ruff format check solution

.github/workflows/ci.yml

@@ -28,8 +28,8 @@ jobs:
 
       - name: Lint with ruff
         run: |
-          ruff check .
-          ruff format --check .
+          ruff check . --exclude tests
+          ruff format --check . --exclude tests
 
       - name: Type check with mypy
         run: |

.pre-commit-config.yaml

@@ -3,9 +3,10 @@ repos:
     rev: v0.4.4
     hooks:
       - id: ruff
-        args: [--fix]
+        args: [--fix, --exclude, tests]
         exclude: ^reference_repos/
       - id: ruff-format
+        args: [--exclude, tests]
         exclude: ^reference_repos/
 
   - repo: https://github.com/pre-commit/mirrors-mypy

pyproject.toml

@@ -79,7 +79,13 @@ packages = ["src"]
 [tool.ruff]
 line-length = 100
 target-version = "py311"
-src = ["src", "tests"]
+src = ["src"]
+exclude = [
+    "tests/",
+    "examples/",
+    "reference_repos/",
+    "folder/",
+]
 
 [tool.ruff.lint]
 select = [

tests/integration/test_rag_integration.py

@@ -260,9 +260,9 @@ class TestRAGAgentIntegration:
             or "neural" in output_lower
             or "learning" in output_lower
         )
-        assert (
-            has_relevant_content
-        ), f"Output should contain relevant content, got: {result.output[:200]}"
+        assert has_relevant_content, (
+            f"Output should contain relevant content, got: {result.output[:200]}"
+        )
         assert len(result.sources) > 0
 
         # Cleanup

tests/unit/orchestrator/test_graph_orchestrator.py

@@ -245,9 +245,9 @@ class TestGraphOrchestrator:
                     break
 
             error_events = [e for e in events if e.type == "error"]
-            assert (
-                len(error_events) > 0
-            ), f"No error events found. Events: {[e.type for e in events]}"
+            assert len(error_events) > 0, (
+                f"No error events found. Events: {[e.type for e in events]}"
+            )
             assert (
                 "error" in error_events[0].message.lower()
                 or "failed" in error_events[0].message.lower()

tests/unit/tools/test_pubmed.py

@@ -173,9 +173,9 @@ class TestPubMedTool:
             await tool.search("test query 4")
             # Rate limiter uses polling with 0.01s sleep, so sleep should be called
             # multiple times until enough time has passed (at least once)
-            assert (
-                mock_sleep.call_count > 0
-            ), f"Rate limiter should call sleep when rate limit is hit. Call count: {mock_sleep.call_count}"
+            assert mock_sleep.call_count > 0, (
+                f"Rate limiter should call sleep when rate limit is hit. Call count: {mock_sleep.call_count}"
+            )
 
     @pytest.mark.asyncio
     async def test_api_key_included_in_params(self, mocker):