/**
 * Copyright © 2011-2013 EMBL - European Bioinformatics Institute
 * 
 * Licensed under the Apache License, Version 2.0 (the "License"); 
 * you may not use this file except in compliance with the License.  
 * You may obtain a copy of the License at
 *
 *     http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 */
package uk.ac.ebi.phenotype.dao;

/**
 *
 * Strain data access manager interface.
 * 
 * @author Gautier Koscielny (EMBL-EBI) <koscieln@ebi.ac.uk>
 * @since February 2012
 */

import java.util.List;

import uk.ac.ebi.phenotype.pojo.Strain;

public interface StrainDAO extends HibernateDAO {

	public List<Strain> getAllStrains();

	/**
	 * Find a strain by its nane.
	 * @param name the strain name
	 * @return the strain
	 */
	public Strain getStrainByName(String name);	

	/**
	 * Find a strain by its name or synonym.
	 * @param name the strain name or synonym
	 * @return the strain
	 */
	public Strain getStrainBySynonym(String name);	

	/**
	 * Save a strain
	 * @param strain the strain to save
	 */
	public void saveStrain(Strain strain);
}

/**
 * Copyright © 2011-2013 EMBL - European Bioinformatics Institute
 * 
 * Licensed under the Apache License, Version 2.0 (the "License"); 
 * you may not use this file except in compliance with the License.  
 * You may obtain a copy of the License at
 *
 *     http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 */
package uk.ac.ebi.phenotype.dao;

/**
 *
 * Strain data access manager interface.
 * 
 * @author Gautier Koscielny (EMBL-EBI) <koscieln@ebi.ac.uk>
 * @since February 2012
 */

import java.util.List;

import uk.ac.ebi.phenotype.pojo.Allele;
import uk.ac.ebi.phenotype.pojo.Strain;

public interface StrainDAO extends HibernateDAO {

	public List<Strain> getAllStrains();

	/**
	 * Find a strain by its nane.
	 * @param name the strain name
	 * @return the strain
	 */
	public Strain getStrainByName(String name);	

	/**
	 * Find a strain by its name or synonym.
	 * @param name the strain name or synonym
	 * @return the strain
	 */
	public Strain getStrainBySynonym(String name);	

	/**
	 * Save a strain
	 * @param strain the strain to save
	 */
	public void saveStrain(Strain strain);

	public Strain getStrainByAcc(String strain);
}

add method to get strain by accession