra were recorded in Orbitrap operated with a resolution of 100 , 000 and processed using Xcalibur software ( Thermo Fisher Scientific ) . 4 . 8 . [SEP] B-Developer [SEP] Thermo Fisher Scientific [SEP] B-Version [SEP] 4 . 8 ."
9,10,B-PlugIn [SEP] Caver,B-Version [SEP] 3 . 0,191,"The analysis of the access tunnels was performed by Caver 3 . 0 PyMOL Plugin [ 29 , 38 ] , as described previously [ 39 ] .","The analysis of the access tunnels was performed by Caver 3 . 0 PyMOL Plugin [ 29 , 38 ] , as described previously [ 39 ] . [SEP] B-PlugIn [SEP] Caver [SEP] B-Version [SEP] 3 . 0","The analysis of the access tunnels was performed by Caver 3 . 0 PyMOL Plugin [ 29 , 38 ] , as described previously [ 39 ] . [SEP] B-Version [SEP] 3 . 0 [SEP] B-PlugIn [SEP] Caver"
9,13,B-PlugIn [SEP] Caver,B-PlugIn [SEP] PyMOL Plugin,191,"The analysis of the access tunnels was performed by Caver 3 . 0 PyMOL Plugin [ 29 , 38 ] , as described previously [ 39 ] .","The analysis of the access tunnels was performed by Caver 3 . 0 PyMOL Plugin [ 29 , 38 ] , as described previously [ 39 ] . [SEP] B-PlugIn [SEP] Caver [SEP] B-PlugIn [SEP] PyMOL Plugin","The analysis of the access tunnels was performed by Caver 3 . 0 PyMOL Plugin [ 29 , 38 ] , as described previously [ 39 ] . [SEP] B-PlugIn [SEP] PyMOL Plugin [SEP] B-PlugIn [SEP] Caver"
9,15,B-PlugIn [SEP] Caver,"B-Citation [SEP] [ 29 , 38 ]",191,"The analysis of the access tunnels was performed by Caver 3 . 0 PyMOL Plugin [ 29 , 38 ] , as described previously [ 39 ] .","The analysis of the access tunnels was performed by Caver 3 . 0 PyMOL Plugin [ 29 , 38 ] , as described previously [ 39 ] . [SEP] B-PlugIn [SEP] Caver [SEP] B-Citation [SEP] [ 29 , 38 ]","The analysis of the access tunnels was performed by Caver 3 . 0 PyMOL Plugin [ 29 , 38 ] , as described previously [ 39 ] . [SEP] B-Citation [SEP] [ 29 , 38 ] [SEP] B-PlugIn [SEP] Caver"
10,9,B-Version [SEP] 3 . 0,B-PlugIn [SEP] Caver,191,"The analysis of the access tunnels was performed by Caver 3 . 0 PyMOL Plugin [ 29 , 38 ] , as described previously [ 39 ] .","The analysis of the access tunnels was performed by Caver 3 . 0 PyMOL Plugin [ 29 , 38 ] , as described previously [ 39 ] . [SEP] B-Version [SEP] 3 . 0 [SEP] B-PlugIn [SEP] Caver","The analysis of the access tunnels was performed by Caver 3 . 0 PyMOL Plugin [ 29 , 38 ] , as described previously [ 39 ] . [SEP] B-PlugIn [SEP] Caver [SEP] B-Version [SEP] 3 . 0"
10,13,B-Version [SEP] 3 . 0,B-PlugIn [SEP] PyMOL Plugin,191,"The analysis of the access tunnels was performed by Caver 3 . 0 PyMOL Plugin [ 29 , 38 ] , as described previously [ 39 ] .","The analysis of the access tunnels was performed by Caver 3 . 0 PyMOL Plugin [ 29 , 38 ] , as described previously [ 39 ] . [SEP] B-Version [SEP] 3 . 0 [SEP] B-PlugIn [SEP] PyMOL Plugin","The analysis of the access tunnels was performed by Caver 3 . 0 PyMOL Plugin [ 29 , 38 ] , as described previously [ 39 ] . [SEP] B-PlugIn [SEP] PyMOL Plugin [SEP] B-Version [SEP] 3 . 0"
10,15,B-Version [SEP] 3 . 0,"B-Citation [SEP] [ 29 , 38 ]",191,"The analysis of the access tunnels was performed by Caver 3 . 0 PyMOL Plugin [ 29 , 38 ] , as described previously [ 39 ] .","The analysis of the access tunnels was performed by Caver 3 . 0 PyMOL Plugin [ 29 , 38 ] , as described previously [ 39 ] . [SEP] B-Version [SEP] 3 . 0 [SEP] B-Citation [SEP] [ 29 , 38 ]","The analysis of the access tunnels was performed by Caver 3 . 0 PyMOL Plugin [ 29 , 38 ] , as described previously [ 39 ] . [SEP] B-Citation [SEP] [ 29 , 38 ] [SEP] B-Version [SEP] 3 . 0"
13,9,B-PlugIn [SEP] PyMOL Plugin,B-PlugIn [SEP] Caver,191,"The analysis of the access tunnels was performed by Caver 3 . 0 PyMOL Plugin [ 29 , 38 ] , as described previously [ 39 ] .","The analysis of the access tunnels was performed by Caver 3 . 0 PyMOL Plugin [ 29 , 38 ] , as described previously [ 39 ] . [SEP] B-PlugIn [SEP] PyMOL Plugin [SEP] B-PlugIn [SEP] Caver","The analysis of the access tunnels was performed by Caver 3 . 0 PyMOL Plugin [ 29 , 38 ] , as described previously [ 39 ] . [SEP] B-PlugIn [SEP] Caver [SEP] B-PlugIn [SEP] PyMOL Plugin"
13,10,B-PlugIn [SEP] PyMOL Plugin,B-Version [SEP] 3 . 0,191,"The analysis of the access tunnels was performed by Caver 3 . 0 PyMOL Plugin [ 29 , 38 ] , as described previously [ 39 ] .","The analysis of the access tunnels was performed by Caver 3 . 0 PyMOL Plugin [ 29 , 38 ] , as described previously [ 39 ] . [SEP] B-PlugIn [SEP] PyMOL Plugin [SEP] B-Version [SEP] 3 . 0","The analysis of the access tunnels was performed by Caver 3 . 0 PyMOL Plugin [ 29 , 38 ] , as described previously [ 39 ] . [SEP] B-Version [SEP] 3 . 0 [SEP] B-PlugIn [SEP] PyMOL Plugin"
13,15,B-PlugIn [SEP] PyMOL Plugin,"B-Citation [SEP] [ 29 , 38 ]",191,"The analysis of the access tunnels was performed by Caver 3 . 0 PyMOL Plugin [ 29 , 38 ] , as described previously [ 39 ] .","The analysis of the access tunnels was performed by Caver 3 . 0 PyMOL Plugin [ 29 , 38 ] , as described previously [ 39 ] . [SEP] B-PlugIn [SEP] PyMOL Plugin [SEP] B-Citation [SEP] [ 29 , 38 ]","The analysis of the access tunnels was performed by Caver 3 . 0 PyMOL Plugin [ 29 , 38 ] , as described previously [ 39 ] . [SEP] B-Citation [SEP] [ 29 , 38 ] [SEP] B-PlugIn [SEP] PyMOL Plugin"
15,9,"B-Citation [SEP] [ 29 , 38 ]",B-PlugIn [SEP] Caver,191,"The analysis of the access tunnels was performed by Caver 3 . 0 PyMOL Plugin [ 29 , 38 ] , as described previously [ 39 ] .","The analysis of the access tunnels was performed by Caver 3 . 0 PyMOL Plugin [ 29 , 38 ] , as described previously [ 39 ] . [SEP] B-Citation [SEP] [ 29 , 38 ] [SEP] B-PlugIn [SEP] Caver","The analysis of the access tunnels was performed by Caver 3 . 0 PyMOL Plugin [ 29 , 38 ] , as described previously [ 39 ] . [SEP] B-PlugIn [SEP] Caver [SEP] B-Citation [SEP] [ 29 , 38 ]"
15,10,"B-Citation [SEP] [ 29 , 38 ]",B-Version [SEP] 3 . 0,191,"The analysis of the access tunnels was performed by Caver 3 . 0 PyMOL Plugin [ 29 , 38 ] , as described previously [ 39 ] .","The analysis of the access tunnels was performed by Caver 3 . 0 PyMOL Plugin [ 29 , 38 ] , as described previously [ 39 ] . [SEP] B-Citation [SEP] [ 29 , 38 ] [SEP] B-Version [SEP] 3 . 0","The analysis of the access tunnels was performed by Caver 3 . 0 PyMOL Plugin [ 29 , 38 ] , as described previously [ 39 ] . [SEP] B-Version [SEP] 3 . 0 [SEP] B-Citation [SEP] [ 29 , 38 ]"
15,13,"B-Citation [SEP] [ 29 , 38 ]",B-PlugIn [SEP] PyMOL Plugin,191,"The analysis of the access tunnels was performed by Caver 3 . 0 PyMOL Plugin [ 29 , 38 ] , as described previously [ 39 ] .","The analysis of the access tunnels was performed by Caver 3 . 0 PyMOL Plugin [ 29 , 38 ] , as described previously [ 39 ] . [SEP] B-Citation [SEP] [ 29 , 38 ] [SEP] B-PlugIn [SEP] PyMOL Plugin","The analysis of the access tunnels was performed by Caver 3 . 0 PyMOL Plugin [ 29 , 38 ] , as described previously [ 39 ] . [SEP] B-PlugIn [SEP] PyMOL Plugin [SEP] B-Citation [SEP] [ 29 , 38 ]"
6,7,B-PlugIn [SEP] PyMOL,B-Version [SEP] 1 . 7,192,"The molecular structure was opened using PyMOL 1 . 7 and the starting point coordinates were set in the position corresponding to 30 . 969 , 29 . 83 , and 38 . 043 A .","The molecular structure was opened using PyMOL 1 . 7 and the starting point coordinates were set in the position corresponding to 30 . 969 , 29 . 83 , and 38 . 043 A . [SEP] B-PlugIn [SEP] PyMOL [SEP] B-Version [SEP] 1 . 7","The molecular structure was opened using PyMOL 1 . 7 and the starting point coordinates were set in the position corresponding to 30 . 969 , 29 . 83 , and 38 . 043 A . [SEP] B-Version [SEP] 1 . 7 [SEP] B-PlugIn [SEP] PyMOL"
7,6,B-Version [SEP] 1 . 7,B-PlugIn [SEP] PyMOL,192,"The molecular structure was opened using PyMOL 1 . 7 and the starting point coordinates were set in the position corresponding to 30 . 969 , 29 . 83 , and 38 . 043 A .","The molecular structure was opened using PyMOL 1 . 7 and the starting point coordinates were set in the position corresponding to 30 . 969 , 29 . 83 , and 38 . 043 A . [SEP] B-Version [SEP] 1 . 7 [SEP] B-PlugIn [SEP] PyMOL","The molecular structure was opened using PyMOL 1 . 7 and the starting point coordinates were set in the position corresponding to 30 . 969 , 29 . 83 , and 38 . 043 A . [SEP] B-PlugIn [SEP] PyMOL [SEP] B-Version [SEP] 1 . 7"
24,21,B-Citation [SEP] [ 40 ],B-Version [SEP] 1 . 1,193,"In order to explore the accessibility of substrates rutin and isoquercitrin to the active site of AnRut protein , the CAVERDOCK 1 . 1 [ 40 ] tool was applied .","In order to explore the accessibility of substrates rutin and isoquercitrin to the active site of AnRut protein , the CAVERDOCK 1 . 1 [ 40 ] tool was applied . [SEP] B-Citation [SEP] [ 40 ] [SEP] B-Version [SEP] 1 . 1","In order to explore the accessibility of substrates rutin and isoquercitrin to the active site of AnRut protein , the CAVERDOCK 1 . 1 [ 40 ] tool was applied . [SEP] B-Version [SEP] 1 . 1 [SEP] B-Citation [SEP] [ 40 ]"
24,20,B-Citation [SEP] [ 40 ],B-Application [SEP] CAVERDOCK,193,"In order to explore the accessibility of substrates rutin and isoquercitrin to the active site of AnRut protein , the CAVERDOCK 1 . 1 [ 40 ] tool was applied .","In order to explore the accessibility of substrates rutin and isoquercitrin to the active site of AnRut protein , the CAVERDOCK 1 . 1 [ 40 ] tool was applied . [SEP] B-Citation [SEP] [ 40 ] [SEP] B-Application [SEP] CAVERDOCK","In order to explore the accessibility of substrates rutin and isoquercitrin to the active site of AnRut protein , the CAVERDOCK 1 . 1 [ 40 ] tool was applied . [SEP] B-Application [SEP] CAVERDOCK [SEP] B-Citation [SEP] [ 40 ]"
21,24,B-Version [SEP] 1 . 1,B-Citation [SEP] [ 40 ],193,"In order to explore the accessibility of substrates rutin and isoquercitrin to the active site of AnRut protein , the CAVERDOCK 1 . 1 [ 40 ] tool was applied .","In order to explore the accessibility of substrates rutin and isoquercitrin to the active site of AnRut protein , the CAVERDOCK 1 . 1 [ 40 ] tool was applied . [SEP] B-Version [SEP] 1 . 1 [SEP] B-Citation [SEP] [ 40 ]","In order to explore the accessibility of substrates rutin and isoquercitrin to the active site of AnRut protein , the CAVERDOCK 1 . 1 [ 40 ] tool was applied . [SEP] B-Citation [SEP] [ 40 ] [SEP] B-Version [SEP] 1 . 1"
21,20,B-Version [SEP] 1 . 1,B-Application [SEP] CAVERDOCK,193,"In order to explore the accessibility of substrates rutin and isoquercitrin to the active site of AnRut protein , the CAVERDOCK 1 . 1 [ 40 ] tool was applied .","In order to explore the accessibility of substrates rutin and isoquercitrin to the active site of AnRut protein , the CAVERDOCK 1 . 1 [ 40 ] tool was applied . [SEP] B-Version [SEP] 1 . 1 [SEP] B-Application [SEP] CAVERDOCK","In order to explore the accessibility of substrates rutin and isoquercitrin to the active site of AnRut protein , the CAVERDOCK 1 . 1 [ 40 ] tool was applied . [SEP] B-Application [SEP] CAVERDOCK [SEP] B-Version [SEP] 1 . 1"
20,24,B-Application [SEP] CAVERDOCK,B-Citation [SEP] [ 40 ],193,"In order to explore the accessibility of substrates rutin and isoquercitrin to the active site of AnRut protein , the CAVERDOCK 1 . 1 [ 40 ] tool was applied .","In order to explore the accessibility of substrates rutin and isoquercitrin to the active site of AnRut protein , the CAVERDOCK 1 . 1 [ 40 ] tool was applied . [SEP] B-Application [SEP] CAVERDOCK [SEP] B-Citation [SEP] [ 40 ]","In order to explore the accessibility of substrates rutin and isoquercitrin to the active site of AnRut protein , the CAVERDOCK 1 . 1 [ 40 ] tool was applied . [SEP] B-Citation [SEP] [ 40 ] [SEP] B-Application [SEP] CAVERDOCK"
20,21,B-Application [SEP] CAVERDOCK,B-Version [SEP] 1 . 1,193,"In order to explore the accessibility of substrates rutin and isoquercitrin to the active site of AnRut protein , the CAVERDOCK 1 . 1 [ 40 ] tool was applied .","In order to explore the accessibility of substrates rutin and isoquercitrin to the active site of AnRut protein , the CAVERDOCK 1 . 1 [ 40 ] tool was applied . [SEP] B-Application [SEP] CAVERDOCK [SEP] B-Version [SEP] 1 . 1","In order to explore the accessibility of substrates rutin and isoquercitrin to the active site of AnRut protein , the CAVERDOCK 1 . 1 [ 40 ] tool was applied . [SEP] B-Version [SEP] 1 . 1 [SEP] B-Application [SEP] CAVERDOCK"
4,6,B-Application [SEP] CaverDock,B-Application [SEP] CAVER,194,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine .,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine . [SEP] B-Application [SEP] CaverDock [SEP] B-Application [SEP] CAVER,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine . [SEP] B-Application [SEP] CAVER [SEP] B-Application [SEP] CaverDock
4,13,B-Application [SEP] CaverDock,B-Application [SEP] modified Autodock,194,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine .,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine . [SEP] B-Application [SEP] CaverDock [SEP] B-Application [SEP] modified Autodock,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine . [SEP] B-Application [SEP] modified Autodock [SEP] B-Application [SEP] CaverDock
4,16,B-Application [SEP] CaverDock,B-Version [SEP] ver . 1 . 1,194,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine .,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine . [SEP] B-Application [SEP] CaverDock [SEP] B-Version [SEP] ver . 1 . 1,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine . [SEP] B-Version [SEP] ver . 1 . 1 [SEP] B-Application [SEP] CaverDock
4,21,B-Application [SEP] CaverDock,B-Citation [SEP] . 2 [,194,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine .,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine . [SEP] B-Application [SEP] CaverDock [SEP] B-Citation [SEP] . 2 [,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine . [SEP] B-Citation [SEP] . 2 [ [SEP] B-Application [SEP] CaverDock
6,4,B-Application [SEP] CAVER,B-Application [SEP] CaverDock,194,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine .,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine . [SEP] B-Application [SEP] CAVER [SEP] B-Application [SEP] CaverDock,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine . [SEP] B-Application [SEP] CaverDock [SEP] B-Application [SEP] CAVER
6,13,B-Application [SEP] CAVER,B-Application [SEP] modified Autodock,194,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine .,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine . [SEP] B-Application [SEP] CAVER [SEP] B-Application [SEP] modified Autodock,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine . [SEP] B-Application [SEP] modified Autodock [SEP] B-Application [SEP] CAVER
6,16,B-Application [SEP] CAVER,B-Version [SEP] ver . 1 . 1,194,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine .,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine . [SEP] B-Application [SEP] CAVER [SEP] B-Version [SEP] ver . 1 . 1,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine . [SEP] B-Version [SEP] ver . 1 . 1 [SEP] B-Application [SEP] CAVER
6,21,B-Application [SEP] CAVER,B-Citation [SEP] . 2 [,194,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine .,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine . [SEP] B-Application [SEP] CAVER [SEP] B-Citation [SEP] . 2 [,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine . [SEP] B-Citation [SEP] . 2 [ [SEP] B-Application [SEP] CAVER
13,4,B-Application [SEP] modified Autodock,B-Application [SEP] CaverDock,194,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine .,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine . [SEP] B-Application [SEP] modified Autodock [SEP] B-Application [SEP] CaverDock,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine . [SEP] B-Application [SEP] CaverDock [SEP] B-Application [SEP] modified Autodock
13,6,B-Application [SEP] modified Autodock,B-Application [SEP] CAVER,194,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine .,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine . [SEP] B-Application [SEP] modified Autodock [SEP] B-Application [SEP] CAVER,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine . [SEP] B-Application [SEP] CAVER [SEP] B-Application [SEP] modified Autodock
13,16,B-Application [SEP] modified Autodock,B-Version [SEP] ver . 1 . 1,194,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine .,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine . [SEP] B-Application [SEP] modified Autodock [SEP] B-Version [SEP] ver . 1 . 1,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine . [SEP] B-Version [SEP] ver . 1 . 1 [SEP] B-Application [SEP] modified Autodock
13,21,B-Application [SEP] modified Autodock,B-Citation [SEP] . 2 [,194,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine .,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine . [SEP] B-Application [SEP] modified Autodock [SEP] B-Citation [SEP] . 2 [,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine . [SEP] B-Citation [SEP] . 2 [ [SEP] B-Application [SEP] modified Autodock
16,4,B-Version [SEP] ver . 1 . 1,B-Application [SEP] CaverDock,194,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine .,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine . [SEP] B-Version [SEP] ver . 1 . 1 [SEP] B-Application [SEP] CaverDock,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine . [SEP] B-Application [SEP] CaverDock [SEP] B-Version [SEP] ver . 1 . 1
16,6,B-Version [SEP] ver . 1 . 1,B-Application [SEP] CAVER,194,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine .,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine . [SEP] B-Version [SEP] ver . 1 . 1 [SEP] B-Application [SEP] CAVER,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine . [SEP] B-Application [SEP] CAVER [SEP] B-Version [SEP] ver . 1 . 1
16,13,B-Version [SEP] ver . 1 . 1,B-Application [SEP] modified Autodock,194,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine .,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine . [SEP] B-Version [SEP] ver . 1 . 1 [SEP] B-Application [SEP] modified Autodock,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine . [SEP] B-Application [SEP] modified Autodock [SEP] B-Version [SEP] ver . 1 . 1
16,21,B-Version [SEP] ver . 1 . 1,B-Citation [SEP] . 2 [,194,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine .,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine . [SEP] B-Version [SEP] ver . 1 . 1 [SEP] B-Citation [SEP] . 2 [,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine . [SEP] B-Citation [SEP] . 2 [ [SEP] B-Version [SEP] ver . 1 . 1
21,4,B-Citation [SEP] . 2 [,B-Application [SEP] CaverDock,194,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine .,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine . [SEP] B-Citation [SEP] . 2 [ [SEP] B-Application [SEP] CaverDock,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine . [SEP] B-Application [SEP] CaverDock [SEP] B-Citation [SEP] . 2 [
21,6,B-Citation [SEP] . 2 [,B-Application [SEP] CAVER,194,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine .,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine . [SEP] B-Citation [SEP] . 2 [ [SEP] B-Application [SEP] CAVER,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine . [SEP] B-Application [SEP] CAVER [SEP] B-Citation [SEP] . 2 [
21,13,B-Citation [SEP] . 2 [,B-Application [SEP] modified Autodock,194,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine .,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine . [SEP] B-Citation [SEP] . 2 [ [SEP] B-Application [SEP] modified Autodock,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine . [SEP] B-Application [SEP] modified Autodock [SEP] B-Citation [SEP] . 2 [
21,16,B-Citation [SEP] . 2 [,B-Version [SEP] ver . 1 . 1,194,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine .,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine . [SEP] B-Citation [SEP] . 2 [ [SEP] B-Version [SEP] ver . 1 . 1,The current version of CaverDock uses CAVER for the pathway identification and a modified Autodock Vina ver . 1 . 1 . 2 [ 41 ] as the docking engine . [SEP] B-Version [SEP] ver . 1 . 1 [SEP] B-Citation [SEP] . 2 [
11,13,B-Application [SEP] the,B-Citation [SEP] database [ 42,195,The structures of the rutin and isoquercitrin substrates were obtained from the Pubchem database [ 42 ] and their molecular geometry was optimized using Chimera [ 43 ] .,The structures of the rutin and isoquercitrin substrates were obtained from the Pubchem database [ 42 ] and their molecular geometry was optimized using Chimera [ 43 ] . [SEP] B-Application [SEP] the [SEP] B-Citation [SEP] database [ 42,The structures of the rutin and isoquercitrin substrates were obtained from the Pubchem database [ 42 ] and their molecular geometry was optimized using Chimera [ 43 ] . [SEP] B-Citation [SEP] database [ 42 [SEP] B-Application [SEP] the
11,23,B-Application [SEP] the,B-Application [SEP] using,195,The structures of the rutin and isoquercitrin substrates were obtained from the Pubchem database [ 42 ] and their molecular geometry was optimized using Chimera [ 43 ] .,The structures of the rutin and isoquercitrin substrates were obtained from the Pubchem database [ 42 ] and their molecular geometry was optimized using Chimera [ 43 ] . [SEP] B-Application [SEP] the [SEP] B-Application [SEP] using,The structures of the rutin and isoquercitrin substrates were obtained from the Pubchem database [ 42 ] and their molecular geometry was optimized using Chimera [ 43 ] . [SEP] B-Application [SEP] using [SEP] B-Application [SEP] the
11,24,B-Application [SEP] the,B-Citation [SEP] Chimera [ 43,195,The structures of the rutin and isoquercitrin substrates were obtained from the Pubchem database [ 42 ] and their molecular geometry was optimized using Chimera [ 43 ] .,The structures of the rutin and isoquercitrin substrates were obtained from the Pubchem database [ 42 ] and their molecular geometry was optimized using Chimera [ 43 ] . [SEP] B-Application [SEP] the [SEP] B-Citation [SEP] Chimera [ 43,The structures of the rutin and isoquercitrin substrates were obtained from the Pubchem database [ 42 ] and their molecular geometry was optimized using Chimera [ 43 ] . [SEP] B-Citation [SEP] Chimera [ 43 [SEP] B-Application [SEP] the
13,11,B-Citation [SEP] database [ 42,B-Application [SEP] the,195,The structures of the rutin and isoquercitrin substrates were obtained from the Pubchem database [ 42 ] and their molecular geometry was optimized using Chimera [ 43 ] .,The structures of the rutin and isoquercitrin substrates were obtained from the Pubchem database [ 42 ] and their molecular geometry was optimized using Chimera [ 43 ] . [SEP] B-Citation [SEP] database [ 42 [SEP] B-Application [SEP] the,The structures of the rutin and isoquercitrin substrates were obtained from the Pubchem database [ 42 ] and their molecular geometry was optimized using Chimera [ 43 ] . [SEP] B-Application [SEP] the [SEP] B-Citation [SEP] database [ 42
13,23,B-Citation [SEP] database [ 42,B-Application [SEP] using,195,The structures of the rutin and isoquercitrin substrates were obtained from the Pubchem database [ 42 ] and their molecular geometry was optimized using Chimera [ 43 ] .,The structures of the rutin and isoquercitrin substrates were obtained from the Pubchem database [ 42 ] and their molecular geometry was optimized using Chimera [ 43 ] . [SEP] B-Citation [SEP] database [ 42 [SEP] B-Application [SEP] using,The structures of the rutin and isoquercitrin substrates were obtained from the Pubchem database [ 42 ] and their molecular geometry was optimized using Chimera [ 43 ] . [SEP] B-Application [SEP] using [SEP] B-Citation [SEP] database [ 42
13,24,B-Citation [SEP] database [ 42,B-Citation [SEP] Chimera [ 43,195,The structures of the rutin and isoquercitrin substrates were obtained from the Pubchem database [ 42 ] and their molecular geometry was optimized using Chimera [ 43 ] .,The structures of the rutin and isoquercitrin substrates were obtained from the Pubchem database [ 42 ] and their molecular geometry was optimized using Chimera [ 43 ] . [SEP] B-Citation [SEP] database [ 42 [SEP] B-Citation [SEP] Chimera [ 43,The structures of the rutin and isoquercitrin substrates were obtained from the Pubchem database [ 42 ] and their molecular geometry was optimized using Chimera [ 43 ] . [SEP] B-Citation [SEP] Chimera [ 43 [SEP] B-Citation [SEP] database [ 42
23,11,B-Application [SEP] using,B-Application [SEP] the,195,The structures of the rutin and isoquercitrin substrates were obtained from the Pubchem database [ 42 ] and their molecular geometry was optimized using Chimera [ 43 ] .,The structures of the rutin and isoquercitrin substrates were obtained from the Pubchem database [ 42 ] and their molecular geometry was optimized using Chimera [ 43 ] . [SEP] B-Application [SEP] using [SEP] B-Application [SEP] the,The structures of the rutin and isoquercitrin substrates were obtained from the Pubchem database [ 42 ] and their molecular geometry was optimized using Chimera [ 43 ] . [SEP] B-Application [SEP] the [SEP] B-Application [SEP] using
23,13,B-Application [SEP] using,B-Citation [SEP] database [ 42,195,The structures of the rutin and isoquercitrin substrates were obtained from the Pubchem database [ 42 ] and their molecular geometry was optimized using Chimera [ 43 ] .,The structures of the rutin and isoquercitrin substrates were obtained from the Pubchem database [ 42 ] and their molecular geometry was optimized using Chimera [ 43 ] . [SEP] B-Application [SEP] using [SEP] B-Citation [SEP] database [ 42,The structures of the rutin and isoquercitrin substrates were obtained from the Pubchem database [ 42 ] and their molecular geometry was optimized using Chimera [ 43 ] . [SEP] B-Citation [SEP] database [ 42 [SEP] B-Application [SEP] using
23,24,B-Application [SEP] using,B-Citation [SEP] Chimera [ 43,195,The structures of the rutin and isoquercitrin substrates were obtained from the Pubchem database [ 42 ] and their molecular geometry was optimized using Chimera [ 43 ] .,The structures of the rutin and isoquercitrin substrates were obtained from the Pubchem database [ 42 ] and their molecular geometry was optimized using Chimera [ 43 ] . [SEP] B-Application [SEP] using [SEP] B-Citation [SEP] Chimera [ 43,The structures of the rutin and isoquercitrin substrates were obtained from the Pubchem database [ 42 ] and their molecular geometry was optimized using Chimera [ 43 ] . [SEP] B-Citation [SEP] Chimera [ 43 [SEP] B-Application [SEP] using
24,11,B-Citation [SEP] Chimera [ 43,B-Application [SEP] the,195,The structures of the rutin and isoquercitrin substrates were obtained from the Pubchem database [ 42 ] and their molecular geometry was optimized using Chimera [ 43 ] .,The structures of the rutin and isoquercitrin substrates were obtained from the Pubchem database [ 42 ] and their molecular geometry was optimized using Chimera [ 43 ] . [SEP] B-Citation [SEP] Chimera [ 43 [SEP] B-Application [SEP] the,The structures of the rutin and isoquercitrin substrates were obtained from the Pubchem database [ 42 ] and their molecular geometry was optimized using Chimera [ 43 ] . [SEP] B-Application [SEP] the [SEP] B-Citation [SEP] Chimera [ 43
24,13,B-Citation [SEP] Chimera [ 43,B-Citation [SEP] database [ 42,195,The structures of the rutin and isoquercitrin substrates were obtained from the Pubchem database [ 42 ] and their molecular geometry was optimized using Chimera [ 43 ] .,The structures of the rutin and isoquercitrin substrates were obtained from the Pubchem database [ 42 ] and their molecular geometry was optimized using Chimera [ 43 ] . [SEP] B-Citation [SEP] Chimera [ 43 [SEP] B-Citation [SEP] database [ 42,The structures of the rutin and isoquercitrin substrates were obtained from the Pubchem database [ 42 ] and their molecular geometry was optimized using Chimera [ 43 ] . [SEP] B-Citation [SEP] database [ 42 [SEP] B-Citation [SEP] Chimera [ 43
24,23,B-Citation [SEP] Chimera [ 43,B-Application [SEP] using,195,The structures of the rutin and isoquercitrin substrates were obtained from the Pubchem database [ 42 ] and their molecular geometry was optimized using Chimera [ 43 ] .,The structures of the rutin and isoquercitrin substrates were obtained from the Pubchem database [ 42 ] and their molecular geometry was optimized using Chimera [ 43 ] . [SEP] B-Citation [SEP] Chimera [ 43 [SEP] B-Application [SEP] using,The structures of the rutin and isoquercitrin substrates were obtained from the Pubchem database [ 42 ] and their molecular geometry was optimized using Chimera [ 43 ] . [SEP] B-Application [SEP] using [SEP] B-Citation [SEP] Chimera [ 43
13,17,B-Application [SEP] DS Visualizer,B-Version [SEP] 20 . 1 . 0 . 19295,196,"The involvement of active site residues in the substrate binding was examined by DS Visualizer ver . 20 . 1 . 0 . 19295 [ 44 ] , which provided all types of non - covalent interactions in two - dimensional ( 2D ) diagram . 4 . 10 .","The involvement of active site residues in the substrate binding was examined by DS Visualizer ver . 20 . 1 . 0 . 19295 [ 44 ] , which provided all types of non - covalent interactions in two - dimensional ( 2D ) diagram . 4 . 10 . [SEP] B-Application [SEP] DS Visualizer [SEP] B-Version [SEP] 20 . 1 . 0 . 19295","The involvement of active site residues in the substrate binding was examined by DS Visualizer ver . 20 . 1 . 0 . 19295 [ 44 ] , which provided all types of non - covalent interactions in two - dimensional ( 2D ) diagram . 4 . 10 . [SEP] B-Version [SEP] 20 . 1 . 0 . 19295 [SEP] B-Application [SEP] DS Visualizer"
13,24,B-Application [SEP] DS Visualizer,B-Citation [SEP] [ 44 ],196,"The involvement of active site residues in the substrate binding was examined by DS Visualizer ver . 20 . 1 . 0 . 19295 [ 44 ] , which provided all types of non - covalent interactions in two - dimensional ( 2D ) diagram . 4 . 10 .","The involvement of active site residues in the substrate binding was examined by DS Visualizer ver . 20 . 1 . 0 . 19295 [ 44 ] , which provided all types of non - covalent interactions in two - dimensional ( 2D ) diagram . 4 . 10 . [SEP] B-Application [SEP] DS Visualizer [SEP] B-Citation [SEP] [ 44 ]","The involvement of active site residues in the substrate binding was examined by DS Visualizer ver . 20 . 1 . 0 . 19295 [ 44 ] , which provided all types of non - covalent interactions in two - dimensional ( 2D ) diagram . 4 . 10 . [SEP] B-Citation [SEP] [ 44 ] [SEP] B-Application [SEP] DS Visualizer"
13,46,B-Application [SEP] DS Visualizer,B-Version [SEP] 4 . 10,196,"The involvement of active site residues in the substrate binding was examined by DS Visualizer ver . 20 . 1 . 0 . 19295 [ 44 ] , which provided all types of non - covalent interactions in two - dimensional ( 2D ) diagram . 4 . 10 .","The involvement of active site residues in the substrate binding was examined by DS Visualizer ver . 20 . 1 . 0 . 19295 [ 44 ] , which provided all types of non - covalent interactions in two - dimensional ( 2D ) diagram . 4 . 10 . [SEP] B-Application [SEP] DS Visualizer [SEP] B-Version [SEP] 4 . 10","The involvement of active site residues in the substrate binding was examined by DS Visualizer ver . 20 . 1 . 0 . 19295 [ 44 ] , which provided all types of non - covalent interactions in two - dimensional ( 2D ) diagram . 4 . 10 . [SEP] B-Version [SEP] 4 . 10 [SEP] B-Application [SEP] DS Visualizer"
17,13,B-Version [SEP] 20 . 1 . 0 . 19295,B-Application [SEP] DS Visualizer,196,"The involvement of active site residues in the substrate binding was examined by DS Visualizer ver . 20 . 1 . 0 . 19295 [ 44 ] , which provided all types of non - covalent interactions in two - dimensional ( 2D ) diagram . 4 . 10 .","The involvement of active site residues in the substrate binding was examined by DS Visualizer ver . 20 . 1 . 0 . 19295 [ 44 ] , which provided all types of non - covalent interactions in two - dimensional ( 2D ) diagram . 4 . 10 . [SEP] B-Version [SEP] 20 . 1 . 0 . 19295 [SEP] B-Application [SEP] DS Visualizer","The involvement of active site residues in the substrate binding was examined by DS Visualizer ver . 20 . 1 . 0 . 19295 [ 44 ] , which provided all types of non - covalent interactions in two - dimensional ( 2D ) diagram . 4 . 10 . [SEP] B-Application [SEP] DS Visualizer [SEP] B-Version [SEP] 20 . 1 . 0 . 19295"
17,24,B-Version [SEP] 20 . 1 . 0 . 19295,B-Citation [SEP] [ 44 ],196,"The involvement of active site residues in the substrate binding was examined by DS Visualizer ver . 20 . 1 . 0 . 19295 [ 44 ] , which provided all types of non - covalent interactions in two - dimensional ( 2D ) diagram . 4 . 10 .","The involvement of active site residues in the substrate binding was examined by DS Visualizer ver . 20 . 1 . 0 . 19295 [ 44 ] , which provided all types of non - covalent interactions in two - dimensional ( 2D ) diagram . 4 . 10 . [SEP] B-Version [SEP] 20 . 1 . 0 . 19295 [SEP] B-Citation [SEP] [ 44 ]","The involvement of active site residues in the substrate binding was examined by DS Visualizer ver . 20 . 1 . 0 . 19295 [ 44 ] , which provided all types of non - covalent interactions in two - dimensional ( 2D ) diagram . 4 . 10 . [SEP] B-Citation [SEP] [ 44 ] [SEP] B-Version [SEP] 20 . 1 . 0 . 19295"
17,46,B-Version [SEP] 20 . 1 . 0 . 19295,B-Version [SEP] 4 . 10,196,"The involvement of active site residues in the substrate binding was examined by DS Visualizer ver . 20 . 1 . 0 . 19295 [ 44 ] , which provided all types of non - covalent interactions in two - dimensional ( 2D ) diagram . 4 . 10 .","The involvement of active site residues in the substrate binding was examined by DS Visualizer ver . 20 . 1 . 0 . 19295 [ 44 ] , which provided all types of non - covalent interactions in two - dimensional ( 2D ) diagram . 4 . 10 . [SEP] B-Version [SEP] 20 . 1 . 0 . 19295 [SEP] B-Version [SEP] 4 . 10","The involvement of active site residues in the substrate binding was examined by DS Visualizer ver . 20 . 1 . 0 . 19295 [ 44 ] , which provided all types of non - covalent interactions in two - dimensional ( 2D ) diagram . 4 . 10 . [SEP] B-Version [SEP] 4 . 10 [SEP] B-Version [SEP] 20 . 1 . 0 . 19295"
24,13,B-Citation [SEP] [ 44 ],B-Application [SEP] DS Visualizer,196,"The involvement of active site residues in the substrate binding was examined by DS Visualizer ver . 20 . 1 . 0 . 19295 [ 44 ] , which provided all types of non - covalent interactions in two - dimensional ( 2D ) diagram . 4 . 10 .","The involvement of active site residues in the substrate binding was examined by DS Visualizer ver . 20 . 1 . 0 . 19295 [ 44 ] , which provided all types of non - covalent interactions in two - dimensional ( 2D ) diagram . 4 . 10 . [SEP] B-Citation [SEP] [ 44 ] [SEP] B-Application [SEP] DS Visualizer","The involvement of active site residues in the substrate binding was examined by DS Visualizer ver . 20 . 1 . 0 . 19295 [ 44 ] , which provided all types of non - covalent interactions in two - dimensional ( 2D ) diagram . 4 . 10 . [SEP] B-Application [SEP] DS Visualizer [SEP] B-Citation [SEP] [ 44 ]"
24,17,B-Citation [SEP] [ 44 ],B-Version [SEP] 20 . 1 . 0 . 19295,196,"The involvement of active site residues in the substrate binding was examined by DS Visualizer ver . 20 . 1 . 0 . 19295 [ 44 ] , which provided all types of non - covalent interactions in two - dimensional ( 2D ) diagram . 4 . 10 .","The involvement of active site residues in the substrate binding was examined by DS Visualizer ver . 20 . 1 . 0 . 19295 [ 44 ] , which provided all types of non - covalent interactions in two - dimensional ( 2D ) diagram . 4 . 10 . [SEP] B-Citation [SEP] [ 44 ] [SEP] B-Version [SEP] 20 . 1 . 0 . 19295","The involvement of active site residues in the substrate binding was examined by DS Visualizer ver . 20 . 1 . 0 . 19295 [ 44 ] , which provided all types of non - covalent interactions in two - dimensional ( 2D ) diagram . 4 . 10 . [SEP] B-Version [SEP] 20 . 1 . 0 . 19295 [SEP] B-Citation [SEP] [ 44 ]"
24,46,B-Citation [SEP] [ 44 ],B-Version [SEP] 4 . 10,196,"The involvement of active site residues in the substrate binding was examined by DS Visualizer ver . 20 . 1 . 0 . 19295 [ 44 ] , which provided all types of non - covalent interactions in two - dimensional ( 2D ) diagram . 4 . 10 .","The involvement of active site residues in the substrate binding was examined by DS Visualizer ver . 20 . 1 . 0 . 19295 [ 44 ] , which provided all types of non - covalent interactions in two - dimensional ( 2D ) diagram . 4 . 10 . [SEP] B-Citation [SEP] [ 44 ] [SEP] B-Version [SEP] 4 . 10","The involvement of active site residues in the substrate binding was examined by DS Visualizer ver . 20 . 1 . 0 . 19295 [ 44 ] , which provided all types of non - covalent interactions in two - dimensional ( 2D ) diagram . 4 . 10 . [SEP] B-Version [SEP] 4 . 10 [SEP] B-Citation [SEP] [ 44 ]"
46,13,B-Version [SEP] 4 . 10,B-Application [SEP] DS Visualizer,196,"The involvement of active site residues in the substrate binding was examined by DS Visualizer ver . 20 . 1 . 0 . 19295 [ 44 ] , which provided all types of non - covalent interactions in two - dimensional ( 2D ) diagram . 4 . 10 .","The involvement of active site residues in the substrate binding was examined by DS Visualizer ver . 20 . 1 . 0 . 19295 [ 44 ] , which provided all types of non - covalent interactions in two - dimensional ( 2D ) diagram . 4 . 10 . [SEP] B-Version [SEP] 4 . 10 [SEP] B-Application [SEP] DS Visualizer","The involvement of active site residues in the substrate binding was examined by DS Visualizer ver . 20 . 1 . 0 . 19295 [ 44 ] , which provided all types of non - covalent interactions in two - dimensional ( 2D ) diagram . 4 . 10 . [SEP] B-Application [SEP] DS Visualizer [SEP] B-Version [SEP] 4 . 10"
46,17,B-Version [SEP] 4 . 10,B-Version [SEP] 20 . 1 . 0 . 19295,196,"The involvement of active site residues in the substrate binding was examined by DS Visualizer ver . 20 . 1 . 0 . 19295 [ 44 ] , which provided all types of non - covalent interactions in two - dimensional ( 2D ) diagram . 4 . 10 .","The involvement of active site residues in the substrate binding was examined by DS Visualizer ver . 20 . 1 . 0 . 19295 [ 44 ] , which provided all types of non - covalent interactions in two - dimensional ( 2D ) diagram . 4 . 10 . [SEP] B-Version [SEP] 4 . 10 [SEP] B-Version [SEP] 20 . 1 . 0 . 19295","The involvement of active site residues in the substrate binding was examined by DS Visualizer ver . 20 . 1 . 0 . 19295 [ 44 ] , which provided all types of non - covalent interactions in two - dimensional ( 2D ) diagram . 4 . 10 . [SEP] B-Version [SEP] 20 . 1 . 0 . 19295 [SEP] B-Version [SEP] 4 . 10"
46,24,B-Version [SEP] 4 . 10,B-Citation [SEP] [ 44 ],196,"The involvement of active site residues in the substrate binding was examined by DS Visualizer ver . 20 . 1 . 0 . 19295 [ 44 ] , which provided all types of non - covalent interactions in two - dimensional ( 2D ) diagram . 4 . 10 .","The involvement of active site residues in the substrate binding was examined by DS Visualizer ver . 20 . 1 . 0 . 19295 [ 44 ] , which provided all types of non - covalent interactions in two - dimensional ( 2D ) diagram . 4 . 10 . [SEP] B-Version [SEP] 4 . 10 [SEP] B-Citation [SEP] [ 44 ]","The involvement of active site residues in the substrate binding was examined by DS Visualizer ver . 20 . 1 . 0 . 19295 [ 44 ] , which provided all types of non - covalent interactions in two - dimensional ( 2D ) diagram . 4 . 10 . [SEP] B-Citation [SEP] [ 44 ] [SEP] B-Version [SEP] 4 . 10"
23,17,B-Version [SEP] 1 . 3 . 1,B-PlugIn [SEP] Autodock Vina,197,"Before molecular dynamics simulations , rutin and isoquercitrin substrates were docked into the AnRut crystal structure using Autodock Vina tool implemented in Chimera 1 . 3 . 1 ; the size of grid box was as follows:size_x=19.87A , size _ y = 22 . 97 A , and size _ z = 18 . 56 A .","Before molecular dynamics simulations , rutin and isoquercitrin substrates were docked into the AnRut crystal structure using Autodock Vina tool implemented in Chimera 1 . 3 . 1 ; the size of grid box was as follows:size_x=19.87A , size _ y = 22 . 97 A , and size _ z = 18 . 56 A . [SEP] B-Version [SEP] 1 . 3 . 1 [SEP] B-PlugIn [SEP] Autodock Vina","Before molecular dynamics simulations , rutin and isoquercitrin substrates were docked into the AnRut crystal structure using Autodock Vina tool implemented in Chimera 1 . 3 . 1 ; the size of grid box was as follows:size_x=19.87A , size _ y = 22 . 97 A , and size _ z = 18 . 56 A . [SEP] B-PlugIn [SEP] Autodock Vina [SEP] B-Version [SEP] 1 . 3 . 1"
23,22,B-Version [SEP] 1 . 3 . 1,B-Application [SEP] Chimera,197,"Before molecular dynamics simulations , rutin and isoquercitrin substrates were docked into the AnRut crystal structure using Autodock Vina tool implemented in Chimera 1 . 3 . 1 ; the size of grid box was as follows:size_x=19.87A , size _ y = 22 . 97 A , and size _ z = 18 . 56 A .","Before molecular dynamics simulations , rutin and isoquercitrin substrates were docked into the AnRut crystal structure using Autodock Vina tool implemented in Chimera 1 . 3 . 1 ; the size of grid box was as follows:size_x=19.87A , size _ y = 22 . 97 A , and size _ z = 18 . 56 A . [SEP] B-Version [SEP] 1 . 3 . 1 [SEP] B-Application [SEP] Chimera","Before molecular dynamics simulations , rutin and isoquercitrin substrates were docked into the AnRut crystal structure using Autodock Vina tool implemented in Chimera 1 . 3 . 1 ; the size of grid box was as follows:size_x=19.87A , size _ y = 22 . 97 A , and size _ z = 18 . 56 A . [SEP] B-Application [SEP] Chimera [SEP] B-Version [SEP] 1 . 3 . 1"
17,23,B-PlugIn [SEP] Autodock Vina,B-Version [SEP] 1 . 3 . 1,197,"Before molecular dynamics simulations , rutin and isoquercitrin substrates were docked into the AnRut crystal structure using Autodock Vina tool implemented in Chimera 1 . 3 . 1 ; the size of grid box was as follows:size_x=19.87A , size _ y = 22 . 97 A , and size _ z = 18 . 56 A .","Before molecular dynamics simulations , rutin and isoquercitrin substrates were docked into the AnRut crystal structure using Autodock Vina tool implemented in Chimera 1 . 3 . 1 ; the size of grid box was as follows:size_x=19.87A , size _ y = 22 . 97 A , and size _ z = 18 . 56 A . [SEP] B-PlugIn [SEP] Autodock Vina [SEP] B-Version [SEP] 1 . 3 . 1","Before molecular dynamics simulations , rutin and isoquercitrin substrates were docked into the AnRut crystal structure using Autodock Vina tool implemented in Chimera 1 . 3 . 1 ; the size of grid box was as follows:size_x=19.87A , size _ y = 22 . 97 A , and size _ z = 18 . 56 A . [SEP] B-Version [SEP] 1 . 3 . 1 [SEP] B-PlugIn [SEP] Autodock Vina"
17,22,B-PlugIn [SEP] Autodock Vina,B-Application [SEP] Chimera,197,"Before molecular dynamics simulations , rutin and isoquercitrin substrates were docked into the AnRut crystal structure using Autodock Vina tool implemented in Chimera 1 . 3 . 1 ; the size of grid box was as follows:size_x=19.87A , size _ y = 22 . 97 A , and size _ z = 18 . 56 A .","Before molecular dynamics simulations , rutin and isoquercitrin substrates were docked into the AnRut crystal structure using Autodock Vina tool implemented in Chimera 1 . 3 . 1 ; the size of grid box was as follows:size_x=19.87A , size _ y = 22 . 97 A , and size _ z = 18 . 56 A . [SEP] B-PlugIn [SEP] Autodock Vina [SEP] B-Application [SEP] Chimera","Before molecular dynamics simulations , rutin and isoquercitrin substrates were docked into the AnRut crystal structure using Autodock Vina tool implemented in Chimera 1 . 3 . 1 ; the size of grid box was as follows:size_x=19.87A , size _ y = 22 . 97 A , and size _ z = 18 . 56 A . [SEP] B-Application [SEP] Chimera [SEP] B-PlugIn [SEP] Autodock Vina"
22,23,B-Application [SEP] Chimera,B-Version [SEP] 1 . 3 . 1,197,"Before molecular dynamics simulations , rutin and isoquercitrin substrates were docked into the AnRut crystal structure using Autodock Vina tool implemented in Chimera 1 . 3 . 1 ; the size of grid box was as follows:size_x=19.87A , size _ y = 22 . 97 A , and size _ z = 18 . 56 A .","Before molecular dynamics simulations , rutin and isoquercitrin substrates were docked into the AnRut crystal structure using Autodock Vina tool implemented in Chimera 1 . 3 . 1 ; the size of grid box was as follows:size_x=19.87A , size _ y = 22 . 97 A , and size _ z = 18 . 56 A . [SEP] B-Application [SEP] Chimera [SEP] B-Version [SEP] 1 . 3 . 1","Before molecular dynamics simulations , rutin and isoquercitrin substrates were docked into the AnRut crystal structure using Autodock Vina tool implemented in Chimera 1 . 3 . 1 ; the size of grid box was as follows:size_x=19.87A , size _ y = 22 . 97 A , and size _ z = 18 . 56 A . [SEP] B-Version [SEP] 1 . 3 . 1 [SEP] B-Application [SEP] Chimera"
22,17,B-Application [SEP] Chimera,B-PlugIn [SEP] Autodock Vina,197,"Before molecular dynamics simulations , rutin and isoquercitrin substrates were docked into the AnRut crystal structure using Autodock Vina tool implemented in Chimera 1 . 3 . 1 ; the size of grid box was as follows:size_x=19.87A , size _ y = 22 . 97 A , and size _ z = 18 . 56 A .","Before molecular dynamics simulations , rutin and isoquercitrin substrates were docked into the AnRut crystal structure using Autodock Vina tool implemented in Chimera 1 . 3 . 1 ; the size of grid box was as follows:size_x=19.87A , size _ y = 22 . 97 A , and size _ z = 18 . 56 A . [SEP] B-Application [SEP] Chimera [SEP] B-PlugIn [SEP] Autodock Vina","Before molecular dynamics simulations , rutin and isoquercitrin substrates were docked into the AnRut crystal structure using Autodock Vina tool implemented in Chimera 1 . 3 . 1 ; the size of grid box was as follows:size_x=19.87A , size _ y = 22 . 97 A , and size _ z = 18 . 56 A . [SEP] B-PlugIn [SEP] Autodock Vina [SEP] B-Application [SEP] Chimera"
13,14,B-Release [SEP] 2016,B-Version [SEP] . 3,198,"Then , the protein molecule was consecutively processed using molecular dynamics software Gromacs 2016 . 3 [ 45 , 46 ] with OPLS - AA / L all - atom force field .","Then , the protein molecule was consecutively processed using molecular dynamics software Gromacs 2016 . 3 [ 45 , 46 ] with OPLS - AA / L all - atom force field . [SEP] B-Release [SEP] 2016 [SEP] B-Version [SEP] . 3","Then , the protein molecule was consecutively processed using molecular dynamics software Gromacs 2016 . 3 [ 45 , 46 ] with OPLS - AA / L all - atom force field . [SEP] B-Version [SEP] . 3 [SEP] B-Release [SEP] 2016"
13,16,B-Release [SEP] 2016,"B-Citation [SEP] [ 45 , 46 ]",198,"Then , the protein molecule was consecutively processed using molecular dynamics software Gromacs 2016 . 3 [ 45 , 46 ] with OPLS - AA / L all - atom force field .","Then , the protein molecule was consecutively processed using molecular dynamics software Gromacs 2016 . 3 [ 45 , 46 ] with OPLS - AA / L all - atom force field . [SEP] B-Release [SEP] 2016 [SEP] B-Citation [SEP] [ 45 , 46 ]","Then , the protein molecule was consecutively processed using molecular dynamics software Gromacs 2016 . 3 [ 45 , 46 ] with OPLS - AA / L all - atom force field . [SEP] B-Citation [SEP] [ 45 , 46 ] [SEP] B-Release [SEP] 2016"
13,12,B-Release [SEP] 2016,B-Application [SEP] Gromacs,198,"Then , the protein molecule was consecutively processed using molecular dynamics software Gromacs 2016 . 3 [ 45 , 46 ] with OPLS - AA / L all - atom force field .","Then , the protein molecule was consecutively processed using molecular dynamics software Gromacs 2016 . 3 [ 45 , 46 ] with OPLS - AA / L all - atom force field . [SEP] B-Release [SEP] 2016 [SEP] B-Application [SEP] Gromacs","Then , the protein molecule was consecutively processed using molecular dynamics software Gromacs 2016 . 3 [ 45 , 46 ] with OPLS - AA / L all - atom force field . [SEP] B-Application [SEP] Gromacs [SEP] B-Release [SEP] 2016"
14,13,B-Version [SEP] . 3,B-Release [SEP] 2016,198,"Then , the protein molecule was consecutively processed using molecular dynamics software Gromacs 2016 . 3 [ 45 , 46 ] with OPLS - AA / L all - atom force field .","Then , the protein molecule was consecutively processed using molecular dynamics software Gromacs 2016 . 3 [ 45 , 46 ] with OPLS - AA / L all - atom force field . [SEP] B-Version [SEP] . 3 [SEP] B-Release [SEP] 2016","Then , the protein molecule was consecutively processed using molecular dynamics software Gromacs 2016 . 3 [ 45 , 46 ] with OPLS - AA / L all - atom force field . [SEP] B-Release [SEP] 2016 [SEP] B-Version [SEP] . 3"
14,16,B-Version [SEP] . 3,"B-Citation [SEP] [ 45 , 46 ]",198,"Then , the protein molecule was consecutively processed using molecular dynamics software Gromacs 2016 . 3 [ 45 , 46 ] with OPLS - AA / L all - atom force field .","Then , the protein molecule was consecutively processed using molecular dynamics software Gromacs 2016 . 3 [ 45 , 46 ] with OPLS - AA / L all - atom force field . [SEP] B-Version [SEP] . 3 [SEP] B-Citation [SEP] [ 45 , 46 ]","Then , the protein molecule was consecutively processed using molecular dynamics software Gromacs 2016 . 3 [ 45 , 46 ] with OPLS - AA / L all - atom force field . [SEP] B-Citation [SEP] [ 45 , 46 ] [SEP] B-Version [SEP] . 3"
14,12,B-Version [SEP] . 3,B-Application [SEP] Gromacs,198,"Then , the protein molecule was consecutively processed using molecular dynamics software Gromacs 2016 . 3 [ 45 , 46 ] with OPLS - AA / L all - atom force field .","Then , the protein molecule was consecutively processed using molecular dynamics software Gromacs 2016 . 3 [ 45 , 46 ] with OPLS - AA / L all - atom force field . [SEP] B-Version [SEP] . 3 [SEP] B-Application [SEP] Gromacs","Then , the protein molecule was consecutively processed using molecular dynamics software Gromacs 2016 . 3 [ 45 , 46 ] with OPLS - AA / L all - atom force field . [SEP] B-Application [SEP] Gromacs [SEP] B-Version [SEP] . 3"
16,13,"B-Citation [SEP] [ 45 , 46 ]",B-Release [SEP] 2016,198,"Then , the protein molecule was consecutively processed using molecular dynamics software Gromacs 2016 . 3 [ 45 , 46 ] with OPLS - AA / L all - atom force field .","Then , the protein molecule was consecutively processed using molecular dynamics software Gromacs 2016 . 3 [ 45 , 46 ] with OPLS - AA / L all - atom force field . [SEP] B-Citation [SEP] [ 45 , 46 ] [SEP] B-Release [SEP] 2016","Then , the protein molecule was consecutively processed using molecular dynamics software Gromacs 2016 . 3 [ 45 , 46 ] with OPLS - AA / L all - atom force field . [SEP] B-Release [SEP] 2016 [SEP] B-Citation [SEP] [ 45 , 46 ]"
16,14,"B-Citation [SEP] [ 45 , 46 ]",B-Version [SEP] . 3,198,"Then , the protein molecule was consecutively processed using molecular dynamics software Gromacs 2016 . 3 [ 45 , 46 ] with OPLS - AA / L all - atom force field .","Then , the protein molecule was consecutively processed using molecular dynamics software Gromacs 2016 . 3 [ 45 , 46 ] with OPLS - AA / L all - atom force field . [SEP] B-Citation [SEP] [ 45 , 46 ] [SEP] B-Version [SEP] . 3","Then , the protein molecule was consecutively processed using molecular dynamics software Gromacs 2016 . 3 [ 45 , 46 ] with OPLS - AA / L all - atom force field . [SEP] B-Version [SEP] . 3 [SEP] B-Citation [SEP] [ 45 , 46 ]"
16,12,"B-Citation [SEP] [ 45 , 46 ]",B-Application [SEP] Gromacs,198,"Then , the protein molecule was consecutively processed using molecular dynamics software Gromacs 2016 . 3 [ 45 , 46 ] with OPLS - AA / L all - atom force field .","Then , the protein molecule was consecutively processed using molecular dynamics software Gromacs 2016 . 3 [ 45 , 46 ] with OPLS - AA / L all - atom force field . [SEP] B-Citation [SEP] [ 45 , 46 ] [SEP] B-Application [SEP] Gromacs","Then , the protein molecule was consecutively processed using molecular dynamics software Gromacs 2016 . 3 [ 45 , 46 ] with OPLS - AA / L all - atom force field . [SEP] B-Application [SEP] Gromacs [SEP] B-Citation [SEP] [ 45 , 46 ]"
12,13,B-Application [SEP] Gromacs,B-Release [SEP] 2016,198,"Then , the protein molecule was consecutively processed using molecular dynamics software Gromacs 2016 . 3 [ 45 , 46 ] with OPLS - AA / L all - atom force field .","Then , the protein molecule was consecutively processed using molecular dynamics software Gromacs 2016 . 3 [ 45 , 46 ] with OPLS - AA / L all - atom force field . [SEP] B-Application [SEP] Gromacs [SEP] B-Release [SEP] 2016","Then , the protein molecule was consecutively processed using molecular dynamics software Gromacs 2016 . 3 [ 45 , 46 ] with OPLS - AA / L all - atom force field . [SEP] B-Release [SEP] 2016 [SEP] B-Application [SEP] Gromacs"
12,14,B-Application [SEP] Gromacs,B-Version [SEP] . 3,198,"Then , the protein molecule was consecutively processed using molecular dynamics software Gromacs 2016 . 3 [ 45 , 46 ] with OPLS - AA / L all - atom force field .","Then , the protein molecule was consecutively processed using molecular dynamics software Gromacs 2016 . 3 [ 45 , 46 ] with OPLS - AA / L all - atom force field . [SEP] B-Application [SEP] Gromacs [SEP] B-Version [SEP] . 3","Then , the protein molecule was consecutively processed using molecular dynamics software Gromacs 2016 . 3 [ 45 , 46 ] with OPLS - AA / L all - atom force field . [SEP] B-Version [SEP] . 3 [SEP] B-Application [SEP] Gromacs"
12,16,B-Application [SEP] Gromacs,"B-Citation [SEP] [ 45 , 46 ]",198,"Then , the protein molecule was consecutively processed using molecular dynamics software Gromacs 2016 . 3 [ 45 , 46 ] with OPLS - AA / L all - atom force field .","Then , the protein molecule was consecutively processed using molecular dynamics software Gromacs 2016 . 3 [ 45 , 46 ] with OPLS - AA / L all - atom force field . [SEP] B-Application [SEP] Gromacs [SEP] B-Citation [SEP] [ 45 , 46 ]","Then , the protein molecule was consecutively processed using molecular dynamics software Gromacs 2016 . 3 [ 45 , 46 ] with OPLS - AA / L all - atom force field . [SEP] B-Citation [SEP] [ 45 , 46 ] [SEP] B-Application [SEP] Gromacs"
0,2,B-Application [SEP] Mutalyzer,B-URL [SEP] https://mutalyzer.nl/,199,"Mutalyzer ( https://mutalyzer.nl/ ) is a Web interface used for constructing , validating , and transforming sequence variant descriptions .","Mutalyzer ( https://mutalyzer.nl/ ) is a Web interface used for constructing , validating , and transforming sequence variant descriptions . [SEP] B-Application [SEP] Mutalyzer [SEP] B-URL [SEP] https://mutalyzer.nl/","Mutalyzer ( https://mutalyzer.nl/ ) is a Web interface used for constructing , validating , and transforming sequence variant descriptions . [SEP] B-URL [SEP] https://mutalyzer.nl/ [SEP] B-Application [SEP] Mutalyzer"
2,0,B-URL [SEP] https://mutalyzer.nl/,B-Application [SEP] Mutalyzer,199,"Mutalyzer ( https://mutalyzer.nl/ ) is a Web interface used for constructing , validating , and transforming sequence variant descriptions .","Mutalyzer ( https://mutalyzer.nl/ ) is a Web interface used for constructing , validating , and transforming sequence variant descriptions . [SEP] B-URL [SEP] https://mutalyzer.nl/ [SEP] B-Application [SEP] Mutalyzer","Mutalyzer ( https://mutalyzer.nl/ ) is a Web interface used for constructing , validating , and transforming sequence variant descriptions . [SEP] B-Application [SEP] Mutalyzer [SEP] B-URL [SEP] https://mutalyzer.nl/"
0,3,B-Application [SEP] Variant Validator,B-URL [SEP] https://variantvalidator.org/,200,Variant Validator ( https://variantvalidator.org/ ) is a web - based variant validation tool which provides an interface which allows the validation of genomic variations published in scientific literature or databases .,Variant Validator ( https://variantvalidator.org/ ) is a web - based variant validation tool which provides an interface which allows the validation of genomic variations published in scientific literature or databases . [SEP] B-Application [SEP] Variant Validator [SEP] B-URL [SEP] https://variantvalidator.org/,Variant Validator ( https://variantvalidator.org/ ) is a web - based variant validation tool which provides an interface which allows the validation of genomic variations published in scientific literature or databases . [SEP] B-URL [SEP] https://variantvalidator.org/ [SEP] B-Application [SEP] Variant Validator
3,0,B-URL [SEP] https://variantvalidator.org/,B-Application [SEP] Variant Validator,200,Variant Validator ( https://variantvalidator.org/ ) is a web - based variant validation tool which provides an interface which allows the validation of genomic variations published in scientific literature or databases .,Variant Validator ( https://variantvalidator.org/ ) is a web - based variant validation tool which provides an interface which allows the validation of genomic variations published in scientific literature or databases . [SEP] B-URL [SEP] https://variantvalidator.org/ [SEP] B-Application [SEP] Variant Validator,Variant Validator ( https://variantvalidator.org/ ) is a web - based variant validation tool which provides an interface which allows the validation of genomic variations published in scientific literature or databases . [SEP] B-Application [SEP] Variant Validator [SEP] B-URL [SEP] https://variantvalidator.org/
65,56,B-Application [SEP] iMutant,B-Citation [SEP] [ 16 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] iMutant [SEP] B-Citation [SEP] [ 16 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Application [SEP] iMutant"
65,60,B-Application [SEP] iMutant,B-Application [SEP] SDM,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] iMutant [SEP] B-Application [SEP] SDM","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] SDM [SEP] B-Application [SEP] iMutant"
65,61,B-Application [SEP] iMutant,B-Citation [SEP] [ 17 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] iMutant [SEP] B-Citation [SEP] [ 17 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Application [SEP] iMutant"
65,36,B-Application [SEP] iMutant,B-Version [SEP] 3,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] iMutant [SEP] B-Version [SEP] 3","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 3 [SEP] B-Application [SEP] iMutant"
65,69,B-Application [SEP] iMutant,B-Citation [SEP] [ 18 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] iMutant [SEP] B-Citation [SEP] [ 18 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Application [SEP] iMutant"
65,73,B-Application [SEP] iMutant,B-Application [SEP] POPMUSIC,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] iMutant [SEP] B-Application [SEP] POPMUSIC","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] POPMUSIC [SEP] B-Application [SEP] iMutant"
65,74,B-Application [SEP] iMutant,B-Citation [SEP] [ 19 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] iMutant [SEP] B-Citation [SEP] [ 19 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Application [SEP] iMutant"
65,55,B-Application [SEP] iMutant,B-Application [SEP] mCSM,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] iMutant [SEP] B-Application [SEP] mCSM","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] mCSM [SEP] B-Application [SEP] iMutant"
65,66,B-Application [SEP] iMutant,B-Version [SEP] 2 . 0,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] iMutant [SEP] B-Version [SEP] 2 . 0","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Application [SEP] iMutant"
65,51,B-Application [SEP] iMutant,B-Citation [SEP] [ 15 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] iMutant [SEP] B-Citation [SEP] [ 15 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Application [SEP] iMutant"
65,29,B-Application [SEP] iMutant,B-Application [SEP] OPLS,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] iMutant [SEP] B-Application [SEP] OPLS","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Application [SEP] iMutant"
65,42,B-Application [SEP] iMutant,B-Citation [SEP] [ 14 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] iMutant [SEP] B-Citation [SEP] [ 14 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Application [SEP] iMutant"
65,50,B-Application [SEP] iMutant,B-Application [SEP] CUPSAT,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] iMutant [SEP] B-Application [SEP] CUPSAT","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] CUPSAT [SEP] B-Application [SEP] iMutant"
65,16,B-Application [SEP] iMutant,B-Citation [SEP] [ 11 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] iMutant [SEP] B-Citation [SEP] [ 11 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Application [SEP] iMutant"
65,20,B-Application [SEP] iMutant,B-Application [SEP] Schrodinger,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] iMutant [SEP] B-Application [SEP] Schrodinger","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] Schrodinger [SEP] B-Application [SEP] iMutant"
65,30,B-Application [SEP] iMutant,B-Release [SEP] 2005,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] iMutant [SEP] B-Release [SEP] 2005","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Release [SEP] 2005 [SEP] B-Application [SEP] iMutant"
65,15,B-Application [SEP] iMutant,B-Application [SEP] FoldX,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] iMutant [SEP] B-Application [SEP] FoldX","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] FoldX [SEP] B-Application [SEP] iMutant"
65,35,B-Application [SEP] iMutant,B-Application [SEP] OPLS,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] iMutant [SEP] B-Application [SEP] OPLS","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Application [SEP] iMutant"
65,37,B-Application [SEP] iMutant,B-Citation [SEP] [ 13 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] iMutant [SEP] B-Citation [SEP] [ 13 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Application [SEP] iMutant"
65,41,B-Application [SEP] iMutant,B-Application [SEP] MOE,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] iMutant [SEP] B-Application [SEP] MOE","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] MOE [SEP] B-Application [SEP] iMutant"
65,31,B-Application [SEP] iMutant,B-Citation [SEP] [ 12 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] iMutant [SEP] B-Citation [SEP] [ 12 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Application [SEP] iMutant"
56,65,B-Citation [SEP] [ 16 ],B-Application [SEP] iMutant,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Application [SEP] iMutant","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] iMutant [SEP] B-Citation [SEP] [ 16 ]"
56,60,B-Citation [SEP] [ 16 ],B-Application [SEP] SDM,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Application [SEP] SDM","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] SDM [SEP] B-Citation [SEP] [ 16 ]"
56,61,B-Citation [SEP] [ 16 ],B-Citation [SEP] [ 17 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Citation [SEP] [ 17 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Citation [SEP] [ 16 ]"
56,36,B-Citation [SEP] [ 16 ],B-Version [SEP] 3,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Version [SEP] 3","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 3 [SEP] B-Citation [SEP] [ 16 ]"
56,69,B-Citation [SEP] [ 16 ],B-Citation [SEP] [ 18 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Citation [SEP] [ 18 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Citation [SEP] [ 16 ]"
56,73,B-Citation [SEP] [ 16 ],B-Application [SEP] POPMUSIC,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Application [SEP] POPMUSIC","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] POPMUSIC [SEP] B-Citation [SEP] [ 16 ]"
56,74,B-Citation [SEP] [ 16 ],B-Citation [SEP] [ 19 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Citation [SEP] [ 19 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Citation [SEP] [ 16 ]"
56,55,B-Citation [SEP] [ 16 ],B-Application [SEP] mCSM,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Application [SEP] mCSM","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] mCSM [SEP] B-Citation [SEP] [ 16 ]"
56,66,B-Citation [SEP] [ 16 ],B-Version [SEP] 2 . 0,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Version [SEP] 2 . 0","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Citation [SEP] [ 16 ]"
56,51,B-Citation [SEP] [ 16 ],B-Citation [SEP] [ 15 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Citation [SEP] [ 15 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Citation [SEP] [ 16 ]"
56,29,B-Citation [SEP] [ 16 ],B-Application [SEP] OPLS,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Application [SEP] OPLS","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Citation [SEP] [ 16 ]"
56,42,B-Citation [SEP] [ 16 ],B-Citation [SEP] [ 14 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Citation [SEP] [ 14 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Citation [SEP] [ 16 ]"
56,50,B-Citation [SEP] [ 16 ],B-Application [SEP] CUPSAT,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Application [SEP] CUPSAT","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] CUPSAT [SEP] B-Citation [SEP] [ 16 ]"
56,16,B-Citation [SEP] [ 16 ],B-Citation [SEP] [ 11 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Citation [SEP] [ 11 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Citation [SEP] [ 16 ]"
56,20,B-Citation [SEP] [ 16 ],B-Application [SEP] Schrodinger,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Application [SEP] Schrodinger","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] Schrodinger [SEP] B-Citation [SEP] [ 16 ]"
56,30,B-Citation [SEP] [ 16 ],B-Release [SEP] 2005,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Release [SEP] 2005","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Release [SEP] 2005 [SEP] B-Citation [SEP] [ 16 ]"
56,15,B-Citation [SEP] [ 16 ],B-Application [SEP] FoldX,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Application [SEP] FoldX","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] FoldX [SEP] B-Citation [SEP] [ 16 ]"
56,35,B-Citation [SEP] [ 16 ],B-Application [SEP] OPLS,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Application [SEP] OPLS","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Citation [SEP] [ 16 ]"
56,37,B-Citation [SEP] [ 16 ],B-Citation [SEP] [ 13 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Citation [SEP] [ 13 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Citation [SEP] [ 16 ]"
56,41,B-Citation [SEP] [ 16 ],B-Application [SEP] MOE,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Application [SEP] MOE","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] MOE [SEP] B-Citation [SEP] [ 16 ]"
56,31,B-Citation [SEP] [ 16 ],B-Citation [SEP] [ 12 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Citation [SEP] [ 12 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Citation [SEP] [ 16 ]"
60,65,B-Application [SEP] SDM,B-Application [SEP] iMutant,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] SDM [SEP] B-Application [SEP] iMutant","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] iMutant [SEP] B-Application [SEP] SDM"
60,56,B-Application [SEP] SDM,B-Citation [SEP] [ 16 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] SDM [SEP] B-Citation [SEP] [ 16 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Application [SEP] SDM"
60,61,B-Application [SEP] SDM,B-Citation [SEP] [ 17 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] SDM [SEP] B-Citation [SEP] [ 17 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Application [SEP] SDM"
60,36,B-Application [SEP] SDM,B-Version [SEP] 3,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] SDM [SEP] B-Version [SEP] 3","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 3 [SEP] B-Application [SEP] SDM"
60,69,B-Application [SEP] SDM,B-Citation [SEP] [ 18 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] SDM [SEP] B-Citation [SEP] [ 18 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Application [SEP] SDM"
60,73,B-Application [SEP] SDM,B-Application [SEP] POPMUSIC,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] SDM [SEP] B-Application [SEP] POPMUSIC","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] POPMUSIC [SEP] B-Application [SEP] SDM"
60,74,B-Application [SEP] SDM,B-Citation [SEP] [ 19 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] SDM [SEP] B-Citation [SEP] [ 19 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Application [SEP] SDM"
60,55,B-Application [SEP] SDM,B-Application [SEP] mCSM,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] SDM [SEP] B-Application [SEP] mCSM","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] mCSM [SEP] B-Application [SEP] SDM"
60,66,B-Application [SEP] SDM,B-Version [SEP] 2 . 0,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] SDM [SEP] B-Version [SEP] 2 . 0","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Application [SEP] SDM"
60,51,B-Application [SEP] SDM,B-Citation [SEP] [ 15 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] SDM [SEP] B-Citation [SEP] [ 15 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Application [SEP] SDM"
60,29,B-Application [SEP] SDM,B-Application [SEP] OPLS,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] SDM [SEP] B-Application [SEP] OPLS","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Application [SEP] SDM"
60,42,B-Application [SEP] SDM,B-Citation [SEP] [ 14 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] SDM [SEP] B-Citation [SEP] [ 14 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Application [SEP] SDM"
60,50,B-Application [SEP] SDM,B-Application [SEP] CUPSAT,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] SDM [SEP] B-Application [SEP] CUPSAT","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] CUPSAT [SEP] B-Application [SEP] SDM"
60,16,B-Application [SEP] SDM,B-Citation [SEP] [ 11 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] SDM [SEP] B-Citation [SEP] [ 11 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Application [SEP] SDM"
60,20,B-Application [SEP] SDM,B-Application [SEP] Schrodinger,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] SDM [SEP] B-Application [SEP] Schrodinger","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] Schrodinger [SEP] B-Application [SEP] SDM"
60,30,B-Application [SEP] SDM,B-Release [SEP] 2005,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] SDM [SEP] B-Release [SEP] 2005","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Release [SEP] 2005 [SEP] B-Application [SEP] SDM"
60,15,B-Application [SEP] SDM,B-Application [SEP] FoldX,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] SDM [SEP] B-Application [SEP] FoldX","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] FoldX [SEP] B-Application [SEP] SDM"
60,35,B-Application [SEP] SDM,B-Application [SEP] OPLS,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] SDM [SEP] B-Application [SEP] OPLS","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Application [SEP] SDM"
60,37,B-Application [SEP] SDM,B-Citation [SEP] [ 13 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] SDM [SEP] B-Citation [SEP] [ 13 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Application [SEP] SDM"
60,41,B-Application [SEP] SDM,B-Application [SEP] MOE,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] SDM [SEP] B-Application [SEP] MOE","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] MOE [SEP] B-Application [SEP] SDM"
60,31,B-Application [SEP] SDM,B-Citation [SEP] [ 12 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] SDM [SEP] B-Citation [SEP] [ 12 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Application [SEP] SDM"
61,65,B-Citation [SEP] [ 17 ],B-Application [SEP] iMutant,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Application [SEP] iMutant","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] iMutant [SEP] B-Citation [SEP] [ 17 ]"
61,56,B-Citation [SEP] [ 17 ],B-Citation [SEP] [ 16 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Citation [SEP] [ 16 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Citation [SEP] [ 17 ]"
61,60,B-Citation [SEP] [ 17 ],B-Application [SEP] SDM,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Application [SEP] SDM","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] SDM [SEP] B-Citation [SEP] [ 17 ]"
61,36,B-Citation [SEP] [ 17 ],B-Version [SEP] 3,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Version [SEP] 3","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 3 [SEP] B-Citation [SEP] [ 17 ]"
61,69,B-Citation [SEP] [ 17 ],B-Citation [SEP] [ 18 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Citation [SEP] [ 18 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Citation [SEP] [ 17 ]"
61,73,B-Citation [SEP] [ 17 ],B-Application [SEP] POPMUSIC,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Application [SEP] POPMUSIC","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] POPMUSIC [SEP] B-Citation [SEP] [ 17 ]"
61,74,B-Citation [SEP] [ 17 ],B-Citation [SEP] [ 19 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Citation [SEP] [ 19 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Citation [SEP] [ 17 ]"
61,55,B-Citation [SEP] [ 17 ],B-Application [SEP] mCSM,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Application [SEP] mCSM","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] mCSM [SEP] B-Citation [SEP] [ 17 ]"
61,66,B-Citation [SEP] [ 17 ],B-Version [SEP] 2 . 0,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Version [SEP] 2 . 0","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Citation [SEP] [ 17 ]"
61,51,B-Citation [SEP] [ 17 ],B-Citation [SEP] [ 15 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Citation [SEP] [ 15 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Citation [SEP] [ 17 ]"
61,29,B-Citation [SEP] [ 17 ],B-Application [SEP] OPLS,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Application [SEP] OPLS","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Citation [SEP] [ 17 ]"
61,42,B-Citation [SEP] [ 17 ],B-Citation [SEP] [ 14 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Citation [SEP] [ 14 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Citation [SEP] [ 17 ]"
61,50,B-Citation [SEP] [ 17 ],B-Application [SEP] CUPSAT,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Application [SEP] CUPSAT","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] CUPSAT [SEP] B-Citation [SEP] [ 17 ]"
61,16,B-Citation [SEP] [ 17 ],B-Citation [SEP] [ 11 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Citation [SEP] [ 11 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Citation [SEP] [ 17 ]"
61,20,B-Citation [SEP] [ 17 ],B-Application [SEP] Schrodinger,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Application [SEP] Schrodinger","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] Schrodinger [SEP] B-Citation [SEP] [ 17 ]"
61,30,B-Citation [SEP] [ 17 ],B-Release [SEP] 2005,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Release [SEP] 2005","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Release [SEP] 2005 [SEP] B-Citation [SEP] [ 17 ]"
61,15,B-Citation [SEP] [ 17 ],B-Application [SEP] FoldX,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Application [SEP] FoldX","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] FoldX [SEP] B-Citation [SEP] [ 17 ]"
61,35,B-Citation [SEP] [ 17 ],B-Application [SEP] OPLS,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Application [SEP] OPLS","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Citation [SEP] [ 17 ]"
61,37,B-Citation [SEP] [ 17 ],B-Citation [SEP] [ 13 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Citation [SEP] [ 13 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Citation [SEP] [ 17 ]"
61,41,B-Citation [SEP] [ 17 ],B-Application [SEP] MOE,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Application [SEP] MOE","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] MOE [SEP] B-Citation [SEP] [ 17 ]"
61,31,B-Citation [SEP] [ 17 ],B-Citation [SEP] [ 12 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Citation [SEP] [ 12 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Citation [SEP] [ 17 ]"
36,65,B-Version [SEP] 3,B-Application [SEP] iMutant,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 3 [SEP] B-Application [SEP] iMutant","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] iMutant [SEP] B-Version [SEP] 3"
36,56,B-Version [SEP] 3,B-Citation [SEP] [ 16 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 3 [SEP] B-Citation [SEP] [ 16 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Version [SEP] 3"
36,60,B-Version [SEP] 3,B-Application [SEP] SDM,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 3 [SEP] B-Application [SEP] SDM","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] SDM [SEP] B-Version [SEP] 3"
36,61,B-Version [SEP] 3,B-Citation [SEP] [ 17 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 3 [SEP] B-Citation [SEP] [ 17 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Version [SEP] 3"
36,69,B-Version [SEP] 3,B-Citation [SEP] [ 18 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 3 [SEP] B-Citation [SEP] [ 18 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Version [SEP] 3"
36,73,B-Version [SEP] 3,B-Application [SEP] POPMUSIC,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 3 [SEP] B-Application [SEP] POPMUSIC","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] POPMUSIC [SEP] B-Version [SEP] 3"
36,74,B-Version [SEP] 3,B-Citation [SEP] [ 19 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 3 [SEP] B-Citation [SEP] [ 19 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Version [SEP] 3"
36,55,B-Version [SEP] 3,B-Application [SEP] mCSM,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 3 [SEP] B-Application [SEP] mCSM","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] mCSM [SEP] B-Version [SEP] 3"
36,66,B-Version [SEP] 3,B-Version [SEP] 2 . 0,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 3 [SEP] B-Version [SEP] 2 . 0","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Version [SEP] 3"
36,51,B-Version [SEP] 3,B-Citation [SEP] [ 15 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 3 [SEP] B-Citation [SEP] [ 15 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Version [SEP] 3"
36,29,B-Version [SEP] 3,B-Application [SEP] OPLS,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 3 [SEP] B-Application [SEP] OPLS","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Version [SEP] 3"
36,42,B-Version [SEP] 3,B-Citation [SEP] [ 14 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 3 [SEP] B-Citation [SEP] [ 14 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Version [SEP] 3"
36,50,B-Version [SEP] 3,B-Application [SEP] CUPSAT,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 3 [SEP] B-Application [SEP] CUPSAT","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] CUPSAT [SEP] B-Version [SEP] 3"
36,16,B-Version [SEP] 3,B-Citation [SEP] [ 11 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 3 [SEP] B-Citation [SEP] [ 11 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Version [SEP] 3"
36,20,B-Version [SEP] 3,B-Application [SEP] Schrodinger,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 3 [SEP] B-Application [SEP] Schrodinger","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] Schrodinger [SEP] B-Version [SEP] 3"
36,30,B-Version [SEP] 3,B-Release [SEP] 2005,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 3 [SEP] B-Release [SEP] 2005","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Release [SEP] 2005 [SEP] B-Version [SEP] 3"
36,15,B-Version [SEP] 3,B-Application [SEP] FoldX,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 3 [SEP] B-Application [SEP] FoldX","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] FoldX [SEP] B-Version [SEP] 3"
36,35,B-Version [SEP] 3,B-Application [SEP] OPLS,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 3 [SEP] B-Application [SEP] OPLS","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Version [SEP] 3"
36,37,B-Version [SEP] 3,B-Citation [SEP] [ 13 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 3 [SEP] B-Citation [SEP] [ 13 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Version [SEP] 3"
36,41,B-Version [SEP] 3,B-Application [SEP] MOE,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 3 [SEP] B-Application [SEP] MOE","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] MOE [SEP] B-Version [SEP] 3"
36,31,B-Version [SEP] 3,B-Citation [SEP] [ 12 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 3 [SEP] B-Citation [SEP] [ 12 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Version [SEP] 3"
69,65,B-Citation [SEP] [ 18 ],B-Application [SEP] iMutant,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Application [SEP] iMutant","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] iMutant [SEP] B-Citation [SEP] [ 18 ]"
69,56,B-Citation [SEP] [ 18 ],B-Citation [SEP] [ 16 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Citation [SEP] [ 16 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Citation [SEP] [ 18 ]"
69,60,B-Citation [SEP] [ 18 ],B-Application [SEP] SDM,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Application [SEP] SDM","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] SDM [SEP] B-Citation [SEP] [ 18 ]"
69,61,B-Citation [SEP] [ 18 ],B-Citation [SEP] [ 17 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Citation [SEP] [ 17 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Citation [SEP] [ 18 ]"
69,36,B-Citation [SEP] [ 18 ],B-Version [SEP] 3,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Version [SEP] 3","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 3 [SEP] B-Citation [SEP] [ 18 ]"
69,73,B-Citation [SEP] [ 18 ],B-Application [SEP] POPMUSIC,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Application [SEP] POPMUSIC","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] POPMUSIC [SEP] B-Citation [SEP] [ 18 ]"
69,74,B-Citation [SEP] [ 18 ],B-Citation [SEP] [ 19 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Citation [SEP] [ 19 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Citation [SEP] [ 18 ]"
69,55,B-Citation [SEP] [ 18 ],B-Application [SEP] mCSM,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Application [SEP] mCSM","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] mCSM [SEP] B-Citation [SEP] [ 18 ]"
69,66,B-Citation [SEP] [ 18 ],B-Version [SEP] 2 . 0,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Version [SEP] 2 . 0","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Citation [SEP] [ 18 ]"
69,51,B-Citation [SEP] [ 18 ],B-Citation [SEP] [ 15 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Citation [SEP] [ 15 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Citation [SEP] [ 18 ]"
69,29,B-Citation [SEP] [ 18 ],B-Application [SEP] OPLS,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Application [SEP] OPLS","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Citation [SEP] [ 18 ]"
69,42,B-Citation [SEP] [ 18 ],B-Citation [SEP] [ 14 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Citation [SEP] [ 14 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Citation [SEP] [ 18 ]"
69,50,B-Citation [SEP] [ 18 ],B-Application [SEP] CUPSAT,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Application [SEP] CUPSAT","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] CUPSAT [SEP] B-Citation [SEP] [ 18 ]"
69,16,B-Citation [SEP] [ 18 ],B-Citation [SEP] [ 11 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Citation [SEP] [ 11 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Citation [SEP] [ 18 ]"
69,20,B-Citation [SEP] [ 18 ],B-Application [SEP] Schrodinger,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Application [SEP] Schrodinger","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] Schrodinger [SEP] B-Citation [SEP] [ 18 ]"
69,30,B-Citation [SEP] [ 18 ],B-Release [SEP] 2005,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Release [SEP] 2005","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Release [SEP] 2005 [SEP] B-Citation [SEP] [ 18 ]"
69,15,B-Citation [SEP] [ 18 ],B-Application [SEP] FoldX,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Application [SEP] FoldX","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] FoldX [SEP] B-Citation [SEP] [ 18 ]"
69,35,B-Citation [SEP] [ 18 ],B-Application [SEP] OPLS,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Application [SEP] OPLS","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Citation [SEP] [ 18 ]"
69,37,B-Citation [SEP] [ 18 ],B-Citation [SEP] [ 13 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Citation [SEP] [ 13 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Citation [SEP] [ 18 ]"
69,41,B-Citation [SEP] [ 18 ],B-Application [SEP] MOE,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Application [SEP] MOE","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] MOE [SEP] B-Citation [SEP] [ 18 ]"
69,31,B-Citation [SEP] [ 18 ],B-Citation [SEP] [ 12 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Citation [SEP] [ 12 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Citation [SEP] [ 18 ]"
73,65,B-Application [SEP] POPMUSIC,B-Application [SEP] iMutant,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] POPMUSIC [SEP] B-Application [SEP] iMutant","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] iMutant [SEP] B-Application [SEP] POPMUSIC"
73,56,B-Application [SEP] POPMUSIC,B-Citation [SEP] [ 16 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] POPMUSIC [SEP] B-Citation [SEP] [ 16 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Application [SEP] POPMUSIC"
73,60,B-Application [SEP] POPMUSIC,B-Application [SEP] SDM,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] POPMUSIC [SEP] B-Application [SEP] SDM","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] SDM [SEP] B-Application [SEP] POPMUSIC"
73,61,B-Application [SEP] POPMUSIC,B-Citation [SEP] [ 17 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] POPMUSIC [SEP] B-Citation [SEP] [ 17 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Application [SEP] POPMUSIC"
73,36,B-Application [SEP] POPMUSIC,B-Version [SEP] 3,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] POPMUSIC [SEP] B-Version [SEP] 3","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 3 [SEP] B-Application [SEP] POPMUSIC"
73,69,B-Application [SEP] POPMUSIC,B-Citation [SEP] [ 18 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] POPMUSIC [SEP] B-Citation [SEP] [ 18 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Application [SEP] POPMUSIC"
73,74,B-Application [SEP] POPMUSIC,B-Citation [SEP] [ 19 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] POPMUSIC [SEP] B-Citation [SEP] [ 19 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Application [SEP] POPMUSIC"
73,55,B-Application [SEP] POPMUSIC,B-Application [SEP] mCSM,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] POPMUSIC [SEP] B-Application [SEP] mCSM","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] mCSM [SEP] B-Application [SEP] POPMUSIC"
73,66,B-Application [SEP] POPMUSIC,B-Version [SEP] 2 . 0,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] POPMUSIC [SEP] B-Version [SEP] 2 . 0","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Application [SEP] POPMUSIC"
73,51,B-Application [SEP] POPMUSIC,B-Citation [SEP] [ 15 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] POPMUSIC [SEP] B-Citation [SEP] [ 15 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Application [SEP] POPMUSIC"
73,29,B-Application [SEP] POPMUSIC,B-Application [SEP] OPLS,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] POPMUSIC [SEP] B-Application [SEP] OPLS","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Application [SEP] POPMUSIC"
73,42,B-Application [SEP] POPMUSIC,B-Citation [SEP] [ 14 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] POPMUSIC [SEP] B-Citation [SEP] [ 14 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Application [SEP] POPMUSIC"
73,50,B-Application [SEP] POPMUSIC,B-Application [SEP] CUPSAT,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] POPMUSIC [SEP] B-Application [SEP] CUPSAT","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] CUPSAT [SEP] B-Application [SEP] POPMUSIC"
73,16,B-Application [SEP] POPMUSIC,B-Citation [SEP] [ 11 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] POPMUSIC [SEP] B-Citation [SEP] [ 11 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Application [SEP] POPMUSIC"
73,20,B-Application [SEP] POPMUSIC,B-Application [SEP] Schrodinger,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] POPMUSIC [SEP] B-Application [SEP] Schrodinger","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] Schrodinger [SEP] B-Application [SEP] POPMUSIC"
73,30,B-Application [SEP] POPMUSIC,B-Release [SEP] 2005,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] POPMUSIC [SEP] B-Release [SEP] 2005","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Release [SEP] 2005 [SEP] B-Application [SEP] POPMUSIC"
73,15,B-Application [SEP] POPMUSIC,B-Application [SEP] FoldX,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] POPMUSIC [SEP] B-Application [SEP] FoldX","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] FoldX [SEP] B-Application [SEP] POPMUSIC"
73,35,B-Application [SEP] POPMUSIC,B-Application [SEP] OPLS,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] POPMUSIC [SEP] B-Application [SEP] OPLS","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Application [SEP] POPMUSIC"
73,37,B-Application [SEP] POPMUSIC,B-Citation [SEP] [ 13 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] POPMUSIC [SEP] B-Citation [SEP] [ 13 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Application [SEP] POPMUSIC"
73,41,B-Application [SEP] POPMUSIC,B-Application [SEP] MOE,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] POPMUSIC [SEP] B-Application [SEP] MOE","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] MOE [SEP] B-Application [SEP] POPMUSIC"
73,31,B-Application [SEP] POPMUSIC,B-Citation [SEP] [ 12 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] POPMUSIC [SEP] B-Citation [SEP] [ 12 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Application [SEP] POPMUSIC"
74,65,B-Citation [SEP] [ 19 ],B-Application [SEP] iMutant,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Application [SEP] iMutant","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] iMutant [SEP] B-Citation [SEP] [ 19 ]"
74,56,B-Citation [SEP] [ 19 ],B-Citation [SEP] [ 16 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Citation [SEP] [ 16 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Citation [SEP] [ 19 ]"
74,60,B-Citation [SEP] [ 19 ],B-Application [SEP] SDM,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Application [SEP] SDM","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] SDM [SEP] B-Citation [SEP] [ 19 ]"
74,61,B-Citation [SEP] [ 19 ],B-Citation [SEP] [ 17 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Citation [SEP] [ 17 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Citation [SEP] [ 19 ]"
74,36,B-Citation [SEP] [ 19 ],B-Version [SEP] 3,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Version [SEP] 3","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 3 [SEP] B-Citation [SEP] [ 19 ]"
74,69,B-Citation [SEP] [ 19 ],B-Citation [SEP] [ 18 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Citation [SEP] [ 18 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Citation [SEP] [ 19 ]"
74,73,B-Citation [SEP] [ 19 ],B-Application [SEP] POPMUSIC,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Application [SEP] POPMUSIC","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] POPMUSIC [SEP] B-Citation [SEP] [ 19 ]"
74,55,B-Citation [SEP] [ 19 ],B-Application [SEP] mCSM,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Application [SEP] mCSM","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] mCSM [SEP] B-Citation [SEP] [ 19 ]"
74,66,B-Citation [SEP] [ 19 ],B-Version [SEP] 2 . 0,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Version [SEP] 2 . 0","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Citation [SEP] [ 19 ]"
74,51,B-Citation [SEP] [ 19 ],B-Citation [SEP] [ 15 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Citation [SEP] [ 15 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Citation [SEP] [ 19 ]"
74,29,B-Citation [SEP] [ 19 ],B-Application [SEP] OPLS,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Application [SEP] OPLS","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Citation [SEP] [ 19 ]"
74,42,B-Citation [SEP] [ 19 ],B-Citation [SEP] [ 14 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Citation [SEP] [ 14 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Citation [SEP] [ 19 ]"
74,50,B-Citation [SEP] [ 19 ],B-Application [SEP] CUPSAT,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Application [SEP] CUPSAT","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] CUPSAT [SEP] B-Citation [SEP] [ 19 ]"
74,16,B-Citation [SEP] [ 19 ],B-Citation [SEP] [ 11 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Citation [SEP] [ 11 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Citation [SEP] [ 19 ]"
74,20,B-Citation [SEP] [ 19 ],B-Application [SEP] Schrodinger,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Application [SEP] Schrodinger","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] Schrodinger [SEP] B-Citation [SEP] [ 19 ]"
74,30,B-Citation [SEP] [ 19 ],B-Release [SEP] 2005,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Release [SEP] 2005","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Release [SEP] 2005 [SEP] B-Citation [SEP] [ 19 ]"
74,15,B-Citation [SEP] [ 19 ],B-Application [SEP] FoldX,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Application [SEP] FoldX","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] FoldX [SEP] B-Citation [SEP] [ 19 ]"
74,35,B-Citation [SEP] [ 19 ],B-Application [SEP] OPLS,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Application [SEP] OPLS","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Citation [SEP] [ 19 ]"
74,37,B-Citation [SEP] [ 19 ],B-Citation [SEP] [ 13 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Citation [SEP] [ 13 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Citation [SEP] [ 19 ]"
74,41,B-Citation [SEP] [ 19 ],B-Application [SEP] MOE,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Application [SEP] MOE","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] MOE [SEP] B-Citation [SEP] [ 19 ]"
74,31,B-Citation [SEP] [ 19 ],B-Citation [SEP] [ 12 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Citation [SEP] [ 12 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Citation [SEP] [ 19 ]"
55,65,B-Application [SEP] mCSM,B-Application [SEP] iMutant,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] mCSM [SEP] B-Application [SEP] iMutant","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] iMutant [SEP] B-Application [SEP] mCSM"
55,56,B-Application [SEP] mCSM,B-Citation [SEP] [ 16 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] mCSM [SEP] B-Citation [SEP] [ 16 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Application [SEP] mCSM"
55,60,B-Application [SEP] mCSM,B-Application [SEP] SDM,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] mCSM [SEP] B-Application [SEP] SDM","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] SDM [SEP] B-Application [SEP] mCSM"
55,61,B-Application [SEP] mCSM,B-Citation [SEP] [ 17 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] mCSM [SEP] B-Citation [SEP] [ 17 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Application [SEP] mCSM"
55,36,B-Application [SEP] mCSM,B-Version [SEP] 3,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] mCSM [SEP] B-Version [SEP] 3","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 3 [SEP] B-Application [SEP] mCSM"
55,69,B-Application [SEP] mCSM,B-Citation [SEP] [ 18 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] mCSM [SEP] B-Citation [SEP] [ 18 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Application [SEP] mCSM"
55,73,B-Application [SEP] mCSM,B-Application [SEP] POPMUSIC,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] mCSM [SEP] B-Application [SEP] POPMUSIC","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] POPMUSIC [SEP] B-Application [SEP] mCSM"
55,74,B-Application [SEP] mCSM,B-Citation [SEP] [ 19 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] mCSM [SEP] B-Citation [SEP] [ 19 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Application [SEP] mCSM"
55,66,B-Application [SEP] mCSM,B-Version [SEP] 2 . 0,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] mCSM [SEP] B-Version [SEP] 2 . 0","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Application [SEP] mCSM"
55,51,B-Application [SEP] mCSM,B-Citation [SEP] [ 15 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] mCSM [SEP] B-Citation [SEP] [ 15 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Application [SEP] mCSM"
55,29,B-Application [SEP] mCSM,B-Application [SEP] OPLS,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] mCSM [SEP] B-Application [SEP] OPLS","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Application [SEP] mCSM"
55,42,B-Application [SEP] mCSM,B-Citation [SEP] [ 14 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] mCSM [SEP] B-Citation [SEP] [ 14 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Application [SEP] mCSM"
55,50,B-Application [SEP] mCSM,B-Application [SEP] CUPSAT,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] mCSM [SEP] B-Application [SEP] CUPSAT","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] CUPSAT [SEP] B-Application [SEP] mCSM"
55,16,B-Application [SEP] mCSM,B-Citation [SEP] [ 11 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] mCSM [SEP] B-Citation [SEP] [ 11 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Application [SEP] mCSM"
55,20,B-Application [SEP] mCSM,B-Application [SEP] Schrodinger,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] mCSM [SEP] B-Application [SEP] Schrodinger","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] Schrodinger [SEP] B-Application [SEP] mCSM"
55,30,B-Application [SEP] mCSM,B-Release [SEP] 2005,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] mCSM [SEP] B-Release [SEP] 2005","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Release [SEP] 2005 [SEP] B-Application [SEP] mCSM"
55,15,B-Application [SEP] mCSM,B-Application [SEP] FoldX,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] mCSM [SEP] B-Application [SEP] FoldX","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] FoldX [SEP] B-Application [SEP] mCSM"
55,35,B-Application [SEP] mCSM,B-Application [SEP] OPLS,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] mCSM [SEP] B-Application [SEP] OPLS","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Application [SEP] mCSM"
55,37,B-Application [SEP] mCSM,B-Citation [SEP] [ 13 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] mCSM [SEP] B-Citation [SEP] [ 13 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Application [SEP] mCSM"
55,41,B-Application [SEP] mCSM,B-Application [SEP] MOE,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] mCSM [SEP] B-Application [SEP] MOE","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] MOE [SEP] B-Application [SEP] mCSM"
55,31,B-Application [SEP] mCSM,B-Citation [SEP] [ 12 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] mCSM [SEP] B-Citation [SEP] [ 12 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Application [SEP] mCSM"
66,65,B-Version [SEP] 2 . 0,B-Application [SEP] iMutant,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Application [SEP] iMutant","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] iMutant [SEP] B-Version [SEP] 2 . 0"
66,56,B-Version [SEP] 2 . 0,B-Citation [SEP] [ 16 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Citation [SEP] [ 16 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Version [SEP] 2 . 0"
66,60,B-Version [SEP] 2 . 0,B-Application [SEP] SDM,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Application [SEP] SDM","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] SDM [SEP] B-Version [SEP] 2 . 0"
66,61,B-Version [SEP] 2 . 0,B-Citation [SEP] [ 17 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Citation [SEP] [ 17 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Version [SEP] 2 . 0"
66,36,B-Version [SEP] 2 . 0,B-Version [SEP] 3,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Version [SEP] 3","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 3 [SEP] B-Version [SEP] 2 . 0"
66,69,B-Version [SEP] 2 . 0,B-Citation [SEP] [ 18 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Citation [SEP] [ 18 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Version [SEP] 2 . 0"
66,73,B-Version [SEP] 2 . 0,B-Application [SEP] POPMUSIC,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Application [SEP] POPMUSIC","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] POPMUSIC [SEP] B-Version [SEP] 2 . 0"
66,74,B-Version [SEP] 2 . 0,B-Citation [SEP] [ 19 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Citation [SEP] [ 19 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Version [SEP] 2 . 0"
66,55,B-Version [SEP] 2 . 0,B-Application [SEP] mCSM,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Application [SEP] mCSM","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] mCSM [SEP] B-Version [SEP] 2 . 0"
66,51,B-Version [SEP] 2 . 0,B-Citation [SEP] [ 15 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Citation [SEP] [ 15 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Version [SEP] 2 . 0"
66,29,B-Version [SEP] 2 . 0,B-Application [SEP] OPLS,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Application [SEP] OPLS","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Version [SEP] 2 . 0"
66,42,B-Version [SEP] 2 . 0,B-Citation [SEP] [ 14 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Citation [SEP] [ 14 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Version [SEP] 2 . 0"
66,50,B-Version [SEP] 2 . 0,B-Application [SEP] CUPSAT,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Application [SEP] CUPSAT","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] CUPSAT [SEP] B-Version [SEP] 2 . 0"
66,16,B-Version [SEP] 2 . 0,B-Citation [SEP] [ 11 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Citation [SEP] [ 11 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Version [SEP] 2 . 0"
66,20,B-Version [SEP] 2 . 0,B-Application [SEP] Schrodinger,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Application [SEP] Schrodinger","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] Schrodinger [SEP] B-Version [SEP] 2 . 0"
66,30,B-Version [SEP] 2 . 0,B-Release [SEP] 2005,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Release [SEP] 2005","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Release [SEP] 2005 [SEP] B-Version [SEP] 2 . 0"
66,15,B-Version [SEP] 2 . 0,B-Application [SEP] FoldX,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Application [SEP] FoldX","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] FoldX [SEP] B-Version [SEP] 2 . 0"
66,35,B-Version [SEP] 2 . 0,B-Application [SEP] OPLS,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Application [SEP] OPLS","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Version [SEP] 2 . 0"
66,37,B-Version [SEP] 2 . 0,B-Citation [SEP] [ 13 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Citation [SEP] [ 13 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Version [SEP] 2 . 0"
66,41,B-Version [SEP] 2 . 0,B-Application [SEP] MOE,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Application [SEP] MOE","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] MOE [SEP] B-Version [SEP] 2 . 0"
66,31,B-Version [SEP] 2 . 0,B-Citation [SEP] [ 12 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Citation [SEP] [ 12 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Version [SEP] 2 . 0"
51,65,B-Citation [SEP] [ 15 ],B-Application [SEP] iMutant,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Application [SEP] iMutant","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] iMutant [SEP] B-Citation [SEP] [ 15 ]"
51,56,B-Citation [SEP] [ 15 ],B-Citation [SEP] [ 16 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Citation [SEP] [ 16 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Citation [SEP] [ 15 ]"
51,60,B-Citation [SEP] [ 15 ],B-Application [SEP] SDM,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Application [SEP] SDM","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] SDM [SEP] B-Citation [SEP] [ 15 ]"
51,61,B-Citation [SEP] [ 15 ],B-Citation [SEP] [ 17 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Citation [SEP] [ 17 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Citation [SEP] [ 15 ]"
51,36,B-Citation [SEP] [ 15 ],B-Version [SEP] 3,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Version [SEP] 3","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 3 [SEP] B-Citation [SEP] [ 15 ]"
51,69,B-Citation [SEP] [ 15 ],B-Citation [SEP] [ 18 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Citation [SEP] [ 18 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Citation [SEP] [ 15 ]"
51,73,B-Citation [SEP] [ 15 ],B-Application [SEP] POPMUSIC,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Application [SEP] POPMUSIC","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] POPMUSIC [SEP] B-Citation [SEP] [ 15 ]"
51,74,B-Citation [SEP] [ 15 ],B-Citation [SEP] [ 19 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Citation [SEP] [ 19 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Citation [SEP] [ 15 ]"
51,55,B-Citation [SEP] [ 15 ],B-Application [SEP] mCSM,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Application [SEP] mCSM","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] mCSM [SEP] B-Citation [SEP] [ 15 ]"
51,66,B-Citation [SEP] [ 15 ],B-Version [SEP] 2 . 0,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Version [SEP] 2 . 0","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Citation [SEP] [ 15 ]"
51,29,B-Citation [SEP] [ 15 ],B-Application [SEP] OPLS,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Application [SEP] OPLS","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Citation [SEP] [ 15 ]"
51,42,B-Citation [SEP] [ 15 ],B-Citation [SEP] [ 14 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Citation [SEP] [ 14 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Citation [SEP] [ 15 ]"
51,50,B-Citation [SEP] [ 15 ],B-Application [SEP] CUPSAT,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Application [SEP] CUPSAT","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] CUPSAT [SEP] B-Citation [SEP] [ 15 ]"
51,16,B-Citation [SEP] [ 15 ],B-Citation [SEP] [ 11 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Citation [SEP] [ 11 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Citation [SEP] [ 15 ]"
51,20,B-Citation [SEP] [ 15 ],B-Application [SEP] Schrodinger,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Application [SEP] Schrodinger","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] Schrodinger [SEP] B-Citation [SEP] [ 15 ]"
51,30,B-Citation [SEP] [ 15 ],B-Release [SEP] 2005,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Release [SEP] 2005","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Release [SEP] 2005 [SEP] B-Citation [SEP] [ 15 ]"
51,15,B-Citation [SEP] [ 15 ],B-Application [SEP] FoldX,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Application [SEP] FoldX","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] FoldX [SEP] B-Citation [SEP] [ 15 ]"
51,35,B-Citation [SEP] [ 15 ],B-Application [SEP] OPLS,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Application [SEP] OPLS","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Citation [SEP] [ 15 ]"
51,37,B-Citation [SEP] [ 15 ],B-Citation [SEP] [ 13 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Citation [SEP] [ 13 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Citation [SEP] [ 15 ]"
51,41,B-Citation [SEP] [ 15 ],B-Application [SEP] MOE,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Application [SEP] MOE","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] MOE [SEP] B-Citation [SEP] [ 15 ]"
51,31,B-Citation [SEP] [ 15 ],B-Citation [SEP] [ 12 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Citation [SEP] [ 12 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Citation [SEP] [ 15 ]"
29,65,B-Application [SEP] OPLS,B-Application [SEP] iMutant,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Application [SEP] iMutant","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] iMutant [SEP] B-Application [SEP] OPLS"
29,56,B-Application [SEP] OPLS,B-Citation [SEP] [ 16 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Citation [SEP] [ 16 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Application [SEP] OPLS"
29,60,B-Application [SEP] OPLS,B-Application [SEP] SDM,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Application [SEP] SDM","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] SDM [SEP] B-Application [SEP] OPLS"
29,61,B-Application [SEP] OPLS,B-Citation [SEP] [ 17 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Citation [SEP] [ 17 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Application [SEP] OPLS"
29,36,B-Application [SEP] OPLS,B-Version [SEP] 3,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Version [SEP] 3","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 3 [SEP] B-Application [SEP] OPLS"
29,69,B-Application [SEP] OPLS,B-Citation [SEP] [ 18 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Citation [SEP] [ 18 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Application [SEP] OPLS"
29,73,B-Application [SEP] OPLS,B-Application [SEP] POPMUSIC,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Application [SEP] POPMUSIC","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] POPMUSIC [SEP] B-Application [SEP] OPLS"
29,74,B-Application [SEP] OPLS,B-Citation [SEP] [ 19 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Citation [SEP] [ 19 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Application [SEP] OPLS"
29,55,B-Application [SEP] OPLS,B-Application [SEP] mCSM,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Application [SEP] mCSM","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] mCSM [SEP] B-Application [SEP] OPLS"
29,66,B-Application [SEP] OPLS,B-Version [SEP] 2 . 0,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Version [SEP] 2 . 0","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Application [SEP] OPLS"
29,51,B-Application [SEP] OPLS,B-Citation [SEP] [ 15 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Citation [SEP] [ 15 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Application [SEP] OPLS"
29,42,B-Application [SEP] OPLS,B-Citation [SEP] [ 14 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Citation [SEP] [ 14 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Application [SEP] OPLS"
29,50,B-Application [SEP] OPLS,B-Application [SEP] CUPSAT,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Application [SEP] CUPSAT","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] CUPSAT [SEP] B-Application [SEP] OPLS"
29,16,B-Application [SEP] OPLS,B-Citation [SEP] [ 11 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Citation [SEP] [ 11 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Application [SEP] OPLS"
29,20,B-Application [SEP] OPLS,B-Application [SEP] Schrodinger,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Application [SEP] Schrodinger","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] Schrodinger [SEP] B-Application [SEP] OPLS"
29,30,B-Application [SEP] OPLS,B-Release [SEP] 2005,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Release [SEP] 2005","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Release [SEP] 2005 [SEP] B-Application [SEP] OPLS"
29,15,B-Application [SEP] OPLS,B-Application [SEP] FoldX,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Application [SEP] FoldX","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] FoldX [SEP] B-Application [SEP] OPLS"
29,37,B-Application [SEP] OPLS,B-Citation [SEP] [ 13 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Citation [SEP] [ 13 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Application [SEP] OPLS"
29,41,B-Application [SEP] OPLS,B-Application [SEP] MOE,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Application [SEP] MOE","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] MOE [SEP] B-Application [SEP] OPLS"
29,31,B-Application [SEP] OPLS,B-Citation [SEP] [ 12 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Citation [SEP] [ 12 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Application [SEP] OPLS"
42,65,B-Citation [SEP] [ 14 ],B-Application [SEP] iMutant,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Application [SEP] iMutant","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] iMutant [SEP] B-Citation [SEP] [ 14 ]"
42,56,B-Citation [SEP] [ 14 ],B-Citation [SEP] [ 16 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Citation [SEP] [ 16 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Citation [SEP] [ 14 ]"
42,60,B-Citation [SEP] [ 14 ],B-Application [SEP] SDM,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Application [SEP] SDM","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] SDM [SEP] B-Citation [SEP] [ 14 ]"
42,61,B-Citation [SEP] [ 14 ],B-Citation [SEP] [ 17 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Citation [SEP] [ 17 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Citation [SEP] [ 14 ]"
42,36,B-Citation [SEP] [ 14 ],B-Version [SEP] 3,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Version [SEP] 3","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 3 [SEP] B-Citation [SEP] [ 14 ]"
42,69,B-Citation [SEP] [ 14 ],B-Citation [SEP] [ 18 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Citation [SEP] [ 18 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Citation [SEP] [ 14 ]"
42,73,B-Citation [SEP] [ 14 ],B-Application [SEP] POPMUSIC,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Application [SEP] POPMUSIC","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] POPMUSIC [SEP] B-Citation [SEP] [ 14 ]"
42,74,B-Citation [SEP] [ 14 ],B-Citation [SEP] [ 19 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Citation [SEP] [ 19 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Citation [SEP] [ 14 ]"
42,55,B-Citation [SEP] [ 14 ],B-Application [SEP] mCSM,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Application [SEP] mCSM","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] mCSM [SEP] B-Citation [SEP] [ 14 ]"
42,66,B-Citation [SEP] [ 14 ],B-Version [SEP] 2 . 0,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Version [SEP] 2 . 0","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Citation [SEP] [ 14 ]"
42,51,B-Citation [SEP] [ 14 ],B-Citation [SEP] [ 15 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Citation [SEP] [ 15 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Citation [SEP] [ 14 ]"
42,29,B-Citation [SEP] [ 14 ],B-Application [SEP] OPLS,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Application [SEP] OPLS","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Citation [SEP] [ 14 ]"
42,50,B-Citation [SEP] [ 14 ],B-Application [SEP] CUPSAT,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Application [SEP] CUPSAT","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] CUPSAT [SEP] B-Citation [SEP] [ 14 ]"
42,16,B-Citation [SEP] [ 14 ],B-Citation [SEP] [ 11 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Citation [SEP] [ 11 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Citation [SEP] [ 14 ]"
42,20,B-Citation [SEP] [ 14 ],B-Application [SEP] Schrodinger,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Application [SEP] Schrodinger","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] Schrodinger [SEP] B-Citation [SEP] [ 14 ]"
42,30,B-Citation [SEP] [ 14 ],B-Release [SEP] 2005,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Release [SEP] 2005","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Release [SEP] 2005 [SEP] B-Citation [SEP] [ 14 ]"
42,15,B-Citation [SEP] [ 14 ],B-Application [SEP] FoldX,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Application [SEP] FoldX","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] FoldX [SEP] B-Citation [SEP] [ 14 ]"
42,35,B-Citation [SEP] [ 14 ],B-Application [SEP] OPLS,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Application [SEP] OPLS","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Citation [SEP] [ 14 ]"
42,37,B-Citation [SEP] [ 14 ],B-Citation [SEP] [ 13 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Citation [SEP] [ 13 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Citation [SEP] [ 14 ]"
42,41,B-Citation [SEP] [ 14 ],B-Application [SEP] MOE,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Application [SEP] MOE","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] MOE [SEP] B-Citation [SEP] [ 14 ]"
42,31,B-Citation [SEP] [ 14 ],B-Citation [SEP] [ 12 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Citation [SEP] [ 12 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Citation [SEP] [ 14 ]"
50,65,B-Application [SEP] CUPSAT,B-Application [SEP] iMutant,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] CUPSAT [SEP] B-Application [SEP] iMutant","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] iMutant [SEP] B-Application [SEP] CUPSAT"
50,56,B-Application [SEP] CUPSAT,B-Citation [SEP] [ 16 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] CUPSAT [SEP] B-Citation [SEP] [ 16 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Application [SEP] CUPSAT"
50,60,B-Application [SEP] CUPSAT,B-Application [SEP] SDM,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] CUPSAT [SEP] B-Application [SEP] SDM","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] SDM [SEP] B-Application [SEP] CUPSAT"
50,61,B-Application [SEP] CUPSAT,B-Citation [SEP] [ 17 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] CUPSAT [SEP] B-Citation [SEP] [ 17 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Application [SEP] CUPSAT"
50,36,B-Application [SEP] CUPSAT,B-Version [SEP] 3,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] CUPSAT [SEP] B-Version [SEP] 3","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 3 [SEP] B-Application [SEP] CUPSAT"
50,69,B-Application [SEP] CUPSAT,B-Citation [SEP] [ 18 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] CUPSAT [SEP] B-Citation [SEP] [ 18 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Application [SEP] CUPSAT"
50,73,B-Application [SEP] CUPSAT,B-Application [SEP] POPMUSIC,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] CUPSAT [SEP] B-Application [SEP] POPMUSIC","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] POPMUSIC [SEP] B-Application [SEP] CUPSAT"
50,74,B-Application [SEP] CUPSAT,B-Citation [SEP] [ 19 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] CUPSAT [SEP] B-Citation [SEP] [ 19 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Application [SEP] CUPSAT"
50,55,B-Application [SEP] CUPSAT,B-Application [SEP] mCSM,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] CUPSAT [SEP] B-Application [SEP] mCSM","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] mCSM [SEP] B-Application [SEP] CUPSAT"
50,66,B-Application [SEP] CUPSAT,B-Version [SEP] 2 . 0,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] CUPSAT [SEP] B-Version [SEP] 2 . 0","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Application [SEP] CUPSAT"
50,51,B-Application [SEP] CUPSAT,B-Citation [SEP] [ 15 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] CUPSAT [SEP] B-Citation [SEP] [ 15 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Application [SEP] CUPSAT"
50,29,B-Application [SEP] CUPSAT,B-Application [SEP] OPLS,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] CUPSAT [SEP] B-Application [SEP] OPLS","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Application [SEP] CUPSAT"
50,42,B-Application [SEP] CUPSAT,B-Citation [SEP] [ 14 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] CUPSAT [SEP] B-Citation [SEP] [ 14 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Application [SEP] CUPSAT"
50,16,B-Application [SEP] CUPSAT,B-Citation [SEP] [ 11 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] CUPSAT [SEP] B-Citation [SEP] [ 11 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Application [SEP] CUPSAT"
50,20,B-Application [SEP] CUPSAT,B-Application [SEP] Schrodinger,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] CUPSAT [SEP] B-Application [SEP] Schrodinger","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] Schrodinger [SEP] B-Application [SEP] CUPSAT"
50,30,B-Application [SEP] CUPSAT,B-Release [SEP] 2005,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] CUPSAT [SEP] B-Release [SEP] 2005","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Release [SEP] 2005 [SEP] B-Application [SEP] CUPSAT"
50,15,B-Application [SEP] CUPSAT,B-Application [SEP] FoldX,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] CUPSAT [SEP] B-Application [SEP] FoldX","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] FoldX [SEP] B-Application [SEP] CUPSAT"
50,35,B-Application [SEP] CUPSAT,B-Application [SEP] OPLS,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] CUPSAT [SEP] B-Application [SEP] OPLS","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Application [SEP] CUPSAT"
50,37,B-Application [SEP] CUPSAT,B-Citation [SEP] [ 13 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] CUPSAT [SEP] B-Citation [SEP] [ 13 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Application [SEP] CUPSAT"
50,41,B-Application [SEP] CUPSAT,B-Application [SEP] MOE,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] CUPSAT [SEP] B-Application [SEP] MOE","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] MOE [SEP] B-Application [SEP] CUPSAT"
50,31,B-Application [SEP] CUPSAT,B-Citation [SEP] [ 12 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] CUPSAT [SEP] B-Citation [SEP] [ 12 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Application [SEP] CUPSAT"
16,65,B-Citation [SEP] [ 11 ],B-Application [SEP] iMutant,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Application [SEP] iMutant","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] iMutant [SEP] B-Citation [SEP] [ 11 ]"
16,56,B-Citation [SEP] [ 11 ],B-Citation [SEP] [ 16 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Citation [SEP] [ 16 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Citation [SEP] [ 11 ]"
16,60,B-Citation [SEP] [ 11 ],B-Application [SEP] SDM,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Application [SEP] SDM","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] SDM [SEP] B-Citation [SEP] [ 11 ]"
16,61,B-Citation [SEP] [ 11 ],B-Citation [SEP] [ 17 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Citation [SEP] [ 17 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Citation [SEP] [ 11 ]"
16,36,B-Citation [SEP] [ 11 ],B-Version [SEP] 3,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Version [SEP] 3","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 3 [SEP] B-Citation [SEP] [ 11 ]"
16,69,B-Citation [SEP] [ 11 ],B-Citation [SEP] [ 18 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Citation [SEP] [ 18 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Citation [SEP] [ 11 ]"
16,73,B-Citation [SEP] [ 11 ],B-Application [SEP] POPMUSIC,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Application [SEP] POPMUSIC","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] POPMUSIC [SEP] B-Citation [SEP] [ 11 ]"
16,74,B-Citation [SEP] [ 11 ],B-Citation [SEP] [ 19 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Citation [SEP] [ 19 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Citation [SEP] [ 11 ]"
16,55,B-Citation [SEP] [ 11 ],B-Application [SEP] mCSM,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Application [SEP] mCSM","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] mCSM [SEP] B-Citation [SEP] [ 11 ]"
16,66,B-Citation [SEP] [ 11 ],B-Version [SEP] 2 . 0,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Version [SEP] 2 . 0","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Citation [SEP] [ 11 ]"
16,51,B-Citation [SEP] [ 11 ],B-Citation [SEP] [ 15 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Citation [SEP] [ 15 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Citation [SEP] [ 11 ]"
16,29,B-Citation [SEP] [ 11 ],B-Application [SEP] OPLS,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Application [SEP] OPLS","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Citation [SEP] [ 11 ]"
16,42,B-Citation [SEP] [ 11 ],B-Citation [SEP] [ 14 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Citation [SEP] [ 14 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Citation [SEP] [ 11 ]"
16,50,B-Citation [SEP] [ 11 ],B-Application [SEP] CUPSAT,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Application [SEP] CUPSAT","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] CUPSAT [SEP] B-Citation [SEP] [ 11 ]"
16,20,B-Citation [SEP] [ 11 ],B-Application [SEP] Schrodinger,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Application [SEP] Schrodinger","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] Schrodinger [SEP] B-Citation [SEP] [ 11 ]"
16,30,B-Citation [SEP] [ 11 ],B-Release [SEP] 2005,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Release [SEP] 2005","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Release [SEP] 2005 [SEP] B-Citation [SEP] [ 11 ]"
16,15,B-Citation [SEP] [ 11 ],B-Application [SEP] FoldX,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Application [SEP] FoldX","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] FoldX [SEP] B-Citation [SEP] [ 11 ]"
16,35,B-Citation [SEP] [ 11 ],B-Application [SEP] OPLS,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Application [SEP] OPLS","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Citation [SEP] [ 11 ]"
16,37,B-Citation [SEP] [ 11 ],B-Citation [SEP] [ 13 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Citation [SEP] [ 13 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Citation [SEP] [ 11 ]"
16,41,B-Citation [SEP] [ 11 ],B-Application [SEP] MOE,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Application [SEP] MOE","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] MOE [SEP] B-Citation [SEP] [ 11 ]"
16,31,B-Citation [SEP] [ 11 ],B-Citation [SEP] [ 12 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Citation [SEP] [ 12 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Citation [SEP] [ 11 ]"
20,65,B-Application [SEP] Schrodinger,B-Application [SEP] iMutant,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] Schrodinger [SEP] B-Application [SEP] iMutant","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] iMutant [SEP] B-Application [SEP] Schrodinger"
20,56,B-Application [SEP] Schrodinger,B-Citation [SEP] [ 16 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] Schrodinger [SEP] B-Citation [SEP] [ 16 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Application [SEP] Schrodinger"
20,60,B-Application [SEP] Schrodinger,B-Application [SEP] SDM,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] Schrodinger [SEP] B-Application [SEP] SDM","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] SDM [SEP] B-Application [SEP] Schrodinger"
20,61,B-Application [SEP] Schrodinger,B-Citation [SEP] [ 17 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] Schrodinger [SEP] B-Citation [SEP] [ 17 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Application [SEP] Schrodinger"
20,36,B-Application [SEP] Schrodinger,B-Version [SEP] 3,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] Schrodinger [SEP] B-Version [SEP] 3","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 3 [SEP] B-Application [SEP] Schrodinger"
20,69,B-Application [SEP] Schrodinger,B-Citation [SEP] [ 18 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] Schrodinger [SEP] B-Citation [SEP] [ 18 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Application [SEP] Schrodinger"
20,73,B-Application [SEP] Schrodinger,B-Application [SEP] POPMUSIC,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] Schrodinger [SEP] B-Application [SEP] POPMUSIC","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] POPMUSIC [SEP] B-Application [SEP] Schrodinger"
20,74,B-Application [SEP] Schrodinger,B-Citation [SEP] [ 19 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] Schrodinger [SEP] B-Citation [SEP] [ 19 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Application [SEP] Schrodinger"
20,55,B-Application [SEP] Schrodinger,B-Application [SEP] mCSM,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] Schrodinger [SEP] B-Application [SEP] mCSM","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] mCSM [SEP] B-Application [SEP] Schrodinger"
20,66,B-Application [SEP] Schrodinger,B-Version [SEP] 2 . 0,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] Schrodinger [SEP] B-Version [SEP] 2 . 0","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Application [SEP] Schrodinger"
20,51,B-Application [SEP] Schrodinger,B-Citation [SEP] [ 15 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] Schrodinger [SEP] B-Citation [SEP] [ 15 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Application [SEP] Schrodinger"
20,29,B-Application [SEP] Schrodinger,B-Application [SEP] OPLS,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] Schrodinger [SEP] B-Application [SEP] OPLS","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Application [SEP] Schrodinger"
20,42,B-Application [SEP] Schrodinger,B-Citation [SEP] [ 14 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] Schrodinger [SEP] B-Citation [SEP] [ 14 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Application [SEP] Schrodinger"
20,50,B-Application [SEP] Schrodinger,B-Application [SEP] CUPSAT,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] Schrodinger [SEP] B-Application [SEP] CUPSAT","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] CUPSAT [SEP] B-Application [SEP] Schrodinger"
20,16,B-Application [SEP] Schrodinger,B-Citation [SEP] [ 11 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] Schrodinger [SEP] B-Citation [SEP] [ 11 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Application [SEP] Schrodinger"
20,30,B-Application [SEP] Schrodinger,B-Release [SEP] 2005,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] Schrodinger [SEP] B-Release [SEP] 2005","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Release [SEP] 2005 [SEP] B-Application [SEP] Schrodinger"
20,15,B-Application [SEP] Schrodinger,B-Application [SEP] FoldX,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] Schrodinger [SEP] B-Application [SEP] FoldX","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] FoldX [SEP] B-Application [SEP] Schrodinger"
20,35,B-Application [SEP] Schrodinger,B-Application [SEP] OPLS,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] Schrodinger [SEP] B-Application [SEP] OPLS","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Application [SEP] Schrodinger"
20,37,B-Application [SEP] Schrodinger,B-Citation [SEP] [ 13 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] Schrodinger [SEP] B-Citation [SEP] [ 13 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Application [SEP] Schrodinger"
20,41,B-Application [SEP] Schrodinger,B-Application [SEP] MOE,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] Schrodinger [SEP] B-Application [SEP] MOE","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] MOE [SEP] B-Application [SEP] Schrodinger"
20,31,B-Application [SEP] Schrodinger,B-Citation [SEP] [ 12 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] Schrodinger [SEP] B-Citation [SEP] [ 12 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Application [SEP] Schrodinger"
30,65,B-Release [SEP] 2005,B-Application [SEP] iMutant,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Release [SEP] 2005 [SEP] B-Application [SEP] iMutant","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] iMutant [SEP] B-Release [SEP] 2005"
30,56,B-Release [SEP] 2005,B-Citation [SEP] [ 16 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Release [SEP] 2005 [SEP] B-Citation [SEP] [ 16 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Release [SEP] 2005"
30,60,B-Release [SEP] 2005,B-Application [SEP] SDM,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Release [SEP] 2005 [SEP] B-Application [SEP] SDM","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] SDM [SEP] B-Release [SEP] 2005"
30,61,B-Release [SEP] 2005,B-Citation [SEP] [ 17 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Release [SEP] 2005 [SEP] B-Citation [SEP] [ 17 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Release [SEP] 2005"
30,36,B-Release [SEP] 2005,B-Version [SEP] 3,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Release [SEP] 2005 [SEP] B-Version [SEP] 3","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 3 [SEP] B-Release [SEP] 2005"
30,69,B-Release [SEP] 2005,B-Citation [SEP] [ 18 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Release [SEP] 2005 [SEP] B-Citation [SEP] [ 18 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Release [SEP] 2005"
30,73,B-Release [SEP] 2005,B-Application [SEP] POPMUSIC,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Release [SEP] 2005 [SEP] B-Application [SEP] POPMUSIC","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] POPMUSIC [SEP] B-Release [SEP] 2005"
30,74,B-Release [SEP] 2005,B-Citation [SEP] [ 19 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Release [SEP] 2005 [SEP] B-Citation [SEP] [ 19 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Release [SEP] 2005"
30,55,B-Release [SEP] 2005,B-Application [SEP] mCSM,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Release [SEP] 2005 [SEP] B-Application [SEP] mCSM","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] mCSM [SEP] B-Release [SEP] 2005"
30,66,B-Release [SEP] 2005,B-Version [SEP] 2 . 0,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Release [SEP] 2005 [SEP] B-Version [SEP] 2 . 0","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Release [SEP] 2005"
30,51,B-Release [SEP] 2005,B-Citation [SEP] [ 15 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Release [SEP] 2005 [SEP] B-Citation [SEP] [ 15 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Release [SEP] 2005"
30,29,B-Release [SEP] 2005,B-Application [SEP] OPLS,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Release [SEP] 2005 [SEP] B-Application [SEP] OPLS","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Release [SEP] 2005"
30,42,B-Release [SEP] 2005,B-Citation [SEP] [ 14 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Release [SEP] 2005 [SEP] B-Citation [SEP] [ 14 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Release [SEP] 2005"
30,50,B-Release [SEP] 2005,B-Application [SEP] CUPSAT,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Release [SEP] 2005 [SEP] B-Application [SEP] CUPSAT","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] CUPSAT [SEP] B-Release [SEP] 2005"
30,16,B-Release [SEP] 2005,B-Citation [SEP] [ 11 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Release [SEP] 2005 [SEP] B-Citation [SEP] [ 11 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Release [SEP] 2005"
30,20,B-Release [SEP] 2005,B-Application [SEP] Schrodinger,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Release [SEP] 2005 [SEP] B-Application [SEP] Schrodinger","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] Schrodinger [SEP] B-Release [SEP] 2005"
30,15,B-Release [SEP] 2005,B-Application [SEP] FoldX,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Release [SEP] 2005 [SEP] B-Application [SEP] FoldX","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] FoldX [SEP] B-Release [SEP] 2005"
30,35,B-Release [SEP] 2005,B-Application [SEP] OPLS,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Release [SEP] 2005 [SEP] B-Application [SEP] OPLS","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Release [SEP] 2005"
30,37,B-Release [SEP] 2005,B-Citation [SEP] [ 13 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Release [SEP] 2005 [SEP] B-Citation [SEP] [ 13 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Release [SEP] 2005"
30,41,B-Release [SEP] 2005,B-Application [SEP] MOE,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Release [SEP] 2005 [SEP] B-Application [SEP] MOE","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] MOE [SEP] B-Release [SEP] 2005"
30,31,B-Release [SEP] 2005,B-Citation [SEP] [ 12 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Release [SEP] 2005 [SEP] B-Citation [SEP] [ 12 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Release [SEP] 2005"
15,65,B-Application [SEP] FoldX,B-Application [SEP] iMutant,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] FoldX [SEP] B-Application [SEP] iMutant","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] iMutant [SEP] B-Application [SEP] FoldX"
15,56,B-Application [SEP] FoldX,B-Citation [SEP] [ 16 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] FoldX [SEP] B-Citation [SEP] [ 16 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Application [SEP] FoldX"
15,60,B-Application [SEP] FoldX,B-Application [SEP] SDM,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] FoldX [SEP] B-Application [SEP] SDM","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] SDM [SEP] B-Application [SEP] FoldX"
15,61,B-Application [SEP] FoldX,B-Citation [SEP] [ 17 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] FoldX [SEP] B-Citation [SEP] [ 17 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Application [SEP] FoldX"
15,36,B-Application [SEP] FoldX,B-Version [SEP] 3,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] FoldX [SEP] B-Version [SEP] 3","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 3 [SEP] B-Application [SEP] FoldX"
15,69,B-Application [SEP] FoldX,B-Citation [SEP] [ 18 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] FoldX [SEP] B-Citation [SEP] [ 18 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Application [SEP] FoldX"
15,73,B-Application [SEP] FoldX,B-Application [SEP] POPMUSIC,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] FoldX [SEP] B-Application [SEP] POPMUSIC","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] POPMUSIC [SEP] B-Application [SEP] FoldX"
15,74,B-Application [SEP] FoldX,B-Citation [SEP] [ 19 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] FoldX [SEP] B-Citation [SEP] [ 19 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Application [SEP] FoldX"
15,55,B-Application [SEP] FoldX,B-Application [SEP] mCSM,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] FoldX [SEP] B-Application [SEP] mCSM","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] mCSM [SEP] B-Application [SEP] FoldX"
15,66,B-Application [SEP] FoldX,B-Version [SEP] 2 . 0,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] FoldX [SEP] B-Version [SEP] 2 . 0","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Application [SEP] FoldX"
15,51,B-Application [SEP] FoldX,B-Citation [SEP] [ 15 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] FoldX [SEP] B-Citation [SEP] [ 15 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Application [SEP] FoldX"
15,29,B-Application [SEP] FoldX,B-Application [SEP] OPLS,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] FoldX [SEP] B-Application [SEP] OPLS","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Application [SEP] FoldX"
15,42,B-Application [SEP] FoldX,B-Citation [SEP] [ 14 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] FoldX [SEP] B-Citation [SEP] [ 14 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Application [SEP] FoldX"
15,50,B-Application [SEP] FoldX,B-Application [SEP] CUPSAT,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] FoldX [SEP] B-Application [SEP] CUPSAT","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] CUPSAT [SEP] B-Application [SEP] FoldX"
15,16,B-Application [SEP] FoldX,B-Citation [SEP] [ 11 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] FoldX [SEP] B-Citation [SEP] [ 11 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Application [SEP] FoldX"
15,20,B-Application [SEP] FoldX,B-Application [SEP] Schrodinger,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] FoldX [SEP] B-Application [SEP] Schrodinger","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] Schrodinger [SEP] B-Application [SEP] FoldX"
15,30,B-Application [SEP] FoldX,B-Release [SEP] 2005,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] FoldX [SEP] B-Release [SEP] 2005","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Release [SEP] 2005 [SEP] B-Application [SEP] FoldX"
15,35,B-Application [SEP] FoldX,B-Application [SEP] OPLS,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] FoldX [SEP] B-Application [SEP] OPLS","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Application [SEP] FoldX"
15,37,B-Application [SEP] FoldX,B-Citation [SEP] [ 13 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] FoldX [SEP] B-Citation [SEP] [ 13 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Application [SEP] FoldX"
15,41,B-Application [SEP] FoldX,B-Application [SEP] MOE,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] FoldX [SEP] B-Application [SEP] MOE","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] MOE [SEP] B-Application [SEP] FoldX"
15,31,B-Application [SEP] FoldX,B-Citation [SEP] [ 12 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] FoldX [SEP] B-Citation [SEP] [ 12 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Application [SEP] FoldX"
35,65,B-Application [SEP] OPLS,B-Application [SEP] iMutant,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Application [SEP] iMutant","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] iMutant [SEP] B-Application [SEP] OPLS"
35,56,B-Application [SEP] OPLS,B-Citation [SEP] [ 16 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Citation [SEP] [ 16 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Application [SEP] OPLS"
35,60,B-Application [SEP] OPLS,B-Application [SEP] SDM,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Application [SEP] SDM","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] SDM [SEP] B-Application [SEP] OPLS"
35,61,B-Application [SEP] OPLS,B-Citation [SEP] [ 17 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Citation [SEP] [ 17 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Application [SEP] OPLS"
35,36,B-Application [SEP] OPLS,B-Version [SEP] 3,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Version [SEP] 3","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 3 [SEP] B-Application [SEP] OPLS"
35,69,B-Application [SEP] OPLS,B-Citation [SEP] [ 18 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Citation [SEP] [ 18 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Application [SEP] OPLS"
35,73,B-Application [SEP] OPLS,B-Application [SEP] POPMUSIC,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Application [SEP] POPMUSIC","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] POPMUSIC [SEP] B-Application [SEP] OPLS"
35,74,B-Application [SEP] OPLS,B-Citation [SEP] [ 19 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Citation [SEP] [ 19 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Application [SEP] OPLS"
35,55,B-Application [SEP] OPLS,B-Application [SEP] mCSM,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Application [SEP] mCSM","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] mCSM [SEP] B-Application [SEP] OPLS"
35,66,B-Application [SEP] OPLS,B-Version [SEP] 2 . 0,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Version [SEP] 2 . 0","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Application [SEP] OPLS"
35,51,B-Application [SEP] OPLS,B-Citation [SEP] [ 15 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Citation [SEP] [ 15 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Application [SEP] OPLS"
35,42,B-Application [SEP] OPLS,B-Citation [SEP] [ 14 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Citation [SEP] [ 14 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Application [SEP] OPLS"
35,50,B-Application [SEP] OPLS,B-Application [SEP] CUPSAT,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Application [SEP] CUPSAT","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] CUPSAT [SEP] B-Application [SEP] OPLS"
35,16,B-Application [SEP] OPLS,B-Citation [SEP] [ 11 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Citation [SEP] [ 11 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Application [SEP] OPLS"
35,20,B-Application [SEP] OPLS,B-Application [SEP] Schrodinger,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Application [SEP] Schrodinger","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] Schrodinger [SEP] B-Application [SEP] OPLS"
35,30,B-Application [SEP] OPLS,B-Release [SEP] 2005,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Release [SEP] 2005","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Release [SEP] 2005 [SEP] B-Application [SEP] OPLS"
35,15,B-Application [SEP] OPLS,B-Application [SEP] FoldX,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Application [SEP] FoldX","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] FoldX [SEP] B-Application [SEP] OPLS"
35,37,B-Application [SEP] OPLS,B-Citation [SEP] [ 13 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Citation [SEP] [ 13 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Application [SEP] OPLS"
35,41,B-Application [SEP] OPLS,B-Application [SEP] MOE,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Application [SEP] MOE","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] MOE [SEP] B-Application [SEP] OPLS"
35,31,B-Application [SEP] OPLS,B-Citation [SEP] [ 12 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Citation [SEP] [ 12 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Application [SEP] OPLS"
37,65,B-Citation [SEP] [ 13 ],B-Application [SEP] iMutant,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Application [SEP] iMutant","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] iMutant [SEP] B-Citation [SEP] [ 13 ]"
37,56,B-Citation [SEP] [ 13 ],B-Citation [SEP] [ 16 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Citation [SEP] [ 16 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Citation [SEP] [ 13 ]"
37,60,B-Citation [SEP] [ 13 ],B-Application [SEP] SDM,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Application [SEP] SDM","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] SDM [SEP] B-Citation [SEP] [ 13 ]"
37,61,B-Citation [SEP] [ 13 ],B-Citation [SEP] [ 17 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Citation [SEP] [ 17 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Citation [SEP] [ 13 ]"
37,36,B-Citation [SEP] [ 13 ],B-Version [SEP] 3,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Version [SEP] 3","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 3 [SEP] B-Citation [SEP] [ 13 ]"
37,69,B-Citation [SEP] [ 13 ],B-Citation [SEP] [ 18 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Citation [SEP] [ 18 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Citation [SEP] [ 13 ]"
37,73,B-Citation [SEP] [ 13 ],B-Application [SEP] POPMUSIC,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Application [SEP] POPMUSIC","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] POPMUSIC [SEP] B-Citation [SEP] [ 13 ]"
37,74,B-Citation [SEP] [ 13 ],B-Citation [SEP] [ 19 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Citation [SEP] [ 19 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Citation [SEP] [ 13 ]"
37,55,B-Citation [SEP] [ 13 ],B-Application [SEP] mCSM,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Application [SEP] mCSM","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] mCSM [SEP] B-Citation [SEP] [ 13 ]"
37,66,B-Citation [SEP] [ 13 ],B-Version [SEP] 2 . 0,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Version [SEP] 2 . 0","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Citation [SEP] [ 13 ]"
37,51,B-Citation [SEP] [ 13 ],B-Citation [SEP] [ 15 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Citation [SEP] [ 15 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Citation [SEP] [ 13 ]"
37,29,B-Citation [SEP] [ 13 ],B-Application [SEP] OPLS,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Application [SEP] OPLS","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Citation [SEP] [ 13 ]"
37,42,B-Citation [SEP] [ 13 ],B-Citation [SEP] [ 14 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Citation [SEP] [ 14 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Citation [SEP] [ 13 ]"
37,50,B-Citation [SEP] [ 13 ],B-Application [SEP] CUPSAT,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Application [SEP] CUPSAT","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] CUPSAT [SEP] B-Citation [SEP] [ 13 ]"
37,16,B-Citation [SEP] [ 13 ],B-Citation [SEP] [ 11 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Citation [SEP] [ 11 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Citation [SEP] [ 13 ]"
37,20,B-Citation [SEP] [ 13 ],B-Application [SEP] Schrodinger,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Application [SEP] Schrodinger","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] Schrodinger [SEP] B-Citation [SEP] [ 13 ]"
37,30,B-Citation [SEP] [ 13 ],B-Release [SEP] 2005,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Release [SEP] 2005","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Release [SEP] 2005 [SEP] B-Citation [SEP] [ 13 ]"
37,15,B-Citation [SEP] [ 13 ],B-Application [SEP] FoldX,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Application [SEP] FoldX","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] FoldX [SEP] B-Citation [SEP] [ 13 ]"
37,35,B-Citation [SEP] [ 13 ],B-Application [SEP] OPLS,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Application [SEP] OPLS","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Citation [SEP] [ 13 ]"
37,41,B-Citation [SEP] [ 13 ],B-Application [SEP] MOE,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Application [SEP] MOE","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] MOE [SEP] B-Citation [SEP] [ 13 ]"
37,31,B-Citation [SEP] [ 13 ],B-Citation [SEP] [ 12 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Citation [SEP] [ 12 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Citation [SEP] [ 13 ]"
41,65,B-Application [SEP] MOE,B-Application [SEP] iMutant,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] MOE [SEP] B-Application [SEP] iMutant","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] iMutant [SEP] B-Application [SEP] MOE"
41,56,B-Application [SEP] MOE,B-Citation [SEP] [ 16 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] MOE [SEP] B-Citation [SEP] [ 16 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Application [SEP] MOE"
41,60,B-Application [SEP] MOE,B-Application [SEP] SDM,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] MOE [SEP] B-Application [SEP] SDM","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] SDM [SEP] B-Application [SEP] MOE"
41,61,B-Application [SEP] MOE,B-Citation [SEP] [ 17 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] MOE [SEP] B-Citation [SEP] [ 17 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Application [SEP] MOE"
41,36,B-Application [SEP] MOE,B-Version [SEP] 3,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] MOE [SEP] B-Version [SEP] 3","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 3 [SEP] B-Application [SEP] MOE"
41,69,B-Application [SEP] MOE,B-Citation [SEP] [ 18 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] MOE [SEP] B-Citation [SEP] [ 18 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Application [SEP] MOE"
41,73,B-Application [SEP] MOE,B-Application [SEP] POPMUSIC,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] MOE [SEP] B-Application [SEP] POPMUSIC","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] POPMUSIC [SEP] B-Application [SEP] MOE"
41,74,B-Application [SEP] MOE,B-Citation [SEP] [ 19 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] MOE [SEP] B-Citation [SEP] [ 19 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Application [SEP] MOE"
41,55,B-Application [SEP] MOE,B-Application [SEP] mCSM,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] MOE [SEP] B-Application [SEP] mCSM","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] mCSM [SEP] B-Application [SEP] MOE"
41,66,B-Application [SEP] MOE,B-Version [SEP] 2 . 0,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] MOE [SEP] B-Version [SEP] 2 . 0","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Application [SEP] MOE"
41,51,B-Application [SEP] MOE,B-Citation [SEP] [ 15 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] MOE [SEP] B-Citation [SEP] [ 15 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Application [SEP] MOE"
41,29,B-Application [SEP] MOE,B-Application [SEP] OPLS,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] MOE [SEP] B-Application [SEP] OPLS","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Application [SEP] MOE"
41,42,B-Application [SEP] MOE,B-Citation [SEP] [ 14 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] MOE [SEP] B-Citation [SEP] [ 14 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Application [SEP] MOE"
41,50,B-Application [SEP] MOE,B-Application [SEP] CUPSAT,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] MOE [SEP] B-Application [SEP] CUPSAT","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] CUPSAT [SEP] B-Application [SEP] MOE"
41,16,B-Application [SEP] MOE,B-Citation [SEP] [ 11 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] MOE [SEP] B-Citation [SEP] [ 11 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Application [SEP] MOE"
41,20,B-Application [SEP] MOE,B-Application [SEP] Schrodinger,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] MOE [SEP] B-Application [SEP] Schrodinger","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] Schrodinger [SEP] B-Application [SEP] MOE"
41,30,B-Application [SEP] MOE,B-Release [SEP] 2005,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] MOE [SEP] B-Release [SEP] 2005","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Release [SEP] 2005 [SEP] B-Application [SEP] MOE"
41,15,B-Application [SEP] MOE,B-Application [SEP] FoldX,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] MOE [SEP] B-Application [SEP] FoldX","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] FoldX [SEP] B-Application [SEP] MOE"
41,35,B-Application [SEP] MOE,B-Application [SEP] OPLS,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] MOE [SEP] B-Application [SEP] OPLS","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Application [SEP] MOE"
41,37,B-Application [SEP] MOE,B-Citation [SEP] [ 13 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] MOE [SEP] B-Citation [SEP] [ 13 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Application [SEP] MOE"
41,31,B-Application [SEP] MOE,B-Citation [SEP] [ 12 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] MOE [SEP] B-Citation [SEP] [ 12 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Application [SEP] MOE"
31,65,B-Citation [SEP] [ 12 ],B-Application [SEP] iMutant,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Application [SEP] iMutant","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] iMutant [SEP] B-Citation [SEP] [ 12 ]"
31,56,B-Citation [SEP] [ 12 ],B-Citation [SEP] [ 16 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Citation [SEP] [ 16 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Citation [SEP] [ 12 ]"
31,60,B-Citation [SEP] [ 12 ],B-Application [SEP] SDM,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Application [SEP] SDM","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] SDM [SEP] B-Citation [SEP] [ 12 ]"
31,61,B-Citation [SEP] [ 12 ],B-Citation [SEP] [ 17 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Citation [SEP] [ 17 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Citation [SEP] [ 12 ]"
31,36,B-Citation [SEP] [ 12 ],B-Version [SEP] 3,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Version [SEP] 3","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 3 [SEP] B-Citation [SEP] [ 12 ]"
31,69,B-Citation [SEP] [ 12 ],B-Citation [SEP] [ 18 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Citation [SEP] [ 18 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Citation [SEP] [ 12 ]"
31,73,B-Citation [SEP] [ 12 ],B-Application [SEP] POPMUSIC,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Application [SEP] POPMUSIC","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] POPMUSIC [SEP] B-Citation [SEP] [ 12 ]"
31,74,B-Citation [SEP] [ 12 ],B-Citation [SEP] [ 19 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Citation [SEP] [ 19 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Citation [SEP] [ 12 ]"
31,55,B-Citation [SEP] [ 12 ],B-Application [SEP] mCSM,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Application [SEP] mCSM","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] mCSM [SEP] B-Citation [SEP] [ 12 ]"
31,66,B-Citation [SEP] [ 12 ],B-Version [SEP] 2 . 0,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Version [SEP] 2 . 0","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Version [SEP] 2 . 0 [SEP] B-Citation [SEP] [ 12 ]"
31,51,B-Citation [SEP] [ 12 ],B-Citation [SEP] [ 15 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Citation [SEP] [ 15 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 15 ] [SEP] B-Citation [SEP] [ 12 ]"
31,29,B-Citation [SEP] [ 12 ],B-Application [SEP] OPLS,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Application [SEP] OPLS","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Citation [SEP] [ 12 ]"
31,42,B-Citation [SEP] [ 12 ],B-Citation [SEP] [ 14 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Citation [SEP] [ 14 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 14 ] [SEP] B-Citation [SEP] [ 12 ]"
31,50,B-Citation [SEP] [ 12 ],B-Application [SEP] CUPSAT,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Application [SEP] CUPSAT","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] CUPSAT [SEP] B-Citation [SEP] [ 12 ]"
31,16,B-Citation [SEP] [ 12 ],B-Citation [SEP] [ 11 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Citation [SEP] [ 11 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Citation [SEP] [ 12 ]"
31,20,B-Citation [SEP] [ 12 ],B-Application [SEP] Schrodinger,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Application [SEP] Schrodinger","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] Schrodinger [SEP] B-Citation [SEP] [ 12 ]"
31,30,B-Citation [SEP] [ 12 ],B-Release [SEP] 2005,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Release [SEP] 2005","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Release [SEP] 2005 [SEP] B-Citation [SEP] [ 12 ]"
31,15,B-Citation [SEP] [ 12 ],B-Application [SEP] FoldX,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Application [SEP] FoldX","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] FoldX [SEP] B-Citation [SEP] [ 12 ]"
31,35,B-Citation [SEP] [ 12 ],B-Application [SEP] OPLS,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Application [SEP] OPLS","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] OPLS [SEP] B-Citation [SEP] [ 12 ]"
31,37,B-Citation [SEP] [ 12 ],B-Citation [SEP] [ 13 ],201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Citation [SEP] [ 13 ]","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 13 ] [SEP] B-Citation [SEP] [ 12 ]"
31,41,B-Citation [SEP] [ 12 ],B-Application [SEP] MOE,201,"Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] .","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Citation [SEP] [ 12 ] [SEP] B-Application [SEP] MOE","Hence , we used 9 tools which consist of standalone molecular modeling packages such as FoldX [ 11 ] , Schrodinger with two differ ( ent force fields , OPLS 2005 [ 12 ] and OPLS 3 [ 13 ] , MOE [ 14 ] and web servers such as CUPSAT [ 15 ] , mCSM [ 16 ] , SDM [ 17 ] , iMutant 2 . 0 [ 18 ] and POPMUSIC [ 19 ] . [SEP] B-Application [SEP] MOE [SEP] B-Citation [SEP] [ 12 ]"
21,22,B-Application [SEP] COOT,B-Citation [SEP] [ 23 ],202,"To perform MD simulations , we selected the first structure from the ensembles of solution structures and mutations were introduced using COOT [ 23 ] .","To perform MD simulations , we selected the first structure from the ensembles of solution structures and mutations were introduced using COOT [ 23 ] . [SEP] B-Application [SEP] COOT [SEP] B-Citation [SEP] [ 23 ]","To perform MD simulations , we selected the first structure from the ensembles of solution structures and mutations were introduced using COOT [ 23 ] . [SEP] B-Citation [SEP] [ 23 ] [SEP] B-Application [SEP] COOT"
22,21,B-Citation [SEP] [ 23 ],B-Application [SEP] COOT,202,"To perform MD simulations , we selected the first structure from the ensembles of solution structures and mutations were introduced using COOT [ 23 ] .","To perform MD simulations , we selected the first structure from the ensembles of solution structures and mutations were introduced using COOT [ 23 ] . [SEP] B-Citation [SEP] [ 23 ] [SEP] B-Application [SEP] COOT","To perform MD simulations , we selected the first structure from the ensembles of solution structures and mutations were introduced using COOT [ 23 ] . [SEP] B-Application [SEP] COOT [SEP] B-Citation [SEP] [ 23 ]"
6,8,B-Application [SEP] MongoDB,B-Version [SEP] 3 . 4 . 10,203,The variant data is stored in MongoDB v 3 . 4 . 10 .,The variant data is stored in MongoDB v 3 . 4 . 10 . [SEP] B-Application [SEP] MongoDB [SEP] B-Version [SEP] 3 . 4 . 10,The variant data is stored in MongoDB v 3 . 4 . 10 . [SEP] B-Version [SEP] 3 . 4 . 10 [SEP] B-Application [SEP] MongoDB
8,6,B-Version [SEP] 3 . 4 . 10,B-Application [SEP] MongoDB,203,The variant data is stored in MongoDB v 3 . 4 . 10 .,The variant data is stored in MongoDB v 3 . 4 . 10 . [SEP] B-Version [SEP] 3 . 4 . 10 [SEP] B-Application [SEP] MongoDB,The variant data is stored in MongoDB v 3 . 4 . 10 . [SEP] B-Application [SEP] MongoDB [SEP] B-Version [SEP] 3 . 4 . 10
11,15,B-Developer [SEP] Apache,B-ProgrammingEnvironment [SEP] PHP,204,The data can be accessed through a web interface running on Apache HTTP server using PHP 7 . 0 .,The data can be accessed through a web interface running on Apache HTTP server using PHP 7 . 0 . [SEP] B-Developer [SEP] Apache [SEP] B-ProgrammingEnvironment [SEP] PHP,The data can be accessed through a web interface running on Apache HTTP server using PHP 7 . 0 . [SEP] B-ProgrammingEnvironment [SEP] PHP [SEP] B-Developer [SEP] Apache
11,16,B-Developer [SEP] Apache,B-Version [SEP] 7 . 0,204,The data can be accessed through a web interface running on Apache HTTP server using PHP 7 . 0 .,The data can be accessed through a web interface running on Apache HTTP server using PHP 7 . 0 . [SEP] B-Developer [SEP] Apache [SEP] B-Version [SEP] 7 . 0,The data can be accessed through a web interface running on Apache HTTP server using PHP 7 . 0 . [SEP] B-Version [SEP] 7 . 0 [SEP] B-Developer [SEP] Apache
15,11,B-ProgrammingEnvironment [SEP] PHP,B-Developer [SEP] Apache,204,The data can be accessed through a web interface running on Apache HTTP server using PHP 7 . 0 .,The data can be accessed through a web interface running on Apache HTTP server using PHP 7 . 0 . [SEP] B-ProgrammingEnvironment [SEP] PHP [SEP] B-Developer [SEP] Apache,The data can be accessed through a web interface running on Apache HTTP server using PHP 7 . 0 . [SEP] B-Developer [SEP] Apache [SEP] B-ProgrammingEnvironment [SEP] PHP
15,16,B-ProgrammingEnvironment [SEP] PHP,B-Version [SEP] 7 . 0,204,The data can be accessed through a web interface running on Apache HTTP server using PHP 7 . 0 .,The data can be accessed through a web interface running on Apache HTTP server using PHP 7 . 0 . [SEP] B-ProgrammingEnvironment [SEP] PHP [SEP] B-Version [SEP] 7 . 0,The data can be accessed through a web interface running on Apache HTTP server using PHP 7 . 0 . [SEP] B-Version [SEP] 7 . 0 [SEP] B-ProgrammingEnvironment [SEP] PHP
16,11,B-Version [SEP] 7 . 0,B-Developer [SEP] Apache,204,The data can be accessed through a web interface running on Apache HTTP server using PHP 7 . 0 .,The data can be accessed through a web interface running on Apache HTTP server using PHP 7 . 0 . [SEP] B-Version [SEP] 7 . 0 [SEP] B-Developer [SEP] Apache,The data can be accessed through a web interface running on Apache HTTP server using PHP 7 . 0 . [SEP] B-Developer [SEP] Apache [SEP] B-Version [SEP] 7 . 0
16,15,B-Version [SEP] 7 . 0,B-ProgrammingEnvironment [SEP] PHP,204,The data can be accessed through a web interface running on Apache HTTP server using PHP 7 . 0 .,The data can be accessed through a web interface running on Apache HTTP server using PHP 7 . 0 . [SEP] B-Version [SEP] 7 . 0 [SEP] B-ProgrammingEnvironment [SEP] PHP,The data can be accessed through a web interface running on Apache HTTP server using PHP 7 . 0 . [SEP] B-ProgrammingEnvironment [SEP] PHP [SEP] B-Version [SEP] 7 . 0
25,23,B-ProgrammingEnvironment [SEP] CSS,B-Version [SEP] 4,205,"The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS .","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] CSS [SEP] B-Version [SEP] 4","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-Version [SEP] 4 [SEP] B-ProgrammingEnvironment [SEP] CSS"
25,22,B-ProgrammingEnvironment [SEP] CSS,B-Application [SEP] Bootstrap,205,"The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS .","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] CSS [SEP] B-Application [SEP] Bootstrap","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-Application [SEP] Bootstrap [SEP] B-ProgrammingEnvironment [SEP] CSS"
25,14,B-ProgrammingEnvironment [SEP] CSS,B-Version [SEP] 7 . 0,205,"The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS .","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] CSS [SEP] B-Version [SEP] 7 . 0","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-Version [SEP] 7 . 0 [SEP] B-ProgrammingEnvironment [SEP] CSS"
25,18,B-ProgrammingEnvironment [SEP] CSS,B-ProgrammingEnvironment [SEP] AngularJS,205,"The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS .","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] CSS [SEP] B-ProgrammingEnvironment [SEP] AngularJS","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] AngularJS [SEP] B-ProgrammingEnvironment [SEP] CSS"
25,13,B-ProgrammingEnvironment [SEP] CSS,B-ProgrammingEnvironment [SEP] PHP,205,"The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS .","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] CSS [SEP] B-ProgrammingEnvironment [SEP] PHP","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] PHP [SEP] B-ProgrammingEnvironment [SEP] CSS"
25,20,B-ProgrammingEnvironment [SEP] CSS,B-ProgrammingEnvironment [SEP] HTML,205,"The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS .","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] CSS [SEP] B-ProgrammingEnvironment [SEP] HTML","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] HTML [SEP] B-ProgrammingEnvironment [SEP] CSS"
23,25,B-Version [SEP] 4,B-ProgrammingEnvironment [SEP] CSS,205,"The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS .","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-Version [SEP] 4 [SEP] B-ProgrammingEnvironment [SEP] CSS","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] CSS [SEP] B-Version [SEP] 4"
23,22,B-Version [SEP] 4,B-Application [SEP] Bootstrap,205,"The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS .","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-Version [SEP] 4 [SEP] B-Application [SEP] Bootstrap","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-Application [SEP] Bootstrap [SEP] B-Version [SEP] 4"
23,14,B-Version [SEP] 4,B-Version [SEP] 7 . 0,205,"The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS .","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-Version [SEP] 4 [SEP] B-Version [SEP] 7 . 0","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-Version [SEP] 7 . 0 [SEP] B-Version [SEP] 4"
23,18,B-Version [SEP] 4,B-ProgrammingEnvironment [SEP] AngularJS,205,"The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS .","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-Version [SEP] 4 [SEP] B-ProgrammingEnvironment [SEP] AngularJS","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] AngularJS [SEP] B-Version [SEP] 4"
23,13,B-Version [SEP] 4,B-ProgrammingEnvironment [SEP] PHP,205,"The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS .","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-Version [SEP] 4 [SEP] B-ProgrammingEnvironment [SEP] PHP","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] PHP [SEP] B-Version [SEP] 4"
23,20,B-Version [SEP] 4,B-ProgrammingEnvironment [SEP] HTML,205,"The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS .","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-Version [SEP] 4 [SEP] B-ProgrammingEnvironment [SEP] HTML","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] HTML [SEP] B-Version [SEP] 4"
22,25,B-Application [SEP] Bootstrap,B-ProgrammingEnvironment [SEP] CSS,205,"The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS .","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-Application [SEP] Bootstrap [SEP] B-ProgrammingEnvironment [SEP] CSS","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] CSS [SEP] B-Application [SEP] Bootstrap"
22,23,B-Application [SEP] Bootstrap,B-Version [SEP] 4,205,"The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS .","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-Application [SEP] Bootstrap [SEP] B-Version [SEP] 4","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-Version [SEP] 4 [SEP] B-Application [SEP] Bootstrap"
22,14,B-Application [SEP] Bootstrap,B-Version [SEP] 7 . 0,205,"The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS .","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-Application [SEP] Bootstrap [SEP] B-Version [SEP] 7 . 0","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-Version [SEP] 7 . 0 [SEP] B-Application [SEP] Bootstrap"
22,18,B-Application [SEP] Bootstrap,B-ProgrammingEnvironment [SEP] AngularJS,205,"The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS .","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-Application [SEP] Bootstrap [SEP] B-ProgrammingEnvironment [SEP] AngularJS","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] AngularJS [SEP] B-Application [SEP] Bootstrap"
22,13,B-Application [SEP] Bootstrap,B-ProgrammingEnvironment [SEP] PHP,205,"The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS .","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-Application [SEP] Bootstrap [SEP] B-ProgrammingEnvironment [SEP] PHP","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] PHP [SEP] B-Application [SEP] Bootstrap"
22,20,B-Application [SEP] Bootstrap,B-ProgrammingEnvironment [SEP] HTML,205,"The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS .","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-Application [SEP] Bootstrap [SEP] B-ProgrammingEnvironment [SEP] HTML","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] HTML [SEP] B-Application [SEP] Bootstrap"
14,25,B-Version [SEP] 7 . 0,B-ProgrammingEnvironment [SEP] CSS,205,"The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS .","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-Version [SEP] 7 . 0 [SEP] B-ProgrammingEnvironment [SEP] CSS","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] CSS [SEP] B-Version [SEP] 7 . 0"
14,23,B-Version [SEP] 7 . 0,B-Version [SEP] 4,205,"The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS .","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-Version [SEP] 7 . 0 [SEP] B-Version [SEP] 4","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-Version [SEP] 4 [SEP] B-Version [SEP] 7 . 0"
14,22,B-Version [SEP] 7 . 0,B-Application [SEP] Bootstrap,205,"The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS .","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-Version [SEP] 7 . 0 [SEP] B-Application [SEP] Bootstrap","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-Application [SEP] Bootstrap [SEP] B-Version [SEP] 7 . 0"
14,18,B-Version [SEP] 7 . 0,B-ProgrammingEnvironment [SEP] AngularJS,205,"The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS .","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-Version [SEP] 7 . 0 [SEP] B-ProgrammingEnvironment [SEP] AngularJS","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] AngularJS [SEP] B-Version [SEP] 7 . 0"
14,13,B-Version [SEP] 7 . 0,B-ProgrammingEnvironment [SEP] PHP,205,"The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS .","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-Version [SEP] 7 . 0 [SEP] B-ProgrammingEnvironment [SEP] PHP","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] PHP [SEP] B-Version [SEP] 7 . 0"
14,20,B-Version [SEP] 7 . 0,B-ProgrammingEnvironment [SEP] HTML,205,"The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS .","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-Version [SEP] 7 . 0 [SEP] B-ProgrammingEnvironment [SEP] HTML","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] HTML [SEP] B-Version [SEP] 7 . 0"
18,25,B-ProgrammingEnvironment [SEP] AngularJS,B-ProgrammingEnvironment [SEP] CSS,205,"The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS .","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] AngularJS [SEP] B-ProgrammingEnvironment [SEP] CSS","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] CSS [SEP] B-ProgrammingEnvironment [SEP] AngularJS"
18,23,B-ProgrammingEnvironment [SEP] AngularJS,B-Version [SEP] 4,205,"The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS .","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] AngularJS [SEP] B-Version [SEP] 4","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-Version [SEP] 4 [SEP] B-ProgrammingEnvironment [SEP] AngularJS"
18,22,B-ProgrammingEnvironment [SEP] AngularJS,B-Application [SEP] Bootstrap,205,"The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS .","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] AngularJS [SEP] B-Application [SEP] Bootstrap","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-Application [SEP] Bootstrap [SEP] B-ProgrammingEnvironment [SEP] AngularJS"
18,14,B-ProgrammingEnvironment [SEP] AngularJS,B-Version [SEP] 7 . 0,205,"The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS .","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] AngularJS [SEP] B-Version [SEP] 7 . 0","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-Version [SEP] 7 . 0 [SEP] B-ProgrammingEnvironment [SEP] AngularJS"
18,13,B-ProgrammingEnvironment [SEP] AngularJS,B-ProgrammingEnvironment [SEP] PHP,205,"The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS .","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] AngularJS [SEP] B-ProgrammingEnvironment [SEP] PHP","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] PHP [SEP] B-ProgrammingEnvironment [SEP] AngularJS"
18,20,B-ProgrammingEnvironment [SEP] AngularJS,B-ProgrammingEnvironment [SEP] HTML,205,"The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS .","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] AngularJS [SEP] B-ProgrammingEnvironment [SEP] HTML","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] HTML [SEP] B-ProgrammingEnvironment [SEP] AngularJS"
13,25,B-ProgrammingEnvironment [SEP] PHP,B-ProgrammingEnvironment [SEP] CSS,205,"The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS .","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] PHP [SEP] B-ProgrammingEnvironment [SEP] CSS","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] CSS [SEP] B-ProgrammingEnvironment [SEP] PHP"
13,23,B-ProgrammingEnvironment [SEP] PHP,B-Version [SEP] 4,205,"The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS .","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] PHP [SEP] B-Version [SEP] 4","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-Version [SEP] 4 [SEP] B-ProgrammingEnvironment [SEP] PHP"
13,22,B-ProgrammingEnvironment [SEP] PHP,B-Application [SEP] Bootstrap,205,"The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS .","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] PHP [SEP] B-Application [SEP] Bootstrap","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-Application [SEP] Bootstrap [SEP] B-ProgrammingEnvironment [SEP] PHP"
13,14,B-ProgrammingEnvironment [SEP] PHP,B-Version [SEP] 7 . 0,205,"The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS .","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] PHP [SEP] B-Version [SEP] 7 . 0","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-Version [SEP] 7 . 0 [SEP] B-ProgrammingEnvironment [SEP] PHP"
13,18,B-ProgrammingEnvironment [SEP] PHP,B-ProgrammingEnvironment [SEP] AngularJS,205,"The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS .","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] PHP [SEP] B-ProgrammingEnvironment [SEP] AngularJS","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] AngularJS [SEP] B-ProgrammingEnvironment [SEP] PHP"
13,20,B-ProgrammingEnvironment [SEP] PHP,B-ProgrammingEnvironment [SEP] HTML,205,"The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS .","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] PHP [SEP] B-ProgrammingEnvironment [SEP] HTML","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] HTML [SEP] B-ProgrammingEnvironment [SEP] PHP"
20,25,B-ProgrammingEnvironment [SEP] HTML,B-ProgrammingEnvironment [SEP] CSS,205,"The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS .","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] HTML [SEP] B-ProgrammingEnvironment [SEP] CSS","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] CSS [SEP] B-ProgrammingEnvironment [SEP] HTML"
20,23,B-ProgrammingEnvironment [SEP] HTML,B-Version [SEP] 4,205,"The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS .","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] HTML [SEP] B-Version [SEP] 4","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-Version [SEP] 4 [SEP] B-ProgrammingEnvironment [SEP] HTML"
20,22,B-ProgrammingEnvironment [SEP] HTML,B-Application [SEP] Bootstrap,205,"The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS .","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] HTML [SEP] B-Application [SEP] Bootstrap","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-Application [SEP] Bootstrap [SEP] B-ProgrammingEnvironment [SEP] HTML"
20,14,B-ProgrammingEnvironment [SEP] HTML,B-Version [SEP] 7 . 0,205,"The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS .","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] HTML [SEP] B-Version [SEP] 7 . 0","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-Version [SEP] 7 . 0 [SEP] B-ProgrammingEnvironment [SEP] HTML"
20,18,B-ProgrammingEnvironment [SEP] HTML,B-ProgrammingEnvironment [SEP] AngularJS,205,"The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS .","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] HTML [SEP] B-ProgrammingEnvironment [SEP] AngularJS","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] AngularJS [SEP] B-ProgrammingEnvironment [SEP] HTML"
20,13,B-ProgrammingEnvironment [SEP] HTML,B-ProgrammingEnvironment [SEP] PHP,205,"The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS .","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] HTML [SEP] B-ProgrammingEnvironment [SEP] PHP","The user - friendly web interface for querying the database is coded in PHP 7 . 0 , AngularJS , HTML , Bootstrap 4 and CSS . [SEP] B-ProgrammingEnvironment [SEP] PHP [SEP] B-ProgrammingEnvironment [SEP] HTML"
0,2,B-Application [SEP] MongoDB,B-Version [SEP] 3 . 4 . 10,206,MongoDB v 3 . 4 . 10 was used to keep track of data processing through the web interface .,MongoDB v 3 . 4 . 10 was used to keep track of data processing through the web interface . [SEP] B-Application [SEP] MongoDB [SEP] B-Version [SEP] 3 . 4 . 10,MongoDB v 3 . 4 . 10 was used to keep track of data processing through the web interface . [SEP] B-Version [SEP] 3 . 4 . 10 [SEP] B-Application [SEP] MongoDB
2,0,B-Version [SEP] 3 . 4 . 10,B-Application [SEP] MongoDB,206,MongoDB v 3 . 4 . 10 was used to keep track of data processing through the web interface .,MongoDB v 3 . 4 . 10 was used to keep track of data processing through the web interface . [SEP] B-Version [SEP] 3 . 4 . 10 [SEP] B-Application [SEP] MongoDB,MongoDB v 3 . 4 . 10 was used to keep track of data processing through the web interface . [SEP] B-Application [SEP] MongoDB [SEP] B-Version [SEP] 3 . 4 . 10
13,16,B-PlugIn [SEP] using,B-ProgrammingEnvironment [SEP] in,207,A total of four functional protein domains were annotated as per Pfam database using maftools package in r - programming .,A total of four functional protein domains were annotated as per Pfam database using maftools package in r - programming . [SEP] B-PlugIn [SEP] using [SEP] B-ProgrammingEnvironment [SEP] in,A total of four functional protein domains were annotated as per Pfam database using maftools package in r - programming . [SEP] B-ProgrammingEnvironment [SEP] in [SEP] B-PlugIn [SEP] using
16,13,B-ProgrammingEnvironment [SEP] in,B-PlugIn [SEP] using,207,A total of four functional protein domains were annotated as per Pfam database using maftools package in r - programming .,A total of four functional protein domains were annotated as per Pfam database using maftools package in r - programming . [SEP] B-ProgrammingEnvironment [SEP] in [SEP] B-PlugIn [SEP] using,A total of four functional protein domains were annotated as per Pfam database using maftools package in r - programming . [SEP] B-PlugIn [SEP] using [SEP] B-ProgrammingEnvironment [SEP] in
16,18,B-Release [SEP] 2005,B-Application [SEP] OPLS,209,"Similarly , when applied to two different force fields , i . e . , OPLS 2005 and OPLS 3 , Schrodinger predicted as ‘ stabilizing ’ for variants R 844C , R 844H , P852L , G876R .","Similarly , when applied to two different force fields , i . e . , OPLS 2005 and OPLS 3 , Schrodinger predicted as ‘ stabilizing ’ for variants R 844C , R 844H , P852L , G876R . [SEP] B-Release [SEP] 2005 [SEP] B-Application [SEP] OPLS","Similarly , when applied to two different force fields , i . e . , OPLS 2005 and OPLS 3 , Schrodinger predicted as ‘ stabilizing ’ for variants R 844C , R 844H , P852L , G876R . [SEP] B-Application [SEP] OPLS [SEP] B-Release [SEP] 2005"
16,19,B-Release [SEP] 2005,B-Version [SEP] 3,209,"Similarly , when applied to two different force fields , i . e . , OPLS 2005 and OPLS 3 , Schrodinger predicted as ‘ stabilizing ’ for variants R 844C , R 844H , P852L , G876R .","Similarly , when applied to two different force fields , i . e . , OPLS 2005 and OPLS 3 , Schrodinger predicted as ‘ stabilizing ’ for variants R 844C , R 844H , P852L , G876R . [SEP] B-Release [SEP] 2005 [SEP] B-Version [SEP] 3","Similarly , when applied to two different force fields , i . e . , OPLS 2005 and OPLS 3 , Schrodinger predicted as ‘ stabilizing ’ for variants R 844C , R 844H , P852L , G876R . [SEP] B-Version [SEP] 3 [SEP] B-Release [SEP] 2005"
16,15,B-Release [SEP] 2005,B-Application [SEP] OPLS,209,"Similarly , when applied to two different force fields , i . e . , OPLS 2005 and OPLS 3 , Schrodinger predicted as ‘ stabilizing ’ for variants R 844C , R 844H , P852L , G876R .","Similarly , when applied to two different force fields , i . e . , OPLS 2005 and OPLS 3 , Schrodinger predicted as ‘ stabilizing ’ for variants R 844C , R 844H , P852L , G876R . [SEP] B-Release [SEP] 2005 [SEP] B-Application [SEP] OPLS","Similarly , when applied to two different force fields , i . e . , OPLS 2005 and OPLS 3 , Schrodinger predicted as ‘ stabilizing ’ for variants R 844C , R 844H , P852L , G876R . [SEP] B-Application [SEP] OPLS [SEP] B-Release [SEP] 2005"
18,16,B-Application [SEP] OPLS,B-Release [SEP] 2005,209,"Similarly , when applied to two different force fields , i . e . , OPLS 2005 and OPLS 3 , Schrodinger predicted as ‘ stabilizing ’ for variants R 844C , R 844H , P852L , G876R .","Similarly , when applied to two different force fields , i . e . , OPLS 2005 and OPLS 3 , Schrodinger predicted as ‘ stabilizing ’ for variants R 844C , R 844H , P852L , G876R . [SEP] B-Application [SEP] OPLS [SEP] B-Release [SEP] 2005","Similarly , when applied to two different force fields , i . e . , OPLS 2005 and OPLS 3 , Schrodinger predicted as ‘ stabilizing ’ for variants R 844C , R 844H , P852L , G876R . [SEP] B-Release [SEP] 2005 [SEP] B-Application [SEP] OPLS"
18,19,B-Application [SEP] OPLS,B-Version [SEP] 3,209,"Similarly , when applied to two different force fields , i . e . , OPLS 2005 and OPLS 3 , Schrodinger predicted as ‘ stabilizing ’ for variants R 844C , R 844H , P852L , G876R .","Similarly , when applied to two different force fields , i . e . , OPLS 2005 and OPLS 3 , Schrodinger predicted as ‘ stabilizing ’ for variants R 844C , R 844H , P852L , G876R . [SEP] B-Application [SEP] OPLS [SEP] B-Version [SEP] 3","Similarly , when applied to two different force fields , i . e . , OPLS 2005 and OPLS 3 , Schrodinger predicted as ‘ stabilizing ’ for variants R 844C , R 844H , P852L , G876R . [SEP] B-Version [SEP] 3 [SEP] B-Application [SEP] OPLS"
19,16,B-Version [SEP] 3,B-Release [SEP] 2005,209,"Similarly , when applied to two different force fields , i . e . , OPLS 2005 and OPLS 3 , Schrodinger predicted as ‘ stabilizing ’ for variants R 844C , R 844H , P852L , G876R .","Similarly , when applied to two different force fields , i . e . , OPLS 2005 and OPLS 3 , Schrodinger predicted as ‘ stabilizing ’ for variants R 844C , R 844H , P852L , G876R . [SEP] B-Version [SEP] 3 [SEP] B-Release [SEP] 2005","Similarly , when applied to two different force fields , i . e . , OPLS 2005 and OPLS 3 , Schrodinger predicted as ‘ stabilizing ’ for variants R 844C , R 844H , P852L , G876R . [SEP] B-Release [SEP] 2005 [SEP] B-Version [SEP] 3"
19,18,B-Version [SEP] 3,B-Application [SEP] OPLS,209,"Similarly , when applied to two different force fields , i . e . , OPLS 2005 and OPLS 3 , Schrodinger predicted as ‘ stabilizing ’ for variants R 844C , R 844H , P852L , G876R .","Similarly , when applied to two different force fields , i . e . , OPLS 2005 and OPLS 3 , Schrodinger predicted as ‘ stabilizing ’ for variants R 844C , R 844H , P852L , G876R . [SEP] B-Version [SEP] 3 [SEP] B-Application [SEP] OPLS","Similarly , when applied to two different force fields , i . e . , OPLS 2005 and OPLS 3 , Schrodinger predicted as ‘ stabilizing ’ for variants R 844C , R 844H , P852L , G876R . [SEP] B-Application [SEP] OPLS [SEP] B-Version [SEP] 3"
19,15,B-Version [SEP] 3,B-Application [SEP] OPLS,209,"Similarly , when applied to two different force fields , i . e . , OPLS 2005 and OPLS 3 , Schrodinger predicted as ‘ stabilizing ’ for variants R 844C , R 844H , P852L , G876R .","Similarly , when applied to two different force fields , i . e . , OPLS 2005 and OPLS 3 , Schrodinger predicted as ‘ stabilizing ’ for variants R 844C , R 844H , P852L , G876R . [SEP] B-Version [SEP] 3 [SEP] B-Application [SEP] OPLS","Similarly , when applied to two different force fields , i . e . , OPLS 2005 and OPLS 3 , Schrodinger predicted as ‘ stabilizing ’ for variants R 844C , R 844H , P852L , G876R . [SEP] B-Application [SEP] OPLS [SEP] B-Version [SEP] 3"
15,16,B-Application [SEP] OPLS,B-Release [SEP] 2005,209,"Similarly , when applied to two different force fields , i . e . , OPLS 2005 and OPLS 3 , Schrodinger predicted as ‘ stabilizing ’ for variants R 844C , R 844H , P852L , G876R .","Similarly , when applied to two different force fields , i . e . , OPLS 2005 and OPLS 3 , Schrodinger predicted as ‘ stabilizing ’ for variants R 844C , R 844H , P852L , G876R . [SEP] B-Application [SEP] OPLS [SEP] B-Release [SEP] 2005","Similarly , when applied to two different force fields , i . e . , OPLS 2005 and OPLS 3 , Schrodinger predicted as ‘ stabilizing ’ for variants R 844C , R 844H , P852L , G876R . [SEP] B-Release [SEP] 2005 [SEP] B-Application [SEP] OPLS"
15,19,B-Application [SEP] OPLS,B-Version [SEP] 3,209,"Similarly , when applied to two different force fields , i . e . , OPLS 2005 and OPLS 3 , Schrodinger predicted as ‘ stabilizing ’ for variants R 844C , R 844H , P852L , G876R .","Similarly , when applied to two different force fields , i . e . , OPLS 2005 and OPLS 3 , Schrodinger predicted as ‘ stabilizing ’ for variants R 844C , R 844H , P852L , G876R . [SEP] B-Application [SEP] OPLS [SEP] B-Version [SEP] 3","Similarly , when applied to two different force fields , i . e . , OPLS 2005 and OPLS 3 , Schrodinger predicted as ‘ stabilizing ’ for variants R 844C , R 844H , P852L , G876R . [SEP] B-Version [SEP] 3 [SEP] B-Application [SEP] OPLS"
5,6,B-Application [SEP] Prism,B-Version [SEP] 8 . 0,210,All analysis was analyzed with Prism 8 . 0 software .,All analysis was analyzed with Prism 8 . 0 software . [SEP] B-Application [SEP] Prism [SEP] B-Version [SEP] 8 . 0,All analysis was analyzed with Prism 8 . 0 software . [SEP] B-Version [SEP] 8 . 0 [SEP] B-Application [SEP] Prism
6,5,B-Version [SEP] 8 . 0,B-Application [SEP] Prism,210,All analysis was analyzed with Prism 8 . 0 software .,All analysis was analyzed with Prism 8 . 0 software . [SEP] B-Version [SEP] 8 . 0 [SEP] B-Application [SEP] Prism,All analysis was analyzed with Prism 8 . 0 software . [SEP] B-Application [SEP] Prism [SEP] B-Version [SEP] 8 . 0
1,7,B-PlugIn [SEP] ProdMX,B-ProgrammingEnvironment [SEP] available,211,"The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx .","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-PlugIn [SEP] ProdMX [SEP] B-ProgrammingEnvironment [SEP] available","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-ProgrammingEnvironment [SEP] available [SEP] B-PlugIn [SEP] ProdMX"
1,19,B-PlugIn [SEP] ProdMX,B-Application [SEP] as,211,"The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx .","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-PlugIn [SEP] ProdMX [SEP] B-Application [SEP] as","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-Application [SEP] as [SEP] B-PlugIn [SEP] ProdMX"
1,21,B-PlugIn [SEP] ProdMX,B-Application [SEP] and,211,"The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx .","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-PlugIn [SEP] ProdMX [SEP] B-Application [SEP] and","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-Application [SEP] and [SEP] B-PlugIn [SEP] ProdMX"
1,34,B-PlugIn [SEP] ProdMX,B-PlugIn [SEP] the,211,"The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx .","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-PlugIn [SEP] ProdMX [SEP] B-PlugIn [SEP] the","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-PlugIn [SEP] the [SEP] B-PlugIn [SEP] ProdMX"
1,35,B-PlugIn [SEP] ProdMX,B-Application [SEP] ProdMX,211,"The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx .","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-PlugIn [SEP] ProdMX [SEP] B-Application [SEP] ProdMX","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-Application [SEP] ProdMX [SEP] B-PlugIn [SEP] ProdMX"
1,38,B-PlugIn [SEP] ProdMX,B-URL [SEP] at,211,"The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx .","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-PlugIn [SEP] ProdMX [SEP] B-URL [SEP] at","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-URL [SEP] at [SEP] B-PlugIn [SEP] ProdMX"
7,1,B-ProgrammingEnvironment [SEP] available,B-PlugIn [SEP] ProdMX,211,"The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx .","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-ProgrammingEnvironment [SEP] available [SEP] B-PlugIn [SEP] ProdMX","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-PlugIn [SEP] ProdMX [SEP] B-ProgrammingEnvironment [SEP] available"
7,19,B-ProgrammingEnvironment [SEP] available,B-Application [SEP] as,211,"The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx .","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-ProgrammingEnvironment [SEP] available [SEP] B-Application [SEP] as","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-Application [SEP] as [SEP] B-ProgrammingEnvironment [SEP] available"
7,21,B-ProgrammingEnvironment [SEP] available,B-Application [SEP] and,211,"The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx .","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-ProgrammingEnvironment [SEP] available [SEP] B-Application [SEP] and","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-Application [SEP] and [SEP] B-ProgrammingEnvironment [SEP] available"
7,34,B-ProgrammingEnvironment [SEP] available,B-PlugIn [SEP] the,211,"The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx .","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-ProgrammingEnvironment [SEP] available [SEP] B-PlugIn [SEP] the","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-PlugIn [SEP] the [SEP] B-ProgrammingEnvironment [SEP] available"
7,35,B-ProgrammingEnvironment [SEP] available,B-Application [SEP] ProdMX,211,"The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx .","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-ProgrammingEnvironment [SEP] available [SEP] B-Application [SEP] ProdMX","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-Application [SEP] ProdMX [SEP] B-ProgrammingEnvironment [SEP] available"
7,38,B-ProgrammingEnvironment [SEP] available,B-URL [SEP] at,211,"The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx .","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-ProgrammingEnvironment [SEP] available [SEP] B-URL [SEP] at","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-URL [SEP] at [SEP] B-ProgrammingEnvironment [SEP] available"
19,1,B-Application [SEP] as,B-PlugIn [SEP] ProdMX,211,"The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx .","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-Application [SEP] as [SEP] B-PlugIn [SEP] ProdMX","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-PlugIn [SEP] ProdMX [SEP] B-Application [SEP] as"
19,7,B-Application [SEP] as,B-ProgrammingEnvironment [SEP] available,211,"The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx .","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-Application [SEP] as [SEP] B-ProgrammingEnvironment [SEP] available","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-ProgrammingEnvironment [SEP] available [SEP] B-Application [SEP] as"
19,21,B-Application [SEP] as,B-Application [SEP] and,211,"The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx .","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-Application [SEP] as [SEP] B-Application [SEP] and","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-Application [SEP] and [SEP] B-Application [SEP] as"
19,34,B-Application [SEP] as,B-PlugIn [SEP] the,211,"The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx .","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-Application [SEP] as [SEP] B-PlugIn [SEP] the","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-PlugIn [SEP] the [SEP] B-Application [SEP] as"
19,35,B-Application [SEP] as,B-Application [SEP] ProdMX,211,"The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx .","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-Application [SEP] as [SEP] B-Application [SEP] ProdMX","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-Application [SEP] ProdMX [SEP] B-Application [SEP] as"
19,38,B-Application [SEP] as,B-URL [SEP] at,211,"The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx .","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-Application [SEP] as [SEP] B-URL [SEP] at","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-URL [SEP] at [SEP] B-Application [SEP] as"
21,1,B-Application [SEP] and,B-PlugIn [SEP] ProdMX,211,"The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx .","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-Application [SEP] and [SEP] B-PlugIn [SEP] ProdMX","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-PlugIn [SEP] ProdMX [SEP] B-Application [SEP] and"
21,7,B-Application [SEP] and,B-ProgrammingEnvironment [SEP] available,211,"The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx .","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-Application [SEP] and [SEP] B-ProgrammingEnvironment [SEP] available","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-ProgrammingEnvironment [SEP] available [SEP] B-Application [SEP] and"
21,19,B-Application [SEP] and,B-Application [SEP] as,211,"The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx .","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-Application [SEP] and [SEP] B-Application [SEP] as","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-Application [SEP] as [SEP] B-Application [SEP] and"
21,34,B-Application [SEP] and,B-PlugIn [SEP] the,211,"The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx .","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-Application [SEP] and [SEP] B-PlugIn [SEP] the","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-PlugIn [SEP] the [SEP] B-Application [SEP] and"
21,35,B-Application [SEP] and,B-Application [SEP] ProdMX,211,"The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx .","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-Application [SEP] and [SEP] B-Application [SEP] ProdMX","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-Application [SEP] ProdMX [SEP] B-Application [SEP] and"
21,38,B-Application [SEP] and,B-URL [SEP] at,211,"The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx .","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-Application [SEP] and [SEP] B-URL [SEP] at","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-URL [SEP] at [SEP] B-Application [SEP] and"
34,1,B-PlugIn [SEP] the,B-PlugIn [SEP] ProdMX,211,"The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx .","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-PlugIn [SEP] the [SEP] B-PlugIn [SEP] ProdMX","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-PlugIn [SEP] ProdMX [SEP] B-PlugIn [SEP] the"
34,7,B-PlugIn [SEP] the,B-ProgrammingEnvironment [SEP] available,211,"The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx .","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-PlugIn [SEP] the [SEP] B-ProgrammingEnvironment [SEP] available","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-ProgrammingEnvironment [SEP] available [SEP] B-PlugIn [SEP] the"
34,19,B-PlugIn [SEP] the,B-Application [SEP] as,211,"The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx .","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-PlugIn [SEP] the [SEP] B-Application [SEP] as","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-Application [SEP] as [SEP] B-PlugIn [SEP] the"
34,21,B-PlugIn [SEP] the,B-Application [SEP] and,211,"The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx .","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-PlugIn [SEP] the [SEP] B-Application [SEP] and","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-Application [SEP] and [SEP] B-PlugIn [SEP] the"
34,35,B-PlugIn [SEP] the,B-Application [SEP] ProdMX,211,"The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx .","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-PlugIn [SEP] the [SEP] B-Application [SEP] ProdMX","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-Application [SEP] ProdMX [SEP] B-PlugIn [SEP] the"
34,38,B-PlugIn [SEP] the,B-URL [SEP] at,211,"The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx .","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-PlugIn [SEP] the [SEP] B-URL [SEP] at","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-URL [SEP] at [SEP] B-PlugIn [SEP] the"
35,1,B-Application [SEP] ProdMX,B-PlugIn [SEP] ProdMX,211,"The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx .","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-Application [SEP] ProdMX [SEP] B-PlugIn [SEP] ProdMX","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-PlugIn [SEP] ProdMX [SEP] B-Application [SEP] ProdMX"
35,7,B-Application [SEP] ProdMX,B-ProgrammingEnvironment [SEP] available,211,"The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx .","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-Application [SEP] ProdMX [SEP] B-ProgrammingEnvironment [SEP] available","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-ProgrammingEnvironment [SEP] available [SEP] B-Application [SEP] ProdMX"
35,19,B-Application [SEP] ProdMX,B-Application [SEP] as,211,"The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx .","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-Application [SEP] ProdMX [SEP] B-Application [SEP] as","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-Application [SEP] as [SEP] B-Application [SEP] ProdMX"
35,21,B-Application [SEP] ProdMX,B-Application [SEP] and,211,"The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx .","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-Application [SEP] ProdMX [SEP] B-Application [SEP] and","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-Application [SEP] and [SEP] B-Application [SEP] ProdMX"
35,34,B-Application [SEP] ProdMX,B-PlugIn [SEP] the,211,"The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx .","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-Application [SEP] ProdMX [SEP] B-PlugIn [SEP] the","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-PlugIn [SEP] the [SEP] B-Application [SEP] ProdMX"
35,38,B-Application [SEP] ProdMX,B-URL [SEP] at,211,"The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx .","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-Application [SEP] ProdMX [SEP] B-URL [SEP] at","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-URL [SEP] at [SEP] B-Application [SEP] ProdMX"
38,1,B-URL [SEP] at,B-PlugIn [SEP] ProdMX,211,"The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx .","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-URL [SEP] at [SEP] B-PlugIn [SEP] ProdMX","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-PlugIn [SEP] ProdMX [SEP] B-URL [SEP] at"
38,7,B-URL [SEP] at,B-ProgrammingEnvironment [SEP] available,211,"The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx .","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-URL [SEP] at [SEP] B-ProgrammingEnvironment [SEP] available","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-ProgrammingEnvironment [SEP] available [SEP] B-URL [SEP] at"
38,19,B-URL [SEP] at,B-Application [SEP] as,211,"The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx .","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-URL [SEP] at [SEP] B-Application [SEP] as","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-Application [SEP] as [SEP] B-URL [SEP] at"
38,21,B-URL [SEP] at,B-Application [SEP] and,211,"The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx .","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-URL [SEP] at [SEP] B-Application [SEP] and","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-Application [SEP] and [SEP] B-URL [SEP] at"
38,34,B-URL [SEP] at,B-PlugIn [SEP] the,211,"The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx .","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-URL [SEP] at [SEP] B-PlugIn [SEP] the","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-PlugIn [SEP] the [SEP] B-URL [SEP] at"
38,35,B-URL [SEP] at,B-Application [SEP] ProdMX,211,"The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx .","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-URL [SEP] at [SEP] B-Application [SEP] ProdMX","The ProdMX is a free and publicly available Python package which can be installed with popular package mangers such as PyPI and Conda , or with a standard installer from source code available on the ProdMX GitHub repository at https://github.com/visanuwan/prodmx . [SEP] B-Application [SEP] ProdMX [SEP] B-URL [SEP] at"
27,0,B-Citation [SEP] tool [ 6,B-Application [SEP] Pfam,212,"Pfam [ 5 ] is a popular database started more than two decades ago , that collects a broad set of protein functional domains using the HMMER tool [ 6 ] .","Pfam [ 5 ] is a popular database started more than two decades ago , that collects a broad set of protein functional domains using the HMMER tool [ 6 ] . [SEP] B-Citation [SEP] tool [ 6 [SEP] B-Application [SEP] Pfam","Pfam [ 5 ] is a popular database started more than two decades ago , that collects a broad set of protein functional domains using the HMMER tool [ 6 ] . [SEP] B-Application [SEP] Pfam [SEP] B-Citation [SEP] tool [ 6"
27,1,B-Citation [SEP] tool [ 6,B-Citation [SEP] [ 5 ],212,"Pfam [ 5 ] is a popular database started more than two decades ago , that collects a broad set of protein functional domains using the HMMER tool [ 6 ] .","Pfam [ 5 ] is a popular database started more than two decades ago , that collects a broad set of protein functional domains using the HMMER tool [ 6 ] . [SEP] B-Citation [SEP] tool [ 6 [SEP] B-Citation [SEP] [ 5 ]","Pfam [ 5 ] is a popular database started more than two decades ago , that collects a broad set of protein functional domains using the HMMER tool [ 6 ] . [SEP] B-Citation [SEP] [ 5 ] [SEP] B-Citation [SEP] tool [ 6"
27,25,B-Citation [SEP] tool [ 6,B-PlugIn [SEP] the,212,"Pfam [ 5 ] is a popular database started more than two decades ago , that collects a broad set of protein functional domains using the HMMER tool [ 6 ] .","Pfam [ 5 ] is a popular database started more than two decades ago , that collects a broad set of protein functional domains using the HMMER tool [ 6 ] . [SEP] B-Citation [SEP] tool [ 6 [SEP] B-PlugIn [SEP] the","Pfam [ 5 ] is a popular database started more than two decades ago , that collects a broad set of protein functional domains using the HMMER tool [ 6 ] . [SEP] B-PlugIn [SEP] the [SEP] B-Citation [SEP] tool [ 6"
0,27,B-Application [SEP] Pfam,B-Citation [SEP] tool [ 6,212,"Pfam [ 5 ] is a popular database started more than two decades ago , that collects a broad set of protein functional domains using the HMMER tool [ 6 ] .","Pfam [ 5 ] is a popular database started more than two decades ago , that collects a broad set of protein functional domains using the HMMER tool [ 6 ] . [SEP] B-Application [SEP] Pfam [SEP] B-Citation [SEP] tool [ 6","Pfam [ 5 ] is a popular database started more than two decades ago , that collects a broad set of protein functional domains using the HMMER tool [ 6 ] . [SEP] B-Citation [SEP] tool [ 6 [SEP] B-Application [SEP] Pfam"
0,1,B-Application [SEP] Pfam,B-Citation [SEP] [ 5 ],212,"Pfam [ 5 ] is a popular database started more than two decades ago , that collects a broad set of protein functional domains using the HMMER tool [ 6 ] .","Pfam [ 5 ] is a popular database started more than two decades ago , that collects a broad set of protein functional domains using the HMMER tool [ 6 ] . [SEP] B-Application [SEP] Pfam [SEP] B-Citation [SEP] [ 5 ]","Pfam [ 5 ] is a popular database started more than two decades ago , that collects a broad set of protein functional domains using the HMMER tool [ 6 ] . [SEP] B-Citation [SEP] [ 5 ] [SEP] B-Application [SEP] Pfam"
0,25,B-Application [SEP] Pfam,B-PlugIn [SEP] the,212,"Pfam [ 5 ] is a popular database started more than two decades ago , that collects a broad set of protein functional domains using the HMMER tool [ 6 ] .","Pfam [ 5 ] is a popular database started more than two decades ago , that collects a broad set of protein functional domains using the HMMER tool [ 6 ] . [SEP] B-Application [SEP] Pfam [SEP] B-PlugIn [SEP] the","Pfam [ 5 ] is a popular database started more than two decades ago , that collects a broad set of protein functional domains using the HMMER tool [ 6 ] . [SEP] B-PlugIn [SEP] the [SEP] B-Application [SEP] Pfam"
1,27,B-Citation [SEP] [ 5 ],B-Citation [SEP] tool [ 6,212,"Pfam [ 5 ] is a popular database started more than two decades ago , that collects a broad set of protein functional domains using the HMMER tool [ 6 ] .","Pfam [ 5 ] is a popular database started more than two decades ago , that collects a broad set of protein functional domains using the HMMER tool [ 6 ] . [SEP] B-Citation [SEP] [ 5 ] [SEP] B-Citation [SEP] tool [ 6","Pfam [ 5 ] is a popular database started more than two decades ago , that collects a broad set of protein functional domains using the HMMER tool [ 6 ] . [SEP] B-Citation [SEP] tool [ 6 [SEP] B-Citation [SEP] [ 5 ]"
1,0,B-Citation [SEP] [ 5 ],B-Application [SEP] Pfam,212,"Pfam [ 5 ] is a popular database started more than two decades ago , that collects a broad set of protein functional domains using the HMMER tool [ 6 ] .","Pfam [ 5 ] is a popular database started more than two decades ago , that collects a broad set of protein functional domains using the HMMER tool [ 6 ] . [SEP] B-Citation [SEP] [ 5 ] [SEP] B-Application [SEP] Pfam","Pfam [ 5 ] is a popular database started more than two decades ago , that collects a broad set of protein functional domains using the HMMER tool [ 6 ] . [SEP] B-Application [SEP] Pfam [SEP] B-Citation [SEP] [ 5 ]"
1,25,B-Citation [SEP] [ 5 ],B-PlugIn [SEP] the,212,"Pfam [ 5 ] is a popular database started more than two decades ago , that collects a broad set of protein functional domains using the HMMER tool [ 6 ] .","Pfam [ 5 ] is a popular database started more than two decades ago , that collects a broad set of protein functional domains using the HMMER tool [ 6 ] . [SEP] B-Citation [SEP] [ 5 ] [SEP] B-PlugIn [SEP] the","Pfam [ 5 ] is a popular database started more than two decades ago , that collects a broad set of protein functional domains using the HMMER tool [ 6 ] . [SEP] B-PlugIn [SEP] the [SEP] B-Citation [SEP] [ 5 ]"
25,27,B-PlugIn [SEP] the,B-Citation [SEP] tool [ 6,212,"Pfam [ 5 ] is a popular database started more than two decades ago , that collects a broad set of protein functional domains using the HMMER tool [ 6 ] .","Pfam [ 5 ] is a popular database started more than two decades ago , that collects a broad set of protein functional domains using the HMMER tool [ 6 ] . [SEP] B-PlugIn [SEP] the [SEP] B-Citation [SEP] tool [ 6","Pfam [ 5 ] is a popular database started more than two decades ago , that collects a broad set of protein functional domains using the HMMER tool [ 6 ] . [SEP] B-Citation [SEP] tool [ 6 [SEP] B-PlugIn [SEP] the"
25,0,B-PlugIn [SEP] the,B-Application [SEP] Pfam,212,"Pfam [ 5 ] is a popular database started more than two decades ago , that collects a broad set of protein functional domains using the HMMER tool [ 6 ] .","Pfam [ 5 ] is a popular database started more than two decades ago , that collects a broad set of protein functional domains using the HMMER tool [ 6 ] . [SEP] B-PlugIn [SEP] the [SEP] B-Application [SEP] Pfam","Pfam [ 5 ] is a popular database started more than two decades ago , that collects a broad set of protein functional domains using the HMMER tool [ 6 ] . [SEP] B-Application [SEP] Pfam [SEP] B-PlugIn [SEP] the"
25,1,B-PlugIn [SEP] the,B-Citation [SEP] [ 5 ],212,"Pfam [ 5 ] is a popular database started more than two decades ago , that collects a broad set of protein functional domains using the HMMER tool [ 6 ] .","Pfam [ 5 ] is a popular database started more than two decades ago , that collects a broad set of protein functional domains using the HMMER tool [ 6 ] . [SEP] B-PlugIn [SEP] the [SEP] B-Citation [SEP] [ 5 ]","Pfam [ 5 ] is a popular database started more than two decades ago , that collects a broad set of protein functional domains using the HMMER tool [ 6 ] . [SEP] B-Citation [SEP] [ 5 ] [SEP] B-PlugIn [SEP] the"
9,10,B-Application [SEP] CDART,B-Citation [SEP] [ 7 ],213,"Early tools for domain architecture comparison , such as CDART [ 7 ] are often implemented as a web - based application , and is limited by the number of inputs .","Early tools for domain architecture comparison , such as CDART [ 7 ] are often implemented as a web - based application , and is limited by the number of inputs . [SEP] B-Application [SEP] CDART [SEP] B-Citation [SEP] [ 7 ]","Early tools for domain architecture comparison , such as CDART [ 7 ] are often implemented as a web - based application , and is limited by the number of inputs . [SEP] B-Citation [SEP] [ 7 ] [SEP] B-Application [SEP] CDART"
10,9,B-Citation [SEP] [ 7 ],B-Application [SEP] CDART,213,"Early tools for domain architecture comparison , such as CDART [ 7 ] are often implemented as a web - based application , and is limited by the number of inputs .","Early tools for domain architecture comparison , such as CDART [ 7 ] are often implemented as a web - based application , and is limited by the number of inputs . [SEP] B-Citation [SEP] [ 7 ] [SEP] B-Application [SEP] CDART","Early tools for domain architecture comparison , such as CDART [ 7 ] are often implemented as a web - based application , and is limited by the number of inputs . [SEP] B-Application [SEP] CDART [SEP] B-Citation [SEP] [ 7 ]"
10,12,B-Application [SEP] Pandas,B-Citation [SEP] [ 11 ],214,The data manipulation in the tool was handled with the Pandas package [ 11 ] .,The data manipulation in the tool was handled with the Pandas package [ 11 ] . [SEP] B-Application [SEP] Pandas [SEP] B-Citation [SEP] [ 11 ],The data manipulation in the tool was handled with the Pandas package [ 11 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Application [SEP] Pandas
12,10,B-Citation [SEP] [ 11 ],B-Application [SEP] Pandas,214,The data manipulation in the tool was handled with the Pandas package [ 11 ] .,The data manipulation in the tool was handled with the Pandas package [ 11 ] . [SEP] B-Citation [SEP] [ 11 ] [SEP] B-Application [SEP] Pandas,The data manipulation in the tool was handled with the Pandas package [ 11 ] . [SEP] B-Application [SEP] Pandas [SEP] B-Citation [SEP] [ 11 ]
21,22,B-Application [SEP] with,B-Citation [SEP] SQlite [ 12,215,The database was implemented to store protein accessions associated with protein functional domains or domain architectures as an option for users with SQlite [ 12 ] .,The database was implemented to store protein accessions associated with protein functional domains or domain architectures as an option for users with SQlite [ 12 ] . [SEP] B-Application [SEP] with [SEP] B-Citation [SEP] SQlite [ 12,The database was implemented to store protein accessions associated with protein functional domains or domain architectures as an option for users with SQlite [ 12 ] . [SEP] B-Citation [SEP] SQlite [ 12 [SEP] B-Application [SEP] with
22,21,B-Citation [SEP] SQlite [ 12,B-Application [SEP] with,215,The database was implemented to store protein accessions associated with protein functional domains or domain architectures as an option for users with SQlite [ 12 ] .,The database was implemented to store protein accessions associated with protein functional domains or domain architectures as an option for users with SQlite [ 12 ] . [SEP] B-Citation [SEP] SQlite [ 12 [SEP] B-Application [SEP] with,The database was implemented to store protein accessions associated with protein functional domains or domain architectures as an option for users with SQlite [ 12 ] . [SEP] B-Application [SEP] with [SEP] B-Citation [SEP] SQlite [ 12
31,32,B-Version [SEP] 32,B-Citation [SEP] [ 17 ],216,"The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures .","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Version [SEP] 32 [SEP] B-Citation [SEP] [ 17 ]","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Version [SEP] 32"
31,29,B-Version [SEP] 32,B-Application [SEP] Pfam,216,"The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures .","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Version [SEP] 32 [SEP] B-Application [SEP] Pfam","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Application [SEP] Pfam [SEP] B-Version [SEP] 32"
31,5,B-Version [SEP] 32,B-Application [SEP] Prodigal,216,"The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures .","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Version [SEP] 32 [SEP] B-Application [SEP] Prodigal","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Application [SEP] Prodigal [SEP] B-Version [SEP] 32"
31,23,B-Version [SEP] 32,B-Application [SEP] HMMER,216,"The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures .","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Version [SEP] 32 [SEP] B-Application [SEP] HMMER","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Application [SEP] HMMER [SEP] B-Version [SEP] 32"
31,6,B-Version [SEP] 32,B-Citation [SEP] [ 16 ],216,"The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures .","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Version [SEP] 32 [SEP] B-Citation [SEP] [ 16 ]","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Version [SEP] 32"
31,24,B-Version [SEP] 32,B-Version [SEP] 3 . 1b 2,216,"The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures .","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Version [SEP] 32 [SEP] B-Version [SEP] 3 . 1b 2","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Version [SEP] 3 . 1b 2 [SEP] B-Version [SEP] 32"
32,31,B-Citation [SEP] [ 17 ],B-Version [SEP] 32,216,"The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures .","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Version [SEP] 32","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Version [SEP] 32 [SEP] B-Citation [SEP] [ 17 ]"
32,29,B-Citation [SEP] [ 17 ],B-Application [SEP] Pfam,216,"The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures .","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Application [SEP] Pfam","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Application [SEP] Pfam [SEP] B-Citation [SEP] [ 17 ]"
32,5,B-Citation [SEP] [ 17 ],B-Application [SEP] Prodigal,216,"The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures .","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Application [SEP] Prodigal","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Application [SEP] Prodigal [SEP] B-Citation [SEP] [ 17 ]"
32,23,B-Citation [SEP] [ 17 ],B-Application [SEP] HMMER,216,"The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures .","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Application [SEP] HMMER","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Application [SEP] HMMER [SEP] B-Citation [SEP] [ 17 ]"
32,6,B-Citation [SEP] [ 17 ],B-Citation [SEP] [ 16 ],216,"The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures .","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Citation [SEP] [ 16 ]","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Citation [SEP] [ 17 ]"
32,24,B-Citation [SEP] [ 17 ],B-Version [SEP] 3 . 1b 2,216,"The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures .","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Version [SEP] 3 . 1b 2","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Version [SEP] 3 . 1b 2 [SEP] B-Citation [SEP] [ 17 ]"
29,31,B-Application [SEP] Pfam,B-Version [SEP] 32,216,"The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures .","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Application [SEP] Pfam [SEP] B-Version [SEP] 32","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Version [SEP] 32 [SEP] B-Application [SEP] Pfam"
29,32,B-Application [SEP] Pfam,B-Citation [SEP] [ 17 ],216,"The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures .","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Application [SEP] Pfam [SEP] B-Citation [SEP] [ 17 ]","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Application [SEP] Pfam"
29,5,B-Application [SEP] Pfam,B-Application [SEP] Prodigal,216,"The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures .","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Application [SEP] Pfam [SEP] B-Application [SEP] Prodigal","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Application [SEP] Prodigal [SEP] B-Application [SEP] Pfam"
29,23,B-Application [SEP] Pfam,B-Application [SEP] HMMER,216,"The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures .","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Application [SEP] Pfam [SEP] B-Application [SEP] HMMER","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Application [SEP] HMMER [SEP] B-Application [SEP] Pfam"
29,6,B-Application [SEP] Pfam,B-Citation [SEP] [ 16 ],216,"The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures .","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Application [SEP] Pfam [SEP] B-Citation [SEP] [ 16 ]","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Application [SEP] Pfam"
29,24,B-Application [SEP] Pfam,B-Version [SEP] 3 . 1b 2,216,"The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures .","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Application [SEP] Pfam [SEP] B-Version [SEP] 3 . 1b 2","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Version [SEP] 3 . 1b 2 [SEP] B-Application [SEP] Pfam"
5,31,B-Application [SEP] Prodigal,B-Version [SEP] 32,216,"The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures .","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Application [SEP] Prodigal [SEP] B-Version [SEP] 32","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Version [SEP] 32 [SEP] B-Application [SEP] Prodigal"
5,32,B-Application [SEP] Prodigal,B-Citation [SEP] [ 17 ],216,"The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures .","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Application [SEP] Prodigal [SEP] B-Citation [SEP] [ 17 ]","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Application [SEP] Prodigal"
5,29,B-Application [SEP] Prodigal,B-Application [SEP] Pfam,216,"The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures .","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Application [SEP] Prodigal [SEP] B-Application [SEP] Pfam","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Application [SEP] Pfam [SEP] B-Application [SEP] Prodigal"
5,23,B-Application [SEP] Prodigal,B-Application [SEP] HMMER,216,"The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures .","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Application [SEP] Prodigal [SEP] B-Application [SEP] HMMER","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Application [SEP] HMMER [SEP] B-Application [SEP] Prodigal"
5,6,B-Application [SEP] Prodigal,B-Citation [SEP] [ 16 ],216,"The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures .","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Application [SEP] Prodigal [SEP] B-Citation [SEP] [ 16 ]","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Application [SEP] Prodigal"
5,24,B-Application [SEP] Prodigal,B-Version [SEP] 3 . 1b 2,216,"The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures .","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Application [SEP] Prodigal [SEP] B-Version [SEP] 3 . 1b 2","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Version [SEP] 3 . 1b 2 [SEP] B-Application [SEP] Prodigal"
23,31,B-Application [SEP] HMMER,B-Version [SEP] 32,216,"The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures .","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Application [SEP] HMMER [SEP] B-Version [SEP] 32","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Version [SEP] 32 [SEP] B-Application [SEP] HMMER"
23,32,B-Application [SEP] HMMER,B-Citation [SEP] [ 17 ],216,"The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures .","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Application [SEP] HMMER [SEP] B-Citation [SEP] [ 17 ]","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Application [SEP] HMMER"
23,29,B-Application [SEP] HMMER,B-Application [SEP] Pfam,216,"The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures .","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Application [SEP] HMMER [SEP] B-Application [SEP] Pfam","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Application [SEP] Pfam [SEP] B-Application [SEP] HMMER"
23,5,B-Application [SEP] HMMER,B-Application [SEP] Prodigal,216,"The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures .","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Application [SEP] HMMER [SEP] B-Application [SEP] Prodigal","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Application [SEP] Prodigal [SEP] B-Application [SEP] HMMER"
23,6,B-Application [SEP] HMMER,B-Citation [SEP] [ 16 ],216,"The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures .","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Application [SEP] HMMER [SEP] B-Citation [SEP] [ 16 ]","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Application [SEP] HMMER"
23,24,B-Application [SEP] HMMER,B-Version [SEP] 3 . 1b 2,216,"The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures .","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Application [SEP] HMMER [SEP] B-Version [SEP] 3 . 1b 2","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Version [SEP] 3 . 1b 2 [SEP] B-Application [SEP] HMMER"
6,31,B-Citation [SEP] [ 16 ],B-Version [SEP] 32,216,"The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures .","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Version [SEP] 32","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Version [SEP] 32 [SEP] B-Citation [SEP] [ 16 ]"
6,32,B-Citation [SEP] [ 16 ],B-Citation [SEP] [ 17 ],216,"The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures .","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Citation [SEP] [ 17 ]","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Citation [SEP] [ 16 ]"
6,29,B-Citation [SEP] [ 16 ],B-Application [SEP] Pfam,216,"The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures .","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Application [SEP] Pfam","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Application [SEP] Pfam [SEP] B-Citation [SEP] [ 16 ]"
6,5,B-Citation [SEP] [ 16 ],B-Application [SEP] Prodigal,216,"The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures .","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Application [SEP] Prodigal","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Application [SEP] Prodigal [SEP] B-Citation [SEP] [ 16 ]"
6,23,B-Citation [SEP] [ 16 ],B-Application [SEP] HMMER,216,"The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures .","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Application [SEP] HMMER","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Application [SEP] HMMER [SEP] B-Citation [SEP] [ 16 ]"
6,24,B-Citation [SEP] [ 16 ],B-Version [SEP] 3 . 1b 2,216,"The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures .","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Version [SEP] 3 . 1b 2","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Version [SEP] 3 . 1b 2 [SEP] B-Citation [SEP] [ 16 ]"
24,31,B-Version [SEP] 3 . 1b 2,B-Version [SEP] 32,216,"The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures .","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Version [SEP] 3 . 1b 2 [SEP] B-Version [SEP] 32","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Version [SEP] 32 [SEP] B-Version [SEP] 3 . 1b 2"
24,32,B-Version [SEP] 3 . 1b 2,B-Citation [SEP] [ 17 ],216,"The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures .","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Version [SEP] 3 . 1b 2 [SEP] B-Citation [SEP] [ 17 ]","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Citation [SEP] [ 17 ] [SEP] B-Version [SEP] 3 . 1b 2"
24,29,B-Version [SEP] 3 . 1b 2,B-Application [SEP] Pfam,216,"The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures .","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Version [SEP] 3 . 1b 2 [SEP] B-Application [SEP] Pfam","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Application [SEP] Pfam [SEP] B-Version [SEP] 3 . 1b 2"
24,5,B-Version [SEP] 3 . 1b 2,B-Application [SEP] Prodigal,216,"The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures .","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Version [SEP] 3 . 1b 2 [SEP] B-Application [SEP] Prodigal","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Application [SEP] Prodigal [SEP] B-Version [SEP] 3 . 1b 2"
24,23,B-Version [SEP] 3 . 1b 2,B-Application [SEP] HMMER,216,"The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures .","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Version [SEP] 3 . 1b 2 [SEP] B-Application [SEP] HMMER","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Application [SEP] HMMER [SEP] B-Version [SEP] 3 . 1b 2"
24,6,B-Version [SEP] 3 . 1b 2,B-Citation [SEP] [ 16 ],216,"The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures .","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Version [SEP] 3 . 1b 2 [SEP] B-Citation [SEP] [ 16 ]","The genomes were run through Prodigal [ 16 ] for prediction of proteins ; the proteins were then searched for functional domains using HMMER 3 . 1b 2 with Pfam version 32 [ 17 ] , resulting 4950 protein functional domains and 11 , 574 domain architectures . [SEP] B-Citation [SEP] [ 16 ] [SEP] B-Version [SEP] 3 . 1b 2"
1,6,B-PlugIn [SEP] ProdMX,B-ProgrammingEnvironment [SEP] Python,217,"The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] .","The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] . [SEP] B-PlugIn [SEP] ProdMX [SEP] B-ProgrammingEnvironment [SEP] Python","The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] . [SEP] B-ProgrammingEnvironment [SEP] Python [SEP] B-PlugIn [SEP] ProdMX"
1,7,B-PlugIn [SEP] ProdMX,B-Version [SEP] 3 . 5,217,"The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] .","The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] . [SEP] B-PlugIn [SEP] ProdMX [SEP] B-Version [SEP] 3 . 5","The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] . [SEP] B-Version [SEP] 3 . 5 [SEP] B-PlugIn [SEP] ProdMX"
1,18,B-PlugIn [SEP] ProdMX,B-Developer [SEP] Python Software Foundation,217,"The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] .","The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] . [SEP] B-PlugIn [SEP] ProdMX [SEP] B-Developer [SEP] Python Software Foundation","The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] . [SEP] B-Developer [SEP] Python Software Foundation [SEP] B-PlugIn [SEP] ProdMX"
1,21,B-PlugIn [SEP] ProdMX,B-Citation [SEP] [ 18 ],217,"The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] .","The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] . [SEP] B-PlugIn [SEP] ProdMX [SEP] B-Citation [SEP] [ 18 ]","The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-PlugIn [SEP] ProdMX"
6,1,B-ProgrammingEnvironment [SEP] Python,B-PlugIn [SEP] ProdMX,217,"The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] .","The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] . [SEP] B-ProgrammingEnvironment [SEP] Python [SEP] B-PlugIn [SEP] ProdMX","The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] . [SEP] B-PlugIn [SEP] ProdMX [SEP] B-ProgrammingEnvironment [SEP] Python"
6,7,B-ProgrammingEnvironment [SEP] Python,B-Version [SEP] 3 . 5,217,"The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] .","The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] . [SEP] B-ProgrammingEnvironment [SEP] Python [SEP] B-Version [SEP] 3 . 5","The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] . [SEP] B-Version [SEP] 3 . 5 [SEP] B-ProgrammingEnvironment [SEP] Python"
6,18,B-ProgrammingEnvironment [SEP] Python,B-Developer [SEP] Python Software Foundation,217,"The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] .","The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] . [SEP] B-ProgrammingEnvironment [SEP] Python [SEP] B-Developer [SEP] Python Software Foundation","The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] . [SEP] B-Developer [SEP] Python Software Foundation [SEP] B-ProgrammingEnvironment [SEP] Python"
6,21,B-ProgrammingEnvironment [SEP] Python,B-Citation [SEP] [ 18 ],217,"The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] .","The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] . [SEP] B-ProgrammingEnvironment [SEP] Python [SEP] B-Citation [SEP] [ 18 ]","The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-ProgrammingEnvironment [SEP] Python"
7,1,B-Version [SEP] 3 . 5,B-PlugIn [SEP] ProdMX,217,"The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] .","The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] . [SEP] B-Version [SEP] 3 . 5 [SEP] B-PlugIn [SEP] ProdMX","The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] . [SEP] B-PlugIn [SEP] ProdMX [SEP] B-Version [SEP] 3 . 5"
7,6,B-Version [SEP] 3 . 5,B-ProgrammingEnvironment [SEP] Python,217,"The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] .","The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] . [SEP] B-Version [SEP] 3 . 5 [SEP] B-ProgrammingEnvironment [SEP] Python","The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] . [SEP] B-ProgrammingEnvironment [SEP] Python [SEP] B-Version [SEP] 3 . 5"
7,18,B-Version [SEP] 3 . 5,B-Developer [SEP] Python Software Foundation,217,"The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] .","The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] . [SEP] B-Version [SEP] 3 . 5 [SEP] B-Developer [SEP] Python Software Foundation","The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] . [SEP] B-Developer [SEP] Python Software Foundation [SEP] B-Version [SEP] 3 . 5"
7,21,B-Version [SEP] 3 . 5,B-Citation [SEP] [ 18 ],217,"The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] .","The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] . [SEP] B-Version [SEP] 3 . 5 [SEP] B-Citation [SEP] [ 18 ]","The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Version [SEP] 3 . 5"
18,1,B-Developer [SEP] Python Software Foundation,B-PlugIn [SEP] ProdMX,217,"The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] .","The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] . [SEP] B-Developer [SEP] Python Software Foundation [SEP] B-PlugIn [SEP] ProdMX","The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] . [SEP] B-PlugIn [SEP] ProdMX [SEP] B-Developer [SEP] Python Software Foundation"
18,6,B-Developer [SEP] Python Software Foundation,B-ProgrammingEnvironment [SEP] Python,217,"The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] .","The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] . [SEP] B-Developer [SEP] Python Software Foundation [SEP] B-ProgrammingEnvironment [SEP] Python","The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] . [SEP] B-ProgrammingEnvironment [SEP] Python [SEP] B-Developer [SEP] Python Software Foundation"
18,7,B-Developer [SEP] Python Software Foundation,B-Version [SEP] 3 . 5,217,"The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] .","The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] . [SEP] B-Developer [SEP] Python Software Foundation [SEP] B-Version [SEP] 3 . 5","The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] . [SEP] B-Version [SEP] 3 . 5 [SEP] B-Developer [SEP] Python Software Foundation"
18,21,B-Developer [SEP] Python Software Foundation,B-Citation [SEP] [ 18 ],217,"The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] .","The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] . [SEP] B-Developer [SEP] Python Software Foundation [SEP] B-Citation [SEP] [ 18 ]","The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Developer [SEP] Python Software Foundation"
21,1,B-Citation [SEP] [ 18 ],B-PlugIn [SEP] ProdMX,217,"The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] .","The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-PlugIn [SEP] ProdMX","The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] . [SEP] B-PlugIn [SEP] ProdMX [SEP] B-Citation [SEP] [ 18 ]"
21,6,B-Citation [SEP] [ 18 ],B-ProgrammingEnvironment [SEP] Python,217,"The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] .","The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-ProgrammingEnvironment [SEP] Python","The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] . [SEP] B-ProgrammingEnvironment [SEP] Python [SEP] B-Citation [SEP] [ 18 ]"
21,7,B-Citation [SEP] [ 18 ],B-Version [SEP] 3 . 5,217,"The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] .","The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Version [SEP] 3 . 5","The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] . [SEP] B-Version [SEP] 3 . 5 [SEP] B-Citation [SEP] [ 18 ]"
21,18,B-Citation [SEP] [ 18 ],B-Developer [SEP] Python Software Foundation,217,"The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] .","The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] . [SEP] B-Citation [SEP] [ 18 ] [SEP] B-Developer [SEP] Python Software Foundation","The ProdMX requires an installation of Python 3 . 5 or newer , which is distributed through the Python Software Foundation [ 18 ] . [SEP] B-Developer [SEP] Python Software Foundation [SEP] B-Citation [SEP] [ 18 ]"
18,14,B-Citation [SEP] [ 19 ],B-Abbreviation [SEP] PyPI,218,Other dependencies can be detected and installed by either the Python Package Index ( PyPI ) or Conda [ 19 ] .,Other dependencies can be detected and installed by either the Python Package Index ( PyPI ) or Conda [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Abbreviation [SEP] PyPI,Other dependencies can be detected and installed by either the Python Package Index ( PyPI ) or Conda [ 19 ] . [SEP] B-Abbreviation [SEP] PyPI [SEP] B-Citation [SEP] [ 19 ]
18,10,B-Citation [SEP] [ 19 ],B-Application [SEP] Python Package Index,218,Other dependencies can be detected and installed by either the Python Package Index ( PyPI ) or Conda [ 19 ] .,Other dependencies can be detected and installed by either the Python Package Index ( PyPI ) or Conda [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Application [SEP] Python Package Index,Other dependencies can be detected and installed by either the Python Package Index ( PyPI ) or Conda [ 19 ] . [SEP] B-Application [SEP] Python Package Index [SEP] B-Citation [SEP] [ 19 ]
18,17,B-Citation [SEP] [ 19 ],B-Application [SEP] Conda,218,Other dependencies can be detected and installed by either the Python Package Index ( PyPI ) or Conda [ 19 ] .,Other dependencies can be detected and installed by either the Python Package Index ( PyPI ) or Conda [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Application [SEP] Conda,Other dependencies can be detected and installed by either the Python Package Index ( PyPI ) or Conda [ 19 ] . [SEP] B-Application [SEP] Conda [SEP] B-Citation [SEP] [ 19 ]
14,18,B-Abbreviation [SEP] PyPI,B-Citation [SEP] [ 19 ],218,Other dependencies can be detected and installed by either the Python Package Index ( PyPI ) or Conda [ 19 ] .,Other dependencies can be detected and installed by either the Python Package Index ( PyPI ) or Conda [ 19 ] . [SEP] B-Abbreviation [SEP] PyPI [SEP] B-Citation [SEP] [ 19 ],Other dependencies can be detected and installed by either the Python Package Index ( PyPI ) or Conda [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Abbreviation [SEP] PyPI
14,10,B-Abbreviation [SEP] PyPI,B-Application [SEP] Python Package Index,218,Other dependencies can be detected and installed by either the Python Package Index ( PyPI ) or Conda [ 19 ] .,Other dependencies can be detected and installed by either the Python Package Index ( PyPI ) or Conda [ 19 ] . [SEP] B-Abbreviation [SEP] PyPI [SEP] B-Application [SEP] Python Package Index,Other dependencies can be detected and installed by either the Python Package Index ( PyPI ) or Conda [ 19 ] . [SEP] B-Application [SEP] Python Package Index [SEP] B-Abbreviation [SEP] PyPI
14,17,B-Abbreviation [SEP] PyPI,B-Application [SEP] Conda,218,Other dependencies can be detected and installed by either the Python Package Index ( PyPI ) or Conda [ 19 ] .,Other dependencies can be detected and installed by either the Python Package Index ( PyPI ) or Conda [ 19 ] . [SEP] B-Abbreviation [SEP] PyPI [SEP] B-Application [SEP] Conda,Other dependencies can be detected and installed by either the Python Package Index ( PyPI ) or Conda [ 19 ] . [SEP] B-Application [SEP] Conda [SEP] B-Abbreviation [SEP] PyPI
10,18,B-Application [SEP] Python Package Index,B-Citation [SEP] [ 19 ],218,Other dependencies can be detected and installed by either the Python Package Index ( PyPI ) or Conda [ 19 ] .,Other dependencies can be detected and installed by either the Python Package Index ( PyPI ) or Conda [ 19 ] . [SEP] B-Application [SEP] Python Package Index [SEP] B-Citation [SEP] [ 19 ],Other dependencies can be detected and installed by either the Python Package Index ( PyPI ) or Conda [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Application [SEP] Python Package Index
10,14,B-Application [SEP] Python Package Index,B-Abbreviation [SEP] PyPI,218,Other dependencies can be detected and installed by either the Python Package Index ( PyPI ) or Conda [ 19 ] .,Other dependencies can be detected and installed by either the Python Package Index ( PyPI ) or Conda [ 19 ] . [SEP] B-Application [SEP] Python Package Index [SEP] B-Abbreviation [SEP] PyPI,Other dependencies can be detected and installed by either the Python Package Index ( PyPI ) or Conda [ 19 ] . [SEP] B-Abbreviation [SEP] PyPI [SEP] B-Application [SEP] Python Package Index
10,17,B-Application [SEP] Python Package Index,B-Application [SEP] Conda,218,Other dependencies can be detected and installed by either the Python Package Index ( PyPI ) or Conda [ 19 ] .,Other dependencies can be detected and installed by either the Python Package Index ( PyPI ) or Conda [ 19 ] . [SEP] B-Application [SEP] Python Package Index [SEP] B-Application [SEP] Conda,Other dependencies can be detected and installed by either the Python Package Index ( PyPI ) or Conda [ 19 ] . [SEP] B-Application [SEP] Conda [SEP] B-Application [SEP] Python Package Index
17,18,B-Application [SEP] Conda,B-Citation [SEP] [ 19 ],218,Other dependencies can be detected and installed by either the Python Package Index ( PyPI ) or Conda [ 19 ] .,Other dependencies can be detected and installed by either the Python Package Index ( PyPI ) or Conda [ 19 ] . [SEP] B-Application [SEP] Conda [SEP] B-Citation [SEP] [ 19 ],Other dependencies can be detected and installed by either the Python Package Index ( PyPI ) or Conda [ 19 ] . [SEP] B-Citation [SEP] [ 19 ] [SEP] B-Application [SEP] Conda
17,14,B-Application [SEP] Conda,B-Abbreviation [SEP] PyPI,218,Other dependencies can be detected and installed by either the Python Package Index ( PyPI ) or Conda [ 19 ] .,Other dependencies can be detected and installed by either the Python Package Index ( PyPI ) or Conda [ 19 ] . [SEP] B-Application [SEP] Conda [SEP] B-Abbreviation [SEP] PyPI,Other dependencies can be detected and installed by either the Python Package Index ( PyPI ) or Conda [ 19 ] . [SEP] B-Abbreviation [SEP] PyPI [SEP] B-Application [SEP] Conda
17,10,B-Application [SEP] Conda,B-Application [SEP] Python Package Index,218,Other dependencies can be detected and installed by either the Python Package Index ( PyPI ) or Conda [ 19 ] .,Other dependencies can be detected and installed by either the Python Package Index ( PyPI ) or Conda [ 19 ] . [SEP] B-Application [SEP] Conda [SEP] B-Application [SEP] Python Package Index,Other dependencies can be detected and installed by either the Python Package Index ( PyPI ) or Conda [ 19 ] . [SEP] B-Application [SEP] Python Package Index [SEP] B-Application [SEP] Conda
8,12,B-Version [SEP] 3 . 1,B-Version [SEP] 3 . 2,219,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) .,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-Version [SEP] 3 . 1 [SEP] B-Version [SEP] 3 . 2,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-Version [SEP] 3 . 2 [SEP] B-Version [SEP] 3 . 1
8,16,B-Version [SEP] 3 . 1,B-Application [SEP] Jupyter Notebook,219,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) .,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-Version [SEP] 3 . 1 [SEP] B-Application [SEP] Jupyter Notebook,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-Application [SEP] Jupyter Notebook [SEP] B-Version [SEP] 3 . 1
8,23,B-Version [SEP] 3 . 1,B-PlugIn [SEP] ProdMX,219,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) .,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-Version [SEP] 3 . 1 [SEP] B-PlugIn [SEP] ProdMX,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-PlugIn [SEP] ProdMX [SEP] B-Version [SEP] 3 . 1
8,24,B-Version [SEP] 3 . 1,B-Application [SEP] GitHub,219,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) .,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-Version [SEP] 3 . 1 [SEP] B-Application [SEP] GitHub,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-Application [SEP] GitHub [SEP] B-Version [SEP] 3 . 1
8,27,B-Version [SEP] 3 . 1,B-URL [SEP] https://github.com/visanuwan/prodmx,219,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) .,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-Version [SEP] 3 . 1 [SEP] B-URL [SEP] https://github.com/visanuwan/prodmx,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-URL [SEP] https://github.com/visanuwan/prodmx [SEP] B-Version [SEP] 3 . 1
12,8,B-Version [SEP] 3 . 2,B-Version [SEP] 3 . 1,219,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) .,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-Version [SEP] 3 . 2 [SEP] B-Version [SEP] 3 . 1,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-Version [SEP] 3 . 1 [SEP] B-Version [SEP] 3 . 2
12,16,B-Version [SEP] 3 . 2,B-Application [SEP] Jupyter Notebook,219,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) .,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-Version [SEP] 3 . 2 [SEP] B-Application [SEP] Jupyter Notebook,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-Application [SEP] Jupyter Notebook [SEP] B-Version [SEP] 3 . 2
12,23,B-Version [SEP] 3 . 2,B-PlugIn [SEP] ProdMX,219,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) .,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-Version [SEP] 3 . 2 [SEP] B-PlugIn [SEP] ProdMX,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-PlugIn [SEP] ProdMX [SEP] B-Version [SEP] 3 . 2
12,24,B-Version [SEP] 3 . 2,B-Application [SEP] GitHub,219,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) .,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-Version [SEP] 3 . 2 [SEP] B-Application [SEP] GitHub,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-Application [SEP] GitHub [SEP] B-Version [SEP] 3 . 2
12,27,B-Version [SEP] 3 . 2,B-URL [SEP] https://github.com/visanuwan/prodmx,219,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) .,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-Version [SEP] 3 . 2 [SEP] B-URL [SEP] https://github.com/visanuwan/prodmx,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-URL [SEP] https://github.com/visanuwan/prodmx [SEP] B-Version [SEP] 3 . 2
16,8,B-Application [SEP] Jupyter Notebook,B-Version [SEP] 3 . 1,219,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) .,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-Application [SEP] Jupyter Notebook [SEP] B-Version [SEP] 3 . 1,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-Version [SEP] 3 . 1 [SEP] B-Application [SEP] Jupyter Notebook
16,12,B-Application [SEP] Jupyter Notebook,B-Version [SEP] 3 . 2,219,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) .,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-Application [SEP] Jupyter Notebook [SEP] B-Version [SEP] 3 . 2,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-Version [SEP] 3 . 2 [SEP] B-Application [SEP] Jupyter Notebook
16,23,B-Application [SEP] Jupyter Notebook,B-PlugIn [SEP] ProdMX,219,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) .,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-Application [SEP] Jupyter Notebook [SEP] B-PlugIn [SEP] ProdMX,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-PlugIn [SEP] ProdMX [SEP] B-Application [SEP] Jupyter Notebook
16,24,B-Application [SEP] Jupyter Notebook,B-Application [SEP] GitHub,219,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) .,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-Application [SEP] Jupyter Notebook [SEP] B-Application [SEP] GitHub,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-Application [SEP] GitHub [SEP] B-Application [SEP] Jupyter Notebook
16,27,B-Application [SEP] Jupyter Notebook,B-URL [SEP] https://github.com/visanuwan/prodmx,219,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) .,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-Application [SEP] Jupyter Notebook [SEP] B-URL [SEP] https://github.com/visanuwan/prodmx,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-URL [SEP] https://github.com/visanuwan/prodmx [SEP] B-Application [SEP] Jupyter Notebook
23,8,B-PlugIn [SEP] ProdMX,B-Version [SEP] 3 . 1,219,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) .,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-PlugIn [SEP] ProdMX [SEP] B-Version [SEP] 3 . 1,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-Version [SEP] 3 . 1 [SEP] B-PlugIn [SEP] ProdMX
23,12,B-PlugIn [SEP] ProdMX,B-Version [SEP] 3 . 2,219,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) .,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-PlugIn [SEP] ProdMX [SEP] B-Version [SEP] 3 . 2,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-Version [SEP] 3 . 2 [SEP] B-PlugIn [SEP] ProdMX
23,16,B-PlugIn [SEP] ProdMX,B-Application [SEP] Jupyter Notebook,219,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) .,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-PlugIn [SEP] ProdMX [SEP] B-Application [SEP] Jupyter Notebook,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-Application [SEP] Jupyter Notebook [SEP] B-PlugIn [SEP] ProdMX
23,24,B-PlugIn [SEP] ProdMX,B-Application [SEP] GitHub,219,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) .,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-PlugIn [SEP] ProdMX [SEP] B-Application [SEP] GitHub,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-Application [SEP] GitHub [SEP] B-PlugIn [SEP] ProdMX
23,27,B-PlugIn [SEP] ProdMX,B-URL [SEP] https://github.com/visanuwan/prodmx,219,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) .,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-PlugIn [SEP] ProdMX [SEP] B-URL [SEP] https://github.com/visanuwan/prodmx,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-URL [SEP] https://github.com/visanuwan/prodmx [SEP] B-PlugIn [SEP] ProdMX
24,8,B-Application [SEP] GitHub,B-Version [SEP] 3 . 1,219,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) .,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-Application [SEP] GitHub [SEP] B-Version [SEP] 3 . 1,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-Version [SEP] 3 . 1 [SEP] B-Application [SEP] GitHub
24,12,B-Application [SEP] GitHub,B-Version [SEP] 3 . 2,219,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) .,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-Application [SEP] GitHub [SEP] B-Version [SEP] 3 . 2,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-Version [SEP] 3 . 2 [SEP] B-Application [SEP] GitHub
24,16,B-Application [SEP] GitHub,B-Application [SEP] Jupyter Notebook,219,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) .,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-Application [SEP] GitHub [SEP] B-Application [SEP] Jupyter Notebook,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-Application [SEP] Jupyter Notebook [SEP] B-Application [SEP] GitHub
24,23,B-Application [SEP] GitHub,B-PlugIn [SEP] ProdMX,219,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) .,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-Application [SEP] GitHub [SEP] B-PlugIn [SEP] ProdMX,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-PlugIn [SEP] ProdMX [SEP] B-Application [SEP] GitHub
24,27,B-Application [SEP] GitHub,B-URL [SEP] https://github.com/visanuwan/prodmx,219,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) .,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-Application [SEP] GitHub [SEP] B-URL [SEP] https://github.com/visanuwan/prodmx,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-URL [SEP] https://github.com/visanuwan/prodmx [SEP] B-Application [SEP] GitHub
27,8,B-URL [SEP] https://github.com/visanuwan/prodmx,B-Version [SEP] 3 . 1,219,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) .,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-URL [SEP] https://github.com/visanuwan/prodmx [SEP] B-Version [SEP] 3 . 1,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-Version [SEP] 3 . 1 [SEP] B-URL [SEP] https://github.com/visanuwan/prodmx
27,12,B-URL [SEP] https://github.com/visanuwan/prodmx,B-Version [SEP] 3 . 2,219,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) .,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-URL [SEP] https://github.com/visanuwan/prodmx [SEP] B-Version [SEP] 3 . 2,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-Version [SEP] 3 . 2 [SEP] B-URL [SEP] https://github.com/visanuwan/prodmx
27,16,B-URL [SEP] https://github.com/visanuwan/prodmx,B-Application [SEP] Jupyter Notebook,219,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) .,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-URL [SEP] https://github.com/visanuwan/prodmx [SEP] B-Application [SEP] Jupyter Notebook,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-Application [SEP] Jupyter Notebook [SEP] B-URL [SEP] https://github.com/visanuwan/prodmx
27,23,B-URL [SEP] https://github.com/visanuwan/prodmx,B-PlugIn [SEP] ProdMX,219,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) .,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-URL [SEP] https://github.com/visanuwan/prodmx [SEP] B-PlugIn [SEP] ProdMX,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-PlugIn [SEP] ProdMX [SEP] B-URL [SEP] https://github.com/visanuwan/prodmx
27,24,B-URL [SEP] https://github.com/visanuwan/prodmx,B-Application [SEP] GitHub,219,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) .,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-URL [SEP] https://github.com/visanuwan/prodmx [SEP] B-Application [SEP] GitHub,The test data and extended versions for example 3 . 1 and 3 . 2 in Jupyter Notebook can be downloaded at the ProdMX GitHub repository ( https://github.com/visanuwan/prodmx ) . [SEP] B-Application [SEP] GitHub [SEP] B-URL [SEP] https://github.com/visanuwan/prodmx
19,19,B-Citation [SEP] [ 40 ],B-Citation [SEP] [ 40 ],14,The evolutionary conservation of each amino acid position in the alignment is calculated by using the Rate 4Site algorithm [ 40 ] .,The evolutionary conservation of each amino acid position in the alignment is calculated by using the Rate 4Site algorithm [ 40 ] . [SEP] B-Citation [SEP] [ 40 ] [SEP] B-Citation [SEP] [ 40 ],The evolutionary conservation of each amino acid position in the alignment is calculated by using the Rate 4Site algorithm [ 40 ] . [SEP] B-Citation [SEP] [ 40 ] [SEP] B-Citation [SEP] [ 40 ]
2,2,B-Application [SEP] Bowtie 2,B-Application [SEP] Bowtie 2,126,"Mapping with Bowtie 2 against the B . rapa v 3 . 0 genome [ 16 ] yielded an average 82 % mapping rate , where 42 - 61 % of the reads mapped to multiple locations ( Table S1 ) , likely reflecting the mesopolyploid nature of the B . rapa genome or the abundance of repeated DNA elements .","Mapping with Bowtie 2 against the B . rapa v 3 . 0 genome [ 16 ] yielded an average 82 % mapping rate , where 42 - 61 % of the reads mapped to multiple locations ( Table S1 ) , likely reflecting the mesopolyploid nature of the B . rapa genome or the abundance of repeated DNA elements . [SEP] B-Application [SEP] Bowtie 2 [SEP] B-Application [SEP] Bowtie 2","Mapping with Bowtie 2 against the B . rapa v 3 . 0 genome [ 16 ] yielded an average 82 % mapping rate , where 42 - 61 % of the reads mapped to multiple locations ( Table S1 ) , likely reflecting the mesopolyploid nature of the B . rapa genome or the abundance of repeated DNA elements . [SEP] B-Application [SEP] Bowtie 2 [SEP] B-Application [SEP] Bowtie 2"
0,0,O [SEP] O,O [SEP] O,208,"The datasets considered include the 1000 Genomes , ExAC and the gnomAD ( version 2 ) .","The datasets considered include the 1000 Genomes , ExAC and the gnomAD ( version 2 ) . [SEP] O [SEP] O [SEP] O [SEP] O","The datasets considered include the 1000 Genomes , ExAC and the gnomAD ( version 2 ) . [SEP] O [SEP] O [SEP] O [SEP] O"