Daily Papers

We present the first release of SmartWilds, a multimodal wildlife monitoring dataset. SmartWilds is a synchronized collection of drone imagery, camera trap photographs and videos, and bioacoustic recordings collected during summer 2025 at The Wilds safari park in Ohio. This dataset supports multimodal AI research for comprehensive environmental monitoring, addressing critical needs in endangered species research, conservation ecology, and habitat management. Our pilot deployment captured four days of synchronized monitoring across three modalities in a 220-acre pasture containing Pere David's deer, Sichuan takin, Przewalski's horses, as well as species native to Ohio, including bald eagles, white-tailed deer, and coyotes. We provide a comparative analysis of sensor modality performance, demonstrating complementary strengths for landuse patterns, species detection, behavioral analysis, and habitat monitoring. This work establishes reproducible protocols for multimodal wildlife monitoring while contributing open datasets to advance conservation computer vision research. Future releases will include synchronized GPS tracking data from tagged individuals, citizen science data, and expanded temporal coverage across multiple seasons.

The alarming decline in global biodiversity, driven by various factors, underscores the urgent need for large-scale wildlife monitoring. In response, scientists have turned to automated deep learning methods for data processing in wildlife monitoring. However, applying these advanced methods in real-world scenarios is challenging due to their complexity and the need for specialized knowledge, primarily because of technical challenges and interdisciplinary barriers. To address these challenges, we introduce Pytorch-Wildlife, an open-source deep learning platform built on PyTorch. It is designed for creating, modifying, and sharing powerful AI models. This platform emphasizes usability and accessibility, making it accessible to individuals with limited or no technical background. It also offers a modular codebase to simplify feature expansion and further development. Pytorch-Wildlife offers an intuitive, user-friendly interface, accessible through local installation or Hugging Face, for animal detection and classification in images and videos. As two real-world applications, Pytorch-Wildlife has been utilized to train animal classification models for species recognition in the Amazon Rainforest and for invasive opossum recognition in the Galapagos Islands. The Opossum model achieves 98% accuracy, and the Amazon model has 92% recognition accuracy for 36 animals in 90% of the data. As Pytorch-Wildlife evolves, we aim to integrate more conservation tasks, addressing various environmental challenges. Pytorch-Wildlife is available at https://github.com/microsoft/CameraTraps.

Camera traps have become a common tool for wildlife monitoring efforts in ecological research and biodiversity conservation. Wildlife classification models have benefited from the increase in wildlife visual data. These models reach high levels of accuracy on curated, high-quality datasets. However, their performance remains sensitive to real-world environmental constraints. They often produce inconsistent predictions when performing inference on temporally coherent sequences. The predicted label for a single individual shifts rapidly between frames. This study exploits the temporal nature of camera-trap data to augment inferred predictions from a wildlife classification model. Specifically, we adopt several standard Multi-Object Tracking (MOT) models to link detections across consecutive frames. The curated trajectories are used to fuse the softmax class probabilities. The fused probability score produces a single consensus class label estimate that overrides misclassifications caused by noise. The analysis of the experimental results shows that our proposed strategy improves over a standalone classifier over all datasets and for each metric. Specifically, the best-performing MOT models gain a weighted F1-Score of 5.1%, 3.1% and 2.0% over the classifier across three MOT datasets.

Biodiversity plays a crucial role in maintaining the balance of the ecosystem. However, poaching and unintentional human activities contribute to the decline in the population of many species. Hence, active monitoring is required to preserve these endangered species. Current human-led monitoring techniques are prone to errors and are labor-intensive. Therefore, we study the application of deep learning methods like Convolutional Neural Networks (CNNs) and transfer learning, which can aid in automating the process of monitoring endangered species. For this, we create our custom dataset utilizing trustworthy online databases like iNaturalist and ZooChat. To choose the best model for our use case, we compare the performance of different architectures like DenseNet, ResNet, VGGNet, and YOLOv8 on the custom wildlife dataset. Transfer learning reduces training time by freezing the pre-trained weights and replacing only the output layer with custom, fully connected layers designed for our dataset. Our results indicate that YOLOv8 performs better, achieving a training accuracy of 97.39 % and an F1 score of 96.50 %, surpassing other models. Our findings suggest that integrating YOLOv8 into conservation efforts could revolutionize wildlife monitoring with its high accuracy and efficiency, potentially transforming how endangered species are monitored and protected worldwide.

Individual animal re-identification from camera-trap imagery is an instance retrieval problem central to non-invasive wildlife monitoring: a query image must retrieve the correct individual from a reference set of known animals. This requires computer vision models to recognize distinctive local patterns in fur, skin, or other visual markings. Current approaches either learn global embeddings as a classification problem, requiring many labeled images per individual while largely ignoring local evidence, or apply off-the-shelf, domain-agnostic image matchers. Although such matchers are pretrained on large and diverse image collections, adapting them to wildlife imagery is challenging because available datasets are small and lack correspondence-level annotations. We study weakly supervised adaptation of a pretrained keypoint matcher using only identity labels, without keypoint-level or geometric correspondence ground truth. We mine informative image pairs with the pretrained matcher, derive weak positive and negative supervision from identity agreement, and contrastively fine-tune the matching network to strengthen correspondences for same-identity pairs and suppress them for different identities. Across open-source wildlife re-identification datasets, our approach improves accuracy over off-the-shelf matchers and a state-of-the-art local--global fusion method. Under an open-world protocol with held-out individuals, it learns a transferable correspondence prior rather than memorizing training identities. To our knowledge, this is the first study of matcher-level, identity-supervised adaptation for animal re-identification. Our method enables data-efficient specialization of image matching models to wildlife domains using identity annotations already available in typical monitoring datasets.

Camera traps are revolutionising wildlife monitoring by capturing vast amounts of visual data; however, the manual identification of individual animals remains a significant bottleneck. This study introduces a fully self-supervised approach to learning robust chimpanzee face embeddings from unlabeled camera-trap footage. Leveraging the DINOv2 framework, we train Vision Transformers on automatically mined face crops, eliminating the need for identity labels. Our method demonstrates strong open-set re-identification performance, surpassing supervised baselines on challenging benchmarks such as Bossou, despite utilising no labelled data during training. This work underscores the potential of self-supervised learning in biodiversity monitoring and paves the way for scalable, non-invasive population studies.

Models trained on one set of domains often suffer performance drops on unseen domains, e.g., when wildlife monitoring models are deployed in new camera locations. In this work, we study principles for designing data augmentations for out-of-domain (OOD) generalization. In particular, we focus on real-world scenarios in which some domain-dependent features are robust, i.e., some features that vary across domains are predictive OOD. For example, in the wildlife monitoring application above, image backgrounds vary across camera locations but indicate habitat type, which helps predict the species of photographed animals. Motivated by theoretical analysis on a linear setting, we propose targeted augmentations, which selectively randomize spurious domain-dependent features while preserving robust ones. We prove that targeted augmentations improve OOD performance, allowing models to generalize better with fewer domains. In contrast, existing approaches such as generic augmentations, which fail to randomize domain-dependent features, and domain-invariant augmentations, which randomize all domain-dependent features, both perform poorly OOD. In experiments on three real-world datasets, we show that targeted augmentations set new states-of-the-art for OOD performance by 3.2-15.2%.

Automated classification of animal vocalisations is a potentially powerful wildlife monitoring tool. Training robust classifiers requires sizable annotated datasets, which are not easily recorded in the wild. To circumvent this problem, we recorded four primate species under semi-natural conditions in a wildlife sanctuary in Cameroon with the objective to train a classifier capable of detecting species in the wild. Here, we introduce the collected dataset, describe our approach and initial results of classifier development. To increase the efficiency of the annotation process, we condensed the recordings with an energy/change based automatic vocalisation detection. Segmenting the annotated chunks into training, validation and test sets, initial results reveal up to 82% unweighted average recall (UAR) test set performance in four-class primate species classification.

Camera traps have become an essential tool for wildlife monitoring, motivating the development of computer vision methods for the automated extraction of information from these data. While most prior work has focused on species identification, many ecological applications also require estimating the number of unique individuals appearing across short image sequences. This task is particularly challenging because camera traps typically acquire bursts of images at approximately one frame per second, creating large temporal discontinuities that may make conventional multi-object tracking methods unreliable, and because manually collecting individual count annotations is prohibitively expensive. In this work, we describe the winning solution to the iWildCam 2021 Challenge, which introduced a benchmark for counting animals at the sequence level under realistic annotation constraints where count annotations are unavailable for training. Our approach, MaxBoxCount, combines a strong species classification pipeline with a simple yet effective counting heuristic based on MegaDetector detections to estimate the number of unique individuals without requiring count annotations. Code is available at https://github.com/alcunha/iwildcam2021ufam.

Real-time wildlife detection in drone imagery is critical for numerous applications, including animal ecology, conservation, and biodiversity monitoring. Low-altitude drone missions are effective for collecting fine-grained animal movement and behavior data, particularly if missions are automated for increased speed and consistency. However, little work exists on evaluating computer vision models on low-altitude aerial imagery and generalizability across different species and settings. To fill this gap, we present a novel multi-environment, multi-species, low-altitude aerial footage (MMLA) dataset. MMLA consists of drone footage collected across three diverse environments: Ol Pejeta Conservancy and Mpala Research Centre in Kenya, and The Wilds Conservation Center in Ohio, which includes five species: Plains zebras, Grevy's zebras, giraffes, onagers, and African Painted Dogs. We comprehensively evaluate three YOLO models (YOLOv5m, YOLOv8m, and YOLOv11m) for detecting animals. Results demonstrate significant performance disparities across locations and species-specific detection variations. Our work highlights the importance of evaluating detection algorithms across different environments for robust wildlife monitoring applications using drones.

Recent work has established the ecological importance of developing algorithms for identifying animals individually from images. Typically, a separate algorithm is trained for each species, a natural step but one that creates significant barriers to wide-spread use: (1) each effort is expensive, requiring data collection, data curation, and model training, deployment, and maintenance, (2) there is little training data for many species, and (3) commonalities in appearance across species are not exploited. We propose an alternative approach focused on training multi-species individual identification (re-id) models. We construct a dataset that includes 49 species, 37K individual animals, and 225K images, using this data to train a single embedding network for all species. Our model employs an EfficientNetV2 backbone and a sub-center ArcFace loss function with dynamic margins. We evaluate the performance of this multispecies model in several ways. Most notably, we demonstrate that it consistently outperforms models trained separately on each species, achieving an average gain of 12.5% in top-1 accuracy. Furthermore, the model demonstrates strong zero-shot performance and fine-tuning capabilities for new species with limited training data, enabling effective curation of new species through both incremental addition of data to the training set and fine-tuning without the original data. Additionally, our model surpasses the recent MegaDescriptor on unseen species, averaging an 19.2% top-1 improvement per species and showing gains across all 33 species tested. The fully-featured code repository is publicly available on GitHub, and the feature extractor model can be accessed on HuggingFace for seamless integration with wildlife re-identification pipelines. The model is already in production use for 60+ species in a large-scale wildlife monitoring system.

Visual animal biometrics is rapidly gaining popularity as it enables a non-invasive and cost-effective approach for wildlife monitoring applications. Widespread usage of camera traps has led to large volumes of collected images, making manual processing of visual content hard to manage. In this work, we develop a framework for automatic detection and recognition of individuals in different patterned species like tigers, zebras and jaguars. Most existing systems primarily rely on manual input for localizing the animal, which does not scale well to large datasets. In order to automate the detection process while retaining robustness to blur, partial occlusion, illumination and pose variations, we use the recently proposed Faster-RCNN object detection framework to efficiently detect animals in images. We further extract features from AlexNet of the animal's flank and train a logistic regression (or Linear SVM) classifier to recognize the individuals. We primarily test and evaluate our framework on a camera trap tiger image dataset that contains images that vary in overall image quality, animal pose, scale and lighting. We also evaluate our recognition system on zebra and jaguar images to show generalization to other patterned species. Our framework gives perfect detection results in camera trapped tiger images and a similar or better individual recognition performance when compared with state-of-the-art recognition techniques.

We propose a label-free approach to adapt powerful but generic vision foundation models to specialized scientific domains. Standard supervised fine-tuning is often ill-suited to these settings: labels are scarce, and task-specific training can collapse the model's generality and hurt robustness. We instead leverage metadata to adapt representations to new domains in a self-supervised manner. Our method, FINO, combines a standard self-supervised objective with flexible metadata guidance that handles both highly granular discrete metadata and continuous metadata. It encourages the representation to preserve informative factors while suppressing spurious ones. Across subcellular fluorescence microscopy, Earth observation, wildlife monitoring, and medical imaging, FINO consistently outperforms standard unsupervised domain adaptation and fully supervised adaptation. It also exceeds highly-specialized domain-specific state of the art, while using no task labels for backbone adaptation and only lightweight probes for supervision.

In this paper, we present WildlifeDatasets (https://github.com/WildlifeDatasets/wildlife-datasets) - an open-source toolkit intended primarily for ecologists and computer-vision / machine-learning researchers. The WildlifeDatasets is written in Python, allows straightforward access to publicly available wildlife datasets, and provides a wide variety of methods for dataset pre-processing, performance analysis, and model fine-tuning. We showcase the toolkit in various scenarios and baseline experiments, including, to the best of our knowledge, the most comprehensive experimental comparison of datasets and methods for wildlife re-identification, including both local descriptors and deep learning approaches. Furthermore, we provide the first-ever foundation model for individual re-identification within a wide range of species - MegaDescriptor - that provides state-of-the-art performance on animal re-identification datasets and outperforms other pre-trained models such as CLIP and DINOv2 by a significant margin. To make the model available to the general public and to allow easy integration with any existing wildlife monitoring applications, we provide multiple MegaDescriptor flavors (i.e., Small, Medium, and Large) through the HuggingFace hub (https://huggingface.co/BVRA).

Wildlife observation plays an important role in biodiversity conservation, necessitating robust methodologies for monitoring wildlife populations and interspecies interactions. Recent advances in computer vision have significantly contributed to automating fundamental wildlife observation tasks, such as animal detection and species identification. However, accurately identifying species from indirect evidence like footprints and feces remains relatively underexplored, despite its importance in contributing to wildlife monitoring. To bridge this gap, we introduce AnimalClue, the first large-scale dataset for species identification from images of indirect evidence. Our dataset consists of 159,605 bounding boxes encompassing five categories of indirect clues: footprints, feces, eggs, bones, and feathers. It covers 968 species, 200 families, and 65 orders. Each image is annotated with species-level labels, bounding boxes or segmentation masks, and fine-grained trait information, including activity patterns and habitat preferences. Unlike existing datasets primarily focused on direct visual features (e.g., animal appearances), AnimalClue presents unique challenges for classification, detection, and instance segmentation tasks due to the need for recognizing more detailed and subtle visual features. In our experiments, we extensively evaluate representative vision models and identify key challenges in animal identification from their traces. Our dataset and code are available at https://dahlian00.github.io/AnimalCluePage/

Thermal imaging is crucial for night vision but fundamentally hampered by the ghosting effect, a loss of detailed texture in cluttered photon streams. While conventional ghosting mitigation has relied on data post-processing, the recent breakthrough in heat-assisted detection and ranging (HADAR) opens a promising frontier for hyperspectral computational thermal imaging that produces night vision with day-like visibility. However, universal anti-ghosting imaging remains elusive, as state-of-the-art HADAR applies only to limited scenes with uniform materials, whereas material non-uniformity is ubiquitous in the real world. Here, we propose a universal computational thermal imaging framework, TAG (thermal anti-ghosting), to address material non-uniformity and overcome ghosting for high-fidelity night vision. TAG takes hyperspectral photon streams for nonparametric texture recovery, enabling our experimental demonstration of unprecedented expression recovery in thus-far-elusive ghostly human faces -- the archetypal, long-recognized ghosting phenomenon. Strikingly, TAG not only universally outperforms HADAR across various scenes, but also reveals the influence of material non-uniformity, shedding light on HADAR's effectiveness boundary. We extensively test facial texture and expression recovery across day and night, and demonstrate, for the first time, thermal 3D topological alignment and mood detection. This work establishes a universal foundation for high-fidelity computational night vision, with potential applications in autonomous navigation, reconnaissance, healthcare, and wildlife monitoring.

Distribution shifts -- where the training distribution differs from the test distribution -- can substantially degrade the accuracy of machine learning (ML) systems deployed in the wild. Despite their ubiquity in the real-world deployments, these distribution shifts are under-represented in the datasets widely used in the ML community today. To address this gap, we present WILDS, a curated benchmark of 10 datasets reflecting a diverse range of distribution shifts that naturally arise in real-world applications, such as shifts across hospitals for tumor identification; across camera traps for wildlife monitoring; and across time and location in satellite imaging and poverty mapping. On each dataset, we show that standard training yields substantially lower out-of-distribution than in-distribution performance. This gap remains even with models trained by existing methods for tackling distribution shifts, underscoring the need for new methods for training models that are more robust to the types of distribution shifts that arise in practice. To facilitate method development, we provide an open-source package that automates dataset loading, contains default model architectures and hyperparameters, and standardizes evaluations. Code and leaderboards are available at https://wilds.stanford.edu.

Effective monitoring of wildlife is critical for assessing biodiversity and ecosystem health, as declines in key species often signal significant environmental changes. Birds, particularly ground-nesting species, serve as important ecological indicators due to their sensitivity to environmental pressures. Camera traps have become indispensable tools for monitoring nesting bird populations, enabling data collection across diverse habitats. However, the manual processing and analysis of such data are resource-intensive, often delaying the delivery of actionable conservation insights. This study presents an AI-driven approach for real-time species detection, focusing on the curlew (Numenius arquata), a ground-nesting bird experiencing significant population declines. A custom-trained YOLOv10 model was developed to detect and classify curlews and their chicks using 3/4G-enabled cameras linked to the Conservation AI platform. The system processes camera trap data in real-time, significantly enhancing monitoring efficiency. Across 11 nesting sites in Wales, the model achieved high performance, with a sensitivity of 90.56%, specificity of 100%, and F1-score of 95.05% for curlew detections, and a sensitivity of 92.35%, specificity of 100%, and F1-score of 96.03% for curlew chick detections. These results demonstrate the capability of AI-driven monitoring systems to deliver accurate, timely data for biodiversity assessments, facilitating early conservation interventions and advancing the use of technology in ecological research.

Wildlife populations in Africa face severe threats, with vertebrate numbers declining by over 65% in the past five decades. In response, image classification using deep learning has emerged as a promising tool for biodiversity monitoring and conservation. This paper presents a comparative study of deep learning models for automatically classifying African wildlife images, focusing on transfer learning with frozen feature extractors. Using a public dataset of four species: buffalo, elephant, rhinoceros, and zebra; we evaluate the performance of DenseNet-201, ResNet-152, EfficientNet-B4, and Vision Transformer ViT-H/14. DenseNet-201 achieved the best performance among convolutional networks (67% accuracy), while ViT-H/14 achieved the highest overall accuracy (99%), but with significantly higher computational cost, raising deployment concerns. Our experiments highlight the trade-offs between accuracy, resource requirements, and deployability. The best-performing CNN (DenseNet-201) was integrated into a Hugging Face Gradio Space for real-time field use, demonstrating the feasibility of deploying lightweight models in conservation settings. This work contributes to African-grounded AI research by offering practical insights into model selection, dataset preparation, and responsible deployment of deep learning tools for wildlife conservation.

A comprehensive understanding of animal behavior ecology depends on scalable approaches to quantify and interpret complex, multidimensional behavioral patterns. Traditional field observations are often limited in scope, time-consuming, and labor-intensive, hindering the assessment of behavioral responses across landscapes. To address this, we present kabr-tools (Kenyan Animal Behavior Recognition Tools), an open-source package for automated multi-species behavioral monitoring. This framework integrates drone-based video with machine learning systems to extract behavioral, social, and spatial metrics from wildlife footage. Our pipeline leverages object detection, tracking, and behavioral classification systems to generate key metrics, including time budgets, behavioral transitions, social interactions, habitat associations, and group composition dynamics. Compared to ground-based methods, drone-based observations significantly improved behavioral granularity, reducing visibility loss by 15% and capturing more transitions with higher accuracy and continuity. We validate kabr-tools through three case studies, analyzing 969 behavioral sequences, surpassing the capacity of traditional methods for data capture and annotation. We found that, like Plains zebras, vigilance in Grevy's zebras decreases with herd size, but, unlike Plains zebras, habitat has a negligible impact. Plains and Grevy's zebras exhibit strong behavioral inertia, with rare transitions to alert behaviors and observed spatial segregation between Grevy's zebras, Plains zebras, and giraffes in mixed-species herds. By enabling automated behavioral monitoring at scale, kabr-tools offers a powerful tool for ecosystem-wide studies, advancing conservation, biodiversity research, and ecological monitoring.

Species distributions encode valuable ecological and environmental information, yet their potential for guiding representation learning in remote sensing remains underexplored. We introduce WildSAT, which pairs satellite images with millions of geo-tagged wildlife observations readily-available on citizen science platforms. WildSAT employs a contrastive learning approach that jointly leverages satellite images, species occurrence maps, and textual habitat descriptions to train or fine-tune models. This approach significantly improves performance on diverse satellite image recognition tasks, outperforming both ImageNet-pretrained models and satellite-specific baselines. Additionally, by aligning visual and textual information, WildSAT enables zero-shot retrieval, allowing users to search geographic locations based on textual descriptions. WildSAT surpasses recent cross-modal learning methods, including approaches that align satellite images with ground imagery or wildlife photos, demonstrating the advantages of our approach. Finally, we analyze the impact of key design choices and highlight the broad applicability of WildSAT to remote sensing and biodiversity monitoring.

Animal ecology data collection using drones represents a substantial investment of time, expertise, and financial resources. Yet most existing datasets serve only a single research community, limiting interdisciplinary reuse. We propose a unified drone dataset standard, FAIR^2 Drones, that bridges ecology, robotics, and computer vision by building on existing FAIR and AI-ready data frameworks while adding essential platform metadata and annotation specifications. Our standard enables datasets to simultaneously support ecological analysis, robotics algorithm development, and computer vision benchmarking. We provide open-source validation tools, reference implementations, and multimodal extensions linking drone imagery with complementary sensors such as camera traps, GPS, and acoustics. By standardizing metadata across disciplines, this framework maximizes the scientific return on investment for costly field deployments and accelerates cross-domain collaboration in environmental monitoring.

Monitoring animal behavior can facilitate conservation efforts by providing key insights into wildlife health, population status, and ecosystem function. Automatic recognition of animals and their behaviors is critical for capitalizing on the large unlabeled datasets generated by modern video devices and for accelerating monitoring efforts at scale. However, the development of automated recognition systems is currently hindered by a lack of appropriately labeled datasets. Existing video datasets 1) do not classify animals according to established biological taxonomies; 2) are too small to facilitate large-scale behavioral studies and are often limited to a single species; and 3) do not feature temporally localized annotations and therefore do not facilitate localization of targeted behaviors within longer video sequences. Thus, we propose MammalNet, a new large-scale animal behavior dataset with taxonomy-guided annotations of mammals and their common behaviors. MammalNet contains over 18K videos totaling 539 hours, which is ~10 times larger than the largest existing animal behavior dataset. It covers 17 orders, 69 families, and 173 mammal categories for animal categorization and captures 12 high-level animal behaviors that received focus in previous animal behavior studies. We establish three benchmarks on MammalNet: standard animal and behavior recognition, compositional low-shot animal and behavior recognition, and behavior detection. Our dataset and code have been made available at: https://mammal-net.github.io.

Monitoring the population and movements of endangered species is an important task to wildlife conversation. Traditional tagging methods do not scale to large populations, while applying computer vision methods to camera sensor data requires re-identification (re-ID) algorithms to obtain accurate counts and moving trajectory of wildlife. However, existing re-ID methods are largely targeted at persons and cars, which have limited pose variations and constrained capture environments. This paper tries to fill the gap by introducing a novel large-scale dataset, the Amur Tiger Re-identification in the Wild (ATRW) dataset. ATRW contains over 8,000 video clips from 92 Amur tigers, with bounding box, pose keypoint, and tiger identity annotations. In contrast to typical re-ID datasets, the tigers are captured in a diverse set of unconstrained poses and lighting conditions. We demonstrate with a set of baseline algorithms that ATRW is a challenging dataset for re-ID. Lastly, we propose a novel method for tiger re-identification, which introduces precise pose parts modeling in deep neural networks to handle large pose variation of tigers, and reaches notable performance improvement over existing re-ID methods. The dataset is public available at https://cvwc2019.github.io/ .

Ecological imbalance owing to rapid urbanization and deforestation has adversely affected the population of several wild animals. This loss of habitat has skewed the population of several non-human primate species like chimpanzees and macaques and has constrained them to co-exist in close proximity of human settlements, often leading to human-wildlife conflicts while competing for resources. For effective wildlife conservation and conflict management, regular monitoring of population and of conflicted regions is necessary. However, existing approaches like field visits for data collection and manual analysis by experts is resource intensive, tedious and time consuming, thus necessitating an automated, non-invasive, more efficient alternative like image based facial recognition. The challenge in individual identification arises due to unrelated factors like pose, lighting variations and occlusions due to the uncontrolled environments, that is further exacerbated by limited training data. Inspired by human perception, we propose to learn representations that are robust to such nuisance factors and capture the notion of similarity over the individual identity sub-manifolds. The proposed approach, Primate Face Identification (PFID), achieves this by training the network to distinguish between positive and negative pairs of images. The PFID loss augments the standard cross entropy loss with a pairwise loss to learn more discriminative and generalizable features, thus making it appropriate for other related identification tasks like open-set, closed set and verification. We report state-of-the-art accuracy on facial recognition of two primate species, rhesus macaques and chimpanzees under the four protocols of classification, verification, closed-set identification and open-set recognition.

Animal vocalizations provide crucial insights for wildlife assessment, particularly in complex environments such as forests, aiding species identification and ecological monitoring. Recent advances in deep learning have enabled automatic species classification from their vocalizations. However, classifying species unseen during training remains challenging. To address this limitation, we introduce AnimalCLAP, a taxonomy-aware language-audio framework comprising a new dataset and model that incorporate hierarchical biological information. Specifically, our vocalization dataset consists of 4,225 hours of recordings covering 6,823 species, annotated with 22 ecological traits. The AnimalCLAP model is trained on this dataset to align audio and textual representations using taxonomic structures, improving the recognition of unseen species. We demonstrate that our proposed model effectively infers ecological and biological attributes of species directly from their vocalizations, achieving superior performance compared to CLAP. Our dataset, code, and models will be publicly available at https://dahlian00.github.io/AnimalCLAP_Page/.

Motivation The genotype assignment problem consists of predicting, from the genotype of an individual, which of a known set of populations it originated from. The problem arises in a variety of contexts, including wildlife forensics, invasive species detection and biodiversity monitoring. Existing approaches perform well under ideal conditions but are sensitive to a variety of common violations of the assumptions they rely on. Results In this article, we introduce Mycorrhiza, a machine learning approach for the genotype assignment problem. Our algorithm makes use of phylogenetic networks to engineer features that encode the evolutionary relationships among samples. Those features are then used as input to a Random Forests classifier. The classification accuracy was assessed on multiple published empirical SNP, microsatellite or consensus sequence datasets with wide ranges of size, geographical distribution and population structure and on simulated datasets. It compared favorably against widely used assessment tests or mixture analysis methods such as STRUCTURE and Admixture, and against another machine-learning based approach using principal component analysis for dimensionality reduction. Mycorrhiza yields particularly significant gains on datasets with a large average fixation index (FST) or deviation from the Hardy-Weinberg equilibrium. Moreover, the phylogenetic network approach estimates mixture proportions with good accuracy.

Although advances in deep learning and aerial surveillance technology are improving wildlife conservation efforts, complex and erratic environmental conditions still pose a problem, requiring innovative solutions for cost-effective small animal detection. This work introduces DEAL-YOLO, a novel approach that improves small object detection in Unmanned Aerial Vehicle (UAV) images by using multi-objective loss functions like Wise IoU (WIoU) and Normalized Wasserstein Distance (NWD), which prioritize pixels near the centre of the bounding box, ensuring smoother localization and reducing abrupt deviations. Additionally, the model is optimized through efficient feature extraction with Linear Deformable (LD) convolutions, enhancing accuracy while maintaining computational efficiency. The Scaled Sequence Feature Fusion (SSFF) module enhances object detection by effectively capturing inter-scale relationships, improving feature representation, and boosting metrics through optimized multiscale fusion. Comparison with baseline models reveals high efficacy with up to 69.5\% fewer parameters compared to vanilla Yolov8-N, highlighting the robustness of the proposed modifications. Through this approach, our paper aims to facilitate the detection of endangered species, animal population analysis, habitat monitoring, biodiversity research, and various other applications that enrich wildlife conservation efforts. DEAL-YOLO employs a two-stage inference paradigm for object detection, refining selected regions to improve localization and confidence. This approach enhances performance, especially for small instances with low objectness scores.

Video anomaly detection (VAD) is essential for enhancing safety and security by identifying unusual events across different environments. Existing VAD benchmarks, however, are primarily designed for general-purpose scenarios, neglecting the specific characteristics of smart home applications. To bridge this gap, we introduce SmartHome-Bench, the first comprehensive benchmark specially designed for evaluating VAD in smart home scenarios, focusing on the capabilities of multi-modal large language models (MLLMs). Our newly proposed benchmark consists of 1,203 videos recorded by smart home cameras, organized according to a novel anomaly taxonomy that includes seven categories, such as Wildlife, Senior Care, and Baby Monitoring. Each video is meticulously annotated with anomaly tags, detailed descriptions, and reasoning. We further investigate adaptation methods for MLLMs in VAD, assessing state-of-the-art closed-source and open-source models with various prompting techniques. Results reveal significant limitations in the current models' ability to detect video anomalies accurately. To address these limitations, we introduce the Taxonomy-Driven Reflective LLM Chain (TRLC), a new LLM chaining framework that achieves a notable 11.62% improvement in detection accuracy. The benchmark dataset and code are publicly available at https://github.com/Xinyi-0724/SmartHome-Bench-LLM.

Agentic UAVs represent a new frontier in autonomous aerial intelligence, integrating perception, decision-making, memory, and collaborative planning to operate adaptively in complex, real-world environments. Driven by recent advances in Agentic AI, these systems surpass traditional UAVs by exhibiting goal-driven behavior, contextual reasoning, and interactive autonomy. We provide a comprehensive foundation for understanding the architectural components and enabling technologies that distinguish Agentic UAVs from traditional autonomous UAVs. Furthermore, a detailed comparative analysis highlights advancements in autonomy with AI agents, learning, and mission flexibility. This study explores seven high-impact application domains precision agriculture, construction & mining, disaster response, environmental monitoring, infrastructure inspection, logistics, security, and wildlife conservation, illustrating the broad societal value of agentic aerial intelligence. Furthermore, we identify key challenges in technical constraints, regulatory limitations, and data-model reliability, and we present emerging solutions across hardware innovation, learning architectures, and human-AI interaction. Finally, a future roadmap is proposed, outlining pathways toward self-evolving aerial ecosystems, system-level collaboration, and sustainable, equitable deployments. This survey establishes a foundational framework for the future development, deployment, and governance of agentic aerial systems (Agentic UAVs) across diverse societal and industrial domains.

Birds are important indicators for monitoring both biodiversity and habitat health; they also play a crucial role in ecosystem management. Decline in bird populations can result in reduced eco-system services, including seed dispersal, pollination and pest control. Accurate and long-term monitoring of birds to identify species of concern while measuring the success of conservation interventions is essential for ecologists. However, monitoring is time consuming, costly and often difficult to manage over long durations and at meaningfully large spatial scales. Technology such as camera traps, acoustic monitors and drones provide methods for non-invasive monitoring. There are two main problems with using camera traps for monitoring: a) cameras generate many images, making it difficult to process and analyse the data in a timely manner; and b) the high proportion of false positives hinders the processing and analysis for reporting. In this paper, we outline an approach for overcoming these issues by utilising deep learning for real-time classi-fication of bird species and automated removal of false positives in camera trap data. Images are classified in real-time using a Faster-RCNN architecture. Images are transmitted over 3/4G cam-eras and processed using Graphical Processing Units (GPUs) to provide conservationists with key detection metrics therefore removing the requirement for manual observations. Our models achieved an average sensitivity of 88.79%, a specificity of 98.16% and accuracy of 96.71%. This demonstrates the effectiveness of using deep learning for automatic bird monitoring.

The current biodiversity loss crisis makes animal monitoring a relevant field of study. In light of this, data collected through monitoring can provide essential insights, and information for decision-making aimed at preserving global biodiversity. Despite the importance of such data, there is a notable scarcity of datasets featuring videos of birds, and none of the existing datasets offer detailed annotations of bird behaviors in video format. In response to this gap, our study introduces the first fine-grained video dataset specifically designed for bird behavior detection and species classification. This dataset addresses the need for comprehensive bird video datasets and provides detailed data on bird actions, facilitating the development of deep learning models to recognize these, similar to the advancements made in human action recognition. The proposed dataset comprises 178 videos recorded in Spanish wetlands, capturing 13 different bird species performing 7 distinct behavior classes. In addition, we also present baseline results using state of the art models on two tasks: bird behavior recognition and species classification.

Camera traps have transformed how ecologists study wildlife species distributions, activity patterns, and interspecific interactions. Although camera traps provide a cost-effective method for monitoring species, the time required for data processing can limit survey efficiency. Thus, the potential of Artificial Intelligence (AI), specifically Deep Learning (DL), to process camera-trap data has gained considerable attention. Using DL for these applications involves training algorithms, such as Convolutional Neural Networks (CNNs), to automatically detect objects and classify species. To overcome technical challenges associated with training CNNs, several research communities have recently developed platforms that incorporate DL in easy-to-use interfaces. We review key characteristics of four AI-powered platforms -- Wildlife Insights (WI), MegaDetector (MD), Machine Learning for Wildlife Image Classification (MLWIC2), and Conservation AI -- including data management tools and AI features. We also provide R code in an open-source GitBook, to demonstrate how users can evaluate model performance, and incorporate AI output in semi-automated workflows. We found that species classifications from WI and MLWIC2 generally had low recall values (animals that were present in the images often were not classified to the correct species). Yet, the precision of WI and MLWIC2 classifications for some species was high (i.e., when classifications were made, they were generally accurate). MD, which classifies images using broader categories (e.g., "blank" or "animal"), also performed well. Thus, we conclude that, although species classifiers were not accurate enough to automate image processing, DL could be used to improve efficiencies by accepting classifications with high confidence values for certain species or by filtering images containing blanks.

The persisting threats on migratory bird populations highlight the urgent need for effective monitoring techniques that could assist in their conservation. Among these, passive acoustic monitoring is an essential tool, particularly for nocturnal migratory species that are difficult to track otherwise. This work presents the Nocturnal Bird Migration (NBM) dataset, a collection of 13,359 annotated vocalizations from 117 species of the Western Palearctic. The dataset includes precise time and frequency annotations, gathered by dozens of bird enthusiasts across France, enabling novel downstream acoustic analysis. In particular, we prove the utility of this database by training an original two-stage deep object detection model tailored for the processing of audio data. While allowing the precise localization of bird calls in spectrograms, this model shows competitive accuracy on the 45 main species of the dataset with state-of-the-art systems trained on much larger audio collections. These results highlight the interest of fostering similar open-science initiatives to acquire costly but valuable fine-grained annotations of audio files. All data and code are made openly available.

Long-term behavioral monitoring of individual animals is crucial for studying behavioral changes that occur over different time scales, especially for conservation and evolutionary biology. Computer vision methods have proven to benefit biodiversity monitoring, but automated behavior monitoring in wild populations remains challenging. This stems from the lack of datasets that cover a range of computer vision tasks necessary to extract biologically meaningful measurements of individual animals. Here, we introduce such a dataset (CHIRP) with a new method (CORVID) for individual re-identification of wild birds. The CHIRP (Combining beHaviour, Individual Re-identification and Postures) dataset is curated from a long-term population of wild Siberian jays studied in Swedish Lapland, supporting re-identification (re-id), action recognition, 2D keypoint estimation, object detection, and instance segmentation. In addition to traditional task-specific benchmarking, we introduce application-specific benchmarking with biologically relevant metrics (feeding rates, co-occurrence rates) to evaluate the performance of models in real-world use cases. Finally, we present CORVID (COlouR-based Video re-ID), a novel pipeline for individual identification of birds based on the segmentation and classification of colored leg rings, a widespread approach for visual identification of individual birds. CORVID offers a probability-based id tracking method by matching the detected combination of color rings with a database. We use application-specific benchmarking to show that CORVID outperforms state-of-the-art re-id methods. We hope this work offers the community a blueprint for curating real-world datasets from ethically approved biological studies to bridge the gap between computer vision research and biological applications.

Animal habitat surveys play a critical role in preserving the biodiversity of the land. One of the effective ways to gain insights into animal habitats involves identifying animal footprints, which offers valuable information about species distribution, abundance, and behavior. However, due to the scarcity of animal footprint images, there are no well-maintained public datasets, preventing recent advanced techniques in computer vision from being applied to animal tracking. In this paper, we introduce OpenAnimalTracks dataset, the first publicly available labeled dataset designed to facilitate the automated classification and detection of animal footprints. It contains various footprints from 18 wild animal species. Moreover, we build benchmarks for species classification and detection and show the potential of automated footprint identification with representative classifiers and detection models. We find SwinTransformer achieves a promising classification result, reaching 69.41% in terms of the averaged accuracy. Faster-RCNN achieves mAP of 0.295. We hope our dataset paves the way for automated animal tracking techniques, enhancing our ability to protect and manage biodiversity. Our dataset and code are available at https://github.com/dahlian00/OpenAnimalTracks.

Automated video analysis is critical for wildlife conservation. A foundational task in this domain is multi-animal tracking (MAT), which underpins applications such as individual re-identification and behavior recognition. However, existing datasets are limited in scale, constrained to a few species, or lack sufficient temporal and geographical diversity - leaving no suitable benchmark for training general-purpose MAT models applicable across wild animal populations. To address this, we introduce SA-FARI, the largest open-source MAT dataset for wild animals. It comprises 11,609 camera trap videos collected over approximately 10 years (2014-2024) from 741 locations across 4 continents, spanning 99 species categories. Each video is exhaustively annotated culminating in ~46 hours of densely annotated footage containing 16,224 masklet identities and 942,702 individual bounding boxes, segmentation masks, and species labels. Alongside the task-specific annotations, we publish anonymized camera trap locations for each video. Finally, we present comprehensive benchmarks on SA-FARI using state-of-the-art vision-language models for detection and tracking, including SAM 3, evaluated with both species-specific and generic animal prompts. We also compare against vision-only methods developed specifically for wildlife analysis. SA-FARI is the first large-scale dataset to combine high species diversity, multi-region coverage, and high-quality spatio-temporal annotations, offering a new foundation for advancing generalizable multianimal tracking in the wild. The dataset is available at https://www.conservationxlabs.com/sa-fari{conservationxlabs.com/SA-FARI}.

In situ imageomics leverages machine learning techniques to infer biological traits from images collected in the field, or in situ, to study individuals organisms, groups of wildlife, and whole ecosystems. Such datasets provide real-time social and environmental context to inferred biological traits, which can enable new, data-driven conservation and ecosystem management. The development of machine learning techniques to extract biological traits from images are impeded by the volume and quality data required to train these models. Autonomous, unmanned aerial vehicles (UAVs), are well suited to collect in situ imageomics data as they can traverse remote terrain quickly to collect large volumes of data with greater consistency and reliability compared to manually piloted UAV missions. However, little guidance exists on optimizing autonomous UAV missions for the purposes of remote sensing for conservation and biodiversity monitoring. The UAV video dataset curated by KABR: In-Situ Dataset for Kenyan Animal Behavior Recognition from Drone Videos required three weeks to collect, a time-consuming and expensive endeavor. Our analysis of KABR revealed that a third of the videos gathered were unusable for the purposes of inferring wildlife behavior. We analyzed the flight telemetry data from portions of UAV videos that were usable for inferring wildlife behavior, and demonstrate how these insights can be integrated into an autonomous remote sensing system to track wildlife in real time. Our autonomous remote sensing system optimizes the UAV's actions to increase the yield of usable data, and matches the flight path of an expert pilot with an 87% accuracy rate, representing an 18.2% improvement in accuracy over previously proposed methods.

Biologists all over the world use camera traps to monitor biodiversity and wildlife population density. The computer vision community has been making strides towards automating the species classification challenge in camera traps, but it has proven difficult to to apply models trained in one region to images collected in different geographic areas. In some cases, accuracy falls off catastrophically in new region, due to both changes in background and the presence of previously-unseen species. We propose a pipeline that takes advantage of a pre-trained general animal detector and a smaller set of labeled images to train a classification model that can efficiently achieve accurate results in a new region.

Bats are key indicators of ecosystem health and are protected throughout Europe, making reliable population monitoring a conservation priority. Their cryptic nocturnal lifestyle makes passive acoustic monitoring essential, yet automated identification remains difficult as echolocation calls vary with behaviour and environment and overlap among species. We present a deep learning framework that jointly predicts species and genus and combines genus predictions with geographic species distributions at inference. When only one species of a predicted genus occurs in a region, the framework can resolve species absent from the learned taxonomy. This reframes geographic information as a means of extending, rather than constraining, a classifier's effective taxonomy. Using recordings spanning 35 European bat species, we evaluate closed-set classification, examine the instability of performance estimates for sparsely represented species, and conduct a controlled held-out proof-of-principle experiment. The rare-species analysis shows how limited evaluation data can obscure species-level performance, while the held-out experiment shows that genus predictions and location can recover labels unavailable to the species head. Geographic resolution extends operational coverage from 35 to 41 of the 48 native European bat species, increasing coverage from 73% to 85%. To our knowledge, this is the broadest operational coverage reported for automated European bat classification. More broadly, the bat framework provides proof of principle for resolving unseen fine-grained classes by combining coarse predictions with transparent external constraints.

Aerial drone surveys increasingly support wildlife population estimation, yet a useful census is more than a count: population dynamics are defined by species composition, sex ratios and age structure, that is, by which species are present and how a herd splits into adult males, adult females and juveniles. We use red deer (Cervus elaphus) as a test case, because managers act on these dynamics and because the visible cue defining adult males, the antlers, is seasonally variable. Surveys are flown nadir, high enough not to disturb the animals, so each deer occupies only a small, low-resolution patch. The two recording modalities fail in opposite conditions: in color a deer under canopy blends into the ground, while in thermal it becomes a bright blob that loses fine detail. Rather than trust either modality alone, we fuse them at every stage using self-supervised DINOv3 features. Our pipeline tracks animals in both modalities, treats an animal as confirmed only when the two cameras agree, keeps only the clear, non-occluded frames, and assigns species and sex by a vote across them; life stage is read separately from geo-referenced body size, since at survey resolution a juvenile often only differs from an adult female in size. Across four flights spanning the antler season the fused pipeline correctly classifies 25 of the 26 detected individuals (7 of 8 adult males, all 16 adult females and 2 juveniles), against 20 of 26 for either sensor alone. Multimodal species classification reaches 96.0%, while for sex classification fusing the two sensors matters most: the combined RGB+thermal model is the most robust across environments and seasons. Automating the demographic classification turns a drone flight from a count into a repeatable reading of herd structure, so the sex ratios and age structure that managers already act on can be gathered as often as a survey can be flown.

Biodiversity is declining at an unprecedented rate, impacting ecosystem services necessary to ensure food, water, and human health and well-being. Understanding the distribution of species and their habitats is crucial for conservation policy planning. However, traditional methods in ecology for species distribution models (SDMs) generally focus either on narrow sets of species or narrow geographical areas and there remain significant knowledge gaps about the distribution of species. A major reason for this is the limited availability of data traditionally used, due to the prohibitive amount of effort and expertise required for traditional field monitoring. The wide availability of remote sensing data and the growing adoption of citizen science tools to collect species observations data at low cost offer an opportunity for improving biodiversity monitoring and enabling the modelling of complex ecosystems. We introduce a novel task for mapping bird species to their habitats by predicting species encounter rates from satellite images, and present SatBird, a satellite dataset of locations in the USA with labels derived from presence-absence observation data from the citizen science database eBird, considering summer (breeding) and winter seasons. We also provide a dataset in Kenya representing low-data regimes. We additionally provide environmental data and species range maps for each location. We benchmark a set of baselines on our dataset, including SOTA models for remote sensing tasks. SatBird opens up possibilities for scalably modelling properties of ecosystems worldwide.

Wildlife trafficking remains a critical global issue, significantly impacting biodiversity, ecological stability, and public health. Despite efforts to combat this illicit trade, the rise of e-commerce platforms has made it easier to sell wildlife products, putting new pressure on wild populations of endangered and threatened species. The use of these platforms also opens a new opportunity: as criminals sell wildlife products online, they leave digital traces of their activity that can provide insights into trafficking activities as well as how they can be disrupted. The challenge lies in finding these traces. Online marketplaces publish ads for a plethora of products, and identifying ads for wildlife-related products is like finding a needle in a haystack. Learning classifiers can automate ad identification, but creating them requires costly, time-consuming data labeling that hinders support for diverse ads and research questions. This paper addresses a critical challenge in the data science pipeline for wildlife trafficking analytics: generating quality labeled data for classifiers that select relevant data. While large language models (LLMs) can directly label advertisements, doing so at scale is prohibitively expensive. We propose a cost-effective strategy that leverages LLMs to generate pseudo labels for a small sample of the data and uses these labels to create specialized classification models. Our novel method automatically gathers diverse and representative samples to be labeled while minimizing the labeling costs. Our experimental evaluation shows that our classifiers achieve up to 95% F1 score, outperforming LLMs at a lower cost. We present real use cases that demonstrate the effectiveness of our approach in enabling analyses of different aspects of wildlife trafficking.

Very high-resolution (VHR) satellite imagery has emerged as a powerful tool for monitoring marine animals on a large scale. However, existing deep learning-based whale detection methods usually require manually created, high-quality bounding box annotations, which are labor-intensive to produce. Moreover, existing studies often exclude ``uncertain whales'', individuals that have ambiguous appearances in satellite imagery, limiting the applicability of these models in real-world scenarios. To address these limitations, this study introduces an automated pipeline for detecting beluga whales and harp seals in VHR satellite imagery. The pipeline leverages point annotations and the Segment Anything Model (SAM) to generate precise bounding box annotations, which are used to train YOLOv8 for multiclass detection of certain whales, uncertain whales, and harp seals. Experimental results demonstrated that SAM-generated annotations significantly improved detection performance, achieving higher F_1-scores compared to traditional buffer-based annotations. YOLOv8 trained on SAM-labeled boxes achieved an overall F_1-score of 72.2% for whales overall and 70.3% for harp seals, with superior performance in dense scenes. The proposed approach not only reduces the manual effort required for annotation but also enhances the detection of uncertain whales, offering a more comprehensive solution for marine animal monitoring. This method holds great potential for extending to other species, habitats, and remote sensing platforms, as well as for estimating whale biometrics, thereby advancing ecological monitoring and conservation efforts. The codes for our label and detection pipeline are publicly available at http://github.com/voyagerxvoyagerx/beluga-seeker .

Camera-based electronic monitoring (EM) systems are increasingly being deployed onboard commercial fishing vessels to collect essential data for fisheries management and regulation. These systems generate large quantities of video data which must be reviewed on land by human experts. Computer vision can assist this process by automatically detecting and classifying fish species, however the lack of existing public data in this domain has hindered progress. To address this, we present the Fishnet Open Images Database, a large dataset of EM imagery for fish detection and fine-grained categorization onboard commercial fishing vessels. The dataset consists of 86,029 images containing 34 object classes, making it the largest and most diverse public dataset of fisheries EM imagery to-date. It includes many of the characteristic challenges of EM data: visual similarity between species, skewed class distributions, harsh weather conditions, and chaotic crew activity. We evaluate the performance of existing detection and classification algorithms and demonstrate that the dataset can serve as a challenging benchmark for development of computer vision algorithms in fisheries. The dataset is available at https://www.fishnet.ai/.

Computer vision analysis of camera trap video footage is essential for wildlife conservation, as captured behaviours offer some of the earliest indicators of changes in population health. Recently, several high-impact animal behaviour datasets and methods have been introduced to encourage their use; however, the role of behaviour-correlated background information and its significant effect on out-of-distribution generalisation remain unexplored. In response, we present the PanAf-FGBG dataset, featuring 20 hours of wild chimpanzee behaviours, recorded at over 350 individual camera locations. Uniquely, it pairs every video with a chimpanzee (referred to as a foreground video) with a corresponding background video (with no chimpanzee) from the same camera location. We present two views of the dataset: one with overlapping camera locations and one with disjoint locations. This setup enables, for the first time, direct evaluation of in-distribution and out-of-distribution conditions, and for the impact of backgrounds on behaviour recognition models to be quantified. All clips come with rich behavioural annotations and metadata including unique camera IDs and detailed textual scene descriptions. Additionally, we establish several baselines and present a highly effective latent-space normalisation technique that boosts out-of-distribution performance by +5.42% mAP for convolutional and +3.75% mAP for transformer-based models. Finally, we provide an in-depth analysis on the role of backgrounds in out-of-distribution behaviour recognition, including the so far unexplored impact of background durations (i.e., the count of background frames within foreground videos).

We consider the problem of detecting, isolating and classifying elephant calls in continuously recorded audio. Such automatic call characterisation can assist conservation efforts and inform environmental management strategies. In contrast to previous work in which call detection was performed at a segment level, we perform call detection at a frame level which implicitly also allows call endpointing, the isolation of a call in a longer recording. For experimentation, we employ two annotated datasets, one containing Asian and the other African elephant vocalisations. We evaluate several shallow and deep classifier models, and show that the current best performance can be improved by using an audio spectrogram transformer (AST), a neural architecture which has not been used for this purpose before, and which we have configured in a novel sequence-to-sequence manner. We also show that using transfer learning by pre-training leads to further improvements both in terms of computational complexity and performance. Finally, we consider sub-call classification using an accepted taxonomy of call types, a task which has not previously been considered. We show that also in this case the transformer architectures provide the best performance. Our best classifiers achieve an average precision (AP) of 0.962 for framewise binary call classification, and an area under the receiver operating characteristic (AUC) of 0.957 and 0.979 for call classification with 5 classes and sub-call classification with 7 classes respectively. All of these represent either new benchmarks (sub-call classifications) or improvements on previously best systems. We conclude that a fully-automated elephant call detection and subcall classification system is within reach. Such a system would provide valuable information on the behaviour and state of elephant herds for the purposes of conservation and management.

Having accurate, detailed, and up-to-date information about the location and behavior of animals in the wild would revolutionize our ability to study and conserve ecosystems. We investigate the ability to automatically, accurately, and inexpensively collect such data, which could transform many fields of biology, ecology, and zoology into "big data" sciences. Motion sensor "camera traps" enable collecting wildlife pictures inexpensively, unobtrusively, and frequently. However, extracting information from these pictures remains an expensive, time-consuming, manual task. We demonstrate that such information can be automatically extracted by deep learning, a cutting-edge type of artificial intelligence. We train deep convolutional neural networks to identify, count, and describe the behaviors of 48 species in the 3.2-million-image Snapshot Serengeti dataset. Our deep neural networks automatically identify animals with over 93.8% accuracy, and we expect that number to improve rapidly in years to come. More importantly, if our system classifies only images it is confident about, our system can automate animal identification for 99.3% of the data while still performing at the same 96.6% accuracy as that of crowdsourced teams of human volunteers, saving more than 8.4 years (at 40 hours per week) of human labeling effort (i.e. over 17,000 hours) on this 3.2-million-image dataset. Those efficiency gains immediately highlight the importance of using deep neural networks to automate data extraction from camera-trap images. Our results suggest that this technology could enable the inexpensive, unobtrusive, high-volume, and even real-time collection of a wealth of information about vast numbers of animals in the wild.

Accurate monitoring of forest disturbances is essential for understanding carbon dynamics and land management, yet traditional approaches typically rely on pixel-wise analysis of satellite time-series, ignoring spatial context. We present a deep learning framework that maps 38 years (1984-2022) of forest disturbance across the contiguous United States by modeling temporal trajectories and spatial neighborhoods simultaneously. By leveraging a vision transformer architecture, our approach effectively filters noise from weak supervision signals to produce spatially coherent disturbance maps. We perform exhaustive evaluations across multiple satellites (Landsat, Sentinel-1, Sentinel-2) and temporal windows (38 years and the more recent 6 years), validating performance against a novel, manually annotated validation dataset (n=300) and independent fire perimeter dataset (n=706). The results highlight the complexity of the task: while our spatio-temporal model demonstrates high precision (up to 98.2% for +-1 year detection on MTBS and up to 71.3% on the CONUS validation datasets, with F1-scores up to 75.8% and 47.3%, respectively) and effectively reduces spatial artifacts, it exhibits performance trade-offs across different disturbance regimes compared to pixel-wise baselines. Our method offers a promising foundation for consistent forest monitoring.

Accurate individual identification is essential for monitoring rare amphibians, yet invasive marking is often unsuitable for critically endangered species. We evaluate state-of-the-art computer-vision methods for photographic re-identification of the Hula painted frog (Latonia nigriventer) using 1,233 ventral images from 191 individuals collected during 2013-2020 capture-recapture surveys. We compare deep local-feature matching in a zero-shot setting with deep global-feature embedding models. The local-feature pipeline achieves 98% top-1 closed-set identification accuracy, outperforming all global-feature models; fine-tuning improves the best global-feature model to 60% top-1 (91% top-10) but remains below local matching. To combine scalability with accuracy, we implement a two-stage workflow in which a fine-tuned global-feature model retrieves a short candidate list that is re-ranked by local-feature matching, reducing end-to-end runtime from 6.5-7.8 hours to ~38 minutes while maintaining ~96% top-1 closed-set accuracy on the labeled dataset. Separation of match scores between same- and different-individual pairs supports thresholding for open-set identification, enabling practical handling of novel individuals. We deploy this pipeline as a web application for routine field use, providing rapid, standardized, non-invasive identification to support conservation monitoring and capture-recapture analyses. Overall, in this species, zero-shot deep local-feature matching outperformed global-feature embedding and provides a strong default for photo-identification.

This study presents a comprehensive analysis of bird diversity across Sri Lanka by integrating spatial, temporal, and environmental data. Bird observation records were combined with environmental variables, including weather conditions, air pollution, the Normalized Difference Vegetation Index (NDVI), land cover, elevation, and Artificial Light At Night (ALAN), and rigorously preprocessed to ensure data quality. Spatial analyses were conducted on multiple grid scales (2 km, 5 km, 10 km) to evaluate patterns in species richness while minimizing sampling bias through spatial thinning. Temporal trends were assessed using effort-corrected metrics including rarefied richness and occupancy rates to account for variations in observation effort over time. Environmental drivers of bird diversity were examined using multivariate statistical models, including Poisson Generalized Linear Models (GLMs) and correlation analyses, to identify key associations between ecological factors and species richness. Additionally, community structure, dominance patterns, and beta diversity were analyzed to understand variations in species composition across regions and time. The study found that land-cover type is a stronger predictor of bird diversity than individual continuous variables such as NDVI or temperature alone. Urbanization, measured by ALAN, exhibits nuanced scale-dependent effects, supporting high abundances of a few generalist species while reducing overall richness. The findings provide actionable insights into the patterns and drivers of avian diversity in Sri Lanka, offering a scalable and reproducible framework for biodiversity research and conservation planning.

The accelerating loss of biodiversity presents critical challenges for ecological research and conservation strategies. The preservation of biodiversity is paramount for maintaining ecological balance and ensuring the sustainability of ecosystems. However, biodiversity faces numerous threats, including habitat loss, climate change, and the proliferation of invasive species. Addressing these and other ecology-related challenges, both at local and global scales, requires comprehensive monitoring, predictive and conservation planning capabilities. Artificial Intelligence (AI) Foundation Models (FMs) have gained significant momentum in numerous scientific domains by leveraging vast datasets to learn general-purpose representations adaptable to various downstream tasks. This paradigm holds immense promise for biodiversity conservation. In response, we introduce BioAnalyst, the first Foundation Model tailored for biodiversity analysis and conservation planning. BioAnalyst employs a transformer-based architecture, pre-trained on extensive multi-modal datasets encompassing species occurrence records, remote sensing indicators, climate and environmental variables. BioAnalyst is designed for adaptability, allowing for fine-tuning of a range of downstream tasks, such as species distribution modelling, habitat suitability assessments, invasive species detection, and population trend forecasting. We evaluate the model's performance on two downstream use cases, demonstrating its generalisability compared to existing methods, particularly in data-scarce scenarios for two distinct use-cases, establishing a new accuracy baseline for ecological forecasting. By openly releasing BioAnalyst and its fine-tuning workflows to the scientific community, we aim to foster collaborative efforts in biodiversity modelling and advance AI-driven solutions to pressing ecological challenges.

Monitoring critically endangered western lowland gorillas is currently hampered by the immense manual effort required to re-identify individuals from vast archives of camera trap footage. The primary obstacle to automating this process has been the lack of large-scale, "in-the-wild" video datasets suitable for training robust deep learning models. To address this gap, we introduce a comprehensive benchmark with three novel datasets: Gorilla-SPAC-Wild, the largest video dataset for wild primate re-identification to date; Gorilla-Berlin-Zoo, for assessing cross-domain re-identification generalization; and Gorilla-SPAC-MoT, for evaluating multi-object tracking in camera trap footage. Building on these datasets, we present GorillaWatch, an end-to-end pipeline integrating detection, tracking, and re-identification. To exploit temporal information, we introduce a multi-frame self-supervised pretraining strategy that leverages consistency in tracklets to learn domain-specific features without manual labels. To ensure scientific validity, a differentiable adaptation of AttnLRP verifies that our model relies on discriminative biometric traits rather than background correlations. Extensive benchmarking subsequently demonstrates that aggregating features from large-scale image backbones outperforms specialized video architectures. Finally, we address unsupervised population counting by integrating spatiotemporal constraints into standard clustering to mitigate over-segmentation. We publicly release all code and datasets to facilitate scalable, non-invasive monitoring of endangered species

Passive acoustic monitoring (PAM) is crucial for bioacoustic research, enabling non-invasive species tracking and biodiversity monitoring. Citizen science platforms like Xeno-Canto provide large annotated datasets from focal recordings, where the target species is intentionally recorded. However, PAM requires monitoring in passive soundscapes, creating a domain shift between focal and passive recordings, which challenges deep learning models trained on focal recordings. To address this, we leverage supervised contrastive learning to improve domain generalization in bird sound classification, enforcing domain invariance across same-class examples from different domains. We also propose ProtoCLR (Prototypical Contrastive Learning of Representations), which reduces the computational complexity of the SupCon loss by comparing examples to class prototypes instead of pairwise comparisons. Additionally, we present a new few-shot classification evaluation based on BIRB, a large-scale bird sound benchmark to evaluate bioacoustic pre-trained models.

Accurate counts of fish populations are essential for monitoring ecosystems and making decisions for conservation, harvest limits, and river management. In many field deployments, these counts are obtained from sonar videos that experts must inspect manually, making large-scale monitoring slow, expensive, and difficult. Automated counting systems have been proposed as a scalable alternative, but so far this promise has been difficult to realize in deployment. Developing evaluations that better reflect real-world deployment conditions will help close this gap and drive improvements in counting performance in practice. To achieve this, we propose Caltech Fish Counting 2026 (CFC26), a new dataset with improved evaluation protocols that simulate deployment to seen and novel rivers, testing in-distribution and out-of-distribution performance. We expand the CFC22 dataset to eleven deployment locations across nine Pacific salmon river systems from Alaska to Northern California, capturing a broader geographical and ecological range of data. We additionally introduce two new evaluation metrics for counting, nMNE and nMANE, that mirror the operational workflow that experts use and help surface errors that frame-level detection metrics do not capture. Using these metrics, we reveal previously-concealed directional bias in upstream vs downstream counts, which would have direct and significant ecological implications if undetected. The dataset and code are publicly available on CaltechDATA and GitHub.

This paper introduces WildlifeReID-10k, a new large-scale re-identification benchmark with more than 10k animal identities of around 33 species across more than 140k images, re-sampled from 37 existing datasets. WildlifeReID-10k covers diverse animal species and poses significant challenges for SoTA methods, ensuring fair and robust evaluation through its time-aware and similarity-aware split protocol. The latter is designed to address the common issue of training-to-test data leakage caused by visually similar images appearing in both training and test sets. The WildlifeReID-10k dataset and benchmark are publicly available on Kaggle, along with strong baselines for both closed-set and open-set evaluation, enabling fair, transparent, and standardized evaluation of not just multi-species animal re-identification models.

Elasmobranchs (shark sand rays) represent a critical component of marine ecosystems. Yet, they are experiencing global population declines and effective monitoring of populations is essential to their protection. Underwater stationary videos, such as those from Baited Remote Underwater Video Stations (BRUVS), are critical for understanding elasmobranch spatial ecology and abundance. However, processing these videos requires time-consuming manual analysis that can delay conservation. To address this challenge, we developed SharkTrack, a semi-automatic underwater video analysis software. SharkTrack uses Convolutional Neural Networks (CNN) and Multi-Object Tracking to automatically detect and track elasmobranchs and provides an annotation pipeline to manually classify elasmobranch species and compute species-specific MaxN (ssMaxN), the standard metric of relative abundance. When tested on BRUVS footage from locations unseen by the CNN model during training, SharkTrack computed ssMaxN with 89% accuracy over 207 hours of footage. The semi-automatic SharkTrack pipeline required two minutes of manual classification per hour of video, an estimated 95% reduction of manual analysis time compared to traditional methods. Furthermore, we demonstrate SharkTrack accuracy across diverse marine ecosystems and elasmobranch species, an advancement compared to previous models, which were limited to specific species or locations. SharkTrack applications extend beyond BRUVS, facilitating the analysis of any underwater stationary video. By making video analysis faster and more accessible, SharkTrack enables research and conservation organisations to monitor elasmobranch populations more efficiently, thereby improving conservation efforts. To further support these goals, we provide public access to the SharkTrack software.

Automated individual animal re-identification is essential for large-scale biodiversity monitoring; however, field imagery complicates separating identity cues from nuisance variation in pose, illumination, background, resolution, and species-specific morphology. The DS@GT ARC submission to AnimalCLEF 2026 introduces a multi-species image-clustering system for re-identifying Eurasian lynx, fire salamanders, loggerhead sea turtles, and Texas horned lizards. Instead of relying on a single descriptor or nearest-neighbor retrieval, this approach formulates re-identification as species-aware graph construction over candidate image pairs. The pipeline integrates tailored preprocessing, global candidate retrieval, LightGlue-based local verification with multiple keypoint families, LightGBM pair scoring, conservative edge admission, and Leiden community detection. This design directly addresses a primary failure mode of clustering-based re-identification: high-scoring false pairs that act as bridge edges and merge distinct individuals through transitive closure. Across species, ablation studies demonstrate that local feature support, foreground-aware preprocessing, and species-specific backbone selection enhance pair evidence, while graph operating points determine the trade-off between fragmentation and over-merging. The selected submission achieved a public ARI of 0.733 and a private ARI of 0.674, ranking fifth among 230 teams. These results indicate that robust wildlife re-identification requires not only strong visual representations but also calibrated integration of global similarity, local identity markings, neighborhood context, and graph-level constraints. The code can be found at https://github.com/dsgt-arc/animalclef-2026.

Passive acoustic monitoring has become a key strategy in biodiversity assessment, conservation, and behavioral ecology, especially as Internet-of-Things (IoT) devices enable continuous in situ audio collection at scale. While recent self-supervised learning (SSL)-based audio encoders, such as BEATs and AVES, have shown strong performance in bioacoustic tasks, their computational cost and limited robustness to unseen environments hinder deployment on resource-constrained platforms. In this work, we introduce BioME, a resource-efficient audio encoder designed for bioacoustic applications. BioME is trained via layer-to-layer distillation from a high-capacity teacher model, enabling strong representational transfer while reducing the parameter count by 75%. To further improve ecological generalization, the model is pretrained on multi-domain data spanning speech, environmental sounds, and animal vocalizations. A key contribution is the integration of modulation-aware acoustic features via FiLM conditioning, injecting a DSP-inspired inductive bias that enhances feature disentanglement in low-capacity regimes. Across multiple bioacoustic tasks, BioME matches or surpasses the performance of larger models, including its teacher, while being suitable for resource-constrained IoT deployments. For reproducibility, code and pretrained checkpoints are publicly available.

The difficulty of monitoring biodiversity at fine scales and over large areas limits ecological knowledge and conservation efforts. To fill this gap, Species Distribution Models (SDMs) predict species across space from spatially explicit features. Yet, they face the challenge of integrating the rich but heterogeneous data made available over the past decade, notably millions of opportunistic species observations and standardized surveys, as well as multi-modal remote sensing data. In light of that, we have designed and developed a new European-scale dataset for SDMs at high spatial resolution (10-50 m), including more than 10k species (i.e., most of the European flora). The dataset comprises 5M heterogeneous Presence-Only records and 90k exhaustive Presence-Absence survey records, all accompanied by diverse environmental rasters (e.g., elevation, human footprint, and soil) that are traditionally used in SDMs. In addition, it provides Sentinel-2 RGB and NIR satellite images with 10 m resolution, a 20-year time-series of climatic variables, and satellite time-series from the Landsat program. In addition to the data, we provide an openly accessible SDM benchmark (hosted on Kaggle), which has already attracted an active community and a set of strong baselines for single predictor/modality and multimodal approaches. All resources, e.g., the dataset, pre-trained models, and baseline methods (in the form of notebooks), are available on Kaggle, allowing one to start with our dataset literally with two mouse clicks.

Habitat assessment at local scales -- critical for enhancing biodiversity and guiding conservation priorities -- often relies on expert field survey that can be costly, motivating the exploration of AI-driven tools to automate and refine this process. While most AI-driven habitat mapping depends on remote sensing, it is often constrained by sensor availability, weather, and coarse resolution. In contrast, ground-level imagery captures essential structural and compositional cues invisible from above and remains underexplored for robust, fine-grained habitat classification. This study addresses this gap by applying state-of-the-art deep neural network architectures to ground-level habitat imagery. Leveraging data from the UK Countryside Survey covering 18 broad habitat types, we evaluate two families of models -- convolutional neural networks (CNNs) and vision transformers (ViTs) -- under both supervised and supervised contrastive learning paradigms. Our results demonstrate that ViTs consistently outperform state-of-the-art CNN baselines on key classification metrics (Top-3 accuracy = 91\%, MCC = 0.66) and offer more interpretable scene understanding tailored to ground-level images. Moreover, supervised contrastive learning significantly reduces misclassification rates among visually similar habitats (e.g., Improved vs. Neutral Grassland), driven by a more discriminative embedding space. Finally, our best model performs on par with experienced ecological experts in habitat classification from images, underscoring the promise of expert-level automated assessment. By integrating advanced AI with ecological expertise, this research establishes a scalable, cost-effective framework for ground-level habitat monitoring to accelerate biodiversity conservation and inform land-use decisions at the national scale.

Monitoring of land cover and land use is crucial in natural resources management. Automatic visual mapping can carry enormous economic value for agriculture, forestry, or public administration. Satellite or aerial images combined with computer vision and deep learning enable precise assessment and can significantly speed up change detection. Aerial imagery usually provides images with much higher pixel resolution than satellite data allowing more detailed mapping. However, there is still a lack of aerial datasets made for the segmentation, covering rural areas with a resolution of tens centimeters per pixel, manual fine labels, and highly publicly important environmental instances like buildings, woods, water, or roads. Here we introduce LandCover.ai (Land Cover from Aerial Imagery) dataset for semantic segmentation. We collected images of 216.27 sq. km rural areas across Poland, a country in Central Europe, 39.51 sq. km with resolution 50 cm per pixel and 176.76 sq. km with resolution 25 cm per pixel and manually fine annotated four following classes of objects: buildings, woodlands, water, and roads. Additionally, we report simple benchmark results, achieving 85.56% of mean intersection over union on the test set. It proves that the automatic mapping of land cover is possible with a relatively small, cost-efficient, RGB-only dataset. The dataset is publicly available at https://landcover.ai.linuxpolska.com/

Insects represent half of all global biodiversity, yet many of the world's insects are disappearing, with severe implications for ecosystems and agriculture. Despite this crisis, data on insect diversity and abundance remain woefully inadequate, due to the scarcity of human experts and the lack of scalable tools for monitoring. Ecologists have started to adopt camera traps to record and study insects, and have proposed computer vision algorithms as an answer for scalable data processing. However, insect monitoring in the wild poses unique challenges that have not yet been addressed within computer vision, including the combination of long-tailed data, extremely similar classes, and significant distribution shifts. We provide the first large-scale machine learning benchmarks for fine-grained insect recognition, designed to match real-world tasks faced by ecologists. Our contributions include a curated dataset of images from citizen science platforms and museums, and an expert-annotated dataset drawn from automated camera traps across multiple continents, designed to test out-of-distribution generalization under field conditions. We train and evaluate a variety of baseline algorithms and introduce a combination of data augmentation techniques that enhance generalization across geographies and hardware setups. Code and datasets are made publicly available.

Camera traps, unmanned observation devices, and deep learning-based image recognition systems have greatly reduced human effort in collecting and analyzing wildlife images. However, data collected via above apparatus exhibits 1) long-tailed and 2) open-ended distribution problems. To tackle the open-set long-tailed recognition problem, we propose the Temporal Flow Mask Attention Network that comprises three key building blocks: 1) an optical flow module, 2) an attention residual module, and 3) a meta-embedding classifier. We extract temporal features of sequential frames using the optical flow module and learn informative representation using attention residual blocks. Moreover, we show that applying the meta-embedding technique boosts the performance of the method in open-set long-tailed recognition. We apply this method on a Korean Demilitarized Zone (DMZ) dataset. We conduct extensive experiments, and quantitative and qualitative analyses to prove that our method effectively tackles the open-set long-tailed recognition problem while being robust to unknown classes.

Wildfires are a growing threat to ecosystems, human lives, and infrastructure, with their frequency and intensity rising due to climate change and human activities. Early detection is critical, yet satellite-based monitoring remains challenging due to faint smoke signals, dynamic weather conditions, and the need for real-time analysis over large areas. We introduce WildfireVLM, an AI framework that combines satellite imagery wildfire detection with language-driven risk assessment. We construct a labeled wildfire and smoke dataset using imagery from Landsat-8/9, GOES-16, and other publicly available Earth observation sources, including harmonized products with aligned spectral bands. WildfireVLM employs YOLOv12 to detect fire zones and smoke plumes, leveraging its ability to detect small, complex patterns in satellite imagery. We integrate Multimodal Large Language Models (MLLMs) that convert detection outputs into contextualized risk assessments and prioritized response recommendations for disaster management. We validate the quality of risk reasoning using an LLM-as-judge evaluation with a shared rubric. The system is deployed using a service-oriented architecture that supports real-time processing, visual risk dashboards, and long-term wildfire tracking, demonstrating the value of combining computer vision with language-based reasoning for scalable wildfire monitoring. The code and dataset are publicly available on GitHub at https://github.com/Ayanzadeh93/_WildfireVLM_.

Fish tracking is a key technology for obtaining movement trajectories and identifying abnormal behavior. However, it faces considerable challenges, including occlusion, multi-scale tracking, and fish deformation. Notably, extant reviews have focused more on behavioral analysis rather than providing a comprehensive overview of computer vision-based fish tracking approaches. This paper presents a comprehensive review of the advancements of fish tracking technologies over the past seven years (2017-2023). It explores diverse fish tracking techniques with an emphasis on fundamental localization and tracking methods. Auxiliary plugins commonly integrated into fish tracking systems, such as underwater image enhancement and re-identification, are also examined. Additionally, this paper summarizes open-source datasets, evaluation metrics, challenges, and applications in fish tracking research. Finally, a comprehensive discussion offers insights and future directions for vision-based fish tracking techniques. We hope that our work could provide a partial reference in the development of fish tracking algorithms.

Accurate fisheries data are crucial for effective and sustainable marine resource management. With the recent adoption of Electronic Monitoring (EM) systems, more video data is now being collected than can be feasibly reviewed manually. This paper addresses this challenge by developing an optimized deep learning pipeline for automated fish re-identification (Re-ID) using the novel AutoFish dataset, which simulates EM systems with conveyor belts with six similarly looking fish species. We demonstrate that key Re-ID metrics (R1 and mAP@k) are substantially improved by using hard triplet mining in conjunction with a custom image transformation pipeline that includes dataset-specific normalization. By employing these strategies, we demonstrate that the Vision Transformer-based Swin-T architecture consistently outperforms the Convolutional Neural Network-based ResNet-50, achieving peak performance of 41.65% mAP@k and 90.43% Rank-1 accuracy. An in-depth analysis reveals that the primary challenge is distinguishing visually similar individuals of the same species (Intra-species errors), where viewpoint inconsistency proves significantly more detrimental than partial occlusion. The source code and documentation are available at: https://github.com/msamdk/Fish_Re_Identification.git

Automatic monitoring of tree plantations plays a crucial role in agriculture. Flawless monitoring of tree health helps farmers make informed decisions regarding their management by taking appropriate action. Use of drone images for automatic plantation monitoring can enhance the accuracy of the monitoring process, while still being affordable to small farmers in developing countries such as India. Small, low cost drones equipped with an RGB camera can capture high-resolution images of agricultural fields, allowing for detailed analysis of the well-being of the plantations. Existing methods of automated plantation monitoring are mostly based on satellite images, which are difficult to get for the farmers. We propose an automated system for plantation health monitoring using drone images, which are becoming easier to get for the farmers. We propose a dataset of images of trees with three categories: ``Good health", ``Stunted", and ``Dead". We annotate the dataset using CVAT annotation tool, for use in research purposes. We experiment with different well-known CNN models to observe their performance on the proposed dataset. The initial low accuracy levels show the complexity of the proposed dataset. Further, our study revealed that, depth-wise convolution operation embedded in a deep CNN model, can enhance the performance of the model on drone dataset. Further, we apply state-of-the-art object detection models to identify individual trees to better monitor them automatically.

Coral reefs are fast-changing and complex ecosystems that are crucial to monitor and study. Biological hotspot detection can help coral reef managers prioritize limited resources for monitoring and intervention tasks. Here, we explore the use of autonomous underwater vehicles (AUVs) with cameras, coupled with visual detectors and photogrammetry, to map and identify these hotspots. This approach can provide high spatial resolution information in fast feedback cycles. To the best of our knowledge, we present one of the first attempts at using an AUV to gather visually-observed, fine-grain biological hotspot maps in concert with topography of a coral reefs. Our hotspot maps correlate with rugosity, an established proxy metric for coral reef biodiversity and abundance, as well as with our visual inspections of the 3D reconstruction. We also investigate issues of scaling this approach when applied to new reefs by using these visual detectors pre-trained on large public datasets.

Camera traps enable the automatic collection of large quantities of image data. Biologists all over the world use camera traps to monitor animal populations. We have recently been making strides towards automatic species classification in camera trap images. However, as we try to expand the geographic scope of these models we are faced with an interesting question: how do we train models that perform well on new (unseen during training) camera trap locations? Can we leverage data from other modalities, such as citizen science data and remote sensing data? In order to tackle this problem, we have prepared a challenge where the training data and test data are from different cameras spread across the globe. For each camera, we provide a series of remote sensing imagery that is tied to the location of the camera. We also provide citizen science imagery from the set of species seen in our data. The challenge is to correctly classify species in the test camera traps.

Forest monitoring and education are key to forest protection, education and management, which is an effective way to measure the progress of a country's forest and climate commitments. Due to the lack of a large-scale wild forest monitoring benchmark, the common practice is to train the model on a common outdoor benchmark (e.g., KITTI) and evaluate it on real forest datasets (e.g., CanaTree100). However, there is a large domain gap in this setting, which makes the evaluation and deployment difficult. In this paper, we propose a new photorealistic virtual forest dataset and a multimodal transformer-based algorithm for tree detection and instance segmentation. To the best of our knowledge, it is the first time that a multimodal detection and segmentation algorithm is applied to large-scale forest scenes. We believe that the proposed dataset and method will inspire the simulation, computer vision, education, and forestry communities towards a more comprehensive multi-modal understanding.

Illegal gold mining in the Amazon rainforest causes deforestation, water contamination, and long-term ecosystem disruption, yet remains difficult to monitor at fine spatial scales. Satellite imagery supports large-scale observation, but often misses small mining-related structures and subtle land-cover transitions, especially under frequent cloud cover. We introduce ELDOR, a large-scale UAV benchmark for monitoring environmental and landscape disturbance from illegal gold mining in the rainforest. ELDOR contains manually annotated orthomosaic imagery covering over 2,500 hectares, with pixel-level semantic labels for both mining-related activities and surrounding ecological structures. With this unified annotation source, we establish four benchmark tasks: semantic segmentation, segmentation-derived recognition, direct multi-label classification, and class-presence recognition with vision-language models. Across these tasks, we compare generic and remote-sensing-specific segmentation models, vision foundation model-related segmentation methods, direct multi-label classification methods, and vision-language models under a controlled closed-set protocol. Results show that current methods still struggle with rare small-scale mining structures and fine-grained recovery classes, suggesting the need for context-aware and multimodal modeling. To support domain analysis and practical use, we further build an interactive explorer for domain experts that provides a unified interface for data exploration and model inference.

Information on trees at the individual level is crucial for monitoring forest ecosystems and planning forest management. Current monitoring methods involve ground measurements, requiring extensive cost, time and labor. Advances in drone remote sensing and computer vision offer great potential for mapping individual trees from aerial imagery at broad-scale. Large pre-trained vision models, such as the Segment Anything Model (SAM), represent a particularly compelling choice given limited labeled data. In this work, we compare methods leveraging SAM for the task of automatic tree crown instance segmentation in high resolution drone imagery in three use cases: 1) boreal plantations, 2) temperate forests and 3) tropical forests. We also study the integration of elevation data into models, in the form of Digital Surface Model (DSM) information, which can readily be obtained at no additional cost from RGB drone imagery. We present BalSAM, a model leveraging SAM and DSM information, which shows potential over other methods, particularly in the context of plantations. We find that methods using SAM out-of-the-box do not outperform a custom Mask R-CNN, even with well-designed prompts. However, efficiently tuning SAM end-to-end and integrating DSM information are both promising avenues for tree crown instance segmentation models.

Camera traps are vital for large-scale biodiversity monitoring, yet accurate automated analysis remains challenging due to diverse deployment environments. While the computer vision community has mostly framed this challenge as cross-domain generalization, this perspective overlooks a primary challenge faced by ecological practitioners: maintaining reliable recognition at the fixed site over time, where the dynamic nature of ecosystems introduces profound temporal shifts in both background and animal distributions. To bridge this gap, we present the first unified study of camera-trap species recognition over time. We introduce a realistic benchmark comprising 546 camera traps with a streaming protocol that evaluates models over chronologically ordered intervals. Our end-user-centric study yields four key findings. (1) Biological foundation models (e.g., BioCLIP 2) underperform at numerous sites even in initial intervals, underscoring the necessity of site-specific adaptation. (2) Adaptation is challenging under realistic evaluation: when models are updated using past data and evaluated on future intervals (mirrors real deployment lifecycles), naive adaptation can even degrade below zero-shot performance. (3) We identify two drivers of this difficulty: severe class imbalance and pronounced temporal shift in both species distribution and backgrounds between consecutive intervals. (4) We find that effective integration of model-update and post-processing techniques can largely improve accuracy, though a gap from the upper bounds remains. Finally, we highlight critical open questions, such as predicting when zero-shot models will succeed at a new site and determining whether/when model updates are necessary. Our benchmark and analysis provide actionable deployment guidelines for ecological practitioners while establishing new directions for future research in vision and machine learning.

Camera traps are valuable tools in animal ecology for biodiversity monitoring and conservation. However, challenges like poor generalization to deployment at new unseen locations limit their practical application. Images are naturally associated with heterogeneous forms of context possibly in different modalities. In this work, we leverage the structured context associated with the camera trap images to improve out-of-distribution generalization for the task of species identification in camera traps. For example, a photo of a wild animal may be associated with information about where and when it was taken, as well as structured biology knowledge about the animal species. While typically overlooked by existing work, bringing back such context offers several potential benefits for better image understanding, such as addressing data scarcity and enhancing generalization. However, effectively integrating such heterogeneous context into the visual domain is a challenging problem. To address this, we propose a novel framework that reformulates species classification as link prediction in a multimodal knowledge graph (KG). This framework seamlessly integrates various forms of multimodal context for visual recognition. We apply this framework for out-of-distribution species classification on the iWildCam2020-WILDS and Snapshot Mountain Zebra datasets and achieve competitive performance with state-of-the-art approaches. Furthermore, our framework successfully incorporates biological taxonomy for improved generalization and enhances sample efficiency for recognizing under-represented species.

Motivated by the theoretical interest in reconstructing long 3D trajectories of individual birds in large flocks, we developed CoMo, a co-moving camera system of two synchronized high speed cameras coupled with rotational stages, which allow us to dynamically follow the motion of a target flock. With the rotation of the cameras we overcome the limitations of standard static systems that restrict the duration of the collected data to the short interval of time in which targets are in the cameras common field of view, but at the same time we change in time the external parameters of the system, which have then to be calibrated frame-by-frame. We address the calibration of the external parameters measuring the position of the cameras and their three angles of yaw, pitch and roll in the system "home" configuration (rotational stage at an angle equal to 0deg and combining this static information with the time dependent rotation due to the stages. We evaluate the robustness and accuracy of the system by comparing reconstructed and measured 3D distances in what we call 3D tests, which show a relative error of the order of 1%. The novelty of the work presented in this paper is not only on the system itself, but also on the approach we use in the tests, which we show to be a very powerful tool in detecting and fixing calibration inaccuracies and that, for this reason, may be relevant for a broad audience.

This paper addresses the problem of species classification in bird song recordings. The massive amount of available field recordings of birds presents an opportunity to use machine learning to automatically track bird populations. However, it also poses a problem: such field recordings typically contain significant environmental noise and overlapping vocalizations that interfere with classification. The widely available training datasets for species identification also typically leave background species unlabeled. This leads classifiers to ignore vocalizations with a low signal-to-noise ratio. However, recent advances in unsupervised sound separation, such as mixture invariant training (MixIT), enable high quality separation of bird songs to be learned from such noisy recordings. In this paper, we demonstrate improved separation quality when training a MixIT model specifically for birdsong data, outperforming a general audio separation model by over 5 dB in SI-SNR improvement of reconstructed mixtures. We also demonstrate precision improvements with a downstream multi-species bird classifier across three independent datasets. The best classifier performance is achieved by taking the maximum model activations over the separated channels and original audio. Finally, we document additional classifier improvements, including taxonomic classification, augmentation by random low-pass filters, and additional channel normalization.

Traditional fish farming practices often lead to inefficient feeding, resulting in environmental issues and reduced productivity. We developed an innovative system combining computer vision and IoT technologies for precise Tilapia feeding. Our solution uses real-time IoT sensors to monitor water quality parameters and computer vision algorithms to analyze fish size and count, determining optimal feed amounts. A mobile app enables remote monitoring and control. We utilized YOLOv8 for keypoint detection to measure Tilapia weight from length, achieving 94\% precision on 3,500 annotated images. Pixel-based measurements were converted to centimeters using depth estimation for accurate feeding calculations. Our method, with data collection mirroring inference conditions, significantly improved results. Preliminary estimates suggest this approach could increase production up to 58 times compared to traditional farms. Our models, code, and dataset are open-source~\footnote{The code, dataset, and models are available upon reasonable request.

Seismic sensing has emerged as a promising solution for border surveillance and monitoring; the seismic sensors that are often buried underground are small and cannot be noticed easily, making them difficult for intruders to detect, avoid, or vandalize. This significantly enhances their effectiveness compared to highly visible cameras or fences. However, accurately detecting and distinguishing between overlapping activities that are happening simultaneously, such as human intrusions, animal movements, and vehicle rumbling, remains a major challenge due to the complex and noisy nature of seismic signals. Correctly identifying simultaneous activities is critical because failing to separate them can lead to misclassification, missed detections, and an incomplete understanding of the situation, thereby reducing the reliability of surveillance systems. To tackle this problem, we propose HyMAD (Hybrid Multi-Activity Detection), a deep neural architecture based on spatio-temporal feature fusion. The framework integrates spectral features extracted with SincNet and temporal dependencies modeled by a recurrent neural network (RNN). In addition, HyMAD employs self-attention layers to strengthen intra-modal representations and a cross-modal fusion module to achieve robust multi-label classification of seismic events. e evaluate our approach on a dataset constructed from real-world field recordings collected in the context of border surveillance and monitoring, demonstrating its ability to generalize to complex, simultaneous activity scenarios involving humans, animals, and vehicles. Our method achieves competitive performance and offers a modular framework for extending seismic-based activity recognition in real-world security applications.

Recently, there has been increasing interest in multimodal applications that integrate text with other modalities, such as images, audio and video, to facilitate natural language interactions with multimodal AI systems. While applications involving standard modalities have been extensively explored, there is still a lack of investigation into specific data modalities such as remote sensing (RS) data. Despite the numerous potential applications of RS data, including environmental protection, disaster monitoring and land planning, available solutions are predominantly focused on specific tasks like classification, captioning and retrieval. These solutions often overlook the unique characteristics of RS data, such as its capability to systematically provide information on the same geographical areas over time. This ability enables continuous monitoring of changes in the underlying landscape. To address this gap, we propose a novel foundation model for bi-temporal RS image pairs, in the context of change detection analysis, leveraging Contrastive Learning and the LEVIR-CC dataset for both captioning and text-image retrieval. By jointly training a contrastive encoder and captioning decoder, our model add text-image retrieval capabilities, in the context of bi-temporal change detection, while maintaining captioning performances that are comparable to the state of the art. We release the source code and pretrained weights at: https://github.com/rogerferrod/RSICRC.

Earth observation is a fundamental tool for monitoring the evolution of land use in specific areas of interest. Observing and precisely defining change, in this context, requires both time-series data and pixel-wise segmentations. To that end, we propose the DynamicEarthNet dataset that consists of daily, multi-spectral satellite observations of 75 selected areas of interest distributed over the globe with imagery from Planet Labs. These observations are paired with pixel-wise monthly semantic segmentation labels of 7 land use and land cover (LULC) classes. DynamicEarthNet is the first dataset that provides this unique combination of daily measurements and high-quality labels. In our experiments, we compare several established baselines that either utilize the daily observations as additional training data (semi-supervised learning) or multiple observations at once (spatio-temporal learning) as a point of reference for future research. Finally, we propose a new evaluation metric SCS that addresses the specific challenges associated with time-series semantic change segmentation. The data is available at: https://mediatum.ub.tum.de/1650201.

Mangroves are dynamic coastal ecosystems that are crucial to environmental health, economic stability, and climate resilience. The monitoring and preservation of mangroves are of global importance, with remote sensing technologies playing a pivotal role in these efforts. The integration of cutting-edge artificial intelligence with satellite data opens new avenues for ecological monitoring, potentially revolutionizing conservation strategies at a time when the protection of natural resources is more crucial than ever. The objective of this work is to provide a comprehensive evaluation of recent deep-learning models on the task of mangrove segmentation. We first introduce and make available a novel open-source dataset, MagSet-2, incorporating mangrove annotations from the Global Mangrove Watch and satellite images from Sentinel-2, from mangrove positions all over the world. We then benchmark three architectural groups, namely convolutional, transformer, and mamba models, using the created dataset. The experimental outcomes further validate the deep learning community's interest in the Mamba model, which surpasses other architectures in all metrics.

Mosquito-borne diseases affect more than one billion people each year and cause close to one million deaths. Traditional surveillance methods rely on traps and manual identification that are slow, labor-intensive, and difficult to scale. Audio-based mosquito monitoring offers a non-destructive, lower-cost, and more scalable complement to trap-based surveillance, but reliable species classification remains difficult under real-world recording conditions. Mosquito flight tones are narrow-band, often low in signal-to-noise ratio, and easily masked by background noise, and recordings for several epidemiologically relevant species remain limited, creating pronounced class imbalance. Variation across devices, environments, and collection protocols further increases the difficulty of robust classification. Such variation can cause models to rely on domain-specific recording artefacts rather than species-relevant acoustic cues, which makes transfer to new acquisition settings difficult. The BioDCASE 2026 Cross-Domain Mosquito Species Classification (CD-MSC) challenge is designed around this deployment problem by evaluating performance on both seen and unseen domains. This paper presents the official baseline system and evaluation pipeline as a simple, fully reproducible reference for the CD-MSC challenge task. The baseline uses log-mel features and a multitemporal resolution convolutional neural network (MTRCNN) with species and auxiliary domain outputs, together with complete training and test scripts. The baseline system performs strongly on seen domains but degrades markedly on unseen domains, showing that cross-domain generalisation, rather than within-domain recognition, is the central challenge for practical mosquito species classification from multi-source bioacoustic recordings.

This paper deals with 3D reconstruction of seabirds which recently came into focus of environmental scientists as valuable bio-indicators for environmental change. Such 3D information is beneficial for analyzing the bird's behavior and physiological shape, for example by tracking motion, shape, and appearance changes. From a computer vision perspective birds are especially challenging due to their rapid and oftentimes non-rigid motions. We propose an approach to reconstruct the 3D pose and shape from monocular videos of a specific breed of seabird - the common murre. Our approach comprises a full pipeline of detection, tracking, segmentation, and temporally consistent 3D reconstruction. Additionally, we propose a temporal loss that extends current single-image 3D bird pose estimators to the temporal domain. Moreover, we provide a real-world dataset of 10000 frames of video observations on average capture nine birds simultaneously, comprising a large variety of motions and interactions, including a smaller test set with bird-specific keypoint labels. Using our temporal optimization, we achieve state-of-the-art performance for the challenging sequences in our dataset.

This work presents the largest curation of Southern Resident Killer Whale (SRKW) acoustic data to date, also containing other marine mammals in their environment. We systematically search all available public archival hydrophone data within the SRKW habitat (over 30 years of audio data). The search consists of a weakly-supervised, positive-unlabelled, active learning strategy to identify all instances of marine mammals. The resulting transformer-based presence or absence classifiers outperform state-of-the-art classifiers on 3 of 4 expert-annotated datasets in terms of accuracy and energy efficiency. The fleet of WHISPER detection models range from 0.58 (0.48-0.67) AUROC with WHISPER-tiny to 0.77 (0.63-0.93) with WHISPER-large-v3. Our multiclass species classifier obtains a top-1 accuracy of 53.2\% (11 train classes, 4 test classes) and our ecotype classifier obtains a top-1 accuracy of 33.6\% (4 train classes, 5 test classes) on the DCLDE-2026 dataset. We yield 919 hours of SRKW data, 230 hours of Bigg's orca data, 1374 hours of orca data from unlabelled ecotypes, 1501 hours of humpback data, 88 hours of sea lion data, 246 hours of pacific white-sided dolphin data, and over 784 hours of unspecified marine mammal data. This SRKW dataset is larger than DCLDE-2026, Ocean Networks Canada, and OrcaSound combined. The curated species labels are available under CC-BY 4.0 license, and the corresponding audio data are available under the licenses of the original owners. The comprehensive nature of this dataset makes it suitable for unsupervised machine translation, habitat usage surveys, and conservation endeavours for this critically endangered ecotype.

Using drones to track multiple individuals simultaneously in their natural environment is a powerful approach for better understanding group primate behavior. Previous studies have demonstrated that it is possible to automate the classification of primate behavior from video data, but these studies have been carried out in captivity or from ground-based cameras. To understand group behavior and the self-organization of a collective, the whole troop needs to be seen at a scale where behavior can be seen in relation to the natural environment in which ecological decisions are made. This study presents a novel dataset from drone videos for baboon detection, tracking, and behavior recognition. The baboon detection dataset was created by manually annotating all baboons in drone videos with bounding boxes. A tiling method was subsequently applied to create a pyramid of images at various scales from the original 5.3K resolution images, resulting in approximately 30K images used for baboon detection. The tracking dataset is derived from the detection dataset, where all bounding boxes are assigned the same ID throughout the video. This process resulted in half an hour of very dense tracking data. The behavior recognition dataset was generated by converting tracks into mini-scenes, a video subregion centered on each animal; each mini-scene was manually annotated with 12 distinct behavior types, resulting in over 20 hours of data. Benchmark results show mean average precision (mAP) of 92.62\% for the YOLOv8-X detection model, multiple object tracking precision (MOTA) of 63.81\% for the BotSort tracking algorithm, and micro top-1 accuracy of 63.97\% for the X3D behavior recognition model. Using deep learning to classify wildlife behavior from drone footage facilitates non-invasive insight into the collective behavior of an entire group.

Forest wildfires represent one of the catastrophic events that, over the last decades, caused huge environmental and humanitarian damages. In addition to a significant amount of carbon dioxide emission, they are a source of risk to society in both short-term (e.g., temporary city evacuation due to fire) and long-term (e.g., higher risks of landslides) cases. Consequently, the availability of tools to support local authorities in automatically identifying burned areas plays an important role in the continuous monitoring requirement to alleviate the aftereffects of such catastrophic events. The great availability of satellite acquisitions coupled with computer vision techniques represents an important step in developing such tools. This paper introduces a novel open dataset that tackles the burned area delineation problem, a binary segmentation problem applied to satellite imagery. The presented resource consists of pre- and post-fire Sentinel-2 L2A acquisitions of California forest fires that took place starting in 2015. Raster annotations were generated from the data released by California's Department of Forestry and Fire Protection. Moreover, in conjunction with the dataset, we release three different baselines based on spectral indexes analyses, SegFormer, and U-Net models.

Climate change is negatively impacting the world's biodiversity. To build automated systems to monitor these negative biodiversity impacts, large-scale, volunteer-collected datasets like iNaturalist are built from community-identified, natural imagery. However, such volunteer-based data are opportunistic and lack a structured sampling strategy, resulting in geographic, temporal, observation quality, and socioeconomic, biases that stymie uptake of these models for downstream biodiversity monitoring tasks. Here we introduce DivShift North American West Coast (DivShift-NAWC), a curated dataset of almost 8 million iNaturalist plant images across the western coast of North America, for exploring the effects of these biases on deep learning model performance. We compare model performance across four known biases and observe that they indeed confound model performance. We suggest practical strategies for curating datasets to train deep learning models for monitoring climate change's impacts on the world's biodiversity.

Machine learning has the potential to revolutionize passive acoustic monitoring (PAM) for ecological assessments. However, high annotation and compute costs limit the field's efficacy. Generalizable pretrained networks can overcome these costs, but high-quality pretraining requires vast annotated libraries, limiting its current applicability primarily to bird taxa. Here, we identify the optimum pretraining strategy for a data-deficient domain using coral reef bioacoustics. We assemble ReefSet, a large annotated library of reef sounds, though modest compared to bird libraries at 2% of the sample count. Through testing few-shot transfer learning performance, we observe that pretraining on bird audio provides notably superior generalizability compared to pretraining on ReefSet or unrelated audio alone. However, our key findings show that cross-domain mixing which leverages bird, reef and unrelated audio during pretraining maximizes reef generalizability. SurfPerch, our pretrained network, provides a strong foundation for automated analysis of marine PAM data with minimal annotation and compute costs.

Quantifying exhaled CO2 from free-roaming cattle is both a direct indicator of rumen metabolic state and a prerequisite for farm-scale carbon accounting, yet no existing system can deliver continuous, spatially resolved measurements without physical confinement or contact. We present TRACE (Thermal Recognition Attentive-Framework for CO2 Emissions from Livestock), the first unified framework to jointly address per-frame CO2 plume segmentation and clip-level emission flux classification from mid-wave infrared (MWIR) thermal video. TRACE contributes three domain-specific advances: a Thermal Gas-Aware Attention (TGAA) encoder that incorporates per-pixel gas intensity as a spatial supervisory signal to direct self-attention toward high-emission regions at each encoder stage; an Attention-based Temporal Fusion (ATF) module that captures breath-cycle dynamics through structured cross-frame attention for sequence-level flux classification; and a four-stage progressive training curriculum that couples both objectives while preventing gradient interference. Benchmarked against fifteen state-of-the-art models on the CO2 Farm Thermal Gas Dataset, TRACE achieves an mIoU of 0.998 and the best result on every segmentation and classification metric simultaneously, outperforming domain-specific gas segmenters with several times more parameters and surpassing all baselines in flux classification. Ablation studies confirm that each component is individually essential: gas-conditioned attention alone determines precise plume boundary localization, and temporal reasoning is indispensable for flux-level discrimination. TRACE establishes a practical path toward non-invasive, continuous, per-animal CO2 monitoring from overhead thermal cameras at commercial scale. Codes are available at https://github.com/taminulislam/trace.

Monitoring of reforestation is currently being considerably streamlined through the use of drones and image recognition algorithms, which have already proven to be effective on colour imagery. In addition to colour imagery, elevation data is often also available. The primary aim of this work was to improve the performance of the faster-RCNN object detection algorithm by integrating this height information, which showed itself to notably improve performance. Interestingly, the structure of the network played a key role, with direct addition of the height information as a fourth image channel showing no improvement, while integration after the backbone network and before the region proposal network led to marked improvements. This effect persisted with very long training regimes. Increasing the resolution of this height information also showed little effect.

Forests worldwide are increasingly threatened by climate change and disturbances such as fire, pests, and pathogens, creating an urgent need for scalable monitoring of tree cover and tree mortality. Aerial imagery from drones and aircraft is a key data source for detailed and large-scale mapping of tree crowns and mortality. However, related progress is limited by the lack of globally representative, harmonized datasets for joint segmentation of tree cover and mortality. We introduce two novel, open, machine-learning-ready datasets to enable joint segmentation of tree cover and tree mortality from centimeter-scale aerial imagery for the first time at global scales. With DTE-aerial-train, we provide a training dataset comprising 385K image patches of size 1024x1024 pixels, with resolutions ranging from 2.5 to 20 cm. It includes multi-class expert-annotated and -audited pseudo-labels for tree cover and mortality. With DTE-aerial-bench, we provide a geographically balanced benchmark test set of 25 globally distributed orthoimages totaling 525 patches with high-quality expert annotations for both tree cover and mortality. Both the training and benchmark datasets span tropical, temperate, boreal, and dryland biomes and cover a wide range of forest structures and mortality patterns. Using the benchmark test set for evaluation, we establish strong reference baselines that improve mortality segmentation across all biomes and scales with significant gains in challenging regions, such as boreal forests, where the F1 score increases from 0.40 to 0.58 with around 45% relative improvement. All data, models, and code will be publicly released under permissive open-source licenses. An interactive visualization of the benchmark dataset is available at deadtrees.earth/releases/dte-aerial-bench.