/*
 * The Exomiser - A tool to annotate and prioritize genomic variants
 *
 * Copyright (c) 2016-2017 Queen Mary University of London.
 * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd.
 *
 * This program is free software: you can redistribute it and/or modify
 * it under the terms of the GNU Affero General Public License as
 * published by the Free Software Foundation, either version 3 of the
 * License, or (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU Affero General Public License for more details.
 *
 * You should have received a copy of the GNU Affero General Public License
 * along with this program.  If not, see <http://www.gnu.org/licenses/>.
 */

package org.monarchinitiative.exomiser.core.model;

/**
 * @author Jules Jacobsen <jules.jacobsen@sanger.ac.uk>
 */
public interface ChromosomalRegion {

    int getChromosome();

    int getStart();

    int getEnd();
}

/*
 * The Exomiser - A tool to annotate and prioritize genomic variants
 *
 * Copyright (c) 2016-2018 Queen Mary University of London.
 * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd.
 *
 * This program is free software: you can redistribute it and/or modify
 * it under the terms of the GNU Affero General Public License as
 * published by the Free Software Foundation, either version 3 of the
 * License, or (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU Affero General Public License for more details.
 *
 * You should have received a copy of the GNU Affero General Public License
 * along with this program.  If not, see <http://www.gnu.org/licenses/>.
 */

package org.monarchinitiative.exomiser.core.model;

/**
 * @author Jules Jacobsen <jules.jacobsen@sanger.ac.uk>
 */
public interface ChromosomalRegion extends Comparable<ChromosomalRegion> {

    int getChromosome();

    int getStart();

    int getEnd();

    @Override
    default int compareTo(ChromosomalRegion other) {
        int chr = this.getChromosome();
        int otherChr = other.getChromosome();
        if (chr != otherChr) {
            return Integer.compare(chr, otherChr);
        }

        int start = this.getStart();
        int otherStart = other.getStart();
        if (start != otherStart) {
            return Integer.compare(start, otherStart);
        }

        return Integer.compare(this.getEnd(), other.getEnd());
    }
}

Implement Comparable in ChromosomalRegion