Commit History

fix: address CodeRabbit review feedback for Phase 13
f32a2ca

VibecoderMcSwaggins commited on

docs: add AI agent context files for team collaboration
5e7604a

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fix: wire analyze_hypothesis MCP tool into Gradio app
521d97d

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feat: implement phase 13 modal pipeline integration
7cc8b69

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Merge pull request #20 from The-Obstacle-Is-The-Way/feat/phase12-mcp-server
5264b25
unverified

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docs: address CodeRabbit feedback for Phase 12 PR
f9cb2b7

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docs: update MCP server integration documentation and status
cde8f48

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feat: enhance Gradio UI with MCP server support and new tool interfaces
10e234c

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feat: add MCP tool wrappers for biomedical search tools
c114650

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chore: update Gradio dependency to include MCP extras and version bump
f5b2917

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docs: enhance Phase 13 Modal integration documentation
0d84878

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docs: add Phase 14 Demo Video & Hackathon Submission specification
e16b9e6

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docs: add Phase 12 MCP Server Integration specification
dd587c9

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docs: add comprehensive hackathon documentation and integration plans
7b20f5d

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feat: Phase 11 bioRxiv Preprint Integration (#19)
e67c99f
unverified

VibecoderMcSwaggins commited on

Merge pull request #16 from The-Obstacle-Is-The-Way/feat/mario-integration
31809fa
unverified

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refactor: centralize embedding configuration in Settings
20c7bad

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fix(rag): address remaining CodeRabbit feedback
2f0030b

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refactor: address CodeRabbit review feedback for Mario integration
cbd94a4

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fix(rag): use get_content() for BaseNode compatibility
3f90da8

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fix(rag): apply lazy imports and use centralized config
055a3a7

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feat: Integrate Mario's Modal code execution + LlamaIndex RAG
3aa91e9

VibecoderMcSwaggins Mario commited on

Merge pull request #15 from The-Obstacle-Is-The-Way/feat/phase10-clinicaltrials
17bd211
unverified

VibecoderMcSwaggins commited on

refactor: address CodeRabbit nitpicks for Phase 10
1bc9785

VibecoderMcSwaggins commited on

chore: Update httpx dependency and remove unused extras in pyproject.toml and uv.lock
1efef06

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feat: Implement Phase 10 (ClinicalTrials.gov) with requests
4e2ccbf

VibecoderMcSwaggins commited on

feat: Complete Phase 9 Source Cleanup (Remove WebTool) (#14)
cd004e1

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feat(docs): update implementation roadmap and add specs for Phases 9-11
3fcd8e7

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Merge pull request #13 from The-Obstacle-Is-The-Way/dev
388cd05

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fix(report): add explicit JSON structure guidance in prompt
d01e70d

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refactor(examples): apply CodeRabbit feedback (validations, complexity, formatting)
cd11dad

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refactor(examples): purge all mocks - real API calls only
cfb473d

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feat(examples): add Phase 6-8 demos for full stack demonstration
0efdc2f

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fix: address all CodeRabbit Phase 8 review feedback
f1e4e5b

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fix: apply lazy init pattern and pydantic-ai fixes to ReportAgent (#12)
3139749

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Merge pull request #11 from The-Obstacle-Is-The-Way/feat/phase7-hypothesis-agent
e993253

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fix: mock get_model in tests to avoid API key requirement in CI
ebc6429

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fix: address CodeRabbit Phase 7 review feedback
bc74531

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feat(phase7): implement Hypothesis Agent for mechanistic reasoning
c690006

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Merge pull request #10 from The-Obstacle-Is-The-Way/feat/phase6-embeddings
b25ffdb

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fix: address CodeRabbit Phase 6 review feedback
506a9c0

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fix: address CodeRabbit Phase 5 review feedback
d247864

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feat(phase6): Embeddings & Semantic Search implementation
3bacbf8

VibecoderMcSwaggins commited on

docs: comprehensive Phase 6-8 spec revisions (Senior Architect audit)
ec3d7dc

VibecoderMcSwaggins commited on

feat(architecture): update system design and roadmap for Phases 1-8
2dc022a

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