/**
 * Licensed to the Apache Software Foundation (ASF) under one or more
 * contributor license agreements.  See the NOTICE file distributed with
 * this work for additional information regarding copyright ownership.
 * The ASF licenses this file to You under the Apache License, Version 2.0
 * (the "License"); you may not use this file except in compliance with
 * the License.  You may obtain a copy of the License at
 *
 *     http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 */
package org.dia.red.ctakes.spark;

import java.util.List;

import org.apache.spark.SparkConf;
import org.apache.spark.api.java.JavaRDD;
import org.apache.spark.api.java.JavaSparkContext;
import org.apache.spark.api.java.function.Function;
import org.apache.spark.api.java.function.VoidFunction;
import org.apache.spark.storage.StorageLevel;


/**
 * @author Selina Chu, Michael Starch, and Giuseppe Totaro
 *
 */
public class CtakesSparkMain {

	/**
	 * @param args
	 */
	public static void main(String[] args) {
		//args[0] holds file name 
		SparkConf conf = new SparkConf();
		conf.setAppName("ctakes-demo");
		conf.setMaster("local[*]");
		JavaSparkContext sc = new JavaSparkContext(conf);
				
		JavaRDD<String> note = sc.textFile("hdfs:///tmp/testdata100.txt"); //jdfs:// adls://
		JavaRDD<String> output = note.map(new CtakesFunction());
				
		//save output to hdfs
		//output.saveAsTextFile("file:///usr/local/SparkStreamingCTK/test_output.txt");
		sc.close();
	}

}

/**
 * Licensed to the Apache Software Foundation (ASF) under one or more
 * contributor license agreements.  See the NOTICE file distributed with
 * this work for additional information regarding copyright ownership.
 * The ASF licenses this file to You under the Apache License, Version 2.0
 * (the "License"); you may not use this file except in compliance with
 * the License.  You may obtain a copy of the License at
 *
 *     http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 */
package org.dia.red.ctakes.spark;

import java.util.List;

import org.apache.spark.SparkConf;
import org.apache.spark.api.java.JavaRDD;
import org.apache.spark.api.java.JavaSparkContext;
import org.apache.spark.api.java.function.Function;
import org.apache.spark.api.java.function.VoidFunction;
import org.apache.spark.storage.StorageLevel;


/**
 * @author Selina Chu, Michael Starch, and Giuseppe Totaro
 *
 */
public class CtakesSparkMain {

	/**
	 * @param args
	 */
	public static void main(String[] args) {
		//args[0] holds file name 
		SparkConf conf = new SparkConf();
		conf.setAppName("ctakes-demo");
		conf.setMaster("local[*]");
		JavaSparkContext sc = new JavaSparkContext(conf);
				
		JavaRDD<String> note = sc.textFile("hdfs:///tmp/testdata100.txt"); //jdfs:// adls://
		JavaRDD<String> output = note.map(new CtakesFunction());
				
		//save output to hdfs
		//output.saveAsTextFile("file:///tmp/testdata100.out/");
		sc.close();
	}

}

Handle saving output correctly