direct render

app.py

@@ -10,8 +10,6 @@ from matplotlib import cm
 import ibis
 from ibis import _
 
-from huggingface_hub import HfApi, login
-
 from langchain_openai import ChatOpenAI 
 from langchain_community.utilities import SQLDatabase
 from langchain.chains import create_sql_query_chain
@@ -33,7 +31,6 @@ gbif_h3 = con.read_parquet(h3_parquet, "gbif_h3")
 
 
 
-login(st.secrets["HF_TOKEN"])
 
 
 
@@ -126,21 +123,22 @@ def host_df(df, filename = "live.json", repo_id="boettiger-lab/gbif"):
     # to avoid cache, use unique commit url
     commit_hash = info.oid
     return  f"https://huggingface.co/datasets/{repo_id}/resolve/{commit_hash}/live/{filename}"
-    
+
+import pydeck as pdk
 def hex_layer(m, df: pd.DataFrame, v_scale = 1):
-    url = host_df(df)
-    
-    deck_grid_layer = {
-        "@@type": "H3HexagonLayer",
-        "id": "my-layer",
-        "data": url,
-        "getHexagon": "@@=hex",
-        "getFillColor": "@@=rgb",
-        "getElevation": "@@=normalized_values",
-        "elevationScale": 5000 * 10 ** v_scale,
-        "elevationRange": [0,1],
-    }
-    return m.add_deck_layers([deck_grid_layer])
+
+    layer = pdk.Layer(
+        "H3HexagonLayer",
+        df,
+        get_hexagon="hex",
+        get_fill_color="rgb",
+        extruded=True,
+        get_elevation="normalized_values",
+        elevation_scale= 5000 * 10 ** v_scale,
+        elevation_range = [0,1]
+    )
+ 
+    return m.add_deck_layers([layer])
 
 
 # +

requirements.txt

@@ -1,18 +1,159 @@
+aiohappyeyeballs==2.4.0
+aiohttp==3.10.5
+aiosignal==1.3.1
+altair==5.4.1
+annotated-types==0.7.0
+anyio==4.4.0
+anywidget==0.9.13
+appdirs==1.4.4
+asgiref==3.8.1
+asttokens==2.4.1
+async-timeout==4.0.3
+atpublic==5.0
+attrs==24.2.0
+beautifulsoup4==4.12.3
+blinker==1.8.2
+bqplot==0.12.43
+branca==0.7.2
+cachetools==5.5.0
+certifi==2024.8.30
+charset-normalizer==3.3.2
+click==8.1.7
+colour==0.1.5
+comm==0.2.2
+contourpy==1.3.0
+cycler==0.12.1
+dataclasses-json==0.6.7
+decorator==5.1.1
+distro==1.9.0
 duckdb==1.0.0
+duckdb_engine==0.13.1
+exceptiongroup==1.2.2
+executing==2.0.1
+filelock==3.15.4
+folium==0.17.0
+fonttools==4.53.1
+frozenlist==1.4.1
+gdown==5.2.0
+geojson==3.1.0
+geopandas==1.0.1
+gitdb==4.0.11
+GitPython==3.1.43
+greenlet==3.0.3
+h11==0.14.0
+htmltools==0.5.3
+httpcore==1.0.5
+httpx==0.27.2
+ibis-framework==9.4.0
+idna==3.8
+ipyevents==2.0.2
+ipyfilechooser==0.6.0
+ipyleaflet==0.19.2
+ipython==8.18.0
+ipytree==0.2.2
+ipyvue==1.11.1
+ipyvuetify==1.10.0
+ipywidgets==8.1.5
+jedi==0.19.1
+Jinja2==3.1.4
+jiter==0.5.0
+jsonpatch==1.33
+jsonpointer==3.0.0
+jsonschema==4.23.0
+jsonschema-specifications==2023.12.1
+jupyter-leaflet==0.19.2
+jupyterlab_widgets==3.0.13
+kiwisolver==1.4.6
+langchain==0.2.16
+langchain-community==0.2.16
+langchain-core==0.2.38
+langchain-openai==0.1.23
+langchain-text-splitters==0.2.4
+langsmith==0.1.110
+leafmap==0.37.1
+linkify-it-py==2.0.3
+maplibre @ git+https://github.com/eodaGmbH/py-maplibregl@f7a514d4db1d7df06f70c293be9e4f9f1bc23c12
+markdown-it-py==3.0.0
+MarkupSafe==2.1.5
+marshmallow==3.22.0
+matplotlib==3.9.2
+matplotlib-inline==0.1.7
+mdit-py-plugins==0.4.1
+mdurl==0.1.2
+multidict==6.0.5
+mypy-extensions==1.0.0
+narwhals==1.6.2
+numpy==1.26.4
+openai==1.43.0
+orjson==3.10.7
+packaging==24.1
 pandas==2.2.2
-git+https://github.com/eodaGmbH/py-maplibregl@v0.2.6.1-pre-release
-leafmap[maplibre]
-ibis-framework[duckdb]==9.1.0
-streamlit==1.35.0
-streamlit_folium==0.20.0
-altair==5.3.0
+parso==0.8.4
+parsy==2.1
+pexpect==4.9.0
+pillow==10.4.0
+plotly==5.24.0
+prompt-toolkit==3.0.36
+protobuf==5.28.0
+psygnal==0.11.1
+ptyprocess==0.7.0
+pure_eval==0.2.3
+pyarrow==17.0.0
+pyarrow-hotfix==0.6
+pydantic==2.8.2
+pydantic_core==2.20.1
+pydeck==0.9.1
+Pygments==2.18.0
+pyogrio==0.9.0
+pyparsing==3.1.4
+pyproj==3.6.1
+pyshp==2.3.1
+PySocks==1.7.1
+pystac==1.10.1
+pystac-client==0.8.3
+python-box==7.2.0
+python-dateutil==2.9.0.post0
+python-multipart==0.0.9
+pytz==2024.1
+PyYAML==6.0.2
+questionary==2.0.1
 referencing==0.35.1
-rasterio==1.3.10
-shapely==2.0.4
-shiny==0.10.2
-huggingface_hub
-duckdb-engine
-langchain
-langchain-community
-langchain-openai
-streamlit
+regex==2024.7.24
+requests==2.32.3
+rich==13.8.0
+rpds-py==0.20.0
+scooby==0.10.0
+shapely==2.0.6
+shiny==1.0.0
+six==1.16.0
+smmap==5.0.1
+sniffio==1.3.1
+soupsieve==2.6
+SQLAlchemy==2.0.33
+sqlglot==25.18.0
+stack-data==0.6.3
+starlette==0.38.2
+streamlit==1.38.0
+tenacity==8.5.0
+tiktoken==0.7.0
+toml==0.10.2
+toolz==0.12.1
+tornado==6.4.1
+tqdm==4.66.5
+traitlets==5.14.3
+traittypes==0.2.1
+typing-inspect==0.9.0
+typing_extensions==4.12.2
+tzdata==2024.1
+uc-micro-py==1.0.3
+urllib3==2.2.2
+uvicorn==0.30.6
+watchdog==4.0.2
+watchfiles==0.24.0
+wcwidth==0.2.13
+websockets==13.0.1
+whitebox==2.3.5
+whiteboxgui==2.3.0
+widgetsnbextension==4.0.13
+xyzservices==2024.9.0
+yarl==1.9.7