| [ |
| { |
| "name": "gc_percent", |
| "description": "Compute GC% of a nucleotide sequence.", |
| "input_schema": { |
| "type": "object", |
| "properties": { |
| "seq": { |
| "type": "string" |
| } |
| }, |
| "required": [ |
| "seq" |
| ] |
| } |
| }, |
| { |
| "name": "tm_wallace", |
| "description": "Estimate DNA oligo melting temperature (Wallace rule).", |
| "input_schema": { |
| "type": "object", |
| "properties": { |
| "seq": { |
| "type": "string" |
| } |
| }, |
| "required": [ |
| "seq" |
| ] |
| } |
| }, |
| { |
| "name": "revcomp", |
| "description": "Return reverse complement of a DNA/RNA sequence.", |
| "input_schema": { |
| "type": "object", |
| "properties": { |
| "seq": { |
| "type": "string" |
| } |
| }, |
| "required": [ |
| "seq" |
| ] |
| } |
| }, |
| { |
| "name": "translate", |
| "description": "Translate coding DNA to amino acids.", |
| "input_schema": { |
| "type": "object", |
| "properties": { |
| "seq": { |
| "type": "string" |
| }, |
| "frame": { |
| "type": "integer", |
| "description": "0,1,2" |
| } |
| }, |
| "required": [ |
| "seq" |
| ] |
| } |
| }, |
| { |
| "name": "kmer_count", |
| "description": "Count k-mers in a nucleotide sequence.", |
| "input_schema": { |
| "type": "object", |
| "properties": { |
| "seq": { |
| "type": "string" |
| }, |
| "k": { |
| "type": "integer" |
| } |
| }, |
| "required": [ |
| "seq", |
| "k" |
| ] |
| } |
| }, |
| { |
| "name": "find_orfs", |
| "description": "Find ORFs with minimum amino-acid length.", |
| "input_schema": { |
| "type": "object", |
| "properties": { |
| "seq": { |
| "type": "string" |
| }, |
| "min_aa": { |
| "type": "integer" |
| } |
| }, |
| "required": [ |
| "seq" |
| ] |
| } |
| } |
| ] |
