iitanish/nppe2-protein-structure-ensemble

NPPE2 Protein Secondary Structure Prediction - Ensemble Model

Model Description

This is an ensemble of three deep learning models for protein secondary structure prediction, achieving 0.469 F1 score on the NPPE-II test set.

Key Achievement 🎯

Fixed Critical Bug: Q3 class 'C' (representing 42% of training data) was incorrectly mapped to index 0, causing it to be ignored by the loss function.

Citation

@misc{nppe2-protein-ensemble-2025, title={NPPE2 Protein Secondary Structure Prediction Ensemble}, author={IIT Madras BS Programme Student}, year={2025}, howpublished={\url{https://huggingface.co/YOUR_USERNAME/nppe2-protein-ensemble}}, note={Assignment submission for NPPE-II course} }

License

MIT License